BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035485
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L6H|A Chain A, Solution Structure Of Plant Nsltp2 Purified From Rice
          (Oryza Sativa)
          Length = 69

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 41/66 (62%)

Query: 28 CNPLELSPCASAITGANAPSAICCSKLKEQRICLCQYMKDPNLRKFVNSPNARKVATVCG 87
          CN  +L+ C  AI G   P+A CCS L+ Q+ C CQ+ KDP   ++VNSPNARK  + CG
Sbjct: 3  CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCG 62

Query: 88 SPFPRC 93
             P C
Sbjct: 63 IALPTC 68


>pdb|1N89|A Chain A, Solution Structure Of A Liganded Type 2 Wheat
          Non-Specific Lipid Transfer Protein
 pdb|1TUK|A Chain A, Crystal Stucture Of Liganted Type 2 Non Specific Lipid
          Transfer Protein From Wheat
          Length = 67

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%)

Query: 28 CNPLELSPCASAITGANAPSAICCSKLKEQRICLCQYMKDPNLRKFVNSPNARKVATVCG 87
          C   +L+ CASAI     PS  CC  L+ Q+ C CQY KDP   +++ SP+AR   T CG
Sbjct: 2  CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCG 61

Query: 88 SPFPRC 93
             P C
Sbjct: 62 LAVPHC 67


>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
          Protein Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 32 ELSPCASAITGAN--APSAICCSKLKEQRI-CLCQYMKDPNLRKFVNSPN-ARKVATVCG 87
          EL+ C  A++  N  +PS  CC+ L+     CLC Y   P L  F   P  A  +   CG
Sbjct: 11 ELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCG 70


>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
          Length = 93

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 15/82 (18%)

Query: 21 LSMGAMTCNPLELSPCASAITGANAPSAICCSKLKE-----------QRICLCQYMKDPN 69
          +S GA+T    +LSPC + +TG   PS  CC  +K+           Q  C C      +
Sbjct: 2  ISCGAVTS---DLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGS 58

Query: 70 LRKFVNSPNARKVATVCGSPFP 91
          + K  N+ NA  +   CG   P
Sbjct: 59 ITKL-NTNNAAALPGKCGVNIP 79


>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
          Protein-1 Complexes From Oryza Sativa
 pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
          Protein-1 Complexes From Oryza Sativa
 pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
          Protein-1 Complexes From Oryza Sativa
 pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer
          Protein-1 Complexes From Oryza Sativa
 pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14
          Structures
 pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
          Length = 91

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 26 MTCNPLE--LSPCASAITGANAPSAICCSKLKE---------QRICLCQYMKDPNLR-KF 73
          +TC  +   + PC +   G   PSA CCS ++           R   C  +K+     K 
Sbjct: 1  ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60

Query: 74 VNSPNARKVATVCGSPFP 91
          +N+ NA  + + CG   P
Sbjct: 61 LNAGNAASIPSKCGVSVP 78


>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
 pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
 pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
          Length = 670

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 60  CLCQYMKDPNLRKFVNSPNARKVATVCGSPFPR 92
           CLC Y   P     + S N ++V     +P P+
Sbjct: 605 CLCMYAMTPERVHRLRSNNVKEVTVCSSTPLPK 637


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,390,747
Number of Sequences: 62578
Number of extensions: 72760
Number of successful extensions: 205
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)