Query 035484
Match_columns 178
No_of_seqs 129 out of 1213
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 2.5E-44 5.4E-49 317.2 20.0 169 6-177 25-202 (539)
2 TIGR03389 laccase laccase, pla 100.0 1.1E-43 2.3E-48 314.0 20.9 168 8-177 1-177 (539)
3 PLN02991 oxidoreductase 100.0 8.9E-44 1.9E-48 313.2 19.6 170 4-176 22-200 (543)
4 PLN00044 multi-copper oxidase- 100.0 2E-43 4.3E-48 313.1 20.7 171 3-175 20-201 (596)
5 PLN02168 copper ion binding / 100.0 3.5E-43 7.6E-48 309.7 20.6 166 7-175 23-197 (545)
6 PLN02354 copper ion binding / 100.0 1.6E-43 3.5E-48 312.6 18.2 168 6-176 23-199 (552)
7 PLN02792 oxidoreductase 100.0 1.3E-42 2.8E-47 305.7 18.9 166 8-176 14-189 (536)
8 TIGR03390 ascorbOXfungal L-asc 100.0 4.3E-41 9.3E-46 297.1 18.6 163 11-176 9-181 (538)
9 PLN02191 L-ascorbate oxidase 100.0 1.1E-40 2.3E-45 296.1 19.2 168 6-175 19-196 (574)
10 KOG1263 Multicopper oxidases [ 100.0 3.5E-40 7.5E-45 290.1 19.3 170 5-177 23-203 (563)
11 TIGR03388 ascorbase L-ascorbat 100.0 4.8E-40 1E-44 290.8 19.3 164 10-175 1-174 (541)
12 PLN02604 oxidoreductase 100.0 1.5E-39 3.2E-44 288.8 19.0 168 6-175 20-197 (566)
13 PF07732 Cu-oxidase_3: Multico 100.0 6.3E-39 1.4E-43 231.7 12.5 115 16-131 1-116 (117)
14 PRK10965 multicopper oxidase; 100.0 1.6E-36 3.4E-41 266.9 19.2 163 10-178 45-224 (523)
15 TIGR01480 copper_res_A copper- 100.0 3.5E-36 7.5E-41 267.2 17.1 135 11-151 46-182 (587)
16 PRK10883 FtsI repressor; Provi 100.0 2.6E-34 5.7E-39 250.4 19.3 161 12-178 47-221 (471)
17 TIGR02376 Cu_nitrite_red nitri 100.0 3.7E-33 7.9E-38 232.0 19.6 160 6-177 23-199 (311)
18 COG2132 SufI Putative multicop 99.9 3.2E-25 6.9E-30 192.8 16.3 161 12-178 34-201 (451)
19 TIGR01480 copper_res_A copper- 99.8 4E-20 8.6E-25 164.8 11.9 99 28-129 484-587 (587)
20 TIGR03095 rusti_cyanin rusticy 99.8 1.4E-19 3E-24 135.6 9.9 95 33-129 44-148 (148)
21 TIGR03096 nitroso_cyanin nitro 99.5 1.4E-13 3E-18 100.9 10.4 104 1-119 15-124 (135)
22 PF07731 Cu-oxidase_2: Multico 99.5 6.1E-14 1.3E-18 103.2 7.7 89 41-131 33-137 (138)
23 PRK10965 multicopper oxidase; 99.2 7.8E-11 1.7E-15 104.4 8.2 95 33-129 414-523 (523)
24 COG2132 SufI Putative multicop 99.1 3.9E-10 8.5E-15 98.4 8.9 99 29-130 342-450 (451)
25 PRK10883 FtsI repressor; Provi 99.0 1.7E-09 3.7E-14 94.9 8.8 94 33-131 363-470 (471)
26 PLN02835 oxidoreductase 98.9 3.6E-09 7.8E-14 94.2 8.3 87 44-131 413-514 (539)
27 TIGR03389 laccase laccase, pla 98.8 2.5E-08 5.4E-13 89.0 9.0 88 43-131 416-522 (539)
28 TIGR02656 cyanin_plasto plasto 98.8 4.7E-08 1E-12 68.3 8.2 81 41-129 16-99 (99)
29 TIGR03388 ascorbase L-ascorbat 98.7 5E-08 1.1E-12 87.1 8.9 87 43-130 417-525 (541)
30 TIGR03390 ascorbOXfungal L-asc 98.7 2.4E-07 5.3E-12 82.6 12.2 88 43-131 413-534 (538)
31 TIGR02376 Cu_nitrite_red nitri 98.7 1.2E-07 2.6E-12 79.2 9.0 104 30-136 189-304 (311)
32 PLN02604 oxidoreductase 98.7 8.3E-08 1.8E-12 86.1 8.5 87 44-131 441-549 (566)
33 TIGR03094 sulfo_cyanin sulfocy 98.6 2E-06 4.4E-11 65.7 12.5 103 33-136 75-192 (195)
34 PF00127 Copper-bind: Copper b 98.6 3.9E-07 8.4E-12 63.6 8.0 83 40-129 15-99 (99)
35 PLN02792 oxidoreductase 98.5 3.1E-07 6.8E-12 81.8 8.7 88 43-131 404-506 (536)
36 PLN02354 copper ion binding / 98.5 2.4E-07 5.3E-12 82.8 8.0 88 43-131 419-521 (552)
37 PF06525 SoxE: Sulfocyanin (So 98.5 2.3E-06 5E-11 66.4 12.3 103 33-136 76-193 (196)
38 TIGR02657 amicyanin amicyanin. 98.5 8.6E-07 1.9E-11 59.9 8.0 75 40-129 9-83 (83)
39 PF13473 Cupredoxin_1: Cupredo 98.5 2.5E-07 5.4E-12 65.0 5.5 75 37-128 30-104 (104)
40 PRK02888 nitrous-oxide reducta 98.5 9.8E-07 2.1E-11 79.1 10.4 99 22-131 534-635 (635)
41 PRK02710 plastocyanin; Provisi 98.5 1E-06 2.2E-11 63.6 8.1 73 41-129 46-119 (119)
42 PLN02191 L-ascorbate oxidase 98.4 7.5E-07 1.6E-11 80.1 8.6 87 43-131 440-548 (574)
43 PLN02168 copper ion binding / 98.4 7.6E-07 1.6E-11 79.5 8.4 85 44-129 417-516 (545)
44 PLN02991 oxidoreductase 98.4 1E-06 2.2E-11 78.7 7.9 87 44-131 412-513 (543)
45 PLN00044 multi-copper oxidase- 98.3 1.2E-06 2.7E-11 78.8 7.4 88 43-131 434-536 (596)
46 TIGR02375 pseudoazurin pseudoa 98.1 1.7E-05 3.7E-10 57.0 7.6 74 41-131 14-89 (116)
47 KOG1263 Multicopper oxidases [ 98.0 3E-05 6.6E-10 69.4 8.9 88 43-131 431-538 (563)
48 COG3794 PetE Plastocyanin [Ene 98.0 6.2E-05 1.4E-09 54.9 8.3 74 42-130 54-128 (128)
49 PF00394 Cu-oxidase: Multicopp 97.9 9.1E-05 2E-09 55.8 8.3 81 33-114 39-136 (159)
50 TIGR03102 halo_cynanin halocya 97.8 0.0002 4.3E-09 51.5 8.0 73 41-129 41-115 (115)
51 TIGR02695 azurin azurin. Azuri 96.8 0.012 2.6E-07 42.7 8.2 89 40-128 14-125 (125)
52 PF00116 COX2: Cytochrome C ox 96.8 0.015 3.3E-07 42.0 8.6 73 41-128 45-119 (120)
53 COG4454 Uncharacterized copper 96.2 0.022 4.8E-07 42.8 6.6 87 39-130 60-158 (158)
54 TIGR02866 CoxB cytochrome c ox 95.2 0.45 9.8E-06 37.2 10.9 75 42-131 117-193 (201)
55 COG4263 NosZ Nitrous oxide red 93.7 0.48 1E-05 41.7 8.5 78 42-130 558-637 (637)
56 PRK10378 inactive ferrous ion 93.5 0.44 9.6E-06 40.9 8.0 83 33-131 34-118 (375)
57 COG1622 CyoA Heme/copper-type 93.3 0.61 1.3E-05 37.9 8.1 76 41-131 136-213 (247)
58 PF12690 BsuPI: Intracellular 88.7 1.3 2.9E-05 29.6 4.9 58 42-110 16-79 (82)
59 PF05938 Self-incomp_S1: Plant 77.1 12 0.00027 25.9 6.2 69 53-131 2-71 (110)
60 MTH00140 COX2 cytochrome c oxi 75.9 18 0.00038 28.9 7.5 76 41-131 139-216 (228)
61 PF05506 DUF756: Domain of unk 74.0 23 0.00051 23.6 8.2 55 41-102 8-65 (89)
62 PF10633 NPCBM_assoc: NPCBM-as 72.7 7.3 0.00016 25.3 3.9 57 52-110 9-70 (78)
63 MTH00047 COX2 cytochrome c oxi 71.4 34 0.00073 26.7 7.9 75 42-131 116-192 (194)
64 PF04744 Monooxygenase_B: Mono 70.6 4.1 8.8E-05 34.9 2.8 43 78-120 71-114 (381)
65 TIGR03079 CH4_NH3mon_ox_B meth 70.5 28 0.00061 30.0 7.7 17 86-102 336-352 (399)
66 cd00918 Der-p2_like Several gr 70.2 20 0.00043 25.7 6.0 61 41-102 19-87 (120)
67 COG2967 ApaG Uncharacterized p 66.8 10 0.00022 27.4 3.7 46 53-99 33-84 (126)
68 PTZ00047 cytochrome c oxidase 63.8 62 0.0013 24.6 7.7 74 43-131 74-149 (162)
69 PF10989 DUF2808: Protein of u 60.6 13 0.00028 27.5 3.6 29 88-116 97-128 (146)
70 MTH00008 COX2 cytochrome c oxi 59.9 41 0.00089 26.9 6.6 75 42-131 140-216 (228)
71 COG4263 NosZ Nitrous oxide red 59.4 14 0.0003 32.9 3.9 66 42-118 548-613 (637)
72 cd00916 Npc2_like Niemann-Pick 58.0 51 0.0011 23.5 6.2 61 42-102 22-91 (123)
73 PRK05461 apaG CO2+/MG2+ efflux 55.2 29 0.00062 25.2 4.5 13 87-99 73-85 (127)
74 PRK13202 ureB urease subunit b 52.7 71 0.0015 22.4 5.9 64 43-108 12-88 (104)
75 MTH00051 COX2 cytochrome c oxi 52.4 52 0.0011 26.4 6.0 74 42-130 144-219 (234)
76 PF04379 DUF525: Protein of un 47.2 26 0.00056 23.9 3.0 13 87-99 56-68 (90)
77 TIGR01433 CyoA cytochrome o ub 45.1 1.1E+02 0.0024 24.4 6.8 75 42-131 139-215 (226)
78 COG4633 Plastocyanin domain co 43.5 1.8E+02 0.0038 23.6 7.8 83 33-131 88-170 (272)
79 COG1188 Ribosome-associated he 43.4 24 0.00052 24.6 2.4 30 33-62 36-65 (100)
80 MTH00129 COX2 cytochrome c oxi 43.3 1.5E+02 0.0033 23.6 7.4 75 42-131 140-216 (230)
81 TIGR03000 plancto_dom_1 Planct 42.8 97 0.0021 20.4 5.7 15 42-56 61-75 (75)
82 PRK07440 hypothetical protein; 39.2 36 0.00077 21.8 2.6 26 30-55 35-64 (70)
83 PRK05659 sulfur carrier protei 39.0 31 0.00066 21.4 2.3 24 32-55 33-60 (66)
84 cd00565 ThiS ThiaminS ubiquiti 34.9 42 0.00091 20.9 2.4 23 33-55 33-59 (65)
85 TIGR00192 urease_beta urease, 34.8 1.6E+02 0.0035 20.6 5.9 64 43-108 12-87 (101)
86 PF14478 DUF4430: Domain of un 34.7 43 0.00093 21.1 2.5 27 28-55 39-68 (68)
87 PRK06437 hypothetical protein; 32.2 62 0.0013 20.5 2.9 24 32-55 38-61 (67)
88 PRK13203 ureB urease subunit b 31.9 1.8E+02 0.0039 20.3 5.9 65 43-109 12-88 (102)
89 PRK06488 sulfur carrier protei 30.4 50 0.0011 20.5 2.2 24 32-55 32-59 (65)
90 KOG4387 Ornithine decarboxylas 30.2 21 0.00045 27.6 0.4 29 45-73 72-100 (191)
91 smart00363 S4 S4 RNA-binding d 29.6 61 0.0013 18.5 2.5 24 33-56 28-52 (60)
92 TIGR02988 YaaA_near_RecF S4 do 29.5 38 0.00082 20.6 1.5 22 33-54 36-58 (59)
93 PRK08364 sulfur carrier protei 28.9 55 0.0012 20.8 2.3 23 32-54 41-63 (70)
94 PRK13205 ureB urease subunit b 28.9 2.5E+02 0.0055 21.2 5.9 67 43-111 12-90 (162)
95 PRK13204 ureB urease subunit b 27.8 2.7E+02 0.0057 21.1 5.9 65 43-109 35-111 (159)
96 PF09962 DUF2196: Uncharacteri 27.7 66 0.0014 20.4 2.3 34 46-82 9-55 (62)
97 PRK01777 hypothetical protein; 27.1 48 0.001 22.8 1.8 25 30-55 50-74 (95)
98 TIGR03833 conserved hypothetic 26.4 76 0.0016 20.1 2.4 34 46-82 8-54 (62)
99 MTH00023 COX2 cytochrome c oxi 26.0 2.8E+02 0.006 22.3 6.3 75 42-131 151-227 (240)
100 cd05468 pVHL von Hippel-Landau 25.9 1.3E+02 0.0029 22.0 4.1 42 47-97 4-45 (141)
101 TIGR03079 CH4_NH3mon_ox_B meth 25.4 2.5E+02 0.0055 24.4 6.1 37 43-83 100-136 (399)
102 PF00386 C1q: C1q domain; Int 25.2 87 0.0019 21.9 3.0 18 42-59 91-108 (127)
103 PRK13198 ureB urease subunit b 25.2 3E+02 0.0066 20.7 6.3 65 43-109 40-116 (158)
104 PRK09838 periplasmic copper-bi 25.1 76 0.0017 22.6 2.6 25 45-69 88-112 (115)
105 PF14451 Ub-Mut7C: Mut7-C ubiq 24.7 90 0.002 20.7 2.7 27 28-55 48-74 (81)
106 COG2104 ThiS Sulfur transfer p 24.6 97 0.0021 19.9 2.8 25 31-55 34-62 (68)
107 TIGR01432 QOXA cytochrome aa3 24.4 2.8E+02 0.006 21.8 6.0 75 42-131 130-206 (217)
108 MTH00038 COX2 cytochrome c oxi 24.4 3E+02 0.0066 21.9 6.2 73 42-129 140-214 (229)
109 PF00927 Transglut_C: Transglu 24.2 76 0.0016 21.6 2.5 54 51-108 18-81 (107)
110 cd08058 MPN_euk_mb Mpr1p, Pad1 24.1 34 0.00074 24.0 0.7 8 108-115 68-75 (119)
111 TIGR01683 thiS thiamine biosyn 24.1 96 0.0021 19.1 2.7 24 32-55 31-58 (64)
112 PRK13201 ureB urease subunit b 24.0 3E+02 0.0065 20.3 6.0 67 43-111 12-90 (136)
113 PRK06944 sulfur carrier protei 23.6 73 0.0016 19.6 2.1 24 32-55 32-59 (65)
114 PRK07696 sulfur carrier protei 23.5 84 0.0018 19.8 2.4 26 30-55 32-61 (67)
115 MTH00098 COX2 cytochrome c oxi 23.2 3.7E+02 0.0081 21.4 6.5 74 42-130 140-215 (227)
116 PF07006 DUF1310: Protein of u 23.2 1.5E+02 0.0032 21.4 3.8 35 3-38 56-90 (122)
117 cd00407 Urease_beta Urease bet 22.9 2.7E+02 0.0059 19.4 6.3 65 43-109 12-88 (101)
118 PF09394 Inhibitor_I42: Chagas 22.6 2.2E+02 0.0048 18.5 4.5 20 44-63 1-20 (92)
119 PRK08053 sulfur carrier protei 22.4 89 0.0019 19.5 2.3 25 31-55 32-60 (66)
120 MTH00168 COX2 cytochrome c oxi 21.9 4E+02 0.0087 21.1 6.5 74 42-130 140-215 (225)
121 PLN03148 Blue copper-like prot 21.6 2.4E+02 0.0053 21.5 4.9 31 99-131 89-120 (167)
122 KOG4063 Major epididymal secre 21.2 3.2E+02 0.0069 20.7 5.3 62 40-102 46-122 (158)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=2.5e-44 Score=317.18 Aligned_cols=169 Identities=27% Similarity=0.544 Sum_probs=148.4
Q ss_pred cCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCc
Q 035484 6 SSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYI 85 (178)
Q Consensus 6 ~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~ 85 (178)
+.+.+++|+|++++....++|..+.+ |+|||++|||+|++++||+|+|+|+|.++++++|||||++++.++|+||+++
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~-~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~- 102 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQV-ILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG- 102 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEE-EEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-
Confidence 45688999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcC--CCCCCCCCCCceEEEEE-chhhhh----hh-
Q 035484 86 TQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR--MPYPFSAPIQAEIPIIF-DVNAVE----ND- 156 (178)
Q Consensus 86 ~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~--~~~~~~~~~d~e~~l~l-d~~~~~----~~- 156 (178)
+||||+||++++|+|++.+++||||||||...|+. ||+|+|||+++ ++.+++ .+|+|++|+| ||+... .+
T Consensus 103 tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~~d~e~~l~l~Dw~~~~~~~~~~~ 181 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFP-LPDGDFTLLVGDWYKTSHKTLQQR 181 (539)
T ss_pred CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCC-CCCceEEEEeeccccCCHHHHHHH
Confidence 99999999999999987678999999999999987 99999999865 344443 3568999999 886421 12
Q ss_pred cccCCCCCCCceEEECCCCCC
Q 035484 157 MKYGGGPDSSDACTINGLPGP 177 (178)
Q Consensus 157 ~~~~~~~~~~~~~liNG~~~p 177 (178)
+..+.....+|.+||||+..+
T Consensus 182 ~~~g~~~~~~d~~liNG~~~~ 202 (539)
T PLN02835 182 LDSGKVLPFPDGVLINGQTQS 202 (539)
T ss_pred hhcCCCCCCCceEEEccccCc
Confidence 445555568999999999764
No 2
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.1e-43 Score=314.01 Aligned_cols=168 Identities=57% Similarity=1.042 Sum_probs=147.5
Q ss_pred CceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccc
Q 035484 8 QTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQ 87 (178)
Q Consensus 8 ~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~ 87 (178)
+++|+|+|+|++..+.++|..+.+ |+|||++|||+|++++||+|+|+|+|.++++++|||||+.+..++|+||++++||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~-~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq 79 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSI-LTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQ 79 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEE-EEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCccccc
Confidence 467999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEecccCCceEEeechhhHhhccEEEEEEEcCC--CCCCCCCCCceEEEEE-chhh-----hhhh-cc
Q 035484 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPRM--PYPFSAPIQAEIPIIF-DVNA-----VEND-MK 158 (178)
Q Consensus 88 ~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~Gl~G~liV~~~~--~~~~~~~~d~e~~l~l-d~~~-----~~~~-~~ 158 (178)
|+|+||++++|+|++.+++||||||||...++.||+|+|||+++. +.+++ .+|+|++|+| ||+. ++.. ..
T Consensus 80 ~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (539)
T TIGR03389 80 CPIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFP-KPDREVPIILGEWWNADVEAVINQANQ 158 (539)
T ss_pred CCcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCC-CCCceEEEEecccccCCHHHHHHHHHh
Confidence 999999999999997669999999999987777999999999874 33443 3568999999 8864 2222 33
Q ss_pred cCCCCCCCceEEECCCCCC
Q 035484 159 YGGGPDSSDACTINGLPGP 177 (178)
Q Consensus 159 ~~~~~~~~~~~liNG~~~p 177 (178)
.+..+.++|++|||||.++
T Consensus 159 ~~~~~~~~d~~liNG~~~~ 177 (539)
T TIGR03389 159 TGGAPNVSDAYTINGHPGP 177 (539)
T ss_pred cCCCCCccceEEECCCcCC
Confidence 4445567899999999865
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=8.9e-44 Score=313.15 Aligned_cols=170 Identities=27% Similarity=0.503 Sum_probs=148.8
Q ss_pred CCcCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC
Q 035484 4 FSSSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA 83 (178)
Q Consensus 4 ~~~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~ 83 (178)
..+.+.+++|+|+|++....++|..+.+ |+|||++|||+|++++||+|+|+|+|.++++++|||||+++..++|+||++
T Consensus 22 ~~~~~~~~~~~~~vt~~~~~pdG~~r~~-~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~ 100 (543)
T PLN02991 22 VAAEDPYRFFEWHVTYGNISPLGVAQQG-ILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVY 100 (543)
T ss_pred hhccCceEEEEEEEEEEEeCCCCEEEEE-EEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCC
Confidence 3456789999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCC--CCCCCCCCCceEEEEE-chhhhh-----
Q 035484 84 YITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRM--PYPFSAPIQAEIPIIF-DVNAVE----- 154 (178)
Q Consensus 84 ~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~--~~~~~~~~d~e~~l~l-d~~~~~----- 154 (178)
+ +||||+||++++|+|++.+++||||||||...|+. ||+|+|||++++ +.|+. .+|+|++|+| ||+...
T Consensus 101 ~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~~d~d~~i~l~DW~~~~~~~~~ 178 (543)
T PLN02991 101 G-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFP-APADDYTVLIGDWYKTNHKDLR 178 (543)
T ss_pred C-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccc-cccceeEEEecceecCCHHHHH
Confidence 8 89999999999999998668999999999998887 999999999873 34443 3568999999 886521
Q ss_pred hhcccCCCCCCCceEEECCCCC
Q 035484 155 NDMKYGGGPDSSDACTINGLPG 176 (178)
Q Consensus 155 ~~~~~~~~~~~~~~~liNG~~~ 176 (178)
..+..+...+.+|++|||||..
T Consensus 179 ~~~~~~~~~~~~d~~liNG~~~ 200 (543)
T PLN02991 179 AQLDNGGKLPLPDGILINGRGS 200 (543)
T ss_pred HHhhcCCCCCCCCEEEEccCCC
Confidence 1234454556899999999964
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2e-43 Score=313.09 Aligned_cols=171 Identities=26% Similarity=0.511 Sum_probs=147.8
Q ss_pred CCCcCCceEEEEEEEEEEEEEecC--ceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCC
Q 035484 3 PFSSSQTIKSFLFNVEWKTVSRLC--NTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSD 80 (178)
Q Consensus 3 ~~~~~~~~~~~~l~i~~~~~~~~g--~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~D 80 (178)
|+.+.+.+++|+|++++....++| ..+.+ ++|||++|||+|++++||+|+|+|+|.++++++|||||++++.++|+|
T Consensus 20 ~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~v-i~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~D 98 (596)
T PLN00044 20 PAGAGDPYAYYDWEVSYVSAAPLGGVKKQEA-IGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQD 98 (596)
T ss_pred ccccCCceEEEEEEEEEEEEccCCCceeeEE-EEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCcccc
Confidence 344667889999999999999999 44578 999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCC--CCCCCCCCCceEEEEE-chhhh---
Q 035484 81 GPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRM--PYPFSAPIQAEIPIIF-DVNAV--- 153 (178)
Q Consensus 81 G~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~--~~~~~~~~d~e~~l~l-d~~~~--- 153 (178)
|+++ +||||+||++++|+|++.+++||||||||...|++ ||+|+|||++++ +.|+...+++|.+|+| ||++.
T Consensus 99 Gv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~ 177 (596)
T PLN00044 99 GVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHR 177 (596)
T ss_pred CCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHH
Confidence 9988 99999999999999998679999999999999997 999999999873 4455444447999999 98652
Q ss_pred -hhh-cccCCCCCCCceEEECCCC
Q 035484 154 -END-MKYGGGPDSSDACTINGLP 175 (178)
Q Consensus 154 -~~~-~~~~~~~~~~~~~liNG~~ 175 (178)
+.+ +..+..+..+|.+||||+.
T Consensus 178 ~~~~~l~~g~~~~~~d~~lING~g 201 (596)
T PLN00044 178 ALRRALDAGDLLGAPDGVLINAFG 201 (596)
T ss_pred HHHHHHhcCCCCCCCCceEEcccC
Confidence 222 4445444578999999984
No 5
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.5e-43 Score=309.71 Aligned_cols=166 Identities=25% Similarity=0.458 Sum_probs=145.7
Q ss_pred CCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcc
Q 035484 7 SQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYIT 86 (178)
Q Consensus 7 ~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~ 86 (178)
.+.+++|+|+|++....++|..+.+ |+|||++|||+|++++||+|+|+|+|.+++++++||||++++.++|+||+++ +
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~-~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-t 100 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQV-IVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-T 100 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEE-EEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-C
Confidence 4788999999999999999999999 9999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCC--CCCCCCCCCceEEEEE-chhhh----hhh-c
Q 035484 87 QCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRM--PYPFSAPIQAEIPIIF-DVNAV----END-M 157 (178)
Q Consensus 87 ~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~--~~~~~~~~d~e~~l~l-d~~~~----~~~-~ 157 (178)
||||+||++++|+|++.+++||||||||...|+. ||+|+|||++++ +.|++ .+|+|++|+| ||+.. +.. +
T Consensus 101 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~-~~d~e~~l~l~Dw~~~~~~~~~~~~ 179 (545)
T PLN02168 101 NCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFP-KPDEEYDILIGDWFYADHTVMRASL 179 (545)
T ss_pred cCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcC-cccceeeEEEEecCCCCHHHHHhhh
Confidence 9999999999999998668999999999999987 999999999873 33443 3568999999 88642 112 3
Q ss_pred ccCCCCCCCceEEECCCC
Q 035484 158 KYGGGPDSSDACTINGLP 175 (178)
Q Consensus 158 ~~~~~~~~~~~~liNG~~ 175 (178)
..+.....+|.+||||+.
T Consensus 180 ~~g~~~~~~d~~liNG~~ 197 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRG 197 (545)
T ss_pred hcCCCCCCCCEEEEeccC
Confidence 333334578999999995
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.6e-43 Score=312.62 Aligned_cols=168 Identities=26% Similarity=0.519 Sum_probs=146.8
Q ss_pred cCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCc
Q 035484 6 SSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYI 85 (178)
Q Consensus 6 ~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~ 85 (178)
+.+.+++|+|++++....++|..+.+ |+|||++|||+|++++||+|+|+|+|.++++++|||||+.++.++|+||+++
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~-~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~- 100 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQV-ILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG- 100 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEE-EEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-
Confidence 34678999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCC--CCCCCCCCCceEEEEE-chhhh----hhh-
Q 035484 86 TQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRM--PYPFSAPIQAEIPIIF-DVNAV----END- 156 (178)
Q Consensus 86 ~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~--~~~~~~~~d~e~~l~l-d~~~~----~~~- 156 (178)
+||||+||++++|+|++.+++||||||||...|+. ||+|+|||++++ +.+++. +|+|++|+| ||++. +..
T Consensus 101 TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~-~d~e~~l~l~Dw~~~~~~~~~~~ 179 (552)
T PLN02354 101 TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYAD-PEDDYTVLIGDWYTKSHTALKKF 179 (552)
T ss_pred CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCC-cCceEEEEeeeeccCCHHHHHHH
Confidence 99999999999999997678999999999999987 999999999884 445532 458999999 88652 122
Q ss_pred cccCCCCCCCceEEECCCCC
Q 035484 157 MKYGGGPDSSDACTINGLPG 176 (178)
Q Consensus 157 ~~~~~~~~~~~~~liNG~~~ 176 (178)
+..+.....+|++||||+..
T Consensus 180 ~~~g~~~~~~d~~liNG~~~ 199 (552)
T PLN02354 180 LDSGRTLGRPDGVLINGKSG 199 (552)
T ss_pred HhcCCCCCCCCeEEEeCCcC
Confidence 33444445789999999963
No 7
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.3e-42 Score=305.74 Aligned_cols=166 Identities=26% Similarity=0.489 Sum_probs=144.2
Q ss_pred CceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccc
Q 035484 8 QTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQ 87 (178)
Q Consensus 8 ~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~ 87 (178)
-++++|+|++++....++|..+.+ |+|||++|||+|++++||+|+|+|+|.+++++++||||++++.++|+||+++ +|
T Consensus 14 ~~~~~~~~~vt~~~~~pdg~~~~~-~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 14 DDTLFYNWRVTYGNISLLTLPRRG-ILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred CCeEEEEEEEEEEEeCCCCeEEEE-EEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 455799999999999999999999 9999999999999999999999999999999999999999999999999988 89
Q ss_pred cccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcC--CCCCCCCCCCceEEEEE-chhhh----hhh-cc
Q 035484 88 CPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR--MPYPFSAPIQAEIPIIF-DVNAV----END-MK 158 (178)
Q Consensus 88 ~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~--~~~~~~~~~d~e~~l~l-d~~~~----~~~-~~ 158 (178)
|||+||++++|+|++.+++||||||||...|+. ||+|+|||.++ ++.+++ .+|+|++|+| ||++. +.+ +.
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~-~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFP-EPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCC-cccceeEEEecccccCCHHHHHHHhh
Confidence 999999999999998678999999999998886 99999999876 344554 3568999999 88742 222 33
Q ss_pred cCCC-CCCCceEEECCCCC
Q 035484 159 YGGG-PDSSDACTINGLPG 176 (178)
Q Consensus 159 ~~~~-~~~~~~~liNG~~~ 176 (178)
.+.. +..+|++||||+..
T Consensus 171 ~g~~~~~~~d~~liNG~~~ 189 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGV 189 (536)
T ss_pred ccCcCCCCCCEEEEeccCC
Confidence 4433 34889999999964
No 8
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.3e-41 Score=297.11 Aligned_cols=163 Identities=25% Similarity=0.491 Sum_probs=141.0
Q ss_pred EEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCC-CCcceeecCccccCCCCCCCCCCccccc
Q 035484 11 KSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVA-QNTTIRWHGIRQLRTGWSDGPAYITQCP 89 (178)
Q Consensus 11 ~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~-~~~~~H~HG~~~~~~~~~DG~~~~~~~~ 89 (178)
..|+|+++++.+.++|..+.+ |+|||++|||+|++++||+|+|+|+|.++ +++++||||+.++.++|+||+|+++||+
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~-~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcp 87 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYS-VVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWP 87 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEE-EEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCC
Confidence 468999999999999999999 99999999999999999999999999997 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEec-ccCCceEEeechhhHhhccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhh-----hhcccCC-
Q 035484 90 IKGGQSYTYEFTIV-NQRGTLLWHAHHSWQRASVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVE-----NDMKYGG- 161 (178)
Q Consensus 90 i~pg~~~~y~~~~~-~~~Gt~~yH~h~~~~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~-----~~~~~~~- 161 (178)
|+||++++|+|++. +++||||||||...|+.||+|+|||+++++.++ .+|+|++|+| ||+... ..+....
T Consensus 88 I~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~--~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 88 IPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY--KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC--CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 99999999999874 589999999999888889999999998854444 4678999999 986422 1111111
Q ss_pred -CCCCCceEEECCCCC
Q 035484 162 -GPDSSDACTINGLPG 176 (178)
Q Consensus 162 -~~~~~~~~liNG~~~ 176 (178)
....++.+|||||..
T Consensus 166 ~~~~~~d~~liNG~~~ 181 (538)
T TIGR03390 166 TWSGETEAVLLNGKSG 181 (538)
T ss_pred ccCCCCceEEECCccc
Confidence 124579999999964
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.1e-40 Score=296.13 Aligned_cols=168 Identities=29% Similarity=0.542 Sum_probs=143.5
Q ss_pred cCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCC-CCcceeecCccccCCCCCCCCCC
Q 035484 6 SSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVA-QNTTIRWHGIRQLRTGWSDGPAY 84 (178)
Q Consensus 6 ~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~-~~~~~H~HG~~~~~~~~~DG~~~ 84 (178)
+.+++++|+|++++....++|..+.+ ++|||++|||+|++++||+|+|+|+|.++ ++++|||||+.++.++|+||+++
T Consensus 19 ~~~~~~~~~~~vt~~~~~pdG~~~~v-~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g 97 (574)
T PLN02191 19 ASAAVREYTWEVEYKYWWPDCKEGAV-MTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97 (574)
T ss_pred hccceEEEEEEEEEEEeccCCceeeE-EEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc
Confidence 34678999999999999999999999 99999999999999999999999999997 78999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhh-h----hc
Q 035484 85 ITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVE-N----DM 157 (178)
Q Consensus 85 ~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~-~----~~ 157 (178)
++||+|+||++++|+|++ .++||||||||...|+. ||+|+|||+++.....+..+|+|++|+| ||++.. . .+
T Consensus 98 vtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 98 VTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred cccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhh
Confidence 999999999999999997 79999999999999987 9999999997622122235789999999 996521 1 11
Q ss_pred c--cCCCCCCCceEEECCCC
Q 035484 158 K--YGGGPDSSDACTINGLP 175 (178)
Q Consensus 158 ~--~~~~~~~~~~~liNG~~ 175 (178)
. .......+|.+||||+.
T Consensus 177 ~~~~~~~~~~~d~~liNG~g 196 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRG 196 (574)
T ss_pred ccCCCCcCCCCCceEECCCC
Confidence 1 11112468999999975
No 10
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-40 Score=290.10 Aligned_cols=170 Identities=42% Similarity=0.799 Sum_probs=152.0
Q ss_pred CcCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCC
Q 035484 5 SSSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY 84 (178)
Q Consensus 5 ~~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~ 84 (178)
.+.+.++.|+|+++.....++|.++.+ ++|||++|||+|++++||+|.|+|.|.++++.+|||||+++...+|+|| ++
T Consensus 23 ~a~~~~~~~~~~v~~~~~s~l~~~~~v-i~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~ 100 (563)
T KOG1263|consen 23 QAEAPIRFHTWKVTYGTASPLCVEKQV-ITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VY 100 (563)
T ss_pred hhcCceEEEEeeEEeeeeccCCcccee-EeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-Cc
Confidence 367899999999999999999999999 9999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcC--CCCCCCCCCCceEEEEE-chhhh-----h-
Q 035484 85 ITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR--MPYPFSAPIQAEIPIIF-DVNAV-----E- 154 (178)
Q Consensus 85 ~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~--~~~~~~~~~d~e~~l~l-d~~~~-----~- 154 (178)
+|||||+||++++|+|++.+|.||||||+|...+++ |++|+|||.++ .+.|++. +|+|++|++ ||+.. +
T Consensus 101 ~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~-pd~E~~ill~dW~~~~~~~~l~ 179 (563)
T KOG1263|consen 101 ITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPK-PDKEFTILLGDWYKNLNHKNLK 179 (563)
T ss_pred cccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCC-CCceeEEEeEeeccccCHHHHH
Confidence 999999999999999999889999999999999998 99999999999 4566764 459999999 88652 1
Q ss_pred hhc-ccCCCCCCCceEEECCCCCC
Q 035484 155 NDM-KYGGGPDSSDACTINGLPGP 177 (178)
Q Consensus 155 ~~~-~~~~~~~~~~~~liNG~~~p 177 (178)
..+ ..+..+..+|.++|||++++
T Consensus 180 ~~~~~~~~~p~~~D~~~iNg~~g~ 203 (563)
T KOG1263|consen 180 NFLDRTGALPNPSDGVLINGRSGF 203 (563)
T ss_pred HhhccCCCCCCCCCceEECCCCCc
Confidence 222 33444545999999999854
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.8e-40 Score=290.80 Aligned_cols=164 Identities=29% Similarity=0.558 Sum_probs=140.7
Q ss_pred eEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCC-CCcceeecCccccCCCCCCCCCCcccc
Q 035484 10 IKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVA-QNTTIRWHGIRQLRTGWSDGPAYITQC 88 (178)
Q Consensus 10 ~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~-~~~~~H~HG~~~~~~~~~DG~~~~~~~ 88 (178)
+++|+|++++..+.+||..+.+ |+|||++|||+|++++||+|+|+|+|.+. +++++||||+.+..++|+||+++++||
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~-~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~ 79 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLV-IGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQC 79 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeE-EEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccC
Confidence 4789999999999999999999 99999999999999999999999999985 899999999999988999999999999
Q ss_pred ccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhhh-----hccc-C
Q 035484 89 PIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVEN-----DMKY-G 160 (178)
Q Consensus 89 ~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~~-----~~~~-~ 160 (178)
+|+||++++|+|++ .++||||||||...|+. ||+|+|||+++...+.+..+|+|++|+| ||++... .+.. .
T Consensus 80 ~I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 80 AINPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred CcCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCC
Confidence 99999999999997 78999999999998887 9999999998832222335779999999 9865321 1111 1
Q ss_pred -CCCCCCceEEECCCC
Q 035484 161 -GGPDSSDACTINGLP 175 (178)
Q Consensus 161 -~~~~~~~~~liNG~~ 175 (178)
.....+|.+||||+.
T Consensus 159 ~~~~~~~d~~liNG~g 174 (541)
T TIGR03388 159 MRWIGEPQSLLINGRG 174 (541)
T ss_pred CcCCCCCcceEECCCC
Confidence 111467999999984
No 12
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.5e-39 Score=288.82 Aligned_cols=168 Identities=31% Similarity=0.542 Sum_probs=143.9
Q ss_pred cCCceEEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCC-CCCcceeecCccccCCCCCCCCCC
Q 035484 6 SSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRV-AQNTTIRWHGIRQLRTGWSDGPAY 84 (178)
Q Consensus 6 ~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~-~~~~~~H~HG~~~~~~~~~DG~~~ 84 (178)
+.+++++|+|+|+++...++|..+.+ |+|||++|||+|++++||+|+|+|+|.+ .++++|||||+.+...+|+||+++
T Consensus 20 ~~~~~~~y~~~vt~~~~~pdG~~r~~-~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~ 98 (566)
T PLN02604 20 AEARIRRYKWEVKYEYKSPDCFKKLV-ITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98 (566)
T ss_pred ccCcEEEEEEEEEEEEECCCCceeeE-EEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCc
Confidence 55789999999999999999999999 9999999999999999999999999998 589999999999988889999999
Q ss_pred ccccccCCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhhh-----hc
Q 035484 85 ITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVEN-----DM 157 (178)
Q Consensus 85 ~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~~-----~~ 157 (178)
++||+|.||++++|+|++ +++||||||||...|+. ||+|+|||++++..+.+..+|+|.+|+| ||++... .+
T Consensus 99 ~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~ 177 (566)
T PLN02604 99 VTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGL 177 (566)
T ss_pred cccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhh
Confidence 999999999999999997 89999999999999987 9999999998832222235678999999 9865321 11
Q ss_pred ccC--CCCCCCceEEECCCC
Q 035484 158 KYG--GGPDSSDACTINGLP 175 (178)
Q Consensus 158 ~~~--~~~~~~~~~liNG~~ 175 (178)
... .....++.+||||+.
T Consensus 178 ~~~~~~~~~~~d~~liNG~G 197 (566)
T PLN02604 178 SSIPFDWVGEPQSLLIQGKG 197 (566)
T ss_pred ccCCCccCCCCCceEEcCCC
Confidence 111 112367999999984
No 13
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=6.3e-39 Score=231.73 Aligned_cols=115 Identities=45% Similarity=0.737 Sum_probs=107.3
Q ss_pred EEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCe
Q 035484 16 NVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQS 95 (178)
Q Consensus 16 ~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~ 95 (178)
+|+++.++++|..+.+ |+|||++|||+|++++||+|+|+|+|.+++++++||||+.++..+|+||+++.++++|.||++
T Consensus 1 ~v~~~~~~~~~~~~~~-~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~ 79 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKV-WTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGES 79 (117)
T ss_dssp -EEEEEEETTSTEEEE-EEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEE
T ss_pred CeeEEEEEeCCcEEEE-EEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecc
Confidence 4788899999988888 999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 96 YTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 96 ~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
++|+|++.+++||||||||...+.. ||+|+|||+++
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999998666999999999998765 99999999986
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.6e-36 Score=266.93 Aligned_cols=163 Identities=23% Similarity=0.300 Sum_probs=132.2
Q ss_pred eEEEEEEEEEEEEEecCcee-EEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcccc
Q 035484 10 IKSFLFNVEWKTVSRLCNTK-LLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQC 88 (178)
Q Consensus 10 ~~~~~l~i~~~~~~~~g~~~-~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~ 88 (178)
...|+|+++++..++++..+ .+ |+|||++|||+|++++||+|+|+|+|.+++++++||||+.++.. +||+| ||
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~-~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~ 118 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATAT-WGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QG 118 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEE-EEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CC
Confidence 45699999999999987554 57 99999999999999999999999999999999999999999875 99986 89
Q ss_pred ccCCCCeEEEEEEecccCCceEEeech----hhHhh-ccEEEEEEEcCCC--CCCCCCCC-ceEEEEE-chhhhhhh-c-
Q 035484 89 PIKGGQSYTYEFTIVNQRGTLLWHAHH----SWQRA-SVYGAFIIYPRMP--YPFSAPIQ-AEIPIIF-DVNAVEND-M- 157 (178)
Q Consensus 89 ~i~pg~~~~y~~~~~~~~Gt~~yH~h~----~~~~~-Gl~G~liV~~~~~--~~~~~~~d-~e~~l~l-d~~~~~~~-~- 157 (178)
+|.||++++|+|++.+++||||||||. ..|.. ||+|+|||++++. .+++..++ +|++|+| ||...... +
T Consensus 119 ~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~ 198 (523)
T PRK10965 119 IIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQID 198 (523)
T ss_pred CCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCcee
Confidence 999999999999986678999999997 44554 9999999999833 23444343 6899999 76431111 1
Q ss_pred ---c--cCCCCCCCceEEECCCCCCC
Q 035484 158 ---K--YGGGPDSSDACTINGLPGPL 178 (178)
Q Consensus 158 ---~--~~~~~~~~~~~liNG~~~p~ 178 (178)
. ....+..+|.+||||+.+|+
T Consensus 199 ~~~~~~~~~~g~~gd~~lVNG~~~p~ 224 (523)
T PRK10965 199 YQLDVMTAAVGWFGDTLLTNGAIYPQ 224 (523)
T ss_pred ccccccccccCccCCeEEECCcccce
Confidence 1 11224578999999999885
No 15
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.5e-36 Score=267.15 Aligned_cols=135 Identities=31% Similarity=0.546 Sum_probs=124.8
Q ss_pred EEEEEEEEEEEEEecCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcccccc
Q 035484 11 KSFLFNVEWKTVSRLCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPI 90 (178)
Q Consensus 11 ~~~~l~i~~~~~~~~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i 90 (178)
++|+|++++..++++|..+.+ |+|||++|||+|++++||+|+|+|+|.+++++++||||+..+.. +||+|+++||+|
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~-~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I 122 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPA-ITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGI 122 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEE-EEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCccccccc
Confidence 789999999999999998888 99999999999999999999999999999999999999998754 999999999999
Q ss_pred CCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chh
Q 035484 91 KGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVN 151 (178)
Q Consensus 91 ~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~ 151 (178)
+||++++|+|++ .++||||||||...|.. ||+|+|||++++..++ .+|+|++|+| ||.
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~--~~D~E~vl~L~Dw~ 182 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV--RADREHVVLLSDWT 182 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC--CCCceEEEEeeecc
Confidence 999999999997 78999999999988886 9999999998744444 5679999999 875
No 16
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.6e-34 Score=250.39 Aligned_cols=161 Identities=19% Similarity=0.347 Sum_probs=128.8
Q ss_pred EEEEEEEEEEEEecC-ceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcccccc
Q 035484 12 SFLFNVEWKTVSRLC-NTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPI 90 (178)
Q Consensus 12 ~~~l~i~~~~~~~~g-~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i 90 (178)
.++|+++.+..++++ ..+.+ |+|||++|||+|++++||+|+|+|+|.+++++++||||+.++.. ..||++ ++|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v-~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I 120 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASV-WGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMM 120 (471)
T ss_pred cEEEEEEEeEEEecCCceeeE-EEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccC
Confidence 379999999999986 46677 99999999999999999999999999999999999999998865 356553 589
Q ss_pred CCCCeEEEEEEecccCCceEEeechhh----Hhh-ccEEEEEEEcCCC--CCCCCCCC-ceEEEEE-chhhhh-hhc---
Q 035484 91 KGGQSYTYEFTIVNQRGTLLWHAHHSW----QRA-SVYGAFIIYPRMP--YPFSAPIQ-AEIPIIF-DVNAVE-NDM--- 157 (178)
Q Consensus 91 ~pg~~~~y~~~~~~~~Gt~~yH~h~~~----~~~-Gl~G~liV~~~~~--~~~~~~~d-~e~~l~l-d~~~~~-~~~--- 157 (178)
.||++++|+|++.+++||||||||... |.. ||+|++||+++.. .+++..++ +|++|+| ||.... ...
T Consensus 121 ~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~ 200 (471)
T PRK10883 121 SPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN 200 (471)
T ss_pred CCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc
Confidence 999999999998677999999999765 333 9999999999833 34444444 4899999 864311 111
Q ss_pred ccCCCCCCCceEEECCCCCCC
Q 035484 158 KYGGGPDSSDACTINGLPGPL 178 (178)
Q Consensus 158 ~~~~~~~~~~~~liNG~~~p~ 178 (178)
........+|.+||||+.+|+
T Consensus 201 ~~~~~g~~gd~~lvNG~~~p~ 221 (471)
T PRK10883 201 EPGSGGFVGDTLLVNGVQSPY 221 (471)
T ss_pred ccccCCccCCeeEECCccCCe
Confidence 112224578999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.7e-33 Score=231.97 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=129.1
Q ss_pred cCCceEEEEEEEEEEEEEe-cCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCC--CCcceeecCccccCCCCCCCC
Q 035484 6 SSQTIKSFLFNVEWKTVSR-LCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVA--QNTTIRWHGIRQLRTGWSDGP 82 (178)
Q Consensus 6 ~~~~~~~~~l~i~~~~~~~-~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~--~~~~~H~HG~~~~~~~~~DG~ 82 (178)
+.+.+++|+|++++...++ +|..+.+ |+|||++|||+|++++||+|+|+|+|.+. .+|.+||||.. ++||.
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~-~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~ 96 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQA-MTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGG 96 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEE-EEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCC
Confidence 5568899999999999886 5788888 99999999999999999999999999985 68999999963 37887
Q ss_pred CCccccccCCCCeEEEEEEecccCCceEEeech----hhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhhhh
Q 035484 83 AYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH----SWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVEND 156 (178)
Q Consensus 83 ~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~----~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~~~ 156 (178)
+..++ |.||++++|+|.+ +++||||||||. ..|.. ||+|+|||+++++.+ .+|+|++|++ ||+....+
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~---~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP---EYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc---CcceeEEEeeeeEeccccc
Confidence 77665 9999999999987 789999999995 44655 999999999985433 4568999999 87542111
Q ss_pred -----cc--cC-CCCCCCceEEECCCCCC
Q 035484 157 -----MK--YG-GGPDSSDACTINGLPGP 177 (178)
Q Consensus 157 -----~~--~~-~~~~~~~~~liNG~~~p 177 (178)
.. .+ +....++.++|||+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~ 199 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGA 199 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCC
Confidence 00 00 12346799999999764
No 18
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=3.2e-25 Score=192.76 Aligned_cols=161 Identities=27% Similarity=0.367 Sum_probs=125.2
Q ss_pred EEEEEEEEEEEEe-cCceeEEEEEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcccccc
Q 035484 12 SFLFNVEWKTVSR-LCNTKLLLLTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPI 90 (178)
Q Consensus 12 ~~~l~i~~~~~~~-~g~~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i 90 (178)
+..+......... .+..... |++||++|||+|++++||+|++.++|.+.+++++||||+..+. .+||++..+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~ 110 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATV-WGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPP 110 (451)
T ss_pred ceEEeecccceeeecCCCcee-EEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCC
Confidence 3344444444444 4566777 9999999999999999999999999999988999999988874 4999999999999
Q ss_pred CCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCCCCCCCceEEEEE-chhhhhhh-c-c--cCCCCC
Q 035484 91 KGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPFSAPIQAEIPIIF-DVNAVEND-M-K--YGGGPD 164 (178)
Q Consensus 91 ~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~d~e~~l~l-d~~~~~~~-~-~--~~~~~~ 164 (178)
.++++++|.|+. +++||||||+|.+.|.. ||.|++||+++.+.+. .+|++..+++ +|...... . . ......
T Consensus 111 ~~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~--~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 187 (451)
T COG2132 111 GPGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL--GVDDEPVILQDDWLDEDGTDLYQEGPAMGGF 187 (451)
T ss_pred CCCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC--CCCceEEEEEeeeecCCCCccccCCccccCC
Confidence 999999999986 66789999999999886 9999999999955554 4544555555 55422211 1 1 222445
Q ss_pred CCceEEECCCCCCC
Q 035484 165 SSDACTINGLPGPL 178 (178)
Q Consensus 165 ~~~~~liNG~~~p~ 178 (178)
.++..+|||+.+|+
T Consensus 188 ~g~~~~vnG~~~p~ 201 (451)
T COG2132 188 PGDTLLVNGAILPF 201 (451)
T ss_pred CCCeEEECCCccce
Confidence 78999999988875
No 19
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.83 E-value=4e-20 Score=164.79 Aligned_cols=99 Identities=14% Similarity=0.280 Sum_probs=84.4
Q ss_pred eeEEEEEEcCccCC--ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCC--ccccccCCCCeEEEEEEec
Q 035484 28 TKLLLLTVNGEYSG--LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY--ITQCPIKGGQSYTYEFTIV 103 (178)
Q Consensus 28 ~~~~~~~~Ng~~pg--p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~--~~~~~i~pg~~~~y~~~~~ 103 (178)
.+.+ |+|||+.++ +.|++++||+|+|+|.|.+.++|+|||||+.+.... .||... -.+..|.||++++|+|.+
T Consensus 484 ~~~~-wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~-~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 484 ERFA-WSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELED-GQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred ceeE-EEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeec-CCCcccccCCceeeCCCCEEEEEEEC-
Confidence 4666 999999877 589999999999999999999999999999887642 355321 123689999999999986
Q ss_pred ccCCceEEeechhhHhh-ccEEEEEEE
Q 035484 104 NQRGTLLWHAHHSWQRA-SVYGAFIIY 129 (178)
Q Consensus 104 ~~~Gt~~yH~h~~~~~~-Gl~G~liV~ 129 (178)
+++|+||||||...|.. ||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 89999999999999987 999999873
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.81 E-value=1.4e-19 Score=135.59 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=74.3
Q ss_pred EEEcCccCCceEEEecCCEEEEEEEeCCC---CCcceeecCccccCCCCCCCCCCccccccCCC----Ce--EEEEEEec
Q 035484 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVA---QNTTIRWHGIRQLRTGWSDGPAYITQCPIKGG----QS--YTYEFTIV 103 (178)
Q Consensus 33 ~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~---~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg----~~--~~y~~~~~ 103 (178)
+.++| .++|+|++++||+|++.++|.+. ....+|+||...+..+-+||++..+++++.|. +. .++.|+.
T Consensus 44 f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f- 121 (148)
T TIGR03095 44 FEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF- 121 (148)
T ss_pred EEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC-
Confidence 66777 78899999999999999999964 34566666665443334899999999988773 11 3445544
Q ss_pred ccCCceEEeechhhHhh-ccEEEEEEE
Q 035484 104 NQRGTLLWHAHHSWQRA-SVYGAFIIY 129 (178)
Q Consensus 104 ~~~Gt~~yH~h~~~~~~-Gl~G~liV~ 129 (178)
.++|+||||||..+|+. ||+|.|||+
T Consensus 122 ~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 122 STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 58999999999999997 999999985
No 21
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.52 E-value=1.4e-13 Score=100.87 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCCCCcCCceEEEEEEEE--EEEE-Ee--cCceeEEEE-EEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCcccc
Q 035484 1 MLPFSSSQTIKSFLFNVE--WKTV-SR--LCNTKLLLL-TVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQL 74 (178)
Q Consensus 1 ~~~~~~~~~~~~~~l~i~--~~~~-~~--~g~~~~~~~-~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~ 74 (178)
+|+..+.+..++|+++|+ ...+ ++ .|..... + ++|+++..+.|++++||+|+++|+|..+.+|..-+++..
T Consensus 15 ~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~-i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g-- 91 (135)
T TIGR03096 15 LLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKN-IRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYG-- 91 (135)
T ss_pred hhccchhhccceeEEEEeccccEeeEEEeCCEEEEE-EEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCC--
Confidence 356667888999999999 6666 43 4555554 6 999999999999999999999999999877654443321
Q ss_pred CCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHh
Q 035484 75 RTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR 119 (178)
Q Consensus 75 ~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~ 119 (178)
. +..|.||++.+++|++ +++|+|+|||......
T Consensus 92 -------i----s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 92 -------I----SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred -------c----ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 1 2368999999999986 9999999999876543
No 22
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.50 E-value=6.1e-14 Score=103.17 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=73.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCC---------------ccccccCCCCeEEEEEEeccc
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY---------------ITQCPIKGGQSYTYEFTIVNQ 105 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~---------------~~~~~i~pg~~~~y~~~~~~~ 105 (178)
.+.+.++.|+.+++.+.|....+|++|+||..+...+ .++... -....|.|++..+.+|.. +.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DN 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TS
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEe-ec
Confidence 3899999999999999999999999999999987543 222221 123468899999999987 79
Q ss_pred CCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 106 RGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 106 ~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
+|.|.||||...|.+ ||++.+.|.+.
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 999999999999987 99999999763
No 23
>PRK10965 multicopper oxidase; Provisional
Probab=99.17 E-value=7.8e-11 Score=104.41 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=71.2
Q ss_pred EEEcCcc-C--CceEEEecCCEEEEEEEeCCC-CCcceeecCccccCCCCCCCCCCc-------cccccCCCCeEEEEEE
Q 035484 33 LTVNGEY-S--GLAIAVYEGDNVQIKVTNRVA-QNTTIRWHGIRQLRTGWSDGPAYI-------TQCPIKGGQSYTYEFT 101 (178)
Q Consensus 33 ~~~Ng~~-p--gp~i~~~~Gd~v~v~~~N~~~-~~~~~H~HG~~~~~~~~~DG~~~~-------~~~~i~pg~~~~y~~~ 101 (178)
|+|||+. . -|.++++.|++.+++++|... ..|++|+||..|.... .+|.+-. ....|.| ++.++...
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEE-ecCCCCCccccccccEEEECC-cEEEEEEE
Confidence 5899984 3 367899999999999999985 7899999999988653 5665321 1124555 44444333
Q ss_pred ec---ccCCceEEeechhhHhh-ccEEEEEEE
Q 035484 102 IV---NQRGTLLWHAHHSWQRA-SVYGAFIIY 129 (178)
Q Consensus 102 ~~---~~~Gt~~yH~h~~~~~~-Gl~G~liV~ 129 (178)
.. +..|.|.||||...|.+ ||+|.+.|.
T Consensus 492 f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 492 FDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred ecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 32 45789999999999998 999999873
No 24
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.09 E-value=3.9e-10 Score=98.38 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=80.4
Q ss_pred eEEEEEEcCccCC---ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCC-CCC----C-ccccccCCCCeEEEE
Q 035484 29 KLLLLTVNGEYSG---LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSD-GPA----Y-ITQCPIKGGQSYTYE 99 (178)
Q Consensus 29 ~~~~~~~Ng~~pg---p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~D-G~~----~-~~~~~i~pg~~~~y~ 99 (178)
... |.+|+.... +++.++.|+.+++.++|.....|++|.||..+.... .+ ..+ . -....+.|+++..++
T Consensus 342 ~~~-~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~-~~~~~~~~~~~~kDTv~v~~~~~~~v~ 419 (451)
T COG2132 342 GYV-WAINGKAFDDNRVTLIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLS-GDAPAPGAAPGWKDTVLVAPGERLLVR 419 (451)
T ss_pred ccc-ccccCccCCCCcCceeecCCCEEEEEEECCCCCccCeEEcCceEEEEe-cCCCcccccCccceEEEeCCCeEEEEE
Confidence 355 999997554 688999999999999999999999999999987643 22 000 0 012368999999999
Q ss_pred EEecccCCceEEeechhhHhh-ccEEEEEEEc
Q 035484 100 FTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYP 130 (178)
Q Consensus 100 ~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~ 130 (178)
|+. +.+|.|.||||...|.. ||++.+.|..
T Consensus 420 ~~a-~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 420 FDA-DYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EeC-CCCCceEEeccchhHhhcCCeeEEEecC
Confidence 985 89999999999999997 9999998864
No 25
>PRK10883 FtsI repressor; Provisional
Probab=98.99 E-value=1.7e-09 Score=94.92 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=69.0
Q ss_pred EEEcCccCC---ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCcc-----cc--ccCCCCeEEEEEEe
Q 035484 33 LTVNGEYSG---LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYIT-----QC--PIKGGQSYTYEFTI 102 (178)
Q Consensus 33 ~~~Ng~~pg---p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~-----~~--~i~pg~~~~y~~~~ 102 (178)
|+|||+... +.++++.|++.++++.|. .+|++|+||..|.... .+|.+... .+ .| + ++.+..+..
T Consensus 363 ~~INg~~~~~~~~~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~-~~G~~~~~~~~gwkDTV~v-~-~~v~i~~~f 437 (471)
T PRK10883 363 PGINGALWDMNRIDVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRN-VNGAMPFPEDRGWKDTVWV-D-GQVELLVYF 437 (471)
T ss_pred CccCCcccCCCcceeecCCCCEEEEEEECC--CCcCEeECCccEEEEE-ecCCCCCccccCcCcEEEc-C-CeEEEEEEe
Confidence 689998533 246899999999999997 4899999999998653 56643210 11 33 3 456666655
Q ss_pred cccCC---ceEEeechhhHhh-ccEEEEEEEcC
Q 035484 103 VNQRG---TLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 103 ~~~~G---t~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
.+..| .|.||||...|.+ ||+|.+.|.++
T Consensus 438 ~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 438 GQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred cCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 33343 7999999999998 99999999763
No 26
>PLN02835 oxidoreductase
Probab=98.92 E-value=3.6e-09 Score=94.23 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=69.0
Q ss_pred EEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC-------C-------ccccccCCCCeEEEEEEecccCCce
Q 035484 44 IAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA-------Y-------ITQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 44 i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~-------~-------~~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
+.++.|+.|+|.+.|....+|++|.||..|...+..+|.- . -....+.++.....+|.+ +.+|.|
T Consensus 413 ~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~a-DNPG~W 491 (539)
T PLN02835 413 MQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSL-DNQGMW 491 (539)
T ss_pred EEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEEC-cCCEEe
Confidence 4556789999999999999999999999987654334311 0 012246788889999975 999999
Q ss_pred EEeechhhHhh-ccEEEEEEEcC
Q 035484 110 LWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 110 ~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
++|||...|.. ||...++|.+.
T Consensus 492 l~HCHi~~H~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 492 NMRSAIWERQYLGQQFYLRVWNQ 514 (539)
T ss_pred eeeecchhhhhcccEEEEEEccC
Confidence 99999988876 99999999976
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.79 E-value=2.5e-08 Score=88.96 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=68.8
Q ss_pred eEEEecCCEEEEEEEeCC---CCCcceeecCccccCCCCCCCCCC-------c--------cccccCCCCeEEEEEEecc
Q 035484 43 AIAVYEGDNVQIKVTNRV---AQNTTIRWHGIRQLRTGWSDGPAY-------I--------TQCPIKGGQSYTYEFTIVN 104 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~---~~~~~~H~HG~~~~~~~~~DG~~~-------~--------~~~~i~pg~~~~y~~~~~~ 104 (178)
+++++.|+.|+|.+.|.. +.+|+||+||..+...+...|.-. . ....++++.....+|.+ +
T Consensus 416 v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~a-d 494 (539)
T TIGR03389 416 VVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVA-D 494 (539)
T ss_pred EEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEec-C
Confidence 478889999999999985 448999999999875432223210 0 12347788889999986 9
Q ss_pred cCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 105 QRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 105 ~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
.+|.|++|||...|.. ||.-.|++.+.
T Consensus 495 NPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 522 (539)
T TIGR03389 495 NPGVWFMHCHLEVHTTWGLKMAFLVDNG 522 (539)
T ss_pred CCeEEEEEecccchhhhcceEEEEEccC
Confidence 9999999999999986 99988888765
No 28
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.77 E-value=4.7e-08 Score=68.31 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=56.4
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCc--cccccCCCCeEEEEEEecccCCceEEeechhhH
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYI--TQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~--~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~ 118 (178)
-..|+++.||+|+ |+|....+|.+..+....+... .+..+.. ....+.||+++++.|. .+|+|.|+|. .|
T Consensus 16 P~~i~v~~G~~V~--~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~--~H 87 (99)
T TIGR02656 16 PAKISIAAGDTVE--WVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE--PH 87 (99)
T ss_pred CCEEEECCCCEEE--EEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC--Cc
Confidence 4589999999965 5688888888887654322110 0111111 1235689999999884 3999999998 56
Q ss_pred hh-ccEEEEEEE
Q 035484 119 RA-SVYGAFIIY 129 (178)
Q Consensus 119 ~~-Gl~G~liV~ 129 (178)
.. ||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 64 999999985
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.73 E-value=5e-08 Score=87.08 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=65.9
Q ss_pred eEEEecCCEEEEEEEeCC------CCCcceeecCccccCCCCCCCC--------------C-CccccccCCCCeEEEEEE
Q 035484 43 AIAVYEGDNVQIKVTNRV------AQNTTIRWHGIRQLRTGWSDGP--------------A-YITQCPIKGGQSYTYEFT 101 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~------~~~~~~H~HG~~~~~~~~~DG~--------------~-~~~~~~i~pg~~~~y~~~ 101 (178)
+++++.|+.|+|.+.|.. ..+|++|+||..+...+...|. | .-...-|+|+.....+|.
T Consensus 417 ~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ 496 (541)
T TIGR03388 417 IYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFV 496 (541)
T ss_pred EEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEE
Confidence 378889999999999974 4689999999998754322221 1 001234778888899997
Q ss_pred ecccCCceEEeechhhHhh-ccEEEEEEEc
Q 035484 102 IVNQRGTLLWHAHHSWQRA-SVYGAFIIYP 130 (178)
Q Consensus 102 ~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~ 130 (178)
+ +.+|.|++|||...|.. ||.-.|+..+
T Consensus 497 a-dNPG~W~~HCHi~~H~~~GM~~~~~e~~ 525 (541)
T TIGR03388 497 A-DNPGVWAFHCHIEPHLHMGMGVVFAEGV 525 (541)
T ss_pred C-CCCeEeeeeccchhhhhcccEEEEeccc
Confidence 5 99999999999999987 8887776543
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.69 E-value=2.4e-07 Score=82.63 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=65.3
Q ss_pred eEEEecCCEEEEEEEeCC--------CCCcceeecCccccCCCCCCCCCC--------------cc-cccc---------
Q 035484 43 AIAVYEGDNVQIKVTNRV--------AQNTTIRWHGIRQLRTGWSDGPAY--------------IT-QCPI--------- 90 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~--------~~~~~~H~HG~~~~~~~~~DG~~~--------------~~-~~~i--------- 90 (178)
++.++.|+.|+|.+.|.. ..+|++|+||..+...+..+|.-. .. ..-+
T Consensus 413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~ 492 (538)
T TIGR03390 413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVP 492 (538)
T ss_pred EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccc
Confidence 467888999999999974 579999999988765433344210 00 0012
Q ss_pred -CCCCeEEEEEEecccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 91 -KGGQSYTYEFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 91 -~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
.|+.....+|.+ +.+|.|.+|||...|.. ||.-.++|.+.
T Consensus 493 ~~~~~~~~ir~~~-dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 493 GAPAGWRAWRIRV-TNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred cCCCceEEEEEEc-CCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 366777889976 89999999999999886 99988887654
No 31
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.67 E-value=1.2e-07 Score=79.16 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=80.3
Q ss_pred EEEEEEcCcc--CCceEEEecCCEEEEEEEeCCC-CCcceeecCccccCCCCCCCCCC------ccccccCCCCeEEEEE
Q 035484 30 LLLLTVNGEY--SGLAIAVYEGDNVQIKVTNRVA-QNTTIRWHGIRQLRTGWSDGPAY------ITQCPIKGGQSYTYEF 100 (178)
Q Consensus 30 ~~~~~~Ng~~--pgp~i~~~~Gd~v~v~~~N~~~-~~~~~H~HG~~~~~~~~~DG~~~------~~~~~i~pg~~~~y~~ 100 (178)
.. +++||+. ..|.+.++.|+++++++.|... ....+|++|..+.... .||.+- .....|.||+++...+
T Consensus 189 ~~-~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~-~DG~~~~~~~~~~~~~~i~PG~R~dv~v 266 (311)
T TIGR02376 189 TH-VVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW-VTGKFANPPNRDVETWFIPGGSAAAALY 266 (311)
T ss_pred CE-EEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE-ECCcccCCCCCCcceEEECCCceEEEEE
Confidence 45 8999984 2367899999999999999986 5688999998875432 688532 2345799999999999
Q ss_pred EecccCCceEEeechhhHh--hccEEEEEEEcC-CCCCC
Q 035484 101 TIVNQRGTLLWHAHHSWQR--ASVYGAFIIYPR-MPYPF 136 (178)
Q Consensus 101 ~~~~~~Gt~~yH~h~~~~~--~Gl~G~liV~~~-~~~~~ 136 (178)
+. +++|.|+.|||...+. .|+.|.+-++.. ++..+
T Consensus 267 ~~-~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~~~~~~ 304 (311)
T TIGR02376 267 TF-EQPGVYAYVDHNLIEAFEKGAAAQVKVEGAWNPDLM 304 (311)
T ss_pred Ee-CCCeEEEEECcHHHHHHhCCCEEEEEECCCCChhHh
Confidence 87 5799999999987654 389988888765 43333
No 32
>PLN02604 oxidoreductase
Probab=98.66 E-value=8.3e-08 Score=86.09 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=65.9
Q ss_pred EEEecCCEEEEEEEeCC------CCCcceeecCccccCCCCCCCC--------------C-CccccccCCCCeEEEEEEe
Q 035484 44 IAVYEGDNVQIKVTNRV------AQNTTIRWHGIRQLRTGWSDGP--------------A-YITQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 44 i~~~~Gd~v~v~~~N~~------~~~~~~H~HG~~~~~~~~~DG~--------------~-~~~~~~i~pg~~~~y~~~~ 102 (178)
+.++.|+.|+|.+.|.. ..+|+||.||..+...+...|. | .-....|+|+.....+|.+
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~a 520 (566)
T PLN02604 441 YRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRA 520 (566)
T ss_pred EEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEEC
Confidence 78889999999999985 4579999999998754322221 0 0012247788888999986
Q ss_pred cccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 103 VNQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 103 ~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
+.+|.|.+|||...|.. ||.-.++..++
T Consensus 521 -DNPG~WlfHCHI~~Hl~~GM~~v~~e~~~ 549 (566)
T PLN02604 521 -DNPGVWAFHCHIESHFFMGMGVVFEEGIE 549 (566)
T ss_pred -CCCeEeeEeecchhHhhcCCEEEEeeChh
Confidence 99999999999999886 98877755443
No 33
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=98.58 E-value=2e-06 Score=65.73 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.3
Q ss_pred EEEcCccCC-ceEEEecCCEEEEEEEeCCCCCcceeecCccccCC----CCCCCC----CCcc-----ccccCCCCeEEE
Q 035484 33 LTVNGEYSG-LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRT----GWSDGP----AYIT-----QCPIKGGQSYTY 98 (178)
Q Consensus 33 ~~~Ng~~pg-p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~----~~~DG~----~~~~-----~~~i~pg~~~~y 98 (178)
+-+||...| ++|.+..|-+|.|+|+|....+|.+-+-=...+.. .-.||. +|.+ ...+.+|++..-
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 788999888 99999999999999999998888776621111100 013552 1221 124668888666
Q ss_pred EEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCC
Q 035484 99 EFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPF 136 (178)
Q Consensus 99 ~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~ 136 (178)
.|. +-++|+|||-|-..+|.. ||++-+||...-..||
T Consensus 155 ~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt~PY 192 (195)
T TIGR03094 155 WWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVTTPY 192 (195)
T ss_pred Eec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcccce
Confidence 665 479999999999999987 9999999998744333
No 34
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.57 E-value=3.9e-07 Score=63.60 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=54.6
Q ss_pred CCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCC-CCCCccccccCCCCeEEEEEEecccCCceEEeechhhH
Q 035484 40 SGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSD-GPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118 (178)
Q Consensus 40 pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~D-G~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~ 118 (178)
--..|.++.||+|+ |.|....+|.+.+=--..+.....+ ..+......+.||+++++.|+ .+|+|.|+|. . |
T Consensus 15 ~P~~i~V~~G~tV~--~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-P-H 87 (99)
T PF00127_consen 15 DPSEITVKAGDTVT--FVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-P-H 87 (99)
T ss_dssp ESSEEEEETTEEEE--EEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-T-T
T ss_pred eCCEEEECCCCEEE--EEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-C-C
Confidence 34699999999865 5666777777766331110000000 001002235789999999985 7999999999 4 7
Q ss_pred hh-ccEEEEEEE
Q 035484 119 RA-SVYGAFIIY 129 (178)
Q Consensus 119 ~~-Gl~G~liV~ 129 (178)
+. ||.|.|+|+
T Consensus 88 ~~~GM~G~i~V~ 99 (99)
T PF00127_consen 88 YEAGMVGTIIVE 99 (99)
T ss_dssp GGTTSEEEEEEE
T ss_pred cccCCEEEEEEC
Confidence 65 999999996
No 35
>PLN02792 oxidoreductase
Probab=98.55 E-value=3.1e-07 Score=81.81 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=69.2
Q ss_pred eEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC-------Cc-------cccccCCCCeEEEEEEecccCCc
Q 035484 43 AIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA-------YI-------TQCPIKGGQSYTYEFTIVNQRGT 108 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~-------~~-------~~~~i~pg~~~~y~~~~~~~~Gt 108 (178)
++.++.|+.|+|.+.|.....|++|.||..|...+..+|.- .. ....+.++.-...+|.+ +.+|.
T Consensus 404 v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~a-DNPGv 482 (536)
T PLN02792 404 VMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVAL-DNVGM 482 (536)
T ss_pred EEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEe-eCCEE
Confidence 46788899999999998888999999999987543333321 00 12246678888889976 99999
Q ss_pred eEEeechhhHhh-ccEEEEEEEcC
Q 035484 109 LLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 109 ~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
|++|||...|.. ||.-.|+|.+.
T Consensus 483 W~~HCh~~~h~~~Gm~~~~~v~~~ 506 (536)
T PLN02792 483 WNLRSQFWARQYLGQQFYLRVYSP 506 (536)
T ss_pred EeeeEcchhccccceEEEEEEccC
Confidence 999999988876 99999999866
No 36
>PLN02354 copper ion binding / oxidoreductase
Probab=98.55 E-value=2.4e-07 Score=82.79 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=65.6
Q ss_pred eEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC-------Cc-------cccccCCCCeEEEEEEecccCCc
Q 035484 43 AIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA-------YI-------TQCPIKGGQSYTYEFTIVNQRGT 108 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~-------~~-------~~~~i~pg~~~~y~~~~~~~~Gt 108 (178)
+++++.|+.|+|.+.|....+|++|.||..|...+..+|.- .. ....|+++.....+|.+ +.+|.
T Consensus 419 v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~a-DNPGv 497 (552)
T PLN02354 419 VLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTF-DNAGM 497 (552)
T ss_pred eEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEe-cCCeE
Confidence 45667789999999999889999999999987543333311 00 11246778888889986 89999
Q ss_pred eEEeechhhHhh-ccEEEEEEEcC
Q 035484 109 LLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 109 ~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
|++|||...|.. ||--.++|.++
T Consensus 498 W~~HCHi~~H~~~g~~l~~~v~~~ 521 (552)
T PLN02354 498 WNIRSENWERRYLGQQLYASVLSP 521 (552)
T ss_pred EeeeccccccccccceEEEEEeCC
Confidence 999999966654 77666666654
No 37
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=98.55 E-value=2.3e-06 Score=66.36 Aligned_cols=103 Identities=23% Similarity=0.230 Sum_probs=75.6
Q ss_pred EEEcCccCC-ceEEEecCCEEEEEEEeCCCCCcceeecCcc--ccC--CCCCCCCC----C-c----cccccCCCCeEEE
Q 035484 33 LTVNGEYSG-LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIR--QLR--TGWSDGPA----Y-I----TQCPIKGGQSYTY 98 (178)
Q Consensus 33 ~~~Ng~~pg-p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~--~~~--~~~~DG~~----~-~----~~~~i~pg~~~~y 98 (178)
+-|||..-| ++|.+..|-+|.|+|+|....+|.+-.---. .+. .-..||.. + . +...|.+|++..-
T Consensus 76 ~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~ 155 (196)
T PF06525_consen 76 FNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASG 155 (196)
T ss_pred eeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeE
Confidence 899998888 8999999999999999998877766543111 111 11145521 1 1 1236788999987
Q ss_pred EEEecccCCceEEeechhhHhh-ccEEEEEEEcCCCCCC
Q 035484 99 EFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPRMPYPF 136 (178)
Q Consensus 99 ~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~ 136 (178)
.|. +-++|+||+-|-..+|+. ||++-|+|...-..||
T Consensus 156 ~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~Py 193 (196)
T PF06525_consen 156 VYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSNVTVPY 193 (196)
T ss_pred EEc-cCCCceEEEEccCCChhhcCCEEEEEEecCcccce
Confidence 774 368999999999999997 9999999998844333
No 38
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.50 E-value=8.6e-07 Score=59.93 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHh
Q 035484 40 SGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR 119 (178)
Q Consensus 40 pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~ 119 (178)
--+.|+++.||+|. ++|....+|+++........ .+- ....+.+|+++++.| +++|+|-|||-.+.
T Consensus 9 ~P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~---~~~----~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp-- 74 (83)
T TIGR02657 9 ETPELHVKVGDTVT--WINREAMPHNVHFVAGVLGE---AAL----KGPMMKKEQAYSLTF---TEAGTYDYHCTPHP-- 74 (83)
T ss_pred cCCEEEECCCCEEE--EEECCCCCccEEecCCCCcc---ccc----cccccCCCCEEEEEC---CCCEEEEEEcCCCC--
Confidence 34689999999975 57888888888875432111 110 011357788888776 57999999998755
Q ss_pred hccEEEEEEE
Q 035484 120 ASVYGAFIIY 129 (178)
Q Consensus 120 ~Gl~G~liV~ 129 (178)
.|.|-++|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 599999885
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.50 E-value=2.5e-07 Score=65.04 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=48.4
Q ss_pred CccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechh
Q 035484 37 GEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHS 116 (178)
Q Consensus 37 g~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~ 116 (178)
+++--..|+++.|++++++++|....+|.+...++... ..+.||++.++.|+. .++|+|-|+|...
T Consensus 30 ~~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~ 95 (104)
T PF13473_consen 30 FGFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMH 95 (104)
T ss_dssp EEEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS
T ss_pred CeEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCC
Confidence 34444599999999999999999998877776664321 378999999999974 8999999999965
Q ss_pred hHhhccEEEEEE
Q 035484 117 WQRASVYGAFII 128 (178)
Q Consensus 117 ~~~~Gl~G~liV 128 (178)
.. |.|-|+|
T Consensus 96 ~~---m~G~liV 104 (104)
T PF13473_consen 96 PN---MKGTLIV 104 (104)
T ss_dssp -T---TB-----
T ss_pred Cc---ceecccC
Confidence 52 6666654
No 40
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=9.8e-07 Score=79.10 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=68.0
Q ss_pred EEecCceeEEE-EEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEE
Q 035484 22 VSRLCNTKLLL-LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEF 100 (178)
Q Consensus 22 ~~~~g~~~~~~-~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~ 100 (178)
+..+|....+- .++.-.|--+.|++++||+|.++++|.....-.+ ||...+.. ++ ..-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 55677443331 5555566567899999999999999975432222 33332211 11 12567999999999
Q ss_pred EecccCCceEEeechh-hHhh-ccEEEEEEEcC
Q 035484 101 TIVNQRGTLLWHAHHS-WQRA-SVYGAFIIYPR 131 (178)
Q Consensus 101 ~~~~~~Gt~~yH~h~~-~~~~-Gl~G~liV~~~ 131 (178)
++ +++|.|||||..- +... .|.|-++|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 86 8999999999863 3333 99999999975
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.46 E-value=1e-06 Score=63.60 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=54.3
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHhh
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA 120 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~ 120 (178)
-+.|.++.||+|+ |+|....+|.+.+.+.... . .+...+.||+++++.|+ .+|+|.|+|- .|..
T Consensus 46 P~~i~v~~Gd~V~--~~N~~~~~H~v~~~~~~~~--------~-~~~~~~~pg~t~~~tF~---~~G~y~y~C~--~H~~ 109 (119)
T PRK02710 46 PSTLTIKAGDTVK--WVNNKLAPHNAVFDGAKEL--------S-HKDLAFAPGESWEETFS---EAGTYTYYCE--PHRG 109 (119)
T ss_pred CCEEEEcCCCEEE--EEECCCCCceEEecCCccc--------c-ccccccCCCCEEEEEec---CCEEEEEEcC--CCcc
Confidence 4689999999854 5788888888876543210 0 01124789999999985 3899999998 5654
Q ss_pred -ccEEEEEEE
Q 035484 121 -SVYGAFIIY 129 (178)
Q Consensus 121 -Gl~G~liV~ 129 (178)
||.|.++|+
T Consensus 110 ~gM~G~I~V~ 119 (119)
T PRK02710 110 AGMVGKITVE 119 (119)
T ss_pred CCcEEEEEEC
Confidence 999999984
No 42
>PLN02191 L-ascorbate oxidase
Probab=98.45 E-value=7.5e-07 Score=80.08 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred eEEEecCCEEEEEEEeCC------CCCcceeecCccccCCCCCCCCC---------------CccccccCCCCeEEEEEE
Q 035484 43 AIAVYEGDNVQIKVTNRV------AQNTTIRWHGIRQLRTGWSDGPA---------------YITQCPIKGGQSYTYEFT 101 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~------~~~~~~H~HG~~~~~~~~~DG~~---------------~~~~~~i~pg~~~~y~~~ 101 (178)
++.++.|+.|+|.+.|.. ..+|++|.||..+...+...|.- .-....++|+.....+|.
T Consensus 440 v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~ 519 (574)
T PLN02191 440 IYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFV 519 (574)
T ss_pred eEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEE
Confidence 356667999999999985 67999999999986543233321 001224678888899998
Q ss_pred ecccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 102 IVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 102 ~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
+ +.+|.|.+|||...|.. ||.-.| ++..
T Consensus 520 a-DNPG~Wl~HCHi~~Hl~~Gm~~~~-~e~~ 548 (574)
T PLN02191 520 T-DNPGVWFFHCHIEPHLHMGMGVVF-AEGL 548 (574)
T ss_pred C-CCCEEEEEecCchhhhhcCCEEEE-ecCh
Confidence 6 99999999999999987 776555 4443
No 43
>PLN02168 copper ion binding / pectinesterase
Probab=98.45 E-value=7.6e-07 Score=79.51 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=63.8
Q ss_pred EEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC-------Cc-------cccccCCCCeEEEEEEecccCCce
Q 035484 44 IAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA-------YI-------TQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 44 i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~-------~~-------~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
++++.|+.|+|.+.|....+|++|+||..|...+...|.- .. ....++++.....+|.+ +.+|.|
T Consensus 417 ~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~a-DNPG~W 495 (545)
T PLN02168 417 VDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAM-DNQGMW 495 (545)
T ss_pred EEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEc-cCCeEE
Confidence 6788899999999999989999999999986542222210 00 11246788888999986 999999
Q ss_pred EEeechhhHhh-ccEEEEEEE
Q 035484 110 LWHAHHSWQRA-SVYGAFIIY 129 (178)
Q Consensus 110 ~yH~h~~~~~~-Gl~G~liV~ 129 (178)
++|||...+-. ||--.++|.
T Consensus 496 l~HCHi~~~~h~g~gl~~~v~ 516 (545)
T PLN02168 496 NVRSQKAEQWYLGQELYMRVK 516 (545)
T ss_pred eeeecCcccceecCcEEEEEE
Confidence 99999865554 666667775
No 44
>PLN02991 oxidoreductase
Probab=98.39 E-value=1e-06 Score=78.68 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=65.0
Q ss_pred EEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC-------Cc-------cccccCCCCeEEEEEEecccCCce
Q 035484 44 IAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA-------YI-------TQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 44 i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~-------~~-------~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
+.++.|+.|+|.+.|....+|++|+||..|...+...|.- .. ....|+++.....+|.+ +.+|.|
T Consensus 412 ~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~a-DNPG~W 490 (543)
T PLN02991 412 MQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSL-DNVGMW 490 (543)
T ss_pred EEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEEC-CCCEEe
Confidence 5668899999999999889999999999986543222210 00 12246778888999975 999999
Q ss_pred EEeechhhHhh-ccEEEEEEEcC
Q 035484 110 LWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 110 ~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
++|||...|.. ||.-.++|.+.
T Consensus 491 ~~HCHi~~h~~~gm~~~~~v~~~ 513 (543)
T PLN02991 491 NLRSELWERQYLGQQFYMRVYTT 513 (543)
T ss_pred eeeeCccccccccEEEEEEecCC
Confidence 99999965544 88777777755
No 45
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.35 E-value=1.2e-06 Score=78.81 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=67.0
Q ss_pred eEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCC--------------ccccccCCCCeEEEEEEecccCCc
Q 035484 43 AIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY--------------ITQCPIKGGQSYTYEFTIVNQRGT 108 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~--------------~~~~~i~pg~~~~y~~~~~~~~Gt 108 (178)
++.++.++.|+|.+.|....+|++|.||..|-..+...|.-. -....+.+|.-...+|.+ +.+|.
T Consensus 434 v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~a-DNPG~ 512 (596)
T PLN00044 434 IINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFL-DNAGI 512 (596)
T ss_pred EEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEec-CCCEE
Confidence 456777999999999988889999999999875433333210 012246788888889976 99999
Q ss_pred eEEeechhhHhh-ccEEEEEEEcC
Q 035484 109 LLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 109 ~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
|++|||...+.. ||--.++|.+.
T Consensus 513 W~lHCH~~~h~~~Gm~~~~~v~~~ 536 (596)
T PLN00044 513 WNLRVENLDAWYLGQEVYINVVNP 536 (596)
T ss_pred ehhhccCchhhcccCcEEEEEecC
Confidence 999999766654 88888888865
No 46
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.11 E-value=1.7e-05 Score=57.05 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=49.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceee-cCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHh
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRW-HGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR 119 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~-HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~ 119 (178)
-..|.++.||+|++...|. +|+... .+.. .+|... ....+|+++++.| +++|+|-|+|- .|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~--pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCT--PHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcC--CCc
Confidence 4589999999988877664 455443 1111 122211 1224577766666 57999999999 566
Q ss_pred h-ccEEEEEEEcC
Q 035484 120 A-SVYGAFIIYPR 131 (178)
Q Consensus 120 ~-Gl~G~liV~~~ 131 (178)
. ||.|.++|.++
T Consensus 77 ~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 77 GMGMVALIQVGDP 89 (116)
T ss_pred cCCCEEEEEECCC
Confidence 5 99999999885
No 47
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=3e-05 Score=69.43 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=69.0
Q ss_pred eEEEecCCEEEEEEEeCCC---CCcceeecCccccCCCCCCCCCCc----------------cccccCCCCeEEEEEEec
Q 035484 43 AIAVYEGDNVQIKVTNRVA---QNTTIRWHGIRQLRTGWSDGPAYI----------------TQCPIKGGQSYTYEFTIV 103 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~---~~~~~H~HG~~~~~~~~~DG~~~~----------------~~~~i~pg~~~~y~~~~~ 103 (178)
.++++-++.|+|.+.|... +.|++|.||..+...+.-+|.-.. ...-|+||.-...+|.+
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a- 509 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA- 509 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc-
Confidence 3688999999999999985 567779999998754322332111 12247899999999965
Q ss_pred ccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 104 NQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 104 ~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
+.+|.|.+|||...|.. ||.-.++|.+.
T Consensus 510 dNPG~W~~HCHie~H~~~G~~~~f~V~~~ 538 (563)
T KOG1263|consen 510 DNPGVWLMHCHIEDHLYLGMETVFIVGNG 538 (563)
T ss_pred CCCcEEEEEEecHHHHhccCeEEEEEeCC
Confidence 99999999999988875 99999999987
No 48
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.96 E-value=6.2e-05 Score=54.92 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=52.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHhh-
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRA- 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~- 120 (178)
-.++++.||+ |+|+|.....|+++.-+..- .+|.. .....++++++..| +.+|+|-|+|-. |..
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~-----~~g~~---~~~~~~~~s~~~Tf---e~~G~Y~Y~C~P--H~~~ 118 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD-----PEGSG---TLKAGINESFTHTF---ETPGEYTYYCTP--HPGM 118 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC-----ccccc---ccccCCCcceEEEe---cccceEEEEecc--CCCC
Confidence 3899999999 55678888888887655431 12221 12344568888777 469999999974 554
Q ss_pred ccEEEEEEEc
Q 035484 121 SVYGAFIIYP 130 (178)
Q Consensus 121 Gl~G~liV~~ 130 (178)
||-|.++|++
T Consensus 119 gM~G~IvV~~ 128 (128)
T COG3794 119 GMKGKIVVGE 128 (128)
T ss_pred CcEEEEEeCC
Confidence 9999999975
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.87 E-value=9.1e-05 Score=55.85 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=63.7
Q ss_pred EEEcCc------------cCCceEEEecCCEEEEEEEeCCCC-CcceeecCccccCCCCCCCCCCc----cccccCCCCe
Q 035484 33 LTVNGE------------YSGLAIAVYEGDNVQIKVTNRVAQ-NTTIRWHGIRQLRTGWSDGPAYI----TQCPIKGGQS 95 (178)
Q Consensus 33 ~~~Ng~------------~pgp~i~~~~Gd~v~v~~~N~~~~-~~~~H~HG~~~~~~~~~DG~~~~----~~~~i~pg~~ 95 (178)
+.|||+ -.-|+|.++.|++++++|.|.... ...+++.|..+.... .||.+-. ....|.||++
T Consensus 39 ~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via-~DG~~v~p~~~~~l~l~~G~R 117 (159)
T PF00394_consen 39 ILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIA-ADGVPVEPYKVDTLVLAPGQR 117 (159)
T ss_dssp EEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEE-ETTEEEEEEEESBEEE-TTEE
T ss_pred EEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEee-eccccccccccceEEeeCCeE
Confidence 789994 124899999999999999999875 678899998776553 7986432 2346899999
Q ss_pred EEEEEEecccCCceEEeec
Q 035484 96 YTYEFTIVNQRGTLLWHAH 114 (178)
Q Consensus 96 ~~y~~~~~~~~Gt~~yH~h 114 (178)
++.-+++.+.+|.||.++.
T Consensus 118 ~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 118 YDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp EEEEEEECSCSSEEEEEEE
T ss_pred EEEEEEeCCCCCeEEEEEe
Confidence 9999988445999999994
No 50
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.77 E-value=0.0002 Score=51.47 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=49.3
Q ss_pred CceEEEecCCEEEEEEEeC-CCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHh
Q 035484 41 GLAIAVYEGDNVQIKVTNR-VAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR 119 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~-~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~ 119 (178)
-..|.++.||+|+ ++|+ ...+|++..-+- ..|..+ .....+|+++++.| +++|+|-|+|- .|.
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~~----~~f~s~-----~~~~~~G~t~s~Tf---~~~G~Y~Y~C~--pH~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDGD----GDLDES-----ERVSEEGTTYEHTF---EEPGIYLYVCV--PHE 104 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECCC----CCcccc-----ccccCCCCEEEEEe---cCCcEEEEEcc--CCC
Confidence 4589999999976 5543 346666654210 011101 11357899999988 57999999998 455
Q ss_pred h-ccEEEEEEE
Q 035484 120 A-SVYGAFIIY 129 (178)
Q Consensus 120 ~-Gl~G~liV~ 129 (178)
. ||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 4 999999984
No 51
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=96.80 E-value=0.012 Score=42.69 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=57.5
Q ss_pred CCceEEEec-CCEEEEEEEeCCCCCcceeecCccccCCCC-----CCC---------CCCc------cccccCCCCeEEE
Q 035484 40 SGLAIAVYE-GDNVQIKVTNRVAQNTTIRWHGIRQLRTGW-----SDG---------PAYI------TQCPIKGGQSYTY 98 (178)
Q Consensus 40 pgp~i~~~~-Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~-----~DG---------~~~~------~~~~i~pg~~~~y 98 (178)
--..|.++. +.+|.|+|.|....|...=-|..-...... .|| +|.. ....|.+||+.+.
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 345888887 589999999997655322222211110000 011 2211 1235889999999
Q ss_pred EEEecc-cCCc-eEEeechhhHhhccEEEEEE
Q 035484 99 EFTIVN-QRGT-LLWHAHHSWQRASVYGAFII 128 (178)
Q Consensus 99 ~~~~~~-~~Gt-~~yH~h~~~~~~Gl~G~liV 128 (178)
.|+++. ++|. |.|-|.+.+|.+.|.|.+.+
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~l 125 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWAMMRGTVKL 125 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHHhceEEEeC
Confidence 998742 6785 99999999999989998753
No 52
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=96.76 E-value=0.015 Score=41.95 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=51.0
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHh
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQR 119 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~ 119 (178)
.+.|.++.|++|++.+++. +.-|++...++.. +.-+-||+.....|++ +++|+|+..|.- ++..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 4789999999999999993 4455555444332 1246789999999986 899999999984 3333
Q ss_pred h-ccEEEEEE
Q 035484 120 A-SVYGAFII 128 (178)
Q Consensus 120 ~-Gl~G~liV 128 (178)
. -|.+-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 3 67776665
No 53
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.022 Score=42.78 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=62.8
Q ss_pred cCCceEEEecCCEEEEEEEeCCCCCccee----------e-cCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCC
Q 035484 39 YSGLAIAVYEGDNVQIKVTNRVAQNTTIR----------W-HGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRG 107 (178)
Q Consensus 39 ~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H----------~-HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~G 107 (178)
|++-.+.++.|++++..+.|...--|-+- | |..... .+++- ......+.||++-+..+.. .++|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCCc
Confidence 56778999999999999999864322111 1 222211 13221 1123468999999999986 7899
Q ss_pred ceEEeechhhHhh-ccEEEEEEEc
Q 035484 108 TLLWHAHHSWQRA-SVYGAFIIYP 130 (178)
Q Consensus 108 t~~yH~h~~~~~~-Gl~G~liV~~ 130 (178)
.|-+-|...+|+. ||.|-+.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999997 9999999864
No 54
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=95.17 E-value=0.45 Score=37.19 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=53.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..|.+..|+.|++.+++.. .-|++..-++. + +.-+-||..-+..|++ +++|+|...|.. ++...
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf~ip~~~---------~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSFWVPELG---------G----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhcccccccC---------c----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999853 22333222221 1 1245679888888975 899999999985 33333
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
.|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 79999998875
No 55
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=93.67 E-value=0.48 Score=41.69 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=55.4
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhHh--
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQR-- 119 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~-- 119 (178)
-++.+++||+|.+.++|.....-.+|---+.+ -|+ ...+.|.++-.|.|.. +.+|.+||.|-..-+.
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~thgfv~p~------~~v----~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTHGFVIPN------YGV----NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccceeeecc------Cce----EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 68899999999999999887776665322221 111 1257788888999964 8999999998754443
Q ss_pred hccEEEEEEEc
Q 035484 120 ASVYGAFIIYP 130 (178)
Q Consensus 120 ~Gl~G~liV~~ 130 (178)
.-|.|-++||+
T Consensus 627 ~em~~rmlve~ 637 (637)
T COG4263 627 MEMAGRMLVEA 637 (637)
T ss_pred HhhccceeecC
Confidence 26777777763
No 56
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=93.52 E-value=0.44 Score=40.95 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=56.4
Q ss_pred EEEcC-ccCCceEEEecCCEEEEEEEeCCCCCcceeec-CccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceE
Q 035484 33 LTVNG-EYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWH-GIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLL 110 (178)
Q Consensus 33 ~~~Ng-~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~H-G~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~ 110 (178)
.++++ .+--..+.++.|+ +++.++|....++.+-.- |... -| ..-.|.||.+..+.+++ .+|+|-
T Consensus 34 Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~v------v~----e~EnIaPG~s~~l~~~L--~pGtY~ 100 (375)
T PRK10378 34 VTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKALEWEILKGVMV------VE----ERENIAPGFSQKMTANL--QPGEYD 100 (375)
T ss_pred EEEECCccccCceeeCCCC-EEEEEEeCCCCcceEEeeccccc------cc----cccccCCCCceEEEEec--CCceEE
Confidence 45544 4445689999996 999999998877554321 1100 00 11378999998887765 699999
Q ss_pred EeechhhHhhccEEEEEEEcC
Q 035484 111 WHAHHSWQRASVYGAFIIYPR 131 (178)
Q Consensus 111 yH~h~~~~~~Gl~G~liV~~~ 131 (178)
|+|-. + ..+.|.++|...
T Consensus 101 ~~C~~--~-~~~~g~l~Vtg~ 118 (375)
T PRK10378 101 MTCGL--L-TNPKGKLIVKGE 118 (375)
T ss_pred eecCc--C-CCCCceEEEeCC
Confidence 99933 2 345889999865
No 57
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=93.28 E-value=0.61 Score=37.87 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=57.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHh
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQR 119 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~ 119 (178)
...|.+..|++|++.++-. +.-|++...++... . -+-||......+++ +++|+|.-+|+- ++..
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~k----~---------d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~g 200 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGGK----I---------DAIPGMTTELWLTA-NKPGTYRGICAEYCGPG 200 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCce----e---------eecCCceEEEEEec-CCCeEEEEEcHhhcCCC
Confidence 3899999999999998766 55555555544432 2 34568888888875 899999999994 4444
Q ss_pred h-ccEEEEEEEcC
Q 035484 120 A-SVYGAFIIYPR 131 (178)
Q Consensus 120 ~-Gl~G~liV~~~ 131 (178)
. .|.+.++|.++
T Consensus 201 H~~M~~~v~vvs~ 213 (247)
T COG1622 201 HSFMRFKVIVVSQ 213 (247)
T ss_pred cccceEEEEEEcH
Confidence 4 89999999987
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.67 E-value=1.3 Score=29.65 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=30.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCC---ccccccCCCCeEEEEEEeccc---CCceE
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAY---ITQCPIKGGQSYTYEFTIVNQ---RGTLL 110 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~---~~~~~i~pg~~~~y~~~~~~~---~Gt~~ 110 (178)
-+|....|++..+.+.|.... .. -.|++|..- +....|.||++.+|++..+.. +|+|.
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~---------~v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGK---------EV--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp EEEEESSS--EEEEEE-TT-----------EE--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCC---------EE--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 356666677777766655221 11 135777532 234479999999999988533 57774
No 59
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=77.09 E-value=12 Score=25.94 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=43.4
Q ss_pred EEEEEeCCCCCcceeecCccccCCCCCC-CCCCccccccCCCCeEEEEEEecccCCceEEeechhhHhhccEEEEEEEcC
Q 035484 53 QIKVTNRVAQNTTIRWHGIRQLRTGWSD-GPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQRASVYGAFIIYPR 131 (178)
Q Consensus 53 ~v~~~N~~~~~~~~H~HG~~~~~~~~~D-G~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~~~Gl~G~liV~~~ 131 (178)
.|+++|.|.....+..|=.... .| |. ..+.||+++..+|.. +-.|+-.|.|+.......-..-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4789999966666665544321 22 22 368999999999964 4567888899976511123445555433
No 60
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.91 E-value=18 Score=28.89 Aligned_cols=76 Identities=8% Similarity=-0.045 Sum_probs=50.4
Q ss_pred CceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHh
Q 035484 41 GLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQR 119 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~ 119 (178)
...+.+..|..|++.+++.. .-|+...-++... . -+-||..-...|.+ +++|+|+-.|.- ++..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViHsf~ip~~~~k----~---------d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIHSWTVPSLGVK----V---------DAIPGRLNQLSFEP-KRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-cccceeccccCce----e---------ECCCCcceeEEEEe-CCCEEEEEECccccCcC
Confidence 35799999999999999843 3333333222211 2 34568888888875 899999998884 3333
Q ss_pred h-ccEEEEEEEcC
Q 035484 120 A-SVYGAFIIYPR 131 (178)
Q Consensus 120 ~-Gl~G~liV~~~ 131 (178)
. .|.+.++|.++
T Consensus 204 H~~M~~~v~v~~~ 216 (228)
T MTH00140 204 HSFMPIVVEAVPL 216 (228)
T ss_pred cCCCeEEEEEECH
Confidence 3 67777777654
No 61
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=73.98 E-value=23 Score=23.57 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=38.4
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEe
Q 035484 41 GLAIAVY---EGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 41 gp~i~~~---~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~ 102 (178)
.|.+.++ ....|.+++.|....+..+....... ..+.+ .+..|.||++.+..|.+
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEee
Confidence 4555554 23589999999999888888765322 11111 35579999999999976
No 62
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=72.73 E-value=7.3 Score=25.30 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=24.1
Q ss_pred EEEEEEeCCCCCcc-eeecCccccCCCCCCCCCCccccccCCCCeEEEEEEec----ccCCceE
Q 035484 52 VQIKVTNRVAQNTT-IRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIV----NQRGTLL 110 (178)
Q Consensus 52 v~v~~~N~~~~~~~-~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~----~~~Gt~~ 110 (178)
+.++|+|....+.. +... +.. ..+|...........|+||++.+..|.+. -.+|+|.
T Consensus 9 ~~~tv~N~g~~~~~~v~~~-l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 9 VTLTVTNTGTAPLTNVSLS-LSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp EEEEEE--SSS-BSS-EEE-EE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred EEEEEEECCCCceeeEEEE-EeC-CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 45667888755421 1111 111 23555221111223689999999999883 2356653
No 63
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=71.37 E-value=34 Score=26.70 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=49.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
-.+++..|..+++.++-.. .-|++...++... +| +-||..-...|.+ +++|+|.-.|.- ++...
T Consensus 116 ~~l~lp~g~~v~~~ltS~D-ViHsf~vp~l~~k----~d---------~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H 180 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD-VIHSFSVPDLNLK----MD---------AIPGRINHLFFCP-DRHGVFVGYCSELCGVGH 180 (194)
T ss_pred ceEEEeCCCEEEeeeecCc-cccceeccccCce----ee---------cCCCceEEEEEEc-CCCEEEEEEeehhhCcCc
Confidence 3588899999999876542 3344333332211 23 3478888888875 899999999984 34333
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
.|.+.+.|.++
T Consensus 181 ~~M~~~v~v~~~ 192 (194)
T MTH00047 181 SYMPIVIEVVDV 192 (194)
T ss_pred ccCcEEEEEEcC
Confidence 78888887765
No 64
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=70.62 E-value=4.1 Score=34.93 Aligned_cols=43 Identities=19% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCCCCCCccccccCCCCeEEEEEEe-cccCCceEEeechhhHhh
Q 035484 78 WSDGPAYITQCPIKGGQSYTYEFTI-VNQRGTLLWHAHHSWQRA 120 (178)
Q Consensus 78 ~~DG~~~~~~~~i~pg~~~~y~~~~-~~~~Gt~~yH~h~~~~~~ 120 (178)
|..|.+......+..|+++.|+..+ +..+|+|.-|.-..-+..
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~ 114 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDA 114 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTT
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccC
Confidence 4555444444578999998887766 478999855554443333
No 65
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=70.54 E-value=28 Score=29.97 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred cccccCCCCeEEEEEEe
Q 035484 86 TQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 86 ~~~~i~pg~~~~y~~~~ 102 (178)
...||.|||+++.+.++
T Consensus 336 d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 336 DQSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCCcCCCcceEEEEEE
Confidence 35589999999999876
No 66
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=70.23 E-value=20 Score=25.71 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=35.3
Q ss_pred CceEEEecCCEEEEEEEe---CCCCCcceeecC----cccc-CCCCCCCCCCccccccCCCCeEEEEEEe
Q 035484 41 GLAIAVYEGDNVQIKVTN---RVAQNTTIRWHG----IRQL-RTGWSDGPAYITQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 41 gp~i~~~~Gd~v~v~~~N---~~~~~~~~H~HG----~~~~-~~~~~DG~~~~~~~~i~pg~~~~y~~~~ 102 (178)
+..=.+++|+.+.+.+.= ..........|+ +..+ ..+..||--. ..||+.+|+.++|.+.+
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 445567788877777642 222223333343 2222 1112566433 47999999999998865
No 67
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=66.75 E-value=10 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCcc---eeecCccccCCC---CCCCCCCccccccCCCCeEEEE
Q 035484 53 QIKVTNRVAQNTT---IRWHGIRQLRTG---WSDGPAYITQCPIKGGQSYTYE 99 (178)
Q Consensus 53 ~v~~~N~~~~~~~---~H~HG~~~~~~~---~~DG~~~~~~~~i~pg~~~~y~ 99 (178)
.|++.|...++.- =|||=.+..... .-+|+-+ .|..+.||++++|.
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~Yt 84 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYT 84 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEc
Confidence 4777788776644 388754432210 0233322 36789999999985
No 68
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=63.78 E-value=62 Score=24.61 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=45.1
Q ss_pred eEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh-
Q 035484 43 AIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA- 120 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~- 120 (178)
.|.+..|..|++.++-.. .-|++..-.+... +| +-||..-...+.+ +++|+|.-.|.- ++...
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP~lgvK----~D---------avPGr~n~l~~~~-~~~G~y~gqCsElCG~gHs 138 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVPSLGIK----AD---------AIPGRLHKINTFI-LREGVFYGQCSEMCGTLHG 138 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeeccccCce----ee---------ccCCceEEEEEec-CCCeEEEEEcchhcCcCcc
Confidence 577888888888765442 2233333333211 33 3457777777765 899999999984 33333
Q ss_pred ccEEEEEEEcC
Q 035484 121 SVYGAFIIYPR 131 (178)
Q Consensus 121 Gl~G~liV~~~ 131 (178)
.|.+.+.|.+.
T Consensus 139 ~M~~~V~vvs~ 149 (162)
T PTZ00047 139 FMPIVVEAVSP 149 (162)
T ss_pred CceEEEEEeCH
Confidence 57776666553
No 69
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=60.63 E-value=13 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.1
Q ss_pred cccCCCCeEEEEEEe---cccCCceEEeechh
Q 035484 88 CPIKGGQSYTYEFTI---VNQRGTLLWHAHHS 116 (178)
Q Consensus 88 ~~i~pg~~~~y~~~~---~~~~Gt~~yH~h~~ 116 (178)
.||+||++++..+.. +...|+|.|+|-..
T Consensus 97 ~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 97 EPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 489999999999943 34569999999853
No 70
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=59.94 E-value=41 Score=26.87 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=46.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..|++.+++.. .-|+....++... .| +-||..-...|.+ +++|+|.--|.- ++...
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~vP~~~~k----~d---------aiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIHSWTVPSLGVK----VD---------AVPGRLNQIGFTI-TRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-ccccccccccCcc----ee---------cCCCceEEEEEEe-CCCEEEEEEChhhcCcCc
Confidence 4678889999999999853 2333322222211 33 3468888878875 899999888873 33332
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
-|...+.|.+.
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 56666665543
No 71
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=59.39 E-value=14 Score=32.92 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=47.3
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeechhhH
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHHSWQ 118 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~~~~ 118 (178)
-+..+++++.+++.|+|..... .-.||+.-. .|+. .-.+.|.-....+|.. ++.|++||.|....+
T Consensus 548 ~~staps~~l~ef~Vkq~DEVt--~l~tnld~V----ed~t----hgfv~p~~~v~~~v~p-q~tasvtf~a~kpgv 613 (637)
T COG4263 548 MTSTAPSFGLTEFKVKQGDEVT--VLTTNLDEV----EDLT----HGFVIPNYGVNMEVKP-QRTASVTFYADKPGV 613 (637)
T ss_pred EeeccCCCceEEEEEecCcEEE--EEeccccee----cccc----ceeeeccCceEEEEcc-CCceEEEEEccCCee
Confidence 4567888999999999986554 445666542 3443 3467787888888864 999999999976543
No 72
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=57.96 E-value=51 Score=23.50 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred ceEEEecCCEEEEEEEeCCCC-----Ccceee--cCccccCCC-CCCCCCCc-cccccCCCCeEEEEEEe
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQ-----NTTIRW--HGIRQLRTG-WSDGPAYI-TQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~-----~~~~H~--HG~~~~~~~-~~DG~~~~-~~~~i~pg~~~~y~~~~ 102 (178)
..=.+++|+.+.+++.=...+ .+.+|+ -|+..+... ..|+-... ..||+.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 455677788877776422221 222233 244333211 24554332 57999999999999865
No 73
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=55.22 E-value=29 Score=25.24 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=9.1
Q ss_pred ccccCCCCeEEEE
Q 035484 87 QCPIKGGQSYTYE 99 (178)
Q Consensus 87 ~~~i~pg~~~~y~ 99 (178)
|..|.||++|.|.
T Consensus 73 qP~L~PGe~F~Y~ 85 (127)
T PRK05461 73 QPVLAPGESFEYT 85 (127)
T ss_pred CceECCCCCeEEe
Confidence 4457899877664
No 74
>PRK13202 ureB urease subunit beta; Reviewed
Probab=52.72 E-value=71 Score=22.44 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=40.9
Q ss_pred eEEEecC--CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCc
Q 035484 43 AIAVYEG--DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGT 108 (178)
Q Consensus 43 ~i~~~~G--d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt 108 (178)
.|.+.+| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.+.- .-.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV--PLGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE--EccCC
Confidence 5888998 589999999997654 346654333211 1111244455567789999998873 44554
No 75
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.44 E-value=52 Score=26.39 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=45.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|+.+++.+++. +.-|+...-++.. ..| +-||..-...|.+ +++|+|.--|.- ++...
T Consensus 144 n~lvlP~~~~v~~~itS~-DViHsf~vp~lg~----k~d---------aiPG~~~~~~~~~-~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA-DVLHSFAVPSLSV----KID---------AVPGRLNQTSFFI-KRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeC-chhccccccccCc----eeE---------ccCCceEeEEEEe-CCCEEEEEEChhhcCccc
Confidence 468899999999999987 2222222222211 123 3468777777765 899999988874 23222
Q ss_pred -ccEEEEEEEc
Q 035484 121 -SVYGAFIIYP 130 (178)
Q Consensus 121 -Gl~G~liV~~ 130 (178)
-|-..+.+.+
T Consensus 209 s~M~i~v~vv~ 219 (234)
T MTH00051 209 SFMPIVIEGVS 219 (234)
T ss_pred ccCeeEEEEEC
Confidence 4555555544
No 76
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=47.22 E-value=26 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=7.7
Q ss_pred ccccCCCCeEEEE
Q 035484 87 QCPIKGGQSYTYE 99 (178)
Q Consensus 87 ~~~i~pg~~~~y~ 99 (178)
+..+.||++|.|.
T Consensus 56 ~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 56 QPVLAPGESFEYT 68 (90)
T ss_dssp --EE-TTEEEEEE
T ss_pred CceECCCCcEEEc
Confidence 3457899977775
No 77
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=45.13 E-value=1.1e+02 Score=24.40 Aligned_cols=75 Identities=17% Similarity=0.033 Sum_probs=48.6
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..|++..|..|++.++-.. .+|--.+..-.. .+| +-||..-+..|.+ +++|+|.-.|-- ++...
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHSF~VP~l~~-K~D---------aiPG~~n~~~~~~-~~~G~y~g~CaE~CG~~H 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNSFFIPQLGS-QIY---------AMAGMQTKLHLIA-NEPGVYDGISANYSGPGF 203 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhhhhhhhcCC-eee---------cCCCceEEEEEEe-CCCEEEEEEchhhcCcCc
Confidence 6789999999999887653 333322221111 134 3367777778875 899999988873 33333
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
-|..-++|.++
T Consensus 204 a~M~~~V~v~~~ 215 (226)
T TIGR01433 204 SGMKFKAIATDR 215 (226)
T ss_pred cCCeEEEEEECH
Confidence 67777777664
No 78
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=43.45 E-value=1.8e+02 Score=23.62 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=55.2
Q ss_pred EEEcCccCCceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEe
Q 035484 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWH 112 (178)
Q Consensus 33 ~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH 112 (178)
+++.|.+---.|.++.|..+++++.-..+.|..--. ..+.. |. ...++-++....+|+ +.+.|.|-+-
T Consensus 88 itv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i------~~pdf-gi----aanlpl~q~ssIe~T-~~s~ge~af~ 155 (272)
T COG4633 88 ITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESI------MSPDF-GI----AANLPLNQVSSIEFT-PISKGEYAFL 155 (272)
T ss_pred EEEeCCccceeEEEecCcceEeeeccCCCCcchhhc------ccccc-cc----cccCCcCceeEEEec-cccccchhhh
Confidence 666776666789999999999999888776543111 00000 11 113455788888887 4899999998
Q ss_pred echhhHhhccEEEEEEEcC
Q 035484 113 AHHSWQRASVYGAFIIYPR 131 (178)
Q Consensus 113 ~h~~~~~~Gl~G~liV~~~ 131 (178)
|-... |.|.+.|+..
T Consensus 156 cgmnm----~~G~~~vet~ 170 (272)
T COG4633 156 CGMNM----FRGNIQVETL 170 (272)
T ss_pred cchhh----ccCeeEEEec
Confidence 88654 5566667655
No 79
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=24 Score=24.63 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.6
Q ss_pred EEEcCccCCceEEEecCCEEEEEEEeCCCC
Q 035484 33 LTVNGEYSGLAIAVYEGDNVQIKVTNRVAQ 62 (178)
Q Consensus 33 ~~~Ng~~pgp~i~~~~Gd~v~v~~~N~~~~ 62 (178)
..+||+.--|-=.++.||.++|++.|..-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 689998778888999999999999888543
No 80
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.29 E-value=1.5e+02 Score=23.59 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=45.7
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..+++.++-.. .+| +-..+. -|. +.-+-||..-...|.+ +++|+|+-.|.- ++...
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViH--sf~ip~----~~~----k~da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H 204 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VLH--SWAVPA----LGV----KMDAVPGRLNQTAFIA-SRPGVFYGQCSEICGANH 204 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----ccc--ceeccc----cCC----ccccCCCceEEEEEEe-CCceEEEEEChhhccccc
Confidence 3678888888888876553 333 222221 111 1133468888888875 899999999984 33332
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
.|...+.|.++
T Consensus 205 ~~M~~~v~vv~~ 216 (230)
T MTH00129 205 SFMPIVVEAVPL 216 (230)
T ss_pred cCCcEEEEEECH
Confidence 56666665543
No 81
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=42.80 E-value=97 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.1
Q ss_pred ceEEEecCCEEEEEE
Q 035484 42 LAIAVYEGDNVQIKV 56 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~ 56 (178)
-.|.++.||++.+.|
T Consensus 61 ~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 61 RTVVVRAGDTVTVDF 75 (75)
T ss_pred EEEEEcCCceEEeeC
Confidence 478899999988764
No 82
>PRK07440 hypothetical protein; Provisional
Probab=39.18 E-value=36 Score=21.84 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.2
Q ss_pred EEEEEEcCccCC----ceEEEecCCEEEEE
Q 035484 30 LLLLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 30 ~~~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
.++..+|+.+-- +...++.||+++|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 334899998765 88999999999874
No 83
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=38.98 E-value=31 Score=21.43 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEcCccCC----ceEEEecCCEEEEE
Q 035484 32 LLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 32 ~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
+..+||.+-. +...++.||+|+|-
T Consensus 33 av~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 33 AVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 3789997654 88889999999874
No 84
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=34.86 E-value=42 Score=20.85 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=18.7
Q ss_pred EEEcCccCCce----EEEecCCEEEEE
Q 035484 33 LTVNGEYSGLA----IAVYEGDNVQIK 55 (178)
Q Consensus 33 ~~~Ng~~pgp~----i~~~~Gd~v~v~ 55 (178)
..+||++-... ..++.||+|.+-
T Consensus 33 V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 33 VALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEEE
Confidence 78999876544 899999998873
No 85
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=34.80 E-value=1.6e+02 Score=20.58 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=40.0
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCc
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGT 108 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt 108 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.+.- .-.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~ 87 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV--AIGGN 87 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE--EccCc
Confidence 4677776 789999999997654 346664333211 1111244455567889999998873 44554
No 86
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=34.70 E-value=43 Score=21.12 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=17.1
Q ss_pred eeEEEEEEcCccCC---ceEEEecCCEEEEE
Q 035484 28 TKLLLLTVNGEYSG---LAIAVYEGDNVQIK 55 (178)
Q Consensus 28 ~~~~~~~~Ng~~pg---p~i~~~~Gd~v~v~ 55 (178)
...+ +.+||+++- -.+.++.||+|++.
T Consensus 39 ~~W~-~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWM-YYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEE-EEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeE-EEECCEEhhcCcceeEeCCCCEEEeC
Confidence 3466 889998763 68889999998863
No 87
>PRK06437 hypothetical protein; Provisional
Probab=32.17 E-value=62 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=20.1
Q ss_pred EEEEcCccCCceEEEecCCEEEEE
Q 035484 32 LLTVNGEYSGLAIAVYEGDNVQIK 55 (178)
Q Consensus 32 ~~~~Ng~~pgp~i~~~~Gd~v~v~ 55 (178)
+..+||.+--+...++.||+|.+-
T Consensus 38 aV~vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 38 VVIVNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred EEEECCEECCCceEcCCCCEEEEE
Confidence 377999876688899999999874
No 88
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.90 E-value=1.8e+02 Score=20.35 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=40.3
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCCCCCC-----C----CCCccccccCCCCeEEEEEEecccCCce
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRTGWSD-----G----PAYITQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~~~~D-----G----~~~~~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=......-..| | .|.-|..-..||++++.+. + .-.|.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~gG~r 88 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVEL-V-PLAGAR 88 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEE-E-EccCce
Confidence 4667776 889999999997654 3466643332110011 2 4445556778999999887 3 445543
No 89
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=30.43 E-value=50 Score=20.48 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEEcCccCC----ceEEEecCCEEEEE
Q 035484 32 LLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 32 ~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
+..+|+.+-. +...++.||+|.|-
T Consensus 32 avavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 32 ATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred EEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 4899998754 37889999999873
No 90
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=30.16 E-value=21 Score=27.64 Aligned_cols=29 Identities=14% Similarity=0.388 Sum_probs=24.1
Q ss_pred EEecCCEEEEEEEeCCCCCcceeecCccc
Q 035484 45 AVYEGDNVQIKVTNRVAQNTTIRWHGIRQ 73 (178)
Q Consensus 45 ~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~ 73 (178)
....++++...+.|.+....++||||+--
T Consensus 72 ~~n~~~~~~~d~~~rlt~~~s~~W~~vl~ 100 (191)
T KOG4387|consen 72 PGNDRKPGILDFQERLTVAKSMNWHGVLS 100 (191)
T ss_pred cccCCCCcEEeccchhheeeecccceEEe
Confidence 34456788899999999999999999764
No 91
>smart00363 S4 S4 RNA-binding domain.
Probab=29.61 E-value=61 Score=18.50 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.4
Q ss_pred EEEcCccC-CceEEEecCCEEEEEE
Q 035484 33 LTVNGEYS-GLAIAVYEGDNVQIKV 56 (178)
Q Consensus 33 ~~~Ng~~p-gp~i~~~~Gd~v~v~~ 56 (178)
+.+||+.. -|...++.||.|.+..
T Consensus 28 i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 28 VKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred EEECCEEecCCCeEeCCCCEEEEcc
Confidence 67899866 6888889999988765
No 92
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=29.55 E-value=38 Score=20.64 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=18.3
Q ss_pred EEEcCccC-CceEEEecCCEEEE
Q 035484 33 LTVNGEYS-GLAIAVYEGDNVQI 54 (178)
Q Consensus 33 ~~~Ng~~p-gp~i~~~~Gd~v~v 54 (178)
..+||+.- -|-.+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 67899865 68889999999876
No 93
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=28.90 E-value=55 Score=20.79 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEcCccCCceEEEecCCEEEE
Q 035484 32 LLTVNGEYSGLAIAVYEGDNVQI 54 (178)
Q Consensus 32 ~~~~Ng~~pgp~i~~~~Gd~v~v 54 (178)
+..+||.+--+...++.||+|.+
T Consensus 41 ~v~vNg~iv~~~~~l~~gD~Vei 63 (70)
T PRK08364 41 IAKVNGKVALEDDPVKDGDYVEV 63 (70)
T ss_pred EEEECCEECCCCcCcCCCCEEEE
Confidence 38899987667788999999886
No 94
>PRK13205 ureB urease subunit beta; Reviewed
Probab=28.85 E-value=2.5e+02 Score=21.18 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=41.5
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCceE
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLL 110 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~ 110 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.++ + .-.|.--
T Consensus 12 ~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~L-V-~igG~R~ 89 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNL-V-AIGGDRI 89 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEE-E-EccCceE
Confidence 4677777 889999999997654 446663332211 111124555556778999999987 3 4555543
Q ss_pred E
Q 035484 111 W 111 (178)
Q Consensus 111 y 111 (178)
-
T Consensus 90 V 90 (162)
T PRK13205 90 V 90 (162)
T ss_pred E
Confidence 3
No 95
>PRK13204 ureB urease subunit beta; Reviewed
Probab=27.84 E-value=2.7e+02 Score=21.07 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=40.8
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCce
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.++ + .-.|.-
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L-V-~~gG~r 111 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTL-V-PFAGKR 111 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEE-E-EccCce
Confidence 4777777 789999999997654 346654333211 111124444556778999999987 3 445553
No 96
>PF09962 DUF2196: Uncharacterized conserved protein (DUF2196); InterPro: IPR019240 A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895 from COG. The function is unknown.
Probab=27.74 E-value=66 Score=20.42 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=23.7
Q ss_pred EecCCEEEEEEEeCCCC-------------CcceeecCccccCCCCCCCC
Q 035484 46 VYEGDNVQIKVTNRVAQ-------------NTTIRWHGIRQLRTGWSDGP 82 (178)
Q Consensus 46 ~~~Gd~v~v~~~N~~~~-------------~~~~H~HG~~~~~~~~~DG~ 82 (178)
++.|..|.|.+.+.-.. ..+.|-||+.+.- .||.
T Consensus 9 I~~G~~V~IVlK~dQ~tg~lt~GiV~~iLT~s~~HP~GIKVrL---~~G~ 55 (62)
T PF09962_consen 9 IKPGITVEIVLKQDQRTGKLTEGIVKDILTNSPTHPHGIKVRL---EDGQ 55 (62)
T ss_pred ccCCCEEEEEECCCCCcCccccEEhheeecCCCCCCCCcEEEe---cCCC
Confidence 46788888877776432 4568999998864 5664
No 97
>PRK01777 hypothetical protein; Validated
Probab=27.07 E-value=48 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEEEEcCccCCceEEEecCCEEEEE
Q 035484 30 LLLLTVNGEYSGLAIAVYEGDNVQIK 55 (178)
Q Consensus 30 ~~~~~~Ng~~pgp~i~~~~Gd~v~v~ 55 (178)
.. ..|||+.-...=.++.||+|+|-
T Consensus 50 ~~-vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 50 NK-VGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred ce-EEEeCeECCCCCcCCCCCEEEEe
Confidence 35 78999888888899999999873
No 98
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=26.42 E-value=76 Score=20.10 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=22.1
Q ss_pred EecCCEEEEEEEeCCC-------------CCcceeecCccccCCCCCCCC
Q 035484 46 VYEGDNVQIKVTNRVA-------------QNTTIRWHGIRQLRTGWSDGP 82 (178)
Q Consensus 46 ~~~Gd~v~v~~~N~~~-------------~~~~~H~HG~~~~~~~~~DG~ 82 (178)
++.|..|.|.++..-. ...+.|-||+.++- .||.
T Consensus 8 I~~G~~V~IvlK~DQ~tG~lt~G~V~diLT~s~~Hp~GIKVrL---~dG~ 54 (62)
T TIGR03833 8 IKPGLSVDIVLKQDQRTGKLTRGIVKDILTNSPTHPHGIKVRL---EDGQ 54 (62)
T ss_pred cCCCCEEEEEEeccCCCCceeeEEhhhhhcCCCCCCCceEEEE---ecCC
Confidence 3456777776665432 24578999998864 5664
No 99
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.03 E-value=2.8e+02 Score=22.28 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=45.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..|++.++-. +.-|+.....+... .|. -||+.-...|.+ +++|.|.-.|.- ++...
T Consensus 151 n~lvlP~~~~v~~~~tS~-DViHsf~iP~lgvK----~Da---------iPG~~n~~~~~~-~~~G~y~g~C~e~CG~~H 215 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA-DVLHSFAVPSLGLK----IDA---------VPGRLNQTGFFI-KRPGVFYGQCSEICGANH 215 (240)
T ss_pred ceEEEecCCEEEEEEEcC-CcccceeecccCce----eec---------CCCcceeEEEEc-CCCEEEEEEchhhcCcCc
Confidence 468888899988887654 33344333333221 343 357777777765 899999988874 33332
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
-|...+.|.++
T Consensus 216 s~M~~~v~vv~~ 227 (240)
T MTH00023 216 SFMPIVIEAVSL 227 (240)
T ss_pred cCCeEEEEEECH
Confidence 56655555543
No 100
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=25.89 E-value=1.3e+02 Score=21.98 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=28.5
Q ss_pred ecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEE
Q 035484 47 YEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYT 97 (178)
Q Consensus 47 ~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~ 97 (178)
+.+..+.|.|.|.++.+.-+.|- + .+|.+ .....+.||+++.
T Consensus 4 ~s~~~~~v~F~N~t~~~v~~~Wi--d------~~G~~-~~Y~~l~pg~~~~ 45 (141)
T cd05468 4 NSRVPSTVRFVNRTDRPVELYWI--D------YDGKP-VSYGTLQPGETVR 45 (141)
T ss_pred CCCceEEEEEEeCCCCeEEEEEE--C------CCCCE-EEeeeeCCCCEEe
Confidence 34677899999999999888882 2 22321 1234688888864
No 101
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=25.37 E-value=2.5e+02 Score=24.37 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=27.3
Q ss_pred eEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCC
Q 035484 43 AIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPA 83 (178)
Q Consensus 43 ~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~ 83 (178)
...++.|++..+++....-.|-.-|.|-+... .||.|
T Consensus 100 S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv----~~~Gp 136 (399)
T TIGR03079 100 SGPLEIGRDYEFEVTLQARIPGRHHMHAMLNV----KDAGP 136 (399)
T ss_pred eeEeecCCceeEEEEEeeccCCcccceeEEEe----ccCCC
Confidence 34577899999999888888888888876532 55544
No 102
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=25.17 E-value=87 Score=21.95 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=13.7
Q ss_pred ceEEEecCCEEEEEEEeC
Q 035484 42 LAIAVYEGDNVQIKVTNR 59 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~ 59 (178)
-++.+++||+|.|++...
T Consensus 91 ~vl~L~~GD~V~v~~~~~ 108 (127)
T PF00386_consen 91 AVLQLNKGDTVWVRLDSG 108 (127)
T ss_dssp EEEEE-TT-EEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEecC
Confidence 578999999999998864
No 103
>PRK13198 ureB urease subunit beta; Reviewed
Probab=25.16 E-value=3e+02 Score=20.74 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=40.9
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCce
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.++. .-.|.-
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV--~~gG~r 116 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI--PFGGKQ 116 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE--EccCce
Confidence 4778887 889999999997654 446663332211 1111245455667889999999873 445543
No 104
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=25.07 E-value=76 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.136 Sum_probs=19.5
Q ss_pred EEecCCEEEEEEEeCCCCCcceeec
Q 035484 45 AVYEGDNVQIKVTNRVAQNTTIRWH 69 (178)
Q Consensus 45 ~~~~Gd~v~v~~~N~~~~~~~~H~H 69 (178)
.++.||+|++.|.+.........+|
T Consensus 88 ~lk~G~~V~F~~~~~~~~~~i~~i~ 112 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNLSLLQDIK 112 (115)
T ss_pred cCCCCCEEEEEEEEcCCcEEEEEEe
Confidence 5789999999999887776555443
No 105
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.68 E-value=90 Score=20.72 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.1
Q ss_pred eeEEEEEEcCccCCceEEEecCCEEEEE
Q 035484 28 TKLLLLTVNGEYSGLAIAVYEGDNVQIK 55 (178)
Q Consensus 28 ~~~~~~~~Ng~~pgp~i~~~~Gd~v~v~ 55 (178)
+... +.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~-i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGL-ILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEE-EEECCEECCCcccCCCCCEEEEE
Confidence 4566 88999998999999999999874
No 106
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=24.64 E-value=97 Score=19.87 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCccCC----ceEEEecCCEEEEE
Q 035484 31 LLLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 31 ~~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
++..+||++-. ....++.||+|+|.
T Consensus 34 vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 34 VAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred EEEEECCEEccchhhhhccccCCCEEEEE
Confidence 34899998654 88899999999874
No 107
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.37 E-value=2.8e+02 Score=21.78 Aligned_cols=75 Identities=13% Similarity=-0.004 Sum_probs=48.4
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..|++..|..|++.++-.. .+|---+..-.. ..| +-||..-...|.+ +++|+|.-.|-- ++...
T Consensus 130 n~l~iP~g~~v~~~ltS~D----ViHsf~vP~l~~-k~d---------aiPG~~~~~~~~~-~~~G~y~g~Cae~CG~~H 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TMTSFWIPQLGG-QKY---------AMTGMTMNWYLQA-DQVGTYRGRNANFNGEGF 194 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hhhhhhchhhCc-eee---------cCCCceEEEEEEe-CCCEEEEEEehhhcCccc
Confidence 5789999999999987663 333322222111 123 3468888888875 899999888863 33332
Q ss_pred -ccEEEEEEEcC
Q 035484 121 -SVYGAFIIYPR 131 (178)
Q Consensus 121 -Gl~G~liV~~~ 131 (178)
-|...+.|.++
T Consensus 195 s~M~~~v~v~~~ 206 (217)
T TIGR01432 195 ADQTFDVNAVSE 206 (217)
T ss_pred cCCeEEEEEeCH
Confidence 57777776654
No 108
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.35 E-value=3e+02 Score=21.86 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=42.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..+++.++-.. .-|+.....+.. .+| +-||..-...|.+ +++|+|.-.|.- ++...
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf~iP~lg~----k~d---------aiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSWAVPSLGV----KMD---------AVPGRLNQTTFFI-SRTGLFYGQCSEICGANH 204 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccccccccccCc----eee---------cCCCceEEEEEEc-CCCEEEEEEcccccCcCc
Confidence 4678888888888776542 222222222211 133 3468887778865 899999988873 33222
Q ss_pred -ccEEEEEEE
Q 035484 121 -SVYGAFIIY 129 (178)
Q Consensus 121 -Gl~G~liV~ 129 (178)
-|-..+.+.
T Consensus 205 s~M~~~v~vv 214 (229)
T MTH00038 205 SFMPIVIESV 214 (229)
T ss_pred CCCeEEEEEe
Confidence 344444443
No 109
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=24.20 E-value=76 Score=21.61 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCC-cce--eecCccccCCCCCCCCCC------ccccccCCCCeEEEEEEec-ccCCc
Q 035484 51 NVQIKVTNRVAQN-TTI--RWHGIRQLRTGWSDGPAY------ITQCPIKGGQSYTYEFTIV-NQRGT 108 (178)
Q Consensus 51 ~v~v~~~N~~~~~-~~~--H~HG~~~~~~~~~DG~~~------~~~~~i~pg~~~~y~~~~~-~~~Gt 108 (178)
++.++++|.++++ ..+ +....... -.|... .....|.||++..+++.+. .+.|.
T Consensus 18 ~v~v~~~N~~~~~l~~v~~~l~~~~v~----ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 18 TVSVSFTNPSSEPLRNVSLNLCAFTVE----YTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp EEEEEEEE-SSS-EECEEEEEEEEEEE----CTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHEE
T ss_pred EEEEEEEeCCcCccccceeEEEEEEEE----ECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEec
Confidence 4567889999987 432 22111111 122211 1123689999999999872 44544
No 110
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=24.10 E-value=34 Score=24.00 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=6.5
Q ss_pred ceEEeech
Q 035484 108 TLLWHAHH 115 (178)
Q Consensus 108 t~~yH~h~ 115 (178)
.-|||||.
T Consensus 68 vG~YHSHP 75 (119)
T cd08058 68 VGWYHSHP 75 (119)
T ss_pred EEEEecCC
Confidence 35999997
No 111
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=24.09 E-value=96 Score=19.12 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEcCccC----CceEEEecCCEEEEE
Q 035484 32 LLTVNGEYS----GLAIAVYEGDNVQIK 55 (178)
Q Consensus 32 ~~~~Ng~~p----gp~i~~~~Gd~v~v~ 55 (178)
+..+||.+- -....++.||+|.|-
T Consensus 31 ~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 31 AVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 388999863 467889999999873
No 112
>PRK13201 ureB urease subunit beta; Reviewed
Probab=24.02 E-value=3e+02 Score=20.26 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=41.6
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCC---------CCCCCCCCccccccCCCCeEEEEEEecccCCceE
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRT---------GWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLL 110 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~---------~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~ 110 (178)
.|.+..| .++.+.|+|..+-|. .-|+|=...... +..-..|.-|..-..||++++.++ + .-.|.--
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L-V-~igG~r~ 89 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQL-V-EYAGKRK 89 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEE-E-EccCceE
Confidence 4677776 789999999997654 446663332211 111124555566788999999987 3 4556543
Q ss_pred E
Q 035484 111 W 111 (178)
Q Consensus 111 y 111 (178)
-
T Consensus 90 V 90 (136)
T PRK13201 90 I 90 (136)
T ss_pred E
Confidence 3
No 113
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=23.62 E-value=73 Score=19.55 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.1
Q ss_pred EEEEcCccCC----ceEEEecCCEEEEE
Q 035484 32 LLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 32 ~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
+..+||.+-. ....++.||+|.|-
T Consensus 32 ~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 32 AVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred EEEECCEEcCchhcccccCCCCCEEEEE
Confidence 3889998643 36779999999873
No 114
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=23.46 E-value=84 Score=19.81 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEEcCccCC----ceEEEecCCEEEEE
Q 035484 30 LLLLTVNGEYSG----LAIAVYEGDNVQIK 55 (178)
Q Consensus 30 ~~~~~~Ng~~pg----p~i~~~~Gd~v~v~ 55 (178)
.++..+|+.+-- +...++.||+++|-
T Consensus 32 ~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 32 IVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 334899998644 56889999999874
No 115
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.25 E-value=3.7e+02 Score=21.35 Aligned_cols=74 Identities=5% Similarity=-0.019 Sum_probs=43.6
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..|++.++-.. .+| +-..+. -|+ +.-+-||..-...|.+ +++|.|+..|.- ++...
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViH--sf~ip~----lg~----k~daiPG~~~~~~~~~-~~~G~~~g~Cse~CG~~H 204 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED----VLH--SWAVPS----LGL----KTDAIPGRLNQTTLMS-TRPGLYYGQCSEICGSNH 204 (227)
T ss_pred ceEEecCCCEEEEEEEECc----ccc--cccccc----ccc----ceecCCCceEEEEEec-CCcEEEEEECccccCcCc
Confidence 3677888888888876553 223 222221 111 1123468888878865 899999998874 33322
Q ss_pred -ccEEEEEEEc
Q 035484 121 -SVYGAFIIYP 130 (178)
Q Consensus 121 -Gl~G~liV~~ 130 (178)
-|...+.|.+
T Consensus 205 ~~M~~~v~v~~ 215 (227)
T MTH00098 205 SFMPIVLELVP 215 (227)
T ss_pred CCceEEEEEeC
Confidence 4555555544
No 116
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=23.20 E-value=1.5e+02 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCCcCCceEEEEEEEEEEEEEecCceeEEEEEEcCc
Q 035484 3 PFSSSQTIKSFLFNVEWKTVSRLCNTKLLLLTVNGE 38 (178)
Q Consensus 3 ~~~~~~~~~~~~l~i~~~~~~~~g~~~~~~~~~Ng~ 38 (178)
++..++.++.|+++-.....+|.|+-... ..||+.
T Consensus 56 AlT~~G~IksY~Id~~si~~NPMGGI~v~-liIN~d 90 (122)
T PF07006_consen 56 ALTEEGKIKSYEIDKDSIEHNPMGGIMVR-LIINDD 90 (122)
T ss_pred hhccCCeeEEEEEcccceeeCCCCCEEEE-EEECCC
Confidence 34577999999999999888888776555 778874
No 117
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.90 E-value=2.7e+02 Score=19.42 Aligned_cols=65 Identities=20% Similarity=0.173 Sum_probs=39.9
Q ss_pred eEEEecC-CEEEEEEEeCCCCCc--ceeecCccccCCCCCC-----C----CCCccccccCCCCeEEEEEEecccCCce
Q 035484 43 AIAVYEG-DNVQIKVTNRVAQNT--TIRWHGIRQLRTGWSD-----G----PAYITQCPIKGGQSYTYEFTIVNQRGTL 109 (178)
Q Consensus 43 ~i~~~~G-d~v~v~~~N~~~~~~--~~H~HG~~~~~~~~~D-----G----~~~~~~~~i~pg~~~~y~~~~~~~~Gt~ 109 (178)
.|.+..| .++++.|+|..+-|. .-|+|=......-..| | .|.-|..-..||++++.+. + .-.|.-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~~G~r 88 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVEL-V-PIGGKR 88 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEE-E-EccCce
Confidence 4666666 789999999997654 3466643332210011 2 4444556678999999887 3 445543
No 118
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=22.64 E-value=2.2e+02 Score=18.48 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=15.1
Q ss_pred EEEecCCEEEEEEEeCCCCC
Q 035484 44 IAVYEGDNVQIKVTNRVAQN 63 (178)
Q Consensus 44 i~~~~Gd~v~v~~~N~~~~~ 63 (178)
|.++.||++.|.+.-+.+..
T Consensus 1 I~v~~g~~~~I~L~~npstG 20 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTG 20 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGT
T ss_pred CeecCCCEEEEEECCCCCCC
Confidence 67899999999997665533
No 119
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=22.41 E-value=89 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=19.1
Q ss_pred EEEEEcCcc-C---CceEEEecCCEEEEE
Q 035484 31 LLLTVNGEY-S---GLAIAVYEGDNVQIK 55 (178)
Q Consensus 31 ~~~~~Ng~~-p---gp~i~~~~Gd~v~v~ 55 (178)
++..+|+.+ | =....+++||+|.|-
T Consensus 32 vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 32 AALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 348999987 4 267789999999873
No 120
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.85 E-value=4e+02 Score=21.07 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=44.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCcceeecCccccCCCCCCCCCCccccccCCCCeEEEEEEecccCCceEEeech-hhHhh
Q 035484 42 LAIAVYEGDNVQIKVTNRVAQNTTIRWHGIRQLRTGWSDGPAYITQCPIKGGQSYTYEFTIVNQRGTLLWHAHH-SWQRA 120 (178)
Q Consensus 42 p~i~~~~Gd~v~v~~~N~~~~~~~~H~HG~~~~~~~~~DG~~~~~~~~i~pg~~~~y~~~~~~~~Gt~~yH~h~-~~~~~ 120 (178)
..+.+..|..+++.++-.. .+|--.+..-.. ..| .-||..-...|.+ +++|+|.--|.- ++...
T Consensus 140 n~l~lP~~~~v~~~~tS~D----ViHsf~vP~lg~-k~d---------aiPG~~n~~~~~~-~~~G~~~g~CsE~CG~~H 204 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD----VLHSWTLPSLGL-KMD---------AVPGRLNQLAFLS-SRPGSFYGQCSEICGANH 204 (225)
T ss_pred ceEEEecCCEEEEEEEeCC----hhhccccccccc-ccc---------CCCCeEEEEEEEc-CCCEEEEEEcccccCcCc
Confidence 4678888888888877653 233222221111 133 2368777778865 899999888873 33322
Q ss_pred -ccEEEEEEEc
Q 035484 121 -SVYGAFIIYP 130 (178)
Q Consensus 121 -Gl~G~liV~~ 130 (178)
-|...+.|.+
T Consensus 205 s~M~~~v~vv~ 215 (225)
T MTH00168 205 SFMPIVVEFVP 215 (225)
T ss_pred CCCeEEEEEeC
Confidence 4555555554
No 121
>PLN03148 Blue copper-like protein; Provisional
Probab=21.64 E-value=2.4e+02 Score=21.50 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.5
Q ss_pred EEEecccCCceEEeechhhHhh-ccEEEEEEEcC
Q 035484 99 EFTIVNQRGTLLWHAHHSWQRA-SVYGAFIIYPR 131 (178)
Q Consensus 99 ~~~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~ 131 (178)
.+++ +++|+++|-|-. +|=. ||-=.+.|.+.
T Consensus 89 ~v~L-~~~G~~YFIcg~-ghC~~GmKl~I~V~~~ 120 (167)
T PLN03148 89 FIPL-NKAKRYYFICGN-GQCFNGMKVTILVHPL 120 (167)
T ss_pred EEEe-cCCccEEEEcCC-CccccCCEEEEEEcCC
Confidence 4555 689999999984 4433 99989999865
No 122
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=21.19 E-value=3.2e+02 Score=20.66 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=35.2
Q ss_pred CCceEEEecCCEEEEEEEeCCC---CCcceeecCc-------cccCCCCCCCCCCc-----cccccCCCCeEEEEEEe
Q 035484 40 SGLAIAVYEGDNVQIKVTNRVA---QNTTIRWHGI-------RQLRTGWSDGPAYI-----TQCPIKGGQSYTYEFTI 102 (178)
Q Consensus 40 pgp~i~~~~Gd~v~v~~~N~~~---~~~~~H~HG~-------~~~~~~~~DG~~~~-----~~~~i~pg~~~~y~~~~ 102 (178)
|.+.=.+++|.+..|.+.=..+ ....--.||. .++.. ..||.... -.||+.+|+.++|.+.+
T Consensus 46 ~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~-~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 46 PTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLP-ASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred CCCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCC-CCcccccccccccccCcccCCCceEEEEEe
Confidence 3345567788887776643322 2212222332 12222 25664443 47899999999998876
Done!