BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035486
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
pdb|1Q7G|B Chain B, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
Length = 359
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 162/220 (73%), Gaps = 6/220 (2%)
Query: 16 FYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS----FSEVVAE 71
++EATVGAGLPIIS LR +++TGD + +IEGIFSGTLSY+FN F +++ FS+VV
Sbjct: 141 YHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKV 200
Query: 72 AKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SDLPVRSLVPEPLKACASAEEF 130
AK+ GYTEPDPRDDL+G DVARKV I+ R SG+++E + PV+SL+P+PL++ SA+EF
Sbjct: 201 AKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEF 260
Query: 131 MKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNI 190
+++L +D++L + ++EA +VLR++G VD K V + +Y HPFA L GSDN+
Sbjct: 261 LEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNV 320
Query: 191 IAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230
I+ TKRY P++++G GAGA VTA G+ D++++A L
Sbjct: 321 ISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 359
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1TVE|A Chain A, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
pdb|1TVE|B Chain B, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
Length = 358
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 162/220 (73%), Gaps = 6/220 (2%)
Query: 16 FYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS----FSEVVAE 71
++EATVGAGLPIIS LR +++TGD + +IEGIFSGTLSY+FN F +++ FS+VV
Sbjct: 140 YHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKV 199
Query: 72 AKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SDLPVRSLVPEPLKACASAEEF 130
AK+ GYTEPDPRDDL+G DVARKV I+ R SG+++E + PV+SL+P+PL++ SA+EF
Sbjct: 200 AKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEF 259
Query: 131 MKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNI 190
+++L +D++L + ++EA +VLR++G VD K V + +Y HPFA L GSDN+
Sbjct: 260 LEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNV 319
Query: 191 IAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230
I+ TKRY P++++G GAGA VTA G+ D++++A L
Sbjct: 320 ISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 358
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase
(Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A
Resolution
Length = 327
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 4 LRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTR 63
L SL ++ YEATVG P++ + L + I ++GIF+GT +Y+ + R
Sbjct: 126 LXSLAERNGVRLXYEATVGGAXPVVKLAKRYLALCE-IESVKGIFNGTCNYILSRXEEER 184
Query: 64 -SFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLK 122
+ ++ EA+E GY E DP D+ G D A K++I+A G+K D+ V +
Sbjct: 185 LPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQ---- 240
Query: 123 ACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFA 182
+ E F Q A + G +R + V ++ +V R HP A
Sbjct: 241 --ITPEAF---------------QVAAEKGYTIRLIAEVS--REKLKVSPRLVPFHHPLA 281
Query: 183 QLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRL 226
+ G+ N F T + V G GAG + TA I SD+ +
Sbjct: 282 -IKGTXNAAXFKTD--TAGSIFVAGRGAGKEETASAILSDLYEI 322
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|B Chain B, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|E Chain E, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|F Chain F, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
Length = 332
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 103/224 (45%), Gaps = 38/224 (16%)
Query: 16 FYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEA 75
++EA+V AG P +S L L G +L + GI +GT Y+ R+++E + EA+
Sbjct: 119 YHEASVMAGTPALSFLETL--RGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRL 176
Query: 76 GYTEPDPRDDLSGTDVARKVIILAR---ESGLKL-ELSDLPVRSLVPEPLKACASAEEFM 131
GY E DP D+ G D A K+ +LAR + G E+ + L PE L
Sbjct: 177 GYAEADPTLDVEGIDAAHKLTLLARLLVDPGFPFAEVEAQGIARLTPEVL---------- 226
Query: 132 KQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGR--VELRRYKKDHPFAQLSGSDN 189
Q+AE GE +R V + R V RR +DHP A+ G N
Sbjct: 227 --------------QKAEARGERVRLVASLFGEGGRWRAAVAPRRLPQDHPLARARG--N 270
Query: 190 IIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAP 233
+ + E V GPGAG TA G+F+D+LR S GAP
Sbjct: 271 ALWVRARPLGEA--FVTGPGAGGGATASGLFADLLRFLS--GAP 310
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase
(Np_394635.1) From Thermoplasma Acidophilum At 1.95 A
Resolution
Length = 325
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 17 YEATVGAGLPIISTLR-GLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEA 75
YEATV G+P+ S L +L + + R GI S T++Y+ + RS +VV +A +
Sbjct: 141 YEATVAGGVPLFSVLDYSILPS--KVKRFRGIVSSTINYVIRNXANGRSLRDVVDDAIKK 198
Query: 76 GYTEPDPRDDLSGTDVARKVIILARES-GLKLELSDL 111
G E +P+DDL+G D ARK +IL G + L+D+
Sbjct: 199 GIAESNPQDDLNGLDAARKSVILVNHIFGTEYTLNDV 235
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
Thiobacillus Denitrificans To 2.15a
Length = 444
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 17 YEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGT-RSFSEVVAEAKEA 75
+EA V G+PII LR L T + I + GI +GT +++ + +F +V+ EA+
Sbjct: 134 FEAAVAGGIPIIKALREGL-TANRIEWLAGIINGTSNFILSEXRDKGAAFDDVLKEAQRL 192
Query: 76 GYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLP 135
GY E DP D+ G D A K+ IL S + + P + + E + QL
Sbjct: 193 GYAEADPTFDIEGIDAAHKLTIL---SAIAFGI-----------PXQFERAYTEGISQLT 238
Query: 136 QFDEELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHP----FAQLSGSDNII 191
+ D + AE+ G ++ +G+ A E +ELR + P A + G+ N
Sbjct: 239 RED------VRYAEELGYRIKLLGI--ARRAENGIELRVHPTLIPERRLIANVDGAXN-- 288
Query: 192 AFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDIL 224
A K P + G GAG++ TA + +D++
Sbjct: 289 AVLVKGDAVGPTLYYGAGAGSEPTASAVVADLV 321
>pdb|3C8M|A Chain A, Crystal Structure Of Homoserine Dehydrogenase From
Thermoplasma Volcanium
Length = 331
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 17 YEATVGAGLPIISTLR-GLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEA 75
YEATV G+P+ S + +L + I + GI S T++Y R F +V++EA +
Sbjct: 145 YEATVAGGVPLFSFIDYSVLPS--RIKKFRGIVSLTINYFIRELANKREFDDVLSEATKL 202
Query: 76 GYTEPDPRDDLSGTDVARKVIILARE-SGLKLELSDL 111
G E + +DDL+G D ARK +IL G LSD+
Sbjct: 203 GIVEKNYKDDLTGLDAARKSVILCNHLYGSSYRLSDV 239
>pdb|3JSA|A Chain A, Homoserine Dehydrogenase From Thermoplasma Volcanium
Complexed With Nad
Length = 328
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 17 YEATVGAGLPIISTLR-GLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEA 75
YEATV G+P+ S + +L + I + GI S T++Y R F +V++EA +
Sbjct: 142 YEATVAGGVPLFSFIDYSVLPS--RIKKFRGIVSLTINYFIRELANKREFDDVLSEATKL 199
Query: 76 GYTEPDPRDDLSGTDVARKVIILARE-SGLKLELSDL 111
G E + +DDL+G D ARK +IL G LSD+
Sbjct: 200 GIVEKNYKDDLTGLDAARKSVILCNHLYGSSYRLSDV 236
>pdb|2FU4|A Chain A, Crystal Structure Of The Dna Binding Domain Of E.Coli Fur
(Ferric Uptake Regulator)
pdb|2FU4|B Chain B, Crystal Structure Of The Dna Binding Domain Of E.Coli Fur
(Ferric Uptake Regulator)
Length = 83
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 100 RESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELA-----KQRQEAEDAGEV 154
+++GLK+ L L + ++ EP SAE+ K+L EE+ + + +DAG V
Sbjct: 9 KKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68
Query: 155 LRY 157
R+
Sbjct: 69 TRH 71
>pdb|1HQ0|A Chain A, Crystal Structure Of The Catalytic Domain Of E.Coli
Cytotoxic Necrotizing Factor Type 1
Length = 295
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 1 YLKLRSLQRKSYTHYFYEATVG-AGLPIISTLRG 33
Y+K Y YFY+ TVG G+P ++T G
Sbjct: 53 YIKKDRFDNHGYDQYFYDNTVGPNGIPTLNTYTG 86
>pdb|1HZG|A Chain A, Crystal Structure Of The Inactive C866s Mutant Of The
Catalytic Domain Of E. Coli Cytotoxic Necrotizing
Factor 1
Length = 295
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 1 YLKLRSLQRKSYTHYFYEATVG-AGLPIISTLRG 33
Y+K Y YFY+ TVG G+P ++T G
Sbjct: 53 YIKKDRFDNHGYDQYFYDNTVGPNGIPTLNTYTG 86
>pdb|1FFK|V Chain V, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 143
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 20 TVGAGLPIISTLRGLLETGDHILRI------EGIFSGTLSYLFNSFVGTRSFSEVVAEAK 73
TV AG + +RG +G +R+ EG+ T + NS VG R + EA+
Sbjct: 66 TVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRINSKVGARKRERIEEEAE 125
Query: 74 EAG 76
+AG
Sbjct: 126 DAG 128
>pdb|2W57|A Chain A, Crystal Structure Of The Vibrio Cholerae Ferric Uptake
Regulator (Fur) Reveals Structural Rearrangement Of The
Dna-Binding Domains
pdb|2W57|B Chain B, Crystal Structure Of The Vibrio Cholerae Ferric Uptake
Regulator (Fur) Reveals Structural Rearrangement Of The
Dna-Binding Domains
Length = 150
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 100 RESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELA-----KQRQEAEDAGEV 154
+++GLK+ L L + ++ +P SAEE K+L EE+ + + +DAG V
Sbjct: 9 KDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68
Query: 155 LRY 157
R+
Sbjct: 69 TRH 71
>pdb|2P90|A Chain A, The Crystal Structure Of A Protein Of Unknown Function
From Corynebacterium Glutamicum Atcc 13032
pdb|2P90|B Chain B, The Crystal Structure Of A Protein Of Unknown Function
From Corynebacterium Glutamicum Atcc 13032
pdb|2P90|C Chain C, The Crystal Structure Of A Protein Of Unknown Function
From Corynebacterium Glutamicum Atcc 13032
Length = 319
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 146 QEAEDAGEVLRYVGVVDAINKEGRVELRRYKKDHPFAQLSG 186
++ E++ E+ R VG A+ ++ EL RY+ HP A + G
Sbjct: 247 EQTEESSEIQRVVG---ALEQQYDSELERYRNRHPQAVMPG 284
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 19 ATVGAGLPIISTLRGLLETGDHILRIEGIF 48
T GA I+S L GLL GD ++ E F
Sbjct: 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFF 152
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 23 AGLPIISTLRGLLETGDHILRIEGIFSGT-------------LSYLFNSFVGTRSFSEVV 69
+G+ ST+ LL+ G H++ ++ ++ GT L + F +F +
Sbjct: 90 SGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAI 149
Query: 70 AEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLK 122
+ + E L D+A + ++AR+ GL + + ++ PL
Sbjct: 150 RADTKMVWIETPTNPMLKLVDIA-AIAVIARKHGLLTVVDNTFASPMLQRPLS 201
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 180 PFAQLSGSDNIIA-FTTKRYKEQPLIVRGPGAGAQVTAG-GIFSDILRLASYLGAPS 234
P G+D+I A T + P+IV+ GA AG G+ SD+ + A+ LGA S
Sbjct: 32 PAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAIS 88
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1GYN|A Chain A, Class Ii Fructose 1,6-Bisphosphate Aldolase With Cadmium
(Not Zinc) In The Active Site
pdb|1ZEN|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 180 PFAQLSGSDNIIA-FTTKRYKEQPLIVRGPGAGAQVTAG-GIFSDILRLASYLGAPS 234
P G+D+I A T + P+IV+ GA AG G+ SD+ + A+ LGA S
Sbjct: 32 PAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAIS 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,884,190
Number of Sequences: 62578
Number of extensions: 286057
Number of successful extensions: 817
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 29
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)