BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035484
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ NG + G I +GDN QI V + + + TTI WHG+ Q T W+DGPA++ Q
Sbjct: 25 VVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+FT+ +Q GT +H+H S Q + G ++Y P PY + +
Sbjct: 85 CPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYASMYDVDDDTT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTINGL 174
+I + K G P ++D+ INGL
Sbjct: 145 VITLSDWYHTAAKLGPAFPPNADSVLINGL 174
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG + I +GD Q+ V + + ++T+I WHG Q T W+DGPA++ Q
Sbjct: 25 IVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + +Q GT +H+H S Q + G F++Y P+ P+ + E
Sbjct: 85 CPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDNEST 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTINGL 174
+I + + G P +DA INGL
Sbjct: 145 VITLTDWYHTAARLGPRFPLGADATLINGL 174
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 10 IKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV-AQNTTIRW 68
I+ + + VE+ + CN +++ +NG++ G I GD+V +++TN++ + I W
Sbjct: 3 IRHYKWEVEYMFWAPNCNENIVM-GINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHW 61
Query: 69 HGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR-ASVYGAFI 127
HGI Q T W+DG A I+QC I G+++ Y FT+ N GT +H H QR A +YG+ I
Sbjct: 62 HGILQRGTPWADGTASISQCAINPGETFFYNFTVDNP-GTFFYHGHLGMQRSAGLYGSLI 120
Query: 128 IYP 130
+ P
Sbjct: 121 VDP 123
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G +A GD Q+ V + + + T++ WHG Q T W+DGPA+I Q
Sbjct: 25 VVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + NQ GT +H+H S Q + G F++Y P P+ + +
Sbjct: 85 CPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTING 173
+I + K G P +DA ING
Sbjct: 145 VITLADWYHTAAKLGPRFPAGADATLING 173
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VN + I GDN Q+ + N++ + T+I WHG Q T W+DGPA+I Q
Sbjct: 25 IVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + Q GT +H+H S Q + G F++Y P P+ + E
Sbjct: 85 CPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVDDEST 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTINGL 174
+I + K G P +D+ INGL
Sbjct: 145 VITLADWYHVAAKLGPRFPKGADSTLINGL 174
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G +A GD Q+ V + + + T++ WHG Q T W+DGPA+I Q
Sbjct: 25 VVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + NQ GT +H+H S Q + G F++Y P P+ + +
Sbjct: 85 CPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTING 173
I + K G P+ +D+ ING
Sbjct: 145 TITLADWYHTAAKLGPAFPNGADSTLING 173
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G +A GD Q+ V + + ++T+I WHG Q T W+DGPA+I Q
Sbjct: 25 VVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + +Q GT +H+H S Q + G F++Y P P+ + +
Sbjct: 85 CPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTING 173
+I + K G P +DA ING
Sbjct: 145 VITLADWYHTAAKLGPRFPGGADATLING 173
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G +A GD Q+ V + + ++T+I WHG Q T W+DGPA+I Q
Sbjct: 25 VVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + +Q GT +H+H S Q + G F++Y P P+ + +
Sbjct: 85 CPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTING 173
+I + K G P +DA ING
Sbjct: 145 VITLADWYHTAAKLGPRFPGGADATLING 173
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G I GD Q+ V + + ++T+I WHG Q T W+DGPA+I Q
Sbjct: 25 VVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + +Q GT +H+H S Q + G F++Y P P + +
Sbjct: 85 CPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTING 173
+I V+ K G P +DA ING
Sbjct: 145 VITLVDWYHVAAKLGPAFPLGADATLING 173
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNT-----TIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG I +GD Q+ V +++ +T +I WHG Q T W+DGPA++ Q
Sbjct: 25 VVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S+ Y+F + +Q GT +H+H S Q + G F++Y P P+ I +
Sbjct: 85 CPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDNDDT 144
Query: 146 IIFDVNAVENDMKYGGG-PDSSDACTINGL 174
+I + K G P SD+ INGL
Sbjct: 145 VITLADWYHVAAKLGPRFPFGSDSTLINGL 174
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VN + I +GD Q+ V + + ++T+I WHG Q T W+DGPA++ Q
Sbjct: 25 ILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G ++ Y+F + +Q GT +H+H S Q + G ++Y P+ P+ + +
Sbjct: 85 CPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSLYDVDDDST 144
Query: 146 IIFDVNAVENDMKYGGGPDSSDACTINGL 174
+I + K G ++DA INGL
Sbjct: 145 VITLADWYHLAAKVGSPVPTADATLINGL 173
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VN + I +GD Q+ V + + ++T+I WHG Q T W+DGPA++ Q
Sbjct: 25 ILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G ++ Y+F + +Q GT +H+H S Q + G ++Y P P+ + +
Sbjct: 85 CPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVDDDST 144
Query: 146 IIFDVNAVENDMKYGGGPDSSDACTINGL 174
+I + K G ++DA INGL
Sbjct: 145 VITLADWYHLAAKVGAPVPTADATLINGL 173
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VN + I +GD Q+ V + + ++T+I WHG Q T W+DGPA++ Q
Sbjct: 25 ILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G ++ Y+F + +Q GT +H+H S Q + G ++Y P P+ + +
Sbjct: 85 CPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVDDDST 144
Query: 146 IIFDVNAVENDMKYGGGPDSSDACTINGL 174
+I + K G ++DA INGL
Sbjct: 145 VITLADWYHLAAKVGAPVPTADATLINGL 173
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQ 87
+ VNG G I +GD Q+ V N + ++T++ WHG Q T W+DGPA++ Q
Sbjct: 25 VVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGPAFVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY 129
CPI G S+ Y+F+ Q GT +H+H S Q G F++Y
Sbjct: 85 CPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVY 127
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQ-----NTTIRWHGIRQLRTGWSDGPAYITQ 87
+ G + G IA GDN QI N++ + +T+I WHG Q T W+DGPA+ITQ
Sbjct: 26 VNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQ 85
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPYPFSAPIQAEIP 145
CPI G S++Y F + GT +H+H + Q + G F++Y P P + +
Sbjct: 86 CPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTT 145
Query: 146 II--FDVNAVENDMKYGGGPDSSDACTINGL 174
II D V GG ++D+ I+GL
Sbjct: 146 IITLADWYHVLAKEMGAGGAITADSTLIDGL 176
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TTIRWHGIRQLRTGWSDGPAYITQCPIK 91
+T NG G AI GDN+ I VTN + N T+I WHGIRQL + DG +TQCPI
Sbjct: 89 MTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIA 148
Query: 92 GGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIYPRMPYPFSAPIQAEIPIIF 148
G + TY+F V Q GT +H+H S Q ++G II P +A ++ +IF
Sbjct: 149 PGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING----PATADYDEDVGVIF 201
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TTIRWHGIRQLRTGWSDGPAYITQCPIK 91
+T NG G AI GDN+ I VTN + N T+I WHGIRQL + DG +TQCPI
Sbjct: 89 MTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIA 148
Query: 92 GGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIYPRMPYPFSAPIQAEIPIIF 148
G + TY+F V Q GT +H+H S Q ++G II P +A ++ +IF
Sbjct: 149 PGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING----PATADYDEDVGVIF 201
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 11 KSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHG 70
+ F ++E + + NG+ I V EGD+V + VTN TI WHG
Sbjct: 3 REFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHG 62
Query: 71 IRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAH-----HSWQRASVYGA 125
+ Q T SDG + TQ I+ G ++TY+F GT+ +H H H R ++G
Sbjct: 63 MLQRGTWQSDGVPHATQHAIEPGDTFTYKFK-AEPAGTMWYHCHVNVNEHVTMRG-MWGP 120
Query: 126 FIIYPRMPYPFSAPIQAEIPIIFD--VNAVENDMKYGGGP-DSSDACTIN 172
I+ P+ P P + + ++ V++ N GG P D D TIN
Sbjct: 121 LIVEPKNPLPIEKTVTKDYILMLSDWVSSWANKPGEGGIPGDVFDYYTIN 170
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 50 DNVQIKVTNRVA-----QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVN 104
D QI V +++ + T+I WHG Q T DGPA++ QCPI +S+ Y+F +
Sbjct: 63 DRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPG 122
Query: 105 QRGTLLWHAHHSWQRAS-VYGAFIIY-PRMPY 134
Q GT +H+H S Q + GAF++Y P P+
Sbjct: 123 QAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPH 154
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 32 LLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQ-NTTIRWHGIRQLRTGWSDGPAYITQCPI 90
++T NG++ I V +GD VQI +TN + NT++ +HG+ Q T DG ++TQCPI
Sbjct: 24 VITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI 83
Query: 91 KGGQSYTYEFTIVNQRGTLLWHAHHSWQ-RASVYGAFIIY-PRMPYPFSAPIQAEI 144
G + Y FT+ GT +H+H Q + G FII PY + + +
Sbjct: 84 APGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSFPYDYDEELSLSL 139
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIR-----WHGIRQLRTGWSDGPAYITQ 87
+ VNG + L I + DN ++ V N + T +R WHG+ Q T W+DG + Q
Sbjct: 26 ILVNGVHGPL-IRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY 129
CPI G ++ Y+FT GT +H+H Q + G +IY
Sbjct: 85 CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY 127
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIR-----WHGIRQLRTGWSDGPAYITQ 87
+ VNG + L I + DN ++ V N + T +R WHG+ Q T W+DG + Q
Sbjct: 26 ILVNGVHGPL-IRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQ 84
Query: 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRAS-VYGAFIIY 129
CPI G ++ Y+FT GT +H+H Q + G +IY
Sbjct: 85 CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY 127
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 29 KLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TTIRWHGIRQLRTGWSDGPAYITQ 87
K +++ VN + G I GDN+++ V N + N T++ WHG+RQL ++DG +T+
Sbjct: 95 KNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTE 154
Query: 88 CPI--KGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118
CPI KGG+ TY+F Q GT +H+H S Q
Sbjct: 155 CPIPPKGGRK-TYKFR-ATQYGTSWYHSHFSAQ 185
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 11 KSFLFNV----EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TT 65
+S++FN+ W + K++L +NG G I GD V++ V N + N T+
Sbjct: 34 QSYVFNLTEVDNWMGPDGVVKEKVML--INGNIMGPNIVANWGDTVEVTVINNLVTNGTS 91
Query: 66 IRWHGIRQLRTGWSDGPAYITQCPI--KGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118
I WHGI Q T DG +T+CPI KGGQ TY + Q GT +H+H S Q
Sbjct: 92 IHWHGIHQKDTNLHDGANGVTECPIPPKGGQR-TYRWR-ARQYGTSWYHSHFSAQ 144
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 11 KSFLFNV----EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TT 65
+S++FN+ W + K++L +NG G I GD V++ V N + N T+
Sbjct: 34 QSYVFNLTEVDNWMGPDGVVKEKVML--INGNIMGPNIVANWGDTVEVTVINNLVTNGTS 91
Query: 66 IRWHGIRQLRTGWSDGPAYITQCPI--KGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118
I WHGI Q T DG +T+CPI KGGQ TY + Q GT +H+H S Q
Sbjct: 92 IHWHGIHQKDTNLHDGANGVTECPIPPKGGQR-TYRWR-ARQYGTSWYHSHFSAQ 144
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 11 KSFLFNV----EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQN-TT 65
+S++FN+ W + K++L +NG G I GD V++ V N + N T+
Sbjct: 34 QSYVFNLTEVDNWMGPDGVVKEKVML--INGNIMGPNIVANWGDTVEVTVINNLVTNGTS 91
Query: 66 IRWHGIRQLRTGWSDGPAYITQCPI--KGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118
I WHGI Q T DG +T+CPI KGGQ TY + Q GT +H+H S Q
Sbjct: 92 IHWHGIXQKDTNLHDGANGVTECPIPPKGGQR-TYRWR-ARQYGTSWYHSHFSAQ 144
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 34 TVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGG 93
+ NG G + EGD ++I TN A TI +HG+ + DG I I G
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRATM---DGTPGIGAGSIAPG 114
Query: 94 QSYTYEFTIVNQRGTLLWHAHHS----WQRASVYGAFIIYPRMPYPFSAPIQAEIPIIFD 149
QS+TYEF GT L+H H S +YG FI+ P+ P P E+ ++
Sbjct: 115 QSFTYEFD-ATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP---PADDEMVMV-- 168
Query: 150 VNAVENDMKYGGGPDSSDACTINGLP 175
+N D G D ++ ++NGLP
Sbjct: 169 MNGYNTD-----GGDDNEFYSVNGLP 189
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 2 LPFSSSQTIKSFLFN----VEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVT 57
LP +++ + +F+ ++ + + K L T NG I V+EGD ++I V
Sbjct: 38 LPLLKNESKEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVK 97
Query: 58 NRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTI-VNQRGTLLWHAH-H 115
N++ + TTI WHG+ DG + PI G+ Y F I + GT +H H H
Sbjct: 98 NKLKEATTIHWHGVPV--PPDQDGSPH---DPILAGEERIYRFEIPQDSAGTYWYHPHPH 152
Query: 116 SWQRASVY----GAFIIYPR 131
V+ GAF+I +
Sbjct: 153 YTASKQVFMGLAGAFVIKAK 172
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 25 LCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY 84
+ + LLT G + G + V D V++ + NR+ + T + WHG+ + D P
Sbjct: 30 IAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI--SPKVDDPF- 86
Query: 85 ITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR------ASVYGAFII 128
I G+S+TYEFT+ + W+ H R A + GA ++
Sbjct: 87 ---LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV 133
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 44 IAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDG--PAYITQCPIKGGQSYTYEFT 101
I + G V + + N++ + T + WHG W + P++ I G+SY Y F
Sbjct: 40 IILRRGQRVDMTLKNKLTEPTIVHWHG---FDVNWHNDAHPSFA----ITPGESYNYSFD 92
Query: 102 IVNQRGTLLWHAH 114
+VN+ GT L+H H
Sbjct: 93 VVNRAGTYLYHPH 105
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 18/147 (12%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
+S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 ASGPKVTEFTMTIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H S W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPSGMVPW 138
Query: 118 QRAS-VYGAFIIYPR--MPYPFSAPIQ 141
S + G ++ PR + P AP+
Sbjct: 139 HVVSGMSGTLMVLPRDGLKDPAGAPLH 165
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++HA W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHAAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 3 PFSSSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQ 62
P S+ + V+ S T+ + +NG Y G I V++GD+V++ +NR+ +
Sbjct: 11 PLLESRRGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE 70
Query: 63 NTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAH 114
N ++ G+ Q+ GPA + + + I TL +HA+
Sbjct: 71 NVSMTVAGL-QVPGPLMGGPARM----MSPNADWAPVLPIRQNAATLWYHAN 117
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHA-------H 114
+ +HG TG G P G+ T F ++ GT ++H H
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPH 138
Query: 115 HSWQRASVYGAFIIYPR 131
H S G ++ PR
Sbjct: 139 HVVSGMS--GTLMVLPR 153
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--AQNTTIRWHGIRQLR 75
E K V T L +T NG G + V+EGD VQ+ + N A ++ +HG
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGA---- 96
Query: 76 TGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----WQRAS-VYGAFIIYP 130
TG G P G+ T F ++ GT ++H W S + G ++ P
Sbjct: 97 TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLP 152
Query: 131 R 131
R
Sbjct: 153 R 153
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
++ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHSVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVEFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
++ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHSVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVNFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--AQNTTIRWHGIRQLR 75
E K V T L +T NG G + V+EGD VQ+ + N A + +HG
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA---- 96
Query: 76 TGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----WQRAS-VYGAFIIYP 130
TG G P G+ T F ++ GT ++H W S + G ++ P
Sbjct: 97 TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLP 152
Query: 131 R 131
R
Sbjct: 153 R 153
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 26 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 85
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 86 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 137
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 138 HVVSGLSGTLMVLPR 152
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 28 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 87
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 88 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 139
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 140 HVVSGMSGTLMVLPR 154
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGLSGTLMVLPR 153
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--AQNTTIRWHGIRQLR 75
E K V T L +T NG G + V+EGD VQ+ + N A + +HG
Sbjct: 42 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA---- 97
Query: 76 TGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPR 131
TG G P G+ T F ++ GT ++H + G ++ PR
Sbjct: 98 TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHC---TPHPFMSGTLMVLPR 146
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 15/121 (12%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--AQNTTIRWHGIRQLR 75
E K V T L +T NG G + V+EGD VQ+ + N A + +HG
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA---- 96
Query: 76 TGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----WQRAS-VYGAFIIYP 130
TG G P G+ T F ++ GT ++H W S + G ++ P
Sbjct: 97 TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLP 152
Query: 131 R 131
R
Sbjct: 153 R 153
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 139 HVVSGMSGTLMVLPR 153
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 33 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 92
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 93 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 144
Query: 118 QRAS-VYGAFIIYPR 131
S + G ++ PR
Sbjct: 145 HVVSGMSGTLMVLPR 159
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 16/135 (11%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS----W 117
+ +HG TG G P G+ T F ++ GT ++H W
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYHCAPEGMVPW 138
Query: 118 QRAS-VYGAFIIYPR 131
S G ++ PR
Sbjct: 139 HVVSGASGTLMVLPR 153
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQS 95
NG G A+ + G V + + N++ + TT+ WHG+ ++ GP I P G +S
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI--IPPGGKRS 98
Query: 96 YTYEFTIVNQRGTLLW---HAHHSWQRASVYG 124
T V+Q W H H R G
Sbjct: 99 VTLN---VDQPAATCWFHPHQHGKTGRQVAMG 127
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQS 95
NG G A+ + G V + + N++ + TT+ WHG+ ++ GP I P G +S
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI--IPPGGKRS 98
Query: 96 YTYEFTIVNQRGTLLW---HAHHSWQRASVYG 124
T V+Q W H H R G
Sbjct: 99 VTLN---VDQPAATCWFHPHQHGKTGRQVAMG 127
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR 72
NG G A+ + G V + + N++ + TT+ WHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQS 95
NG G A+ + G V + + N++ + TT+ WHG+ ++ GP I P G +S
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI--IPPGGKRS 98
Query: 96 YTYEFTIVNQRGTLLW---HAHHSWQRASVYG 124
T V+Q W H H R G
Sbjct: 99 VTLN---VDQPAATCWFHPHQHGKTGRQVAMG 127
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR 72
NG G A+ + G V + + N++ + TT+ WHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWH 112
+ +HG TG G P G+ T F ++ GT ++H
Sbjct: 87 MPHNVDFHGA----TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYH 129
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--AQNTTIRWHGIRQLR 75
E K V T L +T NG G + V+EGD VQ+ + N A + +HG
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA---- 96
Query: 76 TGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWH 112
TG G P G+ T F ++ GT ++H
Sbjct: 97 TGALGGAKLTNVNP---GEQATLRFK-ADRSGTFVYH 129
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR 72
NG G A+ + G V + + N++ + TT+ WHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR 72
NG G A+ + G V + + N++ + TT+ WHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 36 NGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR 72
NG G A+ + G V + + N++ + TT+ WHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 12/133 (9%)
Query: 5 SSSQTIKSFLFNVEWKT-VSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV--A 61
S + F +E K V T L +T NG G + V+EGD VQ+ + N A
Sbjct: 27 KSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA 86
Query: 62 QNTTIRWHGIRQLRTGW---SDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118
+ +HG G + P K +S T+ + + G + WH
Sbjct: 87 MPHNVDFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVY-VCAPEGMVPWHV----- 140
Query: 119 RASVYGAFIIYPR 131
+ + G ++ PR
Sbjct: 141 VSGMSGTLMVLPR 153
>pdb|4AAY|A Chain A, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|C Chain C, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|E Chain E, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|G Chain G, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 845
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 80 DGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPF 136
D P Q P K Q ++++ I N R ++W + + Q + R PYPF
Sbjct: 694 DAPWRGLQAPGKQQQKDSHKYLINNGRANVVWQSAYLDQEND-----FVMDRFPYPF 745
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 18 EWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTN 58
E K V+ T +T NG G + V+EGD +++ + N
Sbjct: 37 EKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVN 77
>pdb|1SNT|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2
pdb|1SO7|A Chain A, Maltose-Induced Structure Of The Human Cytolsolic
Sialidase Neu2
pdb|1VCU|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|1VCU|B Chain B, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|2F0Z|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Zanamivir Inhibitor
pdb|2F10|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Peramivir Inhibitor
pdb|2F11|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Isobutyl Ether Mimetic Inhibitor
pdb|2F12|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 3- Hydroxypropyl Ether Mimetic Inhibitor
pdb|2F13|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 2',3'- Dihydroxypropyl Ether Mimetic Inhibitor
Length = 382
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 109 LLWHAHHSWQRASVYGAFIIYPRMPYP--FSAPIQAEIPIIFDVNAVENDMK-YGGGPDS 165
L H HSWQRA + GA+ + PR P P +S P+ ++ + +D++ G GPD
Sbjct: 296 LYTHPTHSWQRADL-GAY-LNPRPPAPEAWSEPV-----LLAKGSCAYSDLQSMGTGPDG 348
Query: 166 S 166
S
Sbjct: 349 S 349
>pdb|2F26|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant
pdb|2F27|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
pdb|2F27|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
Length = 382
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 109 LLWHAHHSWQRASVYGAFIIYPRMPYP--FSAPIQAEIPIIFDVNAVENDMK-YGGGPDS 165
L H HSWQRA + GA+ + PR P P +S P+ ++ + +D++ G GPD
Sbjct: 296 LYTHPTHSWQRADL-GAY-LNPRPPAPEAWSEPV-----LLAKGSCAYSDLQSMGTGPDG 348
Query: 166 S 166
S
Sbjct: 349 S 349
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 EFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPFSAPIQAEIPIIFDVN 151
E + +R L + SW RA+V I+ R P F P +A +P +++ +
Sbjct: 151 EIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPV-FPLPERARVPELYETD 202
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 EFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPFSAPIQAEIPIIFDVN 151
E + +R L + SW RA+V I+ R P F P +A +P +++ +
Sbjct: 151 EIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPV-FPLPERARVPELYETD 202
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 99 EFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPFSAPIQAEIPIIFDVN 151
E + +R L + SW RA+V I+ R P F P +A +P +++ +
Sbjct: 151 EIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPV-FPLPERARVPELYETD 202
>pdb|2F28|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
pdb|2F29|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
pdb|2F29|B Chain B, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 109 LLWHAHHSWQRASVYGAFIIYPRMPYP--FSAPIQAEIPIIFDVNAVENDMK-YGGGPDS 165
L H HSWQRA + GA+ + PR P P +S P+ ++ + +D++ G GPD
Sbjct: 296 LYTHPTHSWQRADL-GAY-LNPRPPAPEAWSEPV-----LLAKGSCAYSDLQSMGTGPDG 348
Query: 166 S 166
S
Sbjct: 349 S 349
>pdb|2LYD|A Chain A, The Solution Structure Of The Dm Dcp1 Evh1 Domain In
Complex With The Xrn1 Dbm Peptide
Length = 134
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 113 AHHSWQRASVYGAFIIYPRMPYPFSA 138
+ + W++ V GAF IY R PF +
Sbjct: 46 SQNEWEKTDVEGAFFIYHRNAEPFHS 71
>pdb|2F24|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
pdb|2F25|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
pdb|2F25|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 109 LLWHAHHSWQRASVYGAFIIYPRMPYP--FSAPIQAEIPIIFDVNAVENDMK-YGGGPDS 165
L H HSWQRA + GA+ + PR P P +S P+ ++ + +D++ G GPD
Sbjct: 296 LYTHPTHSWQRADL-GAY-LNPRPPAPEAWSEPV-----LLAKGSCAYSDLQSMGTGPDG 348
Query: 166 S 166
S
Sbjct: 349 S 349
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 17 VEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHG 70
V WKTV+ + + K +L V E G EG V +K+T ++ T G
Sbjct: 248 VSWKTVTEIGDDKKILKKVLKEXEGYERP-NEGAVVTVKITGKLQDGTVFLKKG 300
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 17 VEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHG 70
V WKTV+ + + K +L V E G EG V +K+T ++ T G
Sbjct: 232 VSWKTVTEIGDDKKILKKVLKEXEGYERP-NEGAVVTVKITGKLQDGTVFLKKG 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,831,428
Number of Sequences: 62578
Number of extensions: 231938
Number of successful extensions: 470
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 80
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)