Query 035486
Match_columns 234
No_of_seqs 149 out of 1081
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02700 homoserine dehydrogen 100.0 3.7E-70 8E-75 505.8 26.3 226 1-229 148-375 (377)
2 COG0460 ThrA Homoserine dehydr 100.0 3.1E-70 6.7E-75 497.6 24.0 208 1-232 121-332 (333)
3 PRK09466 metL bifunctional asp 100.0 1.6E-67 3.5E-72 527.9 26.8 228 1-230 583-810 (810)
4 PRK09436 thrA bifunctional asp 100.0 6.7E-66 1.5E-70 517.7 26.8 230 1-232 589-818 (819)
5 PRK06813 homoserine dehydrogen 100.0 8.1E-66 1.8E-70 473.4 23.8 205 1-230 130-340 (346)
6 PRK08374 homoserine dehydrogen 100.0 1.7E-65 3.7E-70 470.0 24.5 206 1-233 130-335 (336)
7 PRK06349 homoserine dehydrogen 100.0 7.7E-65 1.7E-69 478.4 25.4 207 1-231 112-322 (426)
8 PRK06270 homoserine dehydrogen 100.0 6.7E-64 1.4E-68 460.0 24.5 206 1-232 133-340 (341)
9 PRK06392 homoserine dehydrogen 100.0 4.4E-64 9.5E-69 459.0 22.2 198 1-229 124-324 (326)
10 PF00742 Homoserine_dh: Homose 100.0 3.1E-61 6.7E-66 407.1 17.5 175 26-224 1-179 (179)
11 KOG0455 Homoserine dehydrogena 100.0 1.2E-58 2.6E-63 405.1 21.1 223 8-230 136-363 (364)
12 COG1102 Cmk Cytidylate kinase 50.8 5 0.00011 34.1 -0.1 36 53-95 32-69 (179)
13 PRK13303 L-aspartate dehydroge 50.6 14 0.0003 32.9 2.7 32 2-33 103-134 (265)
14 PF05402 PqqD: Coenzyme PQQ sy 48.5 20 0.00043 24.6 2.7 29 47-75 14-42 (68)
15 PRK07081 acyl carrier protein; 37.5 37 0.00079 24.8 2.8 61 66-131 6-73 (83)
16 COG2873 MET17 O-acetylhomoseri 36.2 30 0.00065 33.1 2.6 83 21-106 83-180 (426)
17 PHA00368 internal virion prote 32.1 15 0.00033 39.2 -0.0 17 46-62 985-1001(1315)
18 PHA01082 putative transcriptio 29.2 26 0.00056 28.3 0.8 38 51-95 19-56 (133)
19 TIGR01244 conserved hypothetic 28.4 52 0.0011 26.1 2.5 72 4-78 49-127 (135)
20 PF03123 CAT_RBD: CAT RNA bind 28.3 53 0.0012 22.8 2.2 22 188-211 9-30 (59)
21 KOG3974 Predicted sugar kinase 23.7 99 0.0022 28.3 3.6 45 189-233 90-134 (306)
22 PF00482 T2SF: Type II secreti 23.7 24 0.00052 25.9 -0.2 46 20-70 8-53 (124)
23 PRK02079 pyrroloquinoline quin 22.2 1.1E+02 0.0023 22.9 3.1 31 48-79 34-64 (88)
24 TIGR03859 PQQ_PqqD coenzyme PQ 21.3 1.1E+02 0.0025 22.1 3.0 26 48-73 29-54 (81)
25 PF03841 SelA: L-seryl-tRNA se 21.1 64 0.0014 30.6 2.0 55 2-56 160-231 (367)
26 PRK07328 histidinol-phosphatas 21.0 2.8E+02 0.006 24.4 6.0 70 2-79 180-254 (269)
27 PF08400 phage_tail_N: Prophag 20.7 71 0.0015 26.0 1.9 30 45-74 79-115 (134)
28 KOG1368 Threonine aldolase [Am 20.5 75 0.0016 29.8 2.3 95 2-103 178-292 (384)
29 PF08671 SinI: Anti-repressor 20.3 1.1E+02 0.0024 18.5 2.3 18 137-154 1-18 (30)
No 1
>PLN02700 homoserine dehydrogenase family protein
Probab=100.00 E-value=3.7e-70 Score=505.78 Aligned_cols=226 Identities=42% Similarity=0.694 Sum_probs=214.5
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|+++.++++ +|++|+||||||||+|||++|++++.+||+|++|+||||||+||||++|++|.+|+|||++||++|||||
T Consensus 148 ~~~~~~la~-~~~~~~yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEp 226 (377)
T PLN02700 148 LEDYDKLAA-HPRRIRHESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEP 226 (377)
T ss_pred HHHHHHHHH-cCCeEEEEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCC
Confidence 467888885 7999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCC-CCHHHHHh-cCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKAC-ASAEEFMK-QLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i-~~~~~~~~-~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
||++||+|+|+|+|++||||++|.+++++||+++|++|+.+... .+.++|++ .|+.+|+.|+++++.|+++|+++|||
T Consensus 227 DP~~Dl~G~D~ArKl~ILAr~~G~~~~~~dv~v~~l~p~~~~~~~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~V 306 (377)
T PLN02700 227 DPRDDLGGMDVARKALILARLLGKRINMDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYV 306 (377)
T ss_pred CCccccccHhHHHHHHHHHHHhCCCCChhhEEEEecccccccccccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEE
Confidence 99999999999999999999999999999999999999988632 24789999 89999999999999999999999999
Q ss_pred EEEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486 159 GVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 229 (234)
Q Consensus 159 ~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~ 229 (234)
|+++ +.+++|+|+.+|++|||++++|++|+|.|+|++|+.+|++++|||||+.+||+|||+||+++++.
T Consensus 307 a~~~--~~~~~V~~~~vp~~hpla~v~g~~N~v~~~t~~~~~~plvv~G~GAG~~~TA~~vl~Dll~i~~~ 375 (377)
T PLN02700 307 CVIE--GSSCQVGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDLQDL 375 (377)
T ss_pred EEEE--CCeEEEEEEEECCCCccccCCCCceEEEEEecccCCcceEEEcCCCChhHhHHHHHHHHHHHHHh
Confidence 9997 46799999999999999999999999999999998789999999999999999999999999973
No 2
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-70 Score=497.58 Aligned_cols=208 Identities=43% Similarity=0.700 Sum_probs=196.9
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCC-CCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGT-RSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g-~~f~eal~eAq~lGyaE 79 (234)
|+||+++|+++|+.|+||||||||+|||++||+.+ .||+|++|+|||||||||||++|+++ .||+|+|+|||++||||
T Consensus 121 ~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~~l-~g~~I~~i~GIlNGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE 199 (333)
T COG0460 121 YHELREAAEKNGVKLLYEATVGGGIPIIKLLRELL-AGDEILSIRGILNGTTNYILTRMEEGGLSFEDALAEAQELGYAE 199 (333)
T ss_pred HHHHHHHHHHhCCeEEEEeeeccCcchHHHHHhhc-ccCceEEEEEEEeccHHHHHHHHHccCCCHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999999999 69999999999999999999999875 59999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHH-HhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILAR-ESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
+||++||+|+|+|+|++|||| .||.+++++||++ +||+.++. ++++.|+++|+++|||
T Consensus 200 ~DPt~DleG~DaA~Kl~ILa~~~~g~~~~~~DV~v-----eGI~~i~~----------------~d~~~A~~~G~~iklv 258 (333)
T COG0460 200 ADPTDDLEGIDAARKLVILARLAFGTPETLDDVEV-----EGITPITP----------------EDIEFAKELGYVIKLV 258 (333)
T ss_pred CCCCCCccchHHHHHHHHHHHHHcCCCCChhheEE-----ecCcCCCH----------------HHHHHHHhCCcEEEEE
Confidence 999999999999999999999 6999999999999 88898882 4688899999999999
Q ss_pred EEEEeeCCe--eEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcCC
Q 035486 159 GVVDAINKE--GRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 232 (234)
Q Consensus 159 ~~~~~~~~~--~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~~ 232 (234)
|.+++.+.+ ++|+|++||++|||++|+|.+|++.|+|+.++ |++++|||||+.+||+||++||+++++..+.
T Consensus 259 g~~~~~~~~~~~~V~p~~vp~~~pLa~V~g~~Nav~i~td~~g--~l~~~G~GAG~~~TAsaV~sDli~i~~~~~~ 332 (333)
T COG0460 259 GIADKTGKGIEARVHPTLVPKDHPLASVNGVMNAVAIETDAYG--PLVLYGPGAGGEVTASAVLSDLLRIARLKVG 332 (333)
T ss_pred EEEEecCCceEEEEEeEEeCCCCcceecCCcceEEEEEeeccc--eEEEEeCCCCcchhHHHHHHHHHHHHHhccC
Confidence 999876554 89999999999999999999999999999994 9999999999999999999999999998654
No 3
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=1.6e-67 Score=527.89 Aligned_cols=228 Identities=49% Similarity=0.807 Sum_probs=220.8
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|+||+++|+++|+.|+||||||||+|||+++++++.+||+|++|+|||||||||||++|++|.+|+|||++||++||||+
T Consensus 583 ~~~l~~~a~~~~~~~~yEasV~~giPii~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~g~~f~eal~~Aq~~GyaE~ 662 (810)
T PRK09466 583 YRQIKDAFAKTGRHWLYNATVGAGLPINHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDGSVPFSELVDQAWQQGLTEP 662 (810)
T ss_pred HHHHHHHHHHcCCeEEEeceeeeccChHHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhcCCCHHHHHHHHHHcCCCCC
Confidence 78999999999999999999999999999999998789999999999999999999988899999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGV 160 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~ 160 (234)
||+.||+|+|+|+|++||||+||.+++++||++++++|++|++++ .+||++.++.+|+.|.++++.|+++|+++||||+
T Consensus 663 DP~~Dl~G~D~a~Kl~ILa~~~g~~~~~~dv~~~~l~p~~i~~i~-~~df~~~l~~~d~~~~~~i~~A~~~g~~lrlva~ 741 (810)
T PRK09466 663 DPRDDLSGRDVMRKLVILAREAGYEIEPDDVRVESLVPAHLEDGS-LDQFFENGDELDEQMLQRLEAAAEQGKVLRYVAR 741 (810)
T ss_pred CCccccccHHHHHHHHHHHHHhCCCCChheEEEeecCCcccccCC-HHHHhhhhhhhhhhHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999999999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred EEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486 161 VDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 161 ~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~ 230 (234)
+++ +++++|+|++||++|||++++|++|+|.|+|++|+++|++++|||||+.+||+||++||+++++.+
T Consensus 742 ~~~-~~~~~V~p~~v~~~~pla~v~g~~N~v~~~t~~~~~~~l~~~G~GAG~~~TA~aVlsDll~i~~~~ 810 (810)
T PRK09466 742 FDA-NGKARVGVEAVRPDHPLANLLPCDNVFAIESRWYRDNPLVIRGPGAGREVTAGAIQSDLNRLAQLL 810 (810)
T ss_pred EEe-CCEEEEEEEEECCCCcccccCCCceEEEEEeccccCCceEEEcCCCChHHhHHHHHHHHHHHHhhC
Confidence 987 558999999999999999999999999999999977799999999999999999999999999864
No 4
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=6.7e-66 Score=517.73 Aligned_cols=230 Identities=49% Similarity=0.847 Sum_probs=221.6
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|+||+++|+++|+.|+||||||||+|||+++++++++||+|++|+|||||||||||++|++|.+|+|||++||++||||+
T Consensus 589 ~~el~~~a~~~~~~~~yeatV~~giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~g~~f~~al~~Aq~~GyaE~ 668 (819)
T PRK09436 589 YHQLREAARKSRRKFLYETNVGAGLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDEGMSFSEATRLAKEKGYTEP 668 (819)
T ss_pred HHHHHHHHHHcCCeEEEeeeeccccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhcCCCHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGV 160 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~ 160 (234)
||+.||+|+|+|+|++||||++|.+++++||++++++|+++....+.++|+..+..+|..+.++++.|+++|+++||||+
T Consensus 669 DP~~Dl~G~D~a~Kl~ILa~~~g~~~~~~dv~~~gi~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~g~~lr~va~ 748 (819)
T PRK09436 669 DPRDDLSGMDVARKLLILAREAGYELELEDIEVESVLPEEFDASGSVDEFMARLPELDAEFAARVAKARAEGKVLRYVGQ 748 (819)
T ss_pred CCcccccchHHHHHHHHHHHHhCCCCChhheeecccCchhhcccccHHHHHhhchhhhhHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999999999999999999999999988776568999999999999999999999999999999999
Q ss_pred EEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcCC
Q 035486 161 VDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 232 (234)
Q Consensus 161 ~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~~ 232 (234)
++ +++++|+|+.+|++||||+|+|++|+|.|+|++|+..|++++|||||+.+||+|||+||+++++++++
T Consensus 749 ~~--~~~~~v~~~~v~~~~~la~v~g~~n~v~~~t~~~~~~~~~~~G~gAG~~~TA~av~~Dll~i~~~~~~ 818 (819)
T PRK09436 749 IE--DGKCRVGIAEVDANHPLYKVKGGENALAFYTRYYQPIPLVLRGYGAGNEVTAAGVFADLLRTLSWKLG 818 (819)
T ss_pred Ee--CCeEEEEEEEECCCCccccCCCCceEEEEEecccCceeeEEEcCCCChHHhHHHHHHHHHHHHHhhcC
Confidence 94 56899999999999999999999999999999998778999999999999999999999999998876
No 5
>PRK06813 homoserine dehydrogenase; Validated
Probab=100.00 E-value=8.1e-66 Score=473.42 Aligned_cols=205 Identities=25% Similarity=0.419 Sum_probs=192.1
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccC-CCCCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV-GTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~-~g~~f~eal~eAq~lGyaE 79 (234)
|+||+++|+++|+.|+||||||||+|||++++..+ +||+|++|+|||||||||||++|. +|.+|+|||++||++||||
T Consensus 130 ~~eL~~lA~~~g~~~~yEasVggGiPiI~~l~~~~-~g~~I~~i~GIlNGT~NyIL~~m~~~g~~f~eal~~Aq~lGyaE 208 (346)
T PRK06813 130 WREINEAAKIANVRIRYSGATAAALPTLDIGQFSL-AGCHIEKIEGILNGTTNYILTKMNEEDITFEEALKEAQSKGIAE 208 (346)
T ss_pred HHHHHHHHHHcCCeEEEeeeeeeccchHHHHhhhc-ccCcEEEEEEEEechHHHHHhhhhhcCCCHHHHHHHHHHcCCCC
Confidence 57999999999999999999999999999998777 899999999999999999999996 7999999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHH-HhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILAR-ESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
+||++||+|+|+|+|++|||+ +||.+++++||++ +||++++ . ++++.|+++|+++|||
T Consensus 209 ~DP~~Dl~G~D~A~Kl~ILA~~~~G~~i~~~dv~~-----eGI~~i~-~---------------~~i~~A~~~g~~iklv 267 (346)
T PRK06813 209 TNPILDVSGSDSACKLLLLTNSLMGTENKLTDIHI-----KGIEHVT-K---------------QQIRNAKEQNKIIKLI 267 (346)
T ss_pred CCCccccccHHHHHHHHHHHHHHcCCCCChHheEe-----eccccCC-H---------------HHHHHHHHCCCEEEEE
Confidence 999999999999999999996 8999999999999 8888887 2 6789999999999999
Q ss_pred EEEEeeC-Ce--eEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCC-hhHHHHHHHHHHHHHHHhc
Q 035486 159 GVVDAIN-KE--GRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG-AQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 159 ~~~~~~~-~~--~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG-~~~TA~aVl~Dll~i~~~~ 230 (234)
|++++.+ ++ ++|+|+++|++|||++|+|++|+|.|+|++|+ +++++| ||| +.|||+||++||+++++..
T Consensus 268 a~~~~~~~~~~~~~V~p~~vp~~~pla~v~g~~N~v~~~td~~g--~~~~~G-gag~~~~TAsavl~Dii~i~~~~ 340 (346)
T PRK06813 268 ASAYKDNEGNVNLNVEPYKIEKNHPLANVNGTEKGITFFTDTMG--QVTTIG-GASNPRGAAAAALKDIINLYRKD 340 (346)
T ss_pred EEEEEcCCCeEEEEEEEEEECCCCccccCCCCceEEEEEeeecC--cEEEEc-CCCCCcccHHHHHHHHHHHHhhh
Confidence 9997654 44 48999999999999999999999999999996 799999 666 6899999999999999864
No 6
>PRK08374 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-65 Score=469.98 Aligned_cols=206 Identities=29% Similarity=0.486 Sum_probs=195.7
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|++|+++|+++|+.|+||++|++|+|||+++++++ +||+|++|+|||||||||||++|++|.+|+|||++||++||||+
T Consensus 130 ~~el~~la~~~~~~~~~ea~v~~GiPii~~l~~~l-~g~~i~~i~GIlnGT~nyIl~~m~~g~~f~eal~eAq~~GyaE~ 208 (336)
T PRK08374 130 YDELLDLANERNLPYLFEATVMAGTPIIGLLRENL-LGDTVKRIEAVVNATTTFILTRMEQGKTFEEALKEAQTLGIAER 208 (336)
T ss_pred HHHHHHHHHHcCCeEEEeccccccCCchHHHHhhc-cccceEEEEEEEechHHHHHHHhhCCCCHHHHHHHHHHcCCCCC
Confidence 67999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGV 160 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~ 160 (234)
||++||+|+|+|+|++||||+.+.+++++||++ +||++++ . ++++.|+++|+++||||+
T Consensus 209 DP~~Dv~G~D~a~Kl~ILa~~~~~~~~~~dv~~-----~gi~~i~-~---------------~~i~~a~~~g~~lklv~~ 267 (336)
T PRK08374 209 DPSKDIDGIDAGYKATILHWVAFPPITFEEVGI-----RGIKDVT-E---------------GEIERAKAKGRNVRLVAT 267 (336)
T ss_pred CCcccccCHHHHHHHHHHHHHhCCCCChhheee-----eccccCC-H---------------HHHHHHHHCCCEEEEEEE
Confidence 999999999999999999996449999999999 8888887 2 678999999999999999
Q ss_pred EEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcCCC
Q 035486 161 VDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAP 233 (234)
Q Consensus 161 ~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~~~ 233 (234)
++. ++++|+|+++|++|||+ ++|.+|+|.|+|++|+ +++++|+|||+.+||+||++||++++++.-.|
T Consensus 268 ~~~--~~~~V~p~~v~~~~pl~-v~g~~n~v~~~t~~~g--~~~~~G~GAG~~~TA~avl~Dll~~~~~~~~~ 335 (336)
T PRK08374 268 VEE--GRISVKPKKLPENSPLA-VEGVENAAVIKTDLLG--ELVLKGPGAGGKETASGVVTDIIKAALKFPKY 335 (336)
T ss_pred EEC--CeEEEEEEEECCCCCee-eCCCceEEEEEccccC--cEEEEeCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 863 57999999999999999 9999999999999996 79999999999999999999999999987665
No 7
>PRK06349 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-65 Score=478.38 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=196.2
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccC-CCCCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV-GTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~-~g~~f~eal~eAq~lGyaE 79 (234)
|+||.++|+++|+.|+|||+|+||+|+|+++++++ .+++|.+|+|||||||||||++|+ +|.+|+|||++||++||||
T Consensus 112 ~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l-~~~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~GyaE 190 (426)
T PRK06349 112 GAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL-AANRITRVMGIVNGTTNYILTKMTEEGLSFEDALKEAQRLGYAE 190 (426)
T ss_pred HHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc-ccCCeeEEEEEEeCcHHHHHhhhhhcCCCHHHHHHHHHHcCCCC
Confidence 47999999999999999999999999999999998 799999999999999999999996 7999999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHH-HhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILAR-ESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
+||++||+|+|+|+|++|||+ +||.+++++||++ +||++++. .+++.|+++|+++|||
T Consensus 191 ~DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~~i~~-----~gi~~i~~----------------~di~~a~~~g~~iklv 249 (426)
T PRK06349 191 ADPTFDVEGIDAAHKLAILASLAFGTRVDFDDVYV-----EGISKITA----------------EDIAYAKELGYRIKLL 249 (426)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCChhheee-----eCcccCCH----------------HHHHHHHHCCCeEEEE
Confidence 999999999999999999999 4899999999999 89999982 5689999999999999
Q ss_pred EEEEeeCC--eeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcC
Q 035486 159 GVVDAINK--EGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG 231 (234)
Q Consensus 159 ~~~~~~~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~ 231 (234)
|++++.++ +++|+|+++|++|||++++|++|+|.|+|+.++ |++|+|||||+.|||+||++||+++++.+.
T Consensus 250 ~~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~~~~~~~g--~~~~~G~GAG~~~Ta~av~~Di~~~~~~~~ 322 (426)
T PRK06349 250 GIAERTEEGIELRVHPTLIPKSHPLANVNGVMNAVFVEGDAVG--ETMFYGPGAGGLPTASAVVADLVDIARNLV 322 (426)
T ss_pred EEEEEcCCcEEEEEEEEEECCCCcceeCCCCceEEEEEecccc--cEEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 99986544 478999999999999999999999999999995 999999999999999999999999999754
No 8
>PRK06270 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-64 Score=459.99 Aligned_cols=206 Identities=35% Similarity=0.543 Sum_probs=195.1
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhcc-CCCCCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSF-VGTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m-~~g~~f~eal~eAq~lGyaE 79 (234)
|++|.++|+++|+.|+|||+|++|+|+|+++++++ .+++|.+|+|||||||||||++| ++|.+|+|||++||++||||
T Consensus 133 ~~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l-~g~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G~aE 211 (341)
T PRK06270 133 YKELKELAKKNGVRFRYEATVGGAMPIINLAKETL-AGNDIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELGYAE 211 (341)
T ss_pred HHHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhc-ccCceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcCCCC
Confidence 57899999999999999999999999999999998 79999999999999999999999 68999999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHHH-hCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILARE-SGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
+||++||+|+|+|+|++||||+ ||.+++++||++ +||++++ .++++.|+++|+++|||
T Consensus 212 ~DP~~D~~G~D~a~Kl~Ila~~~~g~~~~~~~v~~-----~gi~~~~----------------~~~~~~a~~~g~~~r~v 270 (341)
T PRK06270 212 ADPTYDVEGIDAALKVVILANSILGADLTIKDVEV-----EGITKIT----------------PEAIELAAKEGYRIKLI 270 (341)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCCCCHHHeee-----cCcccCC----------------HHHHHHHHHCCCEEEEE
Confidence 9999999999999999999995 899999999999 8888887 25789999999999999
Q ss_pred EEEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcCC
Q 035486 159 GVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 232 (234)
Q Consensus 159 ~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~~ 232 (234)
|+++..++ ++|+|+++|++|||+ ++|++|+|.|+|++|+ |++++|||||+.+||+||++||+++++..+.
T Consensus 271 ~~~~~~~~-~~V~~~~~~~~~~l~-~~g~~n~~~~~~~~~~--~~~~~G~gaG~~~Ta~av~~Dl~~i~~~~~~ 340 (341)
T PRK06270 271 GEVSREKD-LSVSPRLVPLDHPLA-VSGTLNAATFETDLAG--DVTVVGRGAGSIETASAILSDLIAIHDRYGK 340 (341)
T ss_pred EEEEcCCC-eEEEEEEECCCCCcE-ECCCceEEEEEecccC--CEEEEeCCCChHHHHHHHHHHHHHHHHhhcC
Confidence 99976433 999999999999999 9999999999999996 8999999999999999999999999998764
No 9
>PRK06392 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-64 Score=459.00 Aligned_cols=198 Identities=26% Similarity=0.334 Sum_probs=187.1
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|++|+++|+++|++|+||||||||+|||++++..+ +||+|++|+|||||||||||++|++|.+|+|||++||++||||+
T Consensus 124 ~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~~~~~-~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~lG~aE~ 202 (326)
T PRK06392 124 WHDIMDSASKNRRIIRYEATVAGGVPLFSLRDYST-LPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKMGIAET 202 (326)
T ss_pred HHHHHHHHHHcCCeEEEeeeeeeccchhhhhhhhc-ccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999999999998877 89999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHH-hCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARE-SGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVG 159 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~ 159 (234)
||+.||+|+|+|+|++||||+ ||.+++++||++ +||++++. ++|+++|+|+
T Consensus 203 DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~dv~~-----~gi~~i~~-----------------------~~~~~~kli~ 254 (326)
T PRK06392 203 NYSDDLMGLDAARKSVILANHLFGKDYTLRDVTY-----DGIENIDR-----------------------SSMDNERLVT 254 (326)
T ss_pred CCccccCCHHHHHHHHHHHHHHcCCCCCHHHeee-----cCccccCH-----------------------hhCCceEEEE
Confidence 999999999999999999995 899999999999 99999881 3478899999
Q ss_pred EEEeeCCe--eEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486 160 VVDAINKE--GRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 229 (234)
Q Consensus 160 ~~~~~~~~--~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~ 229 (234)
++.+.+++ ++|+|+.+|++|||++++|.+|++.|+|+.++ +++++|||||+.+||+||++||++++..
T Consensus 255 ~~~~~~~~~~~~V~p~~~~~~~pla~v~g~~n~~~~~td~~g--~~~~~G~gaG~~~Ta~a~l~Dl~~~~~~ 324 (326)
T PRK06392 255 EVAMINGGPHAESRIRSLSRNDFLGMIGPLSLGYQMETDING--TINVSDNYDGPYETAGAVVNDVMLLSKY 324 (326)
T ss_pred EEEEeCCcEEEEEEEEEcCCCCcchhcCCCceEEEEEecccC--cEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 99875543 79999999999999999999999999999986 7999999999999999999999999875
No 10
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the catalytic domain of homoserine dehydrogenase.; GO: 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2EJW_E 3ING_A 3JSA_A 3C8M_A 1TVE_A 1EBU_D 1EBF_B 1Q7G_A 3DO5_A 3MTJ_A.
Probab=100.00 E-value=3.1e-61 Score=407.07 Aligned_cols=175 Identities=45% Similarity=0.725 Sum_probs=159.3
Q ss_pred chHHHHHHhhhcCCceEEEEEEecccHHHHHhccCC-CCCHHHHHHHHHHcCCCCCCcCCCCCChhhhHHHHHHHHH-hC
Q 035486 26 PIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVG-TRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARE-SG 103 (234)
Q Consensus 26 Pii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~-g~~f~eal~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~-~g 103 (234)
|||+++++++ +||+|++|+|||||||||||++|++ |.+|+|||++||++||||+||++||+|+|+++|++|||+. ||
T Consensus 1 Pii~~l~~~~-~~~~I~~i~GIlNGT~NyIL~~m~~~g~~f~~al~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~~~g 79 (179)
T PF00742_consen 1 PIINTLRNLL-AGDKIKRIEGILNGTTNYILTRMEEEGLSFSEALKEAQELGYAEADPSDDVDGWDAARKLVILARLAFG 79 (179)
T ss_dssp SHHHHHHHCC-TTSCEEEEEEE--HHHHHHHHHHHTHT--HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred CchhHHhhhc-ccCceEEEEEEEcCHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCcccCCCCHhHHHHHHHHhHHHHC
Confidence 9999999997 8999999999999999999999987 9999999999999999999999999999999999999995 99
Q ss_pred CCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eeEEEEEEecCCCCc
Q 035486 104 LKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKKDHPF 181 (234)
Q Consensus 104 ~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~~~~~~~--~~~V~p~~v~~~~pl 181 (234)
.+++++||++ +||++++. ++++.|+++|+++||||.+++.++ +++|+|+++|++|||
T Consensus 80 ~~~~~~dv~~-----~gI~~i~~----------------~~i~~a~~~g~~~klva~~~~~~~~~~~~V~p~~v~~~~pl 138 (179)
T PF00742_consen 80 VDLDPEDVPV-----EGIRDITP----------------EDIAYAKKEGKVLKLVASADRENGGIQASVKPELVPKDHPL 138 (179)
T ss_dssp TT-SGGGSEE-------STTGGH----------------HHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSGG
T ss_pred CCCCccceee-----cCCCCcCH----------------HHHHHHHHCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCcc
Confidence 9999999999 89999882 578999999999999999998554 479999999999999
Q ss_pred ccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHH
Q 035486 182 AQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDIL 224 (234)
Q Consensus 182 a~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll 224 (234)
++++|++|+|.|+|+.++ +++++|||||+.+||+||++||+
T Consensus 139 a~v~g~~N~v~i~t~~~g--~~~~~G~GAG~~~TA~avl~Dll 179 (179)
T PF00742_consen 139 ASVKGSENAVEIETDYYG--PLVLYGPGAGPLPTASAVLSDLL 179 (179)
T ss_dssp GGSSTTEEEEEEEESSSE--EEEEEECSSSHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEEccccc--cEEEEcCCCChHHHHHHHHHhhC
Confidence 999999999999999984 99999999999999999999996
No 11
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-58 Score=405.11 Aligned_cols=223 Identities=54% Similarity=0.900 Sum_probs=214.3
Q ss_pred HHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCC----CCHHHHHHHHHHcCCCCCCcC
Q 035486 8 QRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGT----RSFSEVVAEAKEAGYTEPDPR 83 (234)
Q Consensus 8 a~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g----~~f~eal~eAq~lGyaE~DP~ 83 (234)
+.+.+..++.|||||+|+|||.+|++.+.+||+|.+|+|||+||+.|||+.+++| .+|+++++.|+++||+||||+
T Consensus 136 ~~~s~~fi~HEatVGAGLPiIs~L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPR 215 (364)
T KOG0455|consen 136 HSKSPRFIRHEATVGAGLPIISSLNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPR 215 (364)
T ss_pred cCCCCceEEeeccccCCchhHHHHHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCcc
Confidence 4457999999999999999999999999999999999999999999999999864 579999999999999999999
Q ss_pred CCCCChhhhHHHHHHHHHhCCCCC-CCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEEEEE
Q 035486 84 DDLSGTDVARKVIILARESGLKLE-LSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVGVVD 162 (234)
Q Consensus 84 ~Dv~G~Daa~Kl~ILa~~~g~~i~-~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~~~~ 162 (234)
+|++|+|+|||..||+|..|++++ ++.++++||+|+.+..+.+.|||++.|+.+|..++++.++|..+|+++||||.++
T Consensus 216 DDLnGmDVARKvtIl~Ri~Gv~ves~~Sfpv~SLiPepl~s~~sadeFL~gl~~~D~~~~~~~keA~~egkVlRfvg~~d 295 (364)
T KOG0455|consen 216 DDLNGMDVARKVTILARILGVRVESMDSFPVESLIPEPLPSLMSADEFLHGLVKLDQNIEERVKEASSEGKVLRFVGVID 295 (364)
T ss_pred cccccchhhhhhhhhhhhccceeecccccchhhcCCccccccccHHHHHhhhhhhhhhHHHHHHHhhccCcEEEEEEEEe
Confidence 999999999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486 163 AINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 163 ~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~ 230 (234)
..++...|+.+.++++|||++++|++|.|.|+|++|..+|++++|.|||...||++|+.|+++|+...
T Consensus 296 va~ksv~Vgiekyd~shPfa~L~gSDNiisi~tkrY~t~PlViqGAGAGaavTAAGVLgDiIki~~~~ 363 (364)
T KOG0455|consen 296 VANKSVQVGIEKYDKSHPFARLRGSDNIISIYTKRYKTQPLVIQGAGAGAAVTAAGVLGDIIKIQDLF 363 (364)
T ss_pred cccceEEeeeEeccccCchhhhcCCCceEEEEeeecccCceEEEccCCcchhhhhHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999988899999999999999999999999998753
No 12
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=50.76 E-value=5 Score=34.10 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=27.9
Q ss_pred HHHHhccC--CCCCHHHHHHHHHHcCCCCCCcCCCCCChhhhHHH
Q 035486 53 SYLFNSFV--GTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKV 95 (234)
Q Consensus 53 NyIL~~m~--~g~~f~eal~eAq~lGyaE~DP~~Dv~G~Daa~Kl 95 (234)
.+||-+|. .|+|++|--+ |||.||..|.. .|-..|-
T Consensus 32 G~iFR~~A~e~gmsl~ef~~------~AE~~p~iD~~-iD~rq~e 69 (179)
T COG1102 32 GTIFREMARERGMSLEEFSR------YAEEDPEIDKE-IDRRQKE 69 (179)
T ss_pred cHHHHHHHHHcCCCHHHHHH------HHhcCchhhHH-HHHHHHH
Confidence 36999995 4999999876 89999999975 4554444
No 13
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=50.57 E-value=14 Score=32.90 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHH
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRG 33 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~ 33 (234)
++|.++|+++|+.+++.+...+|+++++..+.
T Consensus 103 ~~L~~~A~~~g~~l~v~sga~gg~d~l~~~~~ 134 (265)
T PRK13303 103 ERLEQAAEAGGARLHLLSGAIGGIDALAAAKE 134 (265)
T ss_pred HHHHHHHHHCCCEEEEeChHhhCHHHHHHHHh
Confidence 56889999999999999999999999998765
No 14
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=48.50 E-value=20 Score=24.63 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=20.2
Q ss_pred EecccHHHHHhccCCCCCHHHHHHHHHHc
Q 035486 47 IFSGTLSYLFNSFVGTRSFSEVVAEAKEA 75 (234)
Q Consensus 47 IlNGT~NyIL~~m~~g~~f~eal~eAq~l 75 (234)
.||+|..+|+..++.+.|.+++++.-.+.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 79999999999998889999999876654
No 15
>PRK07081 acyl carrier protein; Provisional
Probab=37.49 E-value=37 Score=24.85 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCcCCCC----CChhhhHHHHHHHH---HhCCCCCCCCeeeccCCCccccCCCCHHHHH
Q 035486 66 SEVVAEAKEAGYTEPDPRDDL----SGTDVARKVIILAR---ESGLKLELSDLPVRSLVPEPLKACASAEEFM 131 (234)
Q Consensus 66 ~eal~eAq~lGyaE~DP~~Dv----~G~Daa~Kl~ILa~---~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~ 131 (234)
.+.|.+.-..+........|. -|+|+..=+-++.. .||+.++.+++.. +.+..+.+..+++
T Consensus 6 ~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~-----~~~~tv~~l~~~V 73 (83)
T PRK07081 6 RTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNR-----KLFASIDALAGAV 73 (83)
T ss_pred HHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCH-----HHhccHHHHHHHH
Confidence 445555444444322222222 28999998888886 4999998888765 4445544433333
No 16
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=36.21 E-value=30 Score=33.15 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=58.8
Q ss_pred cccccc-hHHHHHHhhhcCCceEEEEEEecccHHHHHhccCC-C-----------CCHHHHHHHHHHcCCCC--CCcCCC
Q 035486 21 VGAGLP-IISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVG-T-----------RSFSEVVAEAKEAGYTE--PDPRDD 85 (234)
Q Consensus 21 VgggiP-ii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~-g-----------~~f~eal~eAq~lGyaE--~DP~~D 85 (234)
|+.|.- +.-.+.++..+||+|-+-..++-||.|.+-..+.. | .+|++++.+--++=|.| .||..|
T Consensus 83 ~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~ 162 (426)
T COG2873 83 VASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLD 162 (426)
T ss_pred hccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCcc
Confidence 334433 33445667779999999999999999987665322 2 45777887778888999 899999
Q ss_pred CCChhhhHHHHHHHHHhCCCC
Q 035486 86 LSGTDVARKVIILARESGLKL 106 (234)
Q Consensus 86 v~G~Daa~Kl~ILa~~~g~~i 106 (234)
|--+.+..+ +|+.-|+++
T Consensus 163 v~Die~ia~---iAh~~gvpl 180 (426)
T COG2873 163 VLDIEAIAE---IAHRHGVPL 180 (426)
T ss_pred ccCHHHHHH---HHHHcCCcE
Confidence 987775554 444445443
No 17
>PHA00368 internal virion protein D
Probab=32.09 E-value=15 Score=39.15 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=13.3
Q ss_pred EEecccHHHHHhccCCC
Q 035486 46 GIFSGTLSYLFNSFVGT 62 (234)
Q Consensus 46 GIlNGT~NyIL~~m~~g 62 (234)
=+||||+||||+.=.+|
T Consensus 985 k~ln~ttNYilDa~RqG 1001 (1315)
T PHA00368 985 KLLNGTTNYILDAARQG 1001 (1315)
T ss_pred HHhccchHHHHHHHhhh
Confidence 35999999999865544
No 18
>PHA01082 putative transcription regulator
Probab=29.18 E-value=26 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred cHHHHHhccCCCCCHHHHHHHHHHcCCCCCCcCCCCCChhhhHHH
Q 035486 51 TLSYLFNSFVGTRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKV 95 (234)
Q Consensus 51 T~NyIL~~m~~g~~f~eal~eAq~lGyaE~DP~~Dv~G~Daa~Kl 95 (234)
|-||||-+++-|+|.+|+-+-.-+ ..-+|..||.-.++
T Consensus 19 tkNyiFRefeCgLsveeaa~LCfK-------sVrtVk~WD~G~~I 56 (133)
T PHA01082 19 TKNFVFREFECGLSVEEAAKLCFK-------TVSEVKQWDAGEKI 56 (133)
T ss_pred hcceehhhhccCccHHHHHHHHHH-------hHHHHhhccCCCcC
Confidence 679999999999999998776654 33456667765543
No 19
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=28.38 E-value=52 Score=26.10 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHHHHhcCCeEEEeeecccccc---hHHHHHHhhhcC-CceEEEEEEeccc---HHHHHhccCCCCCHHHHHHHHHHcC
Q 035486 4 LRSLQRKSYTHYFYEATVGAGLP---IISTLRGLLETG-DHILRIEGIFSGT---LSYLFNSFVGTRSFSEVVAEAKEAG 76 (234)
Q Consensus 4 L~~la~~~g~~~~yEasVgggiP---ii~~l~~~~~~g-d~I~~i~GIlNGT---~NyIL~~m~~g~~f~eal~eAq~lG 76 (234)
+.+++...|+.+.+=- |..+-+ -+..+++.+... ..|.--. =+|+ .=|-|.....|.+.++++++|++.|
T Consensus 49 ~~~~a~~~gl~y~~iP-v~~~~~~~~~v~~f~~~~~~~~~pvL~HC--~sG~Rt~~l~al~~~~~g~~~~~i~~~~~~~G 125 (135)
T TIGR01244 49 IKAAAEAAGVTYHHQP-VTAGDITPDDVETFRAAIGAAEGPVLAYC--RSGTRSSLLWGFRQAAEGVPVEEIVRRAQAAG 125 (135)
T ss_pred HHHHHHHCCCeEEEee-cCCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4566777888885543 333322 344444444322 2344332 3333 2223444457999999999999999
Q ss_pred CC
Q 035486 77 YT 78 (234)
Q Consensus 77 ya 78 (234)
|-
T Consensus 126 ~~ 127 (135)
T TIGR01244 126 YD 127 (135)
T ss_pred CC
Confidence 85
No 20
>PF03123 CAT_RBD: CAT RNA binding domain; InterPro: IPR004341 The CAT RNA-binding domain is found at the amino terminus of a family of transcriptional antiterminator proteins, the Co-AntiTerminator (CAT) domain. This domain forms a dimer in the crystal structure []. Transcriptional antiterminators of the BglG/SacY family are regulatory proteins that mediate the induction of sugar metabolizing operons in Gram-positive and Gram-negative bacteria. Upon activation, these proteins bind to specific targets in nascent mRNAs, thereby preventing abortive dissociation of the RNA polymerase from the DNA template [].; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1AUU_B 1TLV_A 1L1C_A 1H99_A 3RIO_A.
Probab=28.34 E-value=53 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=14.8
Q ss_pred ceEEEEEecccCCcCeEEEcCCCC
Q 035486 188 DNIIAFTTKRYKEQPLIVRGPGAG 211 (234)
Q Consensus 188 ~N~v~i~t~~~~~~~l~~~G~GAG 211 (234)
.|+|... +..+ .++++.|+|-|
T Consensus 9 NNvvl~~-~~~~-~E~Iv~GkGIG 30 (59)
T PF03123_consen 9 NNVVLAK-DDNG-QEVIVMGKGIG 30 (59)
T ss_dssp TTEEEEE--CCS-SEEEEE-TTSS
T ss_pred CeEEEEE-eCCC-CEEEEEeecce
Confidence 5777766 4444 48999999987
No 21
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=23.74 E-value=99 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=32.7
Q ss_pred eEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhcCCC
Q 035486 189 NIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAP 233 (234)
Q Consensus 189 N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~~~~ 233 (234)
|++.+--.++..-..++.|||-|+.|.--=.+++|++.++..+.|
T Consensus 90 ~av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP 134 (306)
T KOG3974|consen 90 NAVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVP 134 (306)
T ss_pred chHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 344333333433356899999999999999999999999876654
No 22
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=23.69 E-value=24 Score=25.88 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=28.9
Q ss_pred ecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHH
Q 035486 20 TVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVA 70 (234)
Q Consensus 20 sVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~ 70 (234)
.+.+|+|+.+.++..... .+ .|-++--...+..+|+.|.+++++++
T Consensus 8 ll~sG~~l~~al~~~~~~-~~----~~~l~~~~~~~~~~l~~G~~~~~al~ 53 (124)
T PF00482_consen 8 LLKSGIPLSEALEILAEE-SD----SGPLREELQKIRRRLRNGGSLEEALE 53 (124)
T ss_dssp HHHCT--HHHHHHHHCCC--S----SHHHHHHHHHHHHHHHTT--HHHHHC
T ss_pred HHHcCCCHHHHHHHHHhH-cC----CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356899999999976422 22 44455555666777788999999997
No 23
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=22.19 E-value=1.1e+02 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=24.4
Q ss_pred ecccHHHHHhccCCCCCHHHHHHHHHHcCCCC
Q 035486 48 FSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 48 lNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE 79 (234)
||.|..||+.+++...|.++.++.=+ .-|.|
T Consensus 34 Lnetg~~Iw~~~DG~~tv~eIi~~L~-~~y~~ 64 (88)
T PRK02079 34 LNESAGEILGLIDGKRTVAAIIAELQ-QQFPD 64 (88)
T ss_pred echHHHHHHHHccCCCCHHHHHHHHH-HHccc
Confidence 89999999999998889998885433 24533
No 24
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=21.34 E-value=1.1e+02 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.6
Q ss_pred ecccHHHHHhccCCCCCHHHHHHHHH
Q 035486 48 FSGTLSYLFNSFVGTRSFSEVVAEAK 73 (234)
Q Consensus 48 lNGT~NyIL~~m~~g~~f~eal~eAq 73 (234)
||.|..+|...++...|.++...+-.
T Consensus 29 Ln~~g~~Iw~lldg~~tv~eI~~~L~ 54 (81)
T TIGR03859 29 LNDSAGEILELCDGKRSLAEIIQELA 54 (81)
T ss_pred eChHHHHHHHHccCCCcHHHHHHHHH
Confidence 99999999999998889988875543
No 25
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=21.13 E-value=64 Score=30.60 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=32.0
Q ss_pred hHHHHHHHhcCCeEEEeeeccc-------ccchHHHHHHhhhcCCceEEEE----------EEecccHHHHH
Q 035486 2 LKLRSLQRKSYTHYFYEATVGA-------GLPIISTLRGLLETGDHILRIE----------GIFSGTLSYLF 56 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgg-------giPii~~l~~~~~~gd~I~~i~----------GIlNGT~NyIL 56 (234)
+||.++|+++++.+.+.+.-|. |+|=-.++++.+..|..+-.++ ||+=|---||-
T Consensus 160 ~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~ 231 (367)
T PF03841_consen 160 EELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIE 231 (367)
T ss_dssp -HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHH
T ss_pred HHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHH
Confidence 6899999999999999987754 6666788888888888888776 57777766663
No 26
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.96 E-value=2.8e+02 Score=24.38 Aligned_cols=70 Identities=23% Similarity=0.184 Sum_probs=44.1
Q ss_pred hHHHHHHHhcCCeEEEeee-----cccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcC
Q 035486 2 LKLRSLQRKSYTHYFYEAT-----VGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAG 76 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEas-----VgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lG 76 (234)
+++.+.++++|+.+-..++ ++.-.|.-..++.....|.+| +++.=+...-+ =|..|+++++-+++.|
T Consensus 180 ~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~i-----tigSDAH~~~~---vg~~~~~a~~~l~~~G 251 (269)
T PRK07328 180 EEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPV-----VLGSDAHRPEE---VGFGFAEALALLKEVG 251 (269)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCE-----EEeCCCCCHHH---HhccHHHHHHHHHHcC
Confidence 6788889999999888874 233455555666555445433 23332211111 0678999999999999
Q ss_pred CCC
Q 035486 77 YTE 79 (234)
Q Consensus 77 yaE 79 (234)
|.+
T Consensus 252 ~~~ 254 (269)
T PRK07328 252 YTE 254 (269)
T ss_pred CcE
Confidence 865
No 27
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=20.67 E-value=71 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEecccHHHHHhccCCC-------CCHHHHHHHHHH
Q 035486 45 EGIFSGTLSYLFNSFVGT-------RSFSEVVAEAKE 74 (234)
Q Consensus 45 ~GIlNGT~NyIL~~m~~g-------~~f~eal~eAq~ 74 (234)
+--..||+|..|..+.++ +-|++...+||+
T Consensus 79 ~dS~pGTLN~fL~~~~e~dl~Pevlk~fe~m~~~a~~ 115 (134)
T PF08400_consen 79 EDSKPGTLNDFLTAPDEDDLRPEVLKRFEEMVAQAAR 115 (134)
T ss_pred cCCCCCcHHHHhhccccccCCHHHHHHHHHHHHHHHH
Confidence 344679999999887653 347777777774
No 28
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=20.53 E-value=75 Score=29.79 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCCeEE------EeeecccccchHHHHHHh------hh--cCCceEEEEEEecccHHHHHhc--cC----C
Q 035486 2 LKLRSLQRKSYTHYF------YEATVGAGLPIISTLRGL------LE--TGDHILRIEGIFSGTLSYLFNS--FV----G 61 (234)
Q Consensus 2 ~eL~~la~~~g~~~~------yEasVgggiPii~~l~~~------~~--~gd~I~~i~GIlNGT~NyIL~~--m~----~ 61 (234)
.++.++|+++|+++. |.|+|+.|+||=+..+.+ +. .|..| --|+=|.-.||-.. +. .
T Consensus 178 ~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG~k~FI~kA~~~RKalGG 254 (384)
T KOG1368|consen 178 DRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVGSKDFIDKARHFRKALGG 254 (384)
T ss_pred HHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEccHHHHHHHHHHHHHhcC
Confidence 367889999999995 889999999997665532 11 12333 34677888898653 21 2
Q ss_pred CCCHHHHHHHHHHcCCCCCCcCCCCCChhhhHHHHHHHHHhC
Q 035486 62 TRSFSEVVAEAKEAGYTEPDPRDDLSGTDVARKVIILARESG 103 (234)
Q Consensus 62 g~~f~eal~eAq~lGyaE~DP~~Dv~G~Daa~Kl~ILa~~~g 103 (234)
|+-=+-.|..|----.-|..|.+- +.-.|..-||+.+.
T Consensus 255 GmRQsGvLaaaaLval~~~~~~L~----~dHk~A~~lAe~~~ 292 (384)
T KOG1368|consen 255 GMRQSGVLAAAALVALDENVPLLR----ADHKRAKELAEYIN 292 (384)
T ss_pred chhHHHHHHHHHHHHhhcchHHHH----HHHHHHHHHHHHhc
Confidence 444444555544444556666431 22334445666443
No 29
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.30 E-value=1.1e+02 Score=18.46 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHcCCc
Q 035486 137 FDEELAKQRQEAEDAGEV 154 (234)
Q Consensus 137 ~d~~~~~~i~~A~~~G~~ 154 (234)
+|.++.+.+..|++.|-.
T Consensus 1 LD~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 1 LDEEWVELIKEAKESGLS 18 (30)
T ss_dssp --HHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 477888899999999854
Done!