Query 035485
Match_columns 93
No_of_seqs 114 out of 744
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01959 nsLTP2 nsLTP2: Non-spe 99.8 7.2E-22 1.6E-26 117.4 4.2 66 28-93 1-66 (66)
2 cd04660 nsLTP_like nsLTP_like: 99.6 5.7E-16 1.2E-20 93.2 3.5 60 31-91 6-69 (73)
3 PF14368 LTP_2: Probable lipid 99.5 2.4E-15 5.1E-20 93.4 1.7 66 25-91 19-92 (96)
4 cd01960 nsLTP1 nsLTP1: Non-spe 99.5 3.2E-14 6.9E-19 88.2 2.3 65 27-91 2-79 (89)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 1.9E-13 4.1E-18 79.4 2.9 56 33-88 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.0 2.9E-10 6.4E-15 67.0 3.8 60 32-91 7-75 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.8 1.8E-10 4E-15 70.8 -3.9 62 31-92 13-87 (90)
8 cd01958 HPS_like HPS_like: Hyd 94.2 0.053 1.1E-06 33.6 2.6 60 32-91 10-80 (85)
9 PF14547 Hydrophob_seed: Hydro 94.1 0.025 5.5E-07 35.0 1.1 60 32-91 8-79 (85)
10 PRK13733 conjugal transfer pro 53.8 14 0.00031 25.7 2.6 38 1-38 1-38 (171)
11 cd00261 AAI_SS AAI_SS: Alpha-A 38.7 22 0.00048 22.0 1.6 62 32-93 14-108 (110)
12 PF05617 Prolamin_like: Prolam 27.9 50 0.0011 18.7 1.7 20 44-63 26-46 (70)
13 PF10731 Anophelin: Thrombin i 23.7 85 0.0018 18.3 2.1 18 1-18 1-18 (65)
No 1
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.85 E-value=7.2e-22 Score=117.42 Aligned_cols=66 Identities=64% Similarity=1.313 Sum_probs=61.8
Q ss_pred cCcCCcccChhhhcCCCCCChhhHHhhhhccccccccccCcccccCCChHHHHHhhcccCCCCCCC
Q 035485 28 CNPLELSPCASAITGANAPSAICCSKLKEQRICLCQYMKDPNLRKFVNSPNARKVATVCGSPFPRC 93 (93)
Q Consensus 28 C~~~~L~~C~~~v~~~~~Ps~~CC~~v~~~~~C~C~~ik~~~~~~~~~~~~a~~Lp~~Cgv~~p~C 93 (93)
|+..+|.+|++|++++.+||++||+.||+++.|+|+|++++.+..++|+++|.+|+++||+++|+|
T Consensus 1 c~~~~L~~C~~ai~~~~~Ps~~CC~~Lk~~~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~C 66 (66)
T cd01959 1 CNPTQLSPCLPAILGGSPPSAACCAKLKEQQSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPNC 66 (66)
T ss_pred CChhhcccCHHHHhCCCCCCHHHHHHHhcCCCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCCC
Confidence 555789999999998889999999999999999999999998888899999999999999999998
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.60 E-value=5.7e-16 Score=93.25 Aligned_cols=60 Identities=33% Similarity=0.744 Sum_probs=51.5
Q ss_pred CCcccChhhhcCCC---CCChhhHHhhhhcc-ccccccccCcccccCCChHHHHHhhcccCCCCC
Q 035485 31 LELSPCASAITGAN---APSAICCSKLKEQR-ICLCQYMKDPNLRKFVNSPNARKVATVCGSPFP 91 (93)
Q Consensus 31 ~~L~~C~~~v~~~~---~Ps~~CC~~v~~~~-~C~C~~ik~~~~~~~~~~~~a~~Lp~~Cgv~~p 91 (93)
..|.||++|+++++ +||+.||++||+.+ .|+|.+++.+.+. ++|.++|.+||++||+++|
T Consensus 6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~-~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 6 DLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQ-IIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCccc-ccCHHHHHHHHHHcCCCCC
Confidence 36799999999765 58899999999876 9999888765444 4899999999999999988
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.53 E-value=2.4e-15 Score=93.36 Aligned_cols=66 Identities=39% Similarity=0.776 Sum_probs=47.5
Q ss_pred ccccCcCCcccC---hhhhcCCCCCChhhHHhhhh----ccccccccccCcc-cccCCChHHHHHhhcccCCCCC
Q 035485 25 AMTCNPLELSPC---ASAITGANAPSAICCSKLKE----QRICLCQYMKDPN-LRKFVNSPNARKVATVCGSPFP 91 (93)
Q Consensus 25 ~~~C~~~~L~~C---~~~v~~~~~Ps~~CC~~v~~----~~~C~C~~ik~~~-~~~~~~~~~a~~Lp~~Cgv~~p 91 (93)
..+|. .+|.+| ..|++++.+||+.||+++|+ +..|+|++++++. ....+|.+++.+||++||++.|
T Consensus 19 ~~~c~-~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~ 92 (96)
T PF14368_consen 19 CCSCA-NSLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVP 92 (96)
T ss_dssp TTB-H-CCCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S
T ss_pred cchhH-HHHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCC
Confidence 34553 457776 78888667999999999999 3499999999765 3345999999999999999987
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.45 E-value=3.2e-14 Score=88.23 Aligned_cols=65 Identities=32% Similarity=0.645 Sum_probs=52.0
Q ss_pred ccCc--CCcccChhhhcCCC-CCChhhHHhhhhc---------cccccccccCcccccC-CChHHHHHhhcccCCCCC
Q 035485 27 TCNP--LELSPCASAITGAN-APSAICCSKLKEQ---------RICLCQYMKDPNLRKF-VNSPNARKVATVCGSPFP 91 (93)
Q Consensus 27 ~C~~--~~L~~C~~~v~~~~-~Ps~~CC~~v~~~---------~~C~C~~ik~~~~~~~-~~~~~a~~Lp~~Cgv~~p 91 (93)
+|.. ..|.||++|++++. .|++.||+++++. ..|+|+++++...... +|.++|.+||++||++++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence 5666 46899999999765 8999999999982 2688888876433322 899999999999999875
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.40 E-value=1.9e-13 Score=79.44 Aligned_cols=56 Identities=38% Similarity=0.733 Sum_probs=46.6
Q ss_pred cccChhhhcCCC-CCChhhHHhhhhc----cccccccccCccccc-CC-ChHHHHHhhcccCC
Q 035485 33 LSPCASAITGAN-APSAICCSKLKEQ----RICLCQYMKDPNLRK-FV-NSPNARKVATVCGS 88 (93)
Q Consensus 33 L~~C~~~v~~~~-~Ps~~CC~~v~~~----~~C~C~~ik~~~~~~-~~-~~~~a~~Lp~~Cgv 88 (93)
|.||++|++++. .||+.||+++++. ..|+|++++++.... .+ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999874 8999999999984 499999999754432 23 68889999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.03 E-value=2.9e-10 Score=66.98 Aligned_cols=60 Identities=38% Similarity=0.794 Sum_probs=49.5
Q ss_pred CcccChhhhcCC---CCCChhhHHhhhhc-c-ccccccccCcccccC----CChHHHHHhhcccCCCCC
Q 035485 32 ELSPCASAITGA---NAPSAICCSKLKEQ-R-ICLCQYMKDPNLRKF----VNSPNARKVATVCGSPFP 91 (93)
Q Consensus 32 ~L~~C~~~v~~~---~~Ps~~CC~~v~~~-~-~C~C~~ik~~~~~~~----~~~~~a~~Lp~~Cgv~~p 91 (93)
.+.+|.+|++++ ..|++.||+++++. + .|+|..++....... ++..++.+||+.||+..+
T Consensus 7 ~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 7 QLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPP 75 (79)
T ss_pred hHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCC
Confidence 456999999975 38889999999998 6 999998876444433 378889999999999987
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.76 E-value=1.8e-10 Score=70.83 Aligned_cols=62 Identities=24% Similarity=0.602 Sum_probs=50.6
Q ss_pred CCcccChhhhcCCC-CCChhhHHhhhhcc-ccccccccCcccc-----------cCCChHHHHHhhcccCCCCCC
Q 035485 31 LELSPCASAITGAN-APSAICCSKLKEQR-ICLCQYMKDPNLR-----------KFVNSPNARKVATVCGSPFPR 92 (93)
Q Consensus 31 ~~L~~C~~~v~~~~-~Ps~~CC~~v~~~~-~C~C~~ik~~~~~-----------~~~~~~~a~~Lp~~Cgv~~p~ 92 (93)
..+.+|.+|++++. .|+..||++|++.+ .|.|..++..... ..++..+|..||+.||+++|.
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~ 87 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY 87 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 35789999999765 78899999999976 9999988753222 136777899999999999886
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.15 E-value=0.053 Score=33.64 Aligned_cols=60 Identities=25% Similarity=0.527 Sum_probs=42.0
Q ss_pred CcccChhhhcC-----CCCCChhhHHhhhh-----ccccccccccCcccccCCChHH-HHHhhcccCCCCC
Q 035485 32 ELSPCASAITG-----ANAPSAICCSKLKE-----QRICLCQYMKDPNLRKFVNSPN-ARKVATVCGSPFP 91 (93)
Q Consensus 32 ~L~~C~~~v~~-----~~~Ps~~CC~~v~~-----~~~C~C~~ik~~~~~~~~~~~~-a~~Lp~~Cgv~~p 91 (93)
+|.-|..-+.. +.+|.++||.-+++ ...|+|-.+|...++..+|.+- ..-+-..||...|
T Consensus 10 kLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 10 KLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred HhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence 46677776632 34777899999998 2399999998655554444444 5566678999887
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=94.05 E-value=0.025 Score=35.01 Aligned_cols=60 Identities=32% Similarity=0.633 Sum_probs=42.1
Q ss_pred CcccChhhhc-----CCCCCChhhHHhhhh-----ccccccccccCcccc-cCCChH-HHHHhhcccCCCCC
Q 035485 32 ELSPCASAIT-----GANAPSAICCSKLKE-----QRICLCQYMKDPNLR-KFVNSP-NARKVATVCGSPFP 91 (93)
Q Consensus 32 ~L~~C~~~v~-----~~~~Ps~~CC~~v~~-----~~~C~C~~ik~~~~~-~~~~~~-~a~~Lp~~Cgv~~p 91 (93)
+|.-|...+. .+.++...||.-+++ ...|+|..+|...+. ..++.+ +...|-..||...|
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 5678888772 133678899999997 239999888864444 223333 36778888999877
No 10
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=53.80 E-value=14 Score=25.69 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhhccccccCcCCcccChh
Q 035485 1 MKISYAAICIVFVLLLSEAELSMGAMTCNPLELSPCAS 38 (93)
Q Consensus 1 m~~~~~~~~~ll~~~~~~~~~~~~~~~C~~~~L~~C~~ 38 (93)
||..+.++++..+++|.+=+.....++|+..+-..|+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg~~s~f~C~~t~sdqcls 38 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAGTNSEFECNATTSDTCMT 38 (171)
T ss_pred CchhhHHHHHHHHHHhccccCCCCCCCCCCCCCcceee
Confidence 77666666665556666632223257898755555654
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=38.68 E-value=22 Score=21.99 Aligned_cols=62 Identities=18% Similarity=0.441 Sum_probs=41.0
Q ss_pred CcccChhhhcCC----CC-----------CChhhHHhhhhcc-ccccccccCc------cc-------cc---CCChHHH
Q 035485 32 ELSPCASAITGA----NA-----------PSAICCSKLKEQR-ICLCQYMKDP------NL-------RK---FVNSPNA 79 (93)
Q Consensus 32 ~L~~C~~~v~~~----~~-----------Ps~~CC~~v~~~~-~C~C~~ik~~------~~-------~~---~~~~~~a 79 (93)
.|.+|..|+.-. +. ....||.-++..+ .|.|.-|... .. .. ......|
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQAA 93 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHHH
Confidence 578899888621 11 1257999999977 9999888631 00 00 0122359
Q ss_pred HHhhcccCCCC-CCC
Q 035485 80 RKVATVCGSPF-PRC 93 (93)
Q Consensus 80 ~~Lp~~Cgv~~-p~C 93 (93)
..||+.||+.. +.|
T Consensus 94 ~~Lp~~C~~~~~~~C 108 (110)
T cd00261 94 QNLPSMCNLYPPPYC 108 (110)
T ss_pred HhhchhcCCCCCCCC
Confidence 99999999987 455
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=27.85 E-value=50 Score=18.70 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=16.6
Q ss_pred CCCChhhHHhhhhc-cccccc
Q 035485 44 NAPSAICCSKLKEQ-RICLCQ 63 (93)
Q Consensus 44 ~~Ps~~CC~~v~~~-~~C~C~ 63 (93)
...+++||..+.+. +.|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 48889999999995 488876
No 13
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=23.67 E-value=85 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=9.7
Q ss_pred CchhHHHHHHHHHHHHhh
Q 035485 1 MKISYAAICIVFVLLLSE 18 (93)
Q Consensus 1 m~~~~~~~~~ll~~~~~~ 18 (93)
|++-.+++.+|-+.+++.
T Consensus 1 MA~Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAI 18 (65)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 665555555555555443
Done!