Query 035486
Match_columns 234
No_of_seqs 149 out of 1081
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ebf_A Homoserine dehydrogenas 100.0 9.3E-69 3.2E-73 493.7 19.7 228 1-230 126-358 (358)
2 3do5_A HOM, homoserine dehydro 100.0 2E-64 7E-69 460.0 18.7 202 1-229 123-325 (327)
3 3ing_A Homoserine dehydrogenas 100.0 6.3E-63 2.1E-67 449.9 17.0 195 1-229 125-323 (325)
4 3mtj_A Homoserine dehydrogenas 100.0 2.3E-62 7.9E-67 462.3 19.6 206 1-230 118-327 (444)
5 3c8m_A Homoserine dehydrogenas 100.0 1.9E-60 6.6E-65 433.7 17.6 198 1-229 129-329 (331)
6 2ejw_A HDH, homoserine dehydro 100.0 1.9E-59 6.5E-64 428.1 18.8 201 1-230 106-309 (332)
7 1r0k_A 1-deoxy-D-xylulose 5-ph 92.0 0.062 2.1E-06 49.6 2.3 89 2-113 133-238 (388)
8 3upl_A Oxidoreductase; rossman 89.3 0.51 1.8E-05 44.2 5.9 103 2-112 148-250 (446)
9 2yfq_A Padgh, NAD-GDH, NAD-spe 67.3 0.057 1.9E-06 50.3 -8.8 40 38-77 351-397 (421)
10 2whn_A PILC, pilus assembly pr 46.0 5.1 0.00017 29.2 0.4 47 20-71 25-71 (116)
11 3oqb_A Oxidoreductase; structu 45.8 37 0.0012 29.8 6.1 46 2-48 124-171 (383)
12 1f06_A MESO-diaminopimelate D- 45.4 0.1 3.5E-06 46.1 -10.7 30 2-35 100-130 (320)
13 3c1q_A General secretion pathw 44.6 5.1 0.00018 29.7 0.3 47 20-71 24-70 (123)
14 1j5p_A Aspartate dehydrogenase 41.2 58 0.002 27.9 6.5 37 2-45 102-139 (253)
15 2amw_A Hypothetical protein NE 40.5 39 0.0013 22.9 4.4 29 85-113 33-64 (83)
16 1dv5_A APO-DCP, APO-D-alanyl c 39.6 31 0.0011 23.4 3.7 34 80-113 27-63 (80)
17 2khv_A Phage integrase; soluti 36.6 27 0.00094 24.3 3.1 26 65-90 74-100 (106)
18 4ew6_A D-galactose-1-dehydroge 35.6 68 0.0023 27.7 6.2 49 2-52 122-170 (330)
19 2dc1_A L-aspartate dehydrogena 33.3 22 0.00074 29.2 2.4 31 2-32 92-122 (236)
20 3mz0_A Inositol 2-dehydrogenas 32.0 74 0.0025 27.3 5.8 46 2-47 107-154 (344)
21 3evn_A Oxidoreductase, GFO/IDH 32.0 86 0.0029 26.7 6.2 47 2-49 108-156 (329)
22 3o9z_A Lipopolysaccaride biosy 31.4 79 0.0027 27.0 5.8 47 2-49 113-159 (312)
23 3v5n_A Oxidoreductase; structu 31.1 83 0.0029 28.1 6.1 47 2-49 151-199 (417)
24 2glx_A 1,5-anhydro-D-fructose 30.6 90 0.0031 26.4 6.0 48 2-50 103-152 (332)
25 2ho3_A Oxidoreductase, GFO/IDH 30.5 89 0.003 26.5 6.0 46 2-49 103-148 (325)
26 3dty_A Oxidoreductase, GFO/IDH 28.5 1E+02 0.0035 27.2 6.2 46 2-48 126-173 (398)
27 1ydw_A AX110P-like protein; st 28.2 51 0.0017 28.6 4.1 47 2-49 112-161 (362)
28 3lys_A Prophage PI2 protein 01 27.8 46 0.0016 23.3 3.1 22 65-86 79-100 (112)
29 3rc1_A Sugar 3-ketoreductase; 27.8 1.2E+02 0.004 26.3 6.4 47 2-49 130-178 (350)
30 3ec7_A Putative dehydrogenase; 27.4 92 0.0031 27.0 5.6 46 2-47 128-175 (357)
31 2kjs_A Putative acyl carrier p 26.7 36 0.0012 23.9 2.3 29 83-111 28-59 (87)
32 3ip3_A Oxidoreductase, putativ 25.3 99 0.0034 26.4 5.4 48 2-49 108-158 (337)
33 1lc0_A Biliverdin reductase A; 25.2 77 0.0026 26.8 4.6 38 2-41 106-143 (294)
34 2f46_A Hypothetical protein; s 25.1 42 0.0014 25.7 2.6 73 4-78 64-143 (156)
35 2lki_A Putative uncharacterize 24.3 43 0.0015 24.4 2.4 29 85-113 55-86 (105)
36 3e9m_A Oxidoreductase, GFO/IDH 24.1 1.3E+02 0.0045 25.6 5.9 47 2-49 108-156 (330)
37 3cea_A MYO-inositol 2-dehydrog 23.4 1.3E+02 0.0045 25.5 5.8 46 2-48 112-160 (346)
38 3ohs_X Trans-1,2-dihydrobenzen 23.0 1.5E+02 0.005 25.3 6.0 47 2-49 107-155 (334)
39 3bz1_y Protein YCF12; electron 22.5 18 0.00062 23.2 0.0 15 45-60 1-15 (46)
40 1zh8_A Oxidoreductase; TM0312, 22.3 1.7E+02 0.0057 25.1 6.3 47 2-49 123-171 (340)
41 3i23_A Oxidoreductase, GFO/IDH 21.1 1.5E+02 0.0052 25.4 5.7 46 2-48 106-153 (349)
42 2kob_A Uncharacterized protein 21.0 63 0.0021 21.9 2.7 23 65-87 73-95 (108)
43 1auu_A SACY; antitermination, 20.8 78 0.0027 20.7 2.9 22 188-212 9-30 (55)
44 3db2_A Putative NADPH-dependen 20.3 1.9E+02 0.0064 24.8 6.2 46 2-48 107-154 (354)
45 2oxo_A Integrase; DNA-binding 20.1 74 0.0025 20.8 2.8 23 65-87 74-96 (103)
46 4had_A Probable oxidoreductase 20.0 1.8E+02 0.0063 24.6 6.0 47 2-49 127-175 (350)
No 1
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Probab=100.00 E-value=9.3e-69 Score=493.75 Aligned_cols=228 Identities=50% Similarity=0.868 Sum_probs=219.0
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhcc----CCCCCHHHHHHHHHHcC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSF----VGTRSFSEVVAEAKEAG 76 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m----~~g~~f~eal~eAq~lG 76 (234)
|+||. +|+++|+.|+||++|++|+|+|+++++++.+|++|.+|+||+|||+||||++| ++|.+|+++|++||++|
T Consensus 126 ~~eL~-~A~~~gv~~~~Ea~vg~giPii~~l~~~l~~G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~G 204 (358)
T 1ebf_A 126 WKALF-SNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLG 204 (358)
T ss_dssp HHHHT-CCCTTCCCEECGGGTTTTSSCHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHT
T ss_pred HHHHH-HHHHcCCEEEEccccccCCcHHHHHHHHHHcCCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHcC
Confidence 47899 99999999999999999999999999999779999999999999999999999 77999999999999999
Q ss_pred CCCCCcCCCCCChhhhHHHHHHHHHhCCCCCCCC-eeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcE
Q 035486 77 YTEPDPRDDLSGTDVARKVIILARESGLKLELSD-LPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVL 155 (234)
Q Consensus 77 yaE~DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~d-v~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~l 155 (234)
|||+||++||+|+|+|+|++||||++|.+++++| |++++++|+++++..+.++|+++|+.+|..|+++++.|+++|+++
T Consensus 205 yaE~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~d~v~~egi~p~~~~~~~~~~~f~~~l~~~d~~~~~~~~~A~~~g~~i 284 (358)
T 1ebf_A 205 YTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVL 284 (358)
T ss_dssp CSCSSTHHHHTCHHHHHHHHHHHHHTTCCCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEE
T ss_pred CCCCCcccCCCChhHHHHHHHHHHhcCCCCCCCCeeEEeccccccccccccHHHHHhcCcccchhhHHHHHHHHHCCCEE
Confidence 9999999999999999999999997799999999 999999999999998899999999999999999999999999999
Q ss_pred EEEEEEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486 156 RYVGVVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 156 k~v~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~ 230 (234)
||||.++..+++++|+|+.||++|||++|+|++|+|.|+|++| ++|++|+|||||+.+||+||++||+++++++
T Consensus 285 klv~~~~~~~~~~~v~~~~v~~~~pla~v~g~~N~v~~~~~~~-~~~~~~~G~GAG~~~TA~av~~Dii~i~~~~ 358 (358)
T 1ebf_A 285 RFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL 358 (358)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSGGGGCCTTCEEEEEEESSC-SSCEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeCCCeEEEEEEEECCCCccccCCCCCEEEEEecccc-CccEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence 9999998644479999999999999999999999999999999 5599999999999999999999999999864
No 2
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2e-64 Score=459.97 Aligned_cols=202 Identities=30% Similarity=0.496 Sum_probs=192.4
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccC-CCCCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV-GTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~-~g~~f~eal~eAq~lGyaE 79 (234)
|++|.++|+++|+.|+||++|++|+|+|+++++++ .+++|.+|+|||||||||||++|+ +|.+|+++|++||++||||
T Consensus 123 ~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~~l-~~~~I~~I~GIlnGT~nyilt~m~~~g~~f~~~l~~Aq~~GyaE 201 (327)
T 3do5_A 123 FHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYL-ALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAE 201 (327)
T ss_dssp HHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHTTT-TTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHHHh-hCCCccEEEEEECCCcCcchhhcCcCCcCHHHHHHHHHHcCCCC
Confidence 57999999999999999999999999999999998 799999999999999999999996 6999999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHHHhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILARESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVG 159 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~ 159 (234)
+||++||+|+|+|+|++||||+.|.+++++||++ +||+.++ . ++++.|+++|+++||||
T Consensus 202 ~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~dv~~-----~gi~~i~-~---------------~~~~~A~~~g~~iklv~ 260 (327)
T 3do5_A 202 ADPSYDVEGIDAALKLVIIANTIGVKASYEDVEV-----TGITQIT-P---------------EAFQVAAEKGYTIRLIA 260 (327)
T ss_dssp SSCHHHHTSHHHHHHHHHHHHHTTCCCCGGGSEE-----CCSTTCC-H---------------HHHHHHHTTTEEEEEEE
T ss_pred CCchhhcCChhHHHHHHHHHHhhCCCCCHHHeee-----eCCCCCC-H---------------HHHHHHHHCCCEEEEEE
Confidence 9999999999999999999997799999999999 8888887 2 57899999999999999
Q ss_pred EEEeeCCeeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486 160 VVDAINKEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 229 (234)
Q Consensus 160 ~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~ 229 (234)
.++ +++++|+|++||++|||+ |+|++|+|.|+|++|+ +++|+|||||+.+||+||++||+++++.
T Consensus 261 ~~~--~~~~~V~p~~v~~~~pla-v~g~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~ 325 (327)
T 3do5_A 261 EVS--REKLKVSPRLVPFHHPLA-IKGTMNAAMFKTDTAG--SIFVAGRGAGKEETASAILSDLYEIYAG 325 (327)
T ss_dssp EES--SSCEEEEEEEEETTSGGG-CCSSCEEEEEEESSSC--EEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred EEE--CCeEEEEEEEECCCCceE-ECCCceEEEEEecccC--cEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 995 357999999999999999 9999999999999995 8999999999999999999999999874
No 3
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=100.00 E-value=6.3e-63 Score=449.90 Aligned_cols=195 Identities=28% Similarity=0.380 Sum_probs=184.3
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|++|.++|+++|+.|+|||+|++|+|+|++|++++ +|++|.+|+|||||||||||++|++|.+|+|+|++||++||||+
T Consensus 125 ~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~~l-~g~~I~~i~Gi~nGT~nyil~~m~~g~~f~~~l~~Aq~~GyaE~ 203 (325)
T 3ing_A 125 WHDIMDSANQNSKYIRYEATVAGGVPLFSVLDYSI-LPSKVKRFRGIVSSTINYVIRNMANGRSLRDVVDDAIKKGIAES 203 (325)
T ss_dssp HHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHHTC-TTCCEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCS
T ss_pred HHHHHHHHHHcCCeEEEEeeecccCHHHHHHHHHh-hCCCeeEEEEEEEeeeeEEeecccCCCCHHHHHHHHHHcCCCCC
Confidence 57999999999999999999999999999999998 89999999999999999999999889999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHH-hCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARE-SGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVG 159 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~ 159 (234)
||++||+|+|+|+|++||||+ ||.+++++||++ +||++++.. +++ ||||
T Consensus 204 DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~~~~v~~-----~gi~~~~~~----------------~~~---------k~v~ 253 (325)
T 3ing_A 204 NPQDDLNGLDAARKSVILVNHIFGTEYTLNDVEY-----SGVDERSYN----------------AND---------RLVT 253 (325)
T ss_dssp STHHHHTTHHHHHHHHHHHHHHHCCCCCGGGSBC-----CCCCSSCCC----------------TTE---------EEEE
T ss_pred CcccccCChhHHHHHHHHHHHHcCCCCCHHHeee-----eCcCcCCHH----------------HHh---------CceE
Confidence 999999999999999999995 899999999999 888888731 111 9999
Q ss_pred EEEeeCCeeEEEEEEe--cCCCCcccccCCceEE-EEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486 160 VVDAINKEGRVELRRY--KKDHPFAQLSGSDNII-AFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 229 (234)
Q Consensus 160 ~~~~~~~~~~V~p~~v--~~~~pla~v~g~~N~v-~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~ 229 (234)
.++..+++++|+|+++ |++|||+ ++|++|+| .|+|++++ +++|+|+|||+.+||+||++||+++++.
T Consensus 254 ~~~~~~~~~~V~p~~~~~~~~~pla-v~g~~n~v~~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~~~~~ 323 (325)
T 3ing_A 254 EVYVDDRRPVAVSRIISLNKDDFLM-SIGMDGLGYQIETDSNG--TVNVSDIYDGPYETAGAVVNDILLLSKV 323 (325)
T ss_dssp EEEEETTEEEEEEEEEECCTTCGGG-GSCTTCCEEEEEESSSC--EEEEECSCCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCEEEEEEEEEcCCCCCcee-eCCCceEEEEEEccccC--cEEEEcCCCChHHHHHHHHHHHHHHHhh
Confidence 9987778899999999 9999999 99999999 99999996 8999999999999999999999999875
No 4
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=100.00 E-value=2.3e-62 Score=462.30 Aligned_cols=206 Identities=25% Similarity=0.414 Sum_probs=194.9
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccC-CCCCHHHHHHHHHHcCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFV-GTRSFSEVVAEAKEAGYTE 79 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~-~g~~f~eal~eAq~lGyaE 79 (234)
++||.++|+++|+.|+|||+|++|+|+|+++++++ .+++|.+|+||+|||+||||++|. +|.+|+++|++||++||||
T Consensus 118 ~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL-~~~~Ig~I~GIlnGT~nyilt~m~~~g~~f~~~l~eAq~lGyaE 196 (444)
T 3mtj_A 118 GNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGL-TANRIEWLAGIINGTSNFILSEMRDKGAAFDDVLKEAQRLGYAE 196 (444)
T ss_dssp HHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTT-TTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHH-hCCCCceEEEEEcCCcccccccCCCCCCCHHHHHHHHHHcCCCc
Confidence 36899999999999999999999999999999998 789999999999999999999996 5999999999999999999
Q ss_pred CCcCCCCCChhhhHHHHHHHH-HhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEE
Q 035486 80 PDPRDDLSGTDVARKVIILAR-ESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYV 158 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v 158 (234)
+||++||+|+|+|+|++|||| +||.+++++||++ +||+.++. .+++.|++.|+++|||
T Consensus 197 ~DP~~Dv~G~Daa~Kl~ILa~~a~g~~~~~~dv~~-----egi~~i~~----------------~d~~~A~~~g~~ikl~ 255 (444)
T 3mtj_A 197 ADPTFDIEGIDAAHKLTILSAIAFGIPMQFERAYT-----EGISQLTR----------------EDVRYAEELGYRIKLL 255 (444)
T ss_dssp SSCHHHHTSHHHHHHHHHHHHHHHTCCCCGGGCEE-----CCSTTCCH----------------HHHHHHHHTTEEEEEE
T ss_pred CCccceecChhHHHHHHHHHHHHcCCCCCHHHeee-----ecCCCCCH----------------HHHHHHHHCCCEEEEE
Confidence 999999999999999999999 5999999999999 89999982 4678899999999999
Q ss_pred EEEEeeCC--eeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486 159 GVVDAINK--EGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 159 ~~~~~~~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~ 230 (234)
|.+++.++ +++|.|++||++||||+|+|++|+|.|+|+.++ |++|+|||||+.|||+||++||+++++++
T Consensus 256 ~~~~~~~~~~~~~V~p~~vp~~~pla~v~g~~Nav~~~~~~~g--~~~~~G~GAG~~~TAsaV~~Dii~i~~~~ 327 (444)
T 3mtj_A 256 GIARRAENGIELRVHPTLIPERRLIANVDGAMNAVLVKGDAVG--PTLYYGAGAGSEPTASAVVADLVDVTRLH 327 (444)
T ss_dssp EEEEECSSSEEEEEEEEEEETTSTGGGCCTTEEEEEEEETTTE--EEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEEEEEECCCCccccCCCCceEEEEEecccC--cEEEEcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99976544 579999999999999999999999999999985 99999999999999999999999999974
No 5
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=100.00 E-value=1.9e-60 Score=433.73 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=187.1
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|++|.++|+++|+.|+||++|++|+|+|+++++++ .|++|.+|+||+|||+||||++|++|.+|+++|++||++||||+
T Consensus 129 ~~eL~~~A~~~gv~~~~ea~vg~giPii~~l~~~l-~g~~I~~I~GI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~ 207 (331)
T 3c8m_A 129 WPEIMEYARSNNRRIRYEATVAGGVPLFSFIDYSV-LPSRIKKFRGIVSLTINYFIRELANKREFDDVLSEATKLGIVEK 207 (331)
T ss_dssp HHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHHHS-TTCCCCEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHcCCEEEEEeecccccHHHHHHHHHh-hcCcccEEEEEEeccceeEecchhcCCCHHHHHHHHHHcCCCCC
Confidence 47899999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHH-HhCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILAR-ESGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVG 159 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~-~~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~ 159 (234)
||++|++|+|+++|++|||| +||.+++++||++ +||+.++. + .|+++||||
T Consensus 208 dP~~Dv~G~D~a~Kl~iLa~~a~g~~~~~~~v~~-----~gi~~~~~----------------~-------~g~~ikl~~ 259 (331)
T 3c8m_A 208 NYKDDLTGLDAARKSVILCNHLYGSSYRLSDVFY-----EGILDQDR----------------S-------FGKNERLVT 259 (331)
T ss_dssp SCHHHHTTHHHHHHHHHHHHHHHCCCCCGGGSEE-----CCCC-CCC----------------C-------CCTTEEEEE
T ss_pred CcccCCCCccHHHHHHHHHHHHhCCCCChhheEE-----eCcccCCh----------------h-------cCCEEEEEE
Confidence 99999999999999999999 5999999999999 88888872 1 899999999
Q ss_pred EEEeeCC--eeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHh
Q 035486 160 VVDAINK--EGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 229 (234)
Q Consensus 160 ~~~~~~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~ 229 (234)
.+++.++ +++|+|++||++|||++++|++|+|.|+|+.|+ |++|+|+|||+.+||+||++||++++++
T Consensus 260 ~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~ 329 (331)
T 3c8m_A 260 ETGIVNGKPSAESRIKSLDSNDYLLTLGKGSLGYQLQTDTNG--TLNVSDLYDGPYETAGAVMNDLVILSMF 329 (331)
T ss_dssp EEEEETTEEEEEEEEEECCTTCGGGGSCTTCCEEEEECSSSC--EEEEECSSCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCcEEEEEEEEEECCCCccccCCCCcEEEEeeccccC--cEEEEeCCCChHHhHHHHHHHHHHHHhc
Confidence 9987655 589999999999999999999999999999995 8999999999999999999999999975
No 6
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-59 Score=428.12 Aligned_cols=201 Identities=32% Similarity=0.528 Sum_probs=190.8
Q ss_pred ChHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCC
Q 035486 1 YLKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEP 80 (234)
Q Consensus 1 y~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~ 80 (234)
|+||.++|+++ .|+||++|++|+|+|++++ .+ .+++|.+|+||+|||+||||++|++|.+|+++|++||++||||+
T Consensus 106 ~~eL~~~A~~~--~~~~Ea~vg~giPii~~l~-~l-~~~~I~~I~gI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~ 181 (332)
T 2ejw_A 106 WESLRPFAEEG--LIYHEASVMAGTPALSFLE-TL-RGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRLGYAEA 181 (332)
T ss_dssp HHHHHHHHHTT--CEECGGGTTTTSSSHHHHH-HH-TTSEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHhC--CeEEEEEcccCCHHHHHHH-Hh-cCCCcceEEEEEecccccccCccccCCCHHHHHHHHHHCCCCCC
Confidence 47899999998 9999999999999999999 77 78999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhHHHHHHHHH-hCCCCCCCCeeeccCCCccccCCCCHHHHHhcCCcchHHHHHHHHHHHHcCCcEEEEE
Q 035486 81 DPRDDLSGTDVARKVIILARE-SGLKLELSDLPVRSLVPEPLKACASAEEFMKQLPQFDEELAKQRQEAEDAGEVLRYVG 159 (234)
Q Consensus 81 DP~~Dv~G~Daa~Kl~ILa~~-~g~~i~~~dv~~~~~~p~gi~~i~~~~~~~~~l~~~d~~~~~~i~~A~~~G~~lk~v~ 159 (234)
||++|++|+|+++|++|||++ ||.+++++||++ +||++++. ++++.|++.|+++||||
T Consensus 182 dP~~Dv~G~d~a~Kl~iLa~~~~G~~~~~~~v~~-----egi~~i~~----------------~di~~a~~~g~~ikl~~ 240 (332)
T 2ejw_A 182 DPTLDVEGIDAAHKLTLLARLLVDPGFPFAEVEA-----QGIARLTP----------------EVLQKAEARGERVRLVA 240 (332)
T ss_dssp SCHHHHTTHHHHHHHHHHHHHHTCTTCCGGGCEE-----CCSTTCCH----------------HHHHHHHHTTEEEEEEE
T ss_pred CCccccCchhHHHHHHHHHHHHhCCCCCHHHeEe-----cCcCcCCH----------------HHHHHHHHCCCEEEEEE
Confidence 999999999999999999996 999999999999 88998872 57899999999999999
Q ss_pred EEEeeCC--eeEEEEEEecCCCCcccccCCceEEEEEecccCCcCeEEEcCCCChhHHHHHHHHHHHHHHHhc
Q 035486 160 VVDAINK--EGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 230 (234)
Q Consensus 160 ~~~~~~~--~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~~~G~GAG~~~TA~aVl~Dll~i~~~~ 230 (234)
.++..++ +++|+|+++|++|||++++| |+|.|+|+.|+ +++|+|+|||+.+||+||++||++++++.
T Consensus 241 ~~~~~~~~~~~~V~p~~v~~~~pla~v~g--N~v~~~~~~~g--~~~~~G~GAG~~~TAsav~~Di~~i~~~~ 309 (332)
T 2ejw_A 241 SLFGEGGRWRAAVAPRRLPQDHPLARARG--NALWVRARPLG--EAFVTGPGAGGGATASGLFADLLRFLSGA 309 (332)
T ss_dssp EEEEETTEEEEEEEEEEEETTSHHHHCSS--EEEEEEEETTE--EEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCCcEEEEEEEEEECCCChhhcCCC--CEEEeeccccC--cEEEEeCCCChHHHHHHHHHHHHHHHHhc
Confidence 9987555 47999999999999999999 99999999996 89999999999999999999999999874
No 7
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=92.03 E-value=0.062 Score=49.57 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=58.9
Q ss_pred hHHHHHHHhcCCeEEEeeecccccch---HHHHHHhhhcCCceEEEEEE-ecccH----HHHHhccCCCCCHHHHHHHHH
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPI---ISTLRGLLETGDHILRIEGI-FSGTL----SYLFNSFVGTRSFSEVVAEAK 73 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPi---i~~l~~~~~~gd~I~~i~GI-lNGT~----NyIL~~m~~g~~f~eal~eAq 73 (234)
++|.++|+++|+.+ +|| .+.+..++ .|+++.+|+|| ++++. +|.+.+| ...++++|++
T Consensus 133 ~~l~~~A~~~gv~l---------iPVDseh~Ai~q~L-~g~~i~~v~~IilTaSGGpfr~~~~~~l-~~vt~~~Al~--- 198 (388)
T 1r0k_A 133 GLMIDAVREHGTTL---------LPVDSEHNAIFQCF-PHHNRDYVRRIIITASGGPFRTTSLAEM-ATVTPERAVQ--- 198 (388)
T ss_dssp HHHHHHHHHHTCEE---------EECSHHHHHHHHHC-CTTCGGGEEEEEEEECCCTTTTCCHHHH-TTCCHHHHHC---
T ss_pred HHHHHHHHHcCCEE---------EEechhHHHHHHHh-hCCCccceeEEEEEeecccccCCCHHHH-hcCCHHHhcc---
Confidence 57899999999998 899 88999998 68887778884 56665 6777777 4788887773
Q ss_pred HcCCCCCCcCCCCC---ChhhhHHH-----HHHHH-HhCCCCCCCCeee
Q 035486 74 EAGYTEPDPRDDLS---GTDVARKV-----IILAR-ESGLKLELSDLPV 113 (234)
Q Consensus 74 ~lGyaE~DP~~Dv~---G~Daa~Kl-----~ILa~-~~g~~i~~~dv~~ 113 (234)
+|+..-. -+|+|.-. +|=|+ .||.+ +++|++
T Consensus 199 -------hp~W~mG~KitiDSAtm~NkglevIEa~~Lf~~~--~~~I~v 238 (388)
T 1r0k_A 199 -------HPNWSMGAKISIDSATMMNKGLELIEAFHLFQIP--LEKFEI 238 (388)
T ss_dssp -------------CHHHHHHHHHTHHHHHHHHHHHHHHCCC--GGGEEE
T ss_pred -------CCCCCCcchhhhHHHHHHcCcCccccccccCCCC--HHHeee
Confidence 4543221 13444332 55566 47876 345544
No 8
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=89.25 E-value=0.51 Score=44.16 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=76.9
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHHHHHcCCCCCC
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAGYTEPD 81 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lGyaE~D 81 (234)
++|.++|+++|+.|.+...--- -++++.++.....|-++.... -||-|...+. .+.+..-.+|++.|+...-
T Consensus 148 ~eL~~~A~e~Gvvl~~~~gdqp-~~~~eLv~~a~~~G~~~v~~G---kg~~~~~~~~----~t~~~~~~~a~~~~~~~~m 219 (446)
T 3upl_A 148 PYLKAQADKQGVIYSLGAGDEP-SSCMELIEFVSALGYEVVSAG---KGKNNPLNFD----ATPDDYRQEADRRNMNVRL 219 (446)
T ss_dssp HHHHHHHHHHTCCEEECTTSHH-HHHHHHHHHHHHTTCEEEEEE---EEESSCCCTT----CCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhCCeeeecCCcch-HHHHHHHHHHHhCCCeEEEec---cCcCCcccCC----CChhHHHHHHHHCCCChHH
Confidence 5899999999999988763322 237777777664566555554 6666544433 3456678899999998877
Q ss_pred cCCCCCChhhhHHHHHHHHHhCCCCCCCCee
Q 035486 82 PRDDLSGTDVARKVIILARESGLKLELSDLP 112 (234)
Q Consensus 82 P~~Dv~G~Daa~Kl~ILa~~~g~~i~~~dv~ 112 (234)
.+..++|..++....++||+.|..++.....
T Consensus 220 ~~sf~dgtk~~~Em~~vaNatGl~p~~~g~~ 250 (446)
T 3upl_A 220 LVEFIDGSKTMVEMAAIANATGLVPDIAGMH 250 (446)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHCCBCSSTTCC
T ss_pred hhhhccccHHHHHHHHHHhhcCCCCCCCCcc
Confidence 8889999999999999999999876654443
No 9
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=67.31 E-value=0.057 Score=50.32 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=34.6
Q ss_pred CCceEEEEEEecccHHH-----HHhccCC--CCCHHHHHHHHHHcCC
Q 035486 38 GDHILRIEGIFSGTLSY-----LFNSFVG--TRSFSEVVAEAKEAGY 77 (234)
Q Consensus 38 gd~I~~i~GIlNGT~Ny-----IL~~m~~--g~~f~eal~eAq~lGy 77 (234)
|..+..+|++.|+|.|| |+++|++ +.+|++++++||+.|+
T Consensus 351 GV~vS~~E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~A~~~g~ 397 (421)
T 2yfq_A 351 GVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNV 397 (421)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 44556778889999999 9999987 7899999999999875
No 10
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=46.03 E-value=5.1 Score=29.19 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=31.7
Q ss_pred ecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHH
Q 035486 20 TVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAE 71 (234)
Q Consensus 20 sVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~e 71 (234)
-+.+|+|+.+.|+-.... ... ..+.--..-+..++++|.+|++||++
T Consensus 25 ll~sGi~l~~aL~~~~~~---~~~--~~~~~~~~~i~~~l~~G~sls~al~~ 71 (116)
T 2whn_A 25 MLGAGLTLLQALAILERQ---TEN--RKFREILKQVRTDVEGGMAFSEALSK 71 (116)
T ss_dssp HHHHTCCHHHHHHHHTTS---CCS--HHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHH---hCC--HHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 467899999999865421 110 11223455666777889999999975
No 11
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=45.81 E-value=37 Score=29.75 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcC--CceEEEEEEe
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETG--DHILRIEGIF 48 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~g--d~I~~i~GIl 48 (234)
++|.++|+++|+.+ +.+...-..|.+..+++.+..| .+|..+++.+
T Consensus 124 ~~l~~~a~~~~~~~-~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~ 171 (383)
T 3oqb_A 124 LEVVKLANSKGVKH-GTVQDKLFLPGLKKIAFLRDSGFFGRILSVRGEF 171 (383)
T ss_dssp HHHHHHHHHTTCCE-EECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEEE
T ss_pred HHHHHHHHHcCCeE-EEEeccccCHHHHHHHHHHHcCCCCCcEEEEEEe
Confidence 57889999999964 8888999999999999998655 3688887754
No 12
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=45.41 E-value=0.1 Score=46.12 Aligned_cols=30 Identities=3% Similarity=-0.074 Sum_probs=17.0
Q ss_pred hHHHHHHHhcC-CeEEEeeecccccchHHHHHHhh
Q 035486 2 LKLRSLQRKSY-THYFYEATVGAGLPIISTLRGLL 35 (234)
Q Consensus 2 ~eL~~la~~~g-~~~~yEasVgggiPii~~l~~~~ 35 (234)
++|.+++++++ +.+.|. +-.|-+..+++.+
T Consensus 100 ~~l~~~a~~~~~v~v~~~----~~~p~~~~l~~~l 130 (320)
T 1f06_A 100 QVMNEAATAAGNVALVST----GWDPGMFSINRVY 130 (320)
T ss_dssp HHHHHHHHHHTCEEECSC----SBTTBHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEec----CChHHHHHHHHHH
Confidence 67888898877 444443 3344444444433
No 13
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=44.60 E-value=5.1 Score=29.66 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=32.3
Q ss_pred ecccccchHHHHHHhhhcCCceEEEEEEecccHHHHHhccCCCCCHHHHHHH
Q 035486 20 TVGAGLPIISTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVAE 71 (234)
Q Consensus 20 sVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~NyIL~~m~~g~~f~eal~e 71 (234)
-+.+|+|+.+.|+-......+ ..+.-...-|..++++|.+|++||++
T Consensus 24 ll~sGv~l~~aL~~~~~~~~~-----~~l~~~l~~i~~~l~~G~sls~Al~~ 70 (123)
T 3c1q_A 24 LVQSGMPLEECLRAVAEQSEK-----PRIRTMLVAVRAKVTEGYTLSDSLGD 70 (123)
T ss_dssp HHHTTCCHHHHHHHHHHTCSC-----HHHHHHHHHHHHHHHTTCCHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHCCCCHHHHHHh
Confidence 367899999999876532111 12233456677777889999999964
No 14
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=41.16 E-value=58 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCeEEE-eeecccccchHHHHHHhhhcCCceEEEE
Q 035486 2 LKLRSLQRKSYTHYFY-EATVGAGLPIISTLRGLLETGDHILRIE 45 (234)
Q Consensus 2 ~eL~~la~~~g~~~~y-EasVgggiPii~~l~~~~~~gd~I~~i~ 45 (234)
++|.++|+++|.+++. .++++| ++.|+-. . .+|.++.
T Consensus 102 ~~L~~aA~~gg~~l~vpSGAi~G----lD~l~aa--~-g~l~~V~ 139 (253)
T 1j5p_A 102 ERFFSELKNSPARVFFPSGAIGG----LDVLSSI--K-DFVKNVR 139 (253)
T ss_dssp HHHHHHHHTCSCEEECCCTTCCC----HHHHHHH--G-GGEEEEE
T ss_pred HHHHHHHHHCCCeEEecCCcccc----hhHHHHh--c-CCccEEE
Confidence 6789999999999876 554444 5666443 2 4677754
No 15
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=40.51 E-value=39 Score=22.88 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=24.2
Q ss_pred CCCChhhhHHHHHHHH---HhCCCCCCCCeee
Q 035486 85 DLSGTDVARKVIILAR---ESGLKLELSDLPV 113 (234)
Q Consensus 85 Dv~G~Daa~Kl~ILa~---~~g~~i~~~dv~~ 113 (234)
|+..||+..-+-++.. .||+.++.+++..
T Consensus 33 dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~ 64 (83)
T 2amw_A 33 NIPELDSMAVVNVITALEEYFDFSVDDDEISA 64 (83)
T ss_dssp TSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCG
T ss_pred ccCccCHHHHHHHHHHHHHHhCCeeCHHhhhH
Confidence 7778899999999887 3999998888754
No 16
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=39.58 E-value=31 Score=23.42 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=26.1
Q ss_pred CCcCCCCCChhhhHHHHHHHH---HhCCCCCCCCeee
Q 035486 80 PDPRDDLSGTDVARKVIILAR---ESGLKLELSDLPV 113 (234)
Q Consensus 80 ~DP~~Dv~G~Daa~Kl~ILa~---~~g~~i~~~dv~~ 113 (234)
..+-.|..|+|+..-+-++.. .||+.++.+++..
T Consensus 27 d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~ 63 (80)
T 1dv5_A 27 DLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDR 63 (80)
T ss_dssp SCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCT
T ss_pred CcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCH
Confidence 345556666999999999887 3899998777755
No 17
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=36.57 E-value=27 Score=24.27 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCC-CcCCCCCChh
Q 035486 65 FSEVVAEAKEAGYTEP-DPRDDLSGTD 90 (234)
Q Consensus 65 f~eal~eAq~lGyaE~-DP~~Dv~G~D 90 (234)
+..+++.|.+.|+-+. ||...+.|..
T Consensus 74 l~~i~~~Av~~~~i~~~NP~~~v~~~~ 100 (106)
T 2khv_A 74 IESVLDWATVRGYREGDNPARWRGYLE 100 (106)
T ss_dssp HHHHHHHHHHHTSSCSCCTTSCSSTTT
T ss_pred HHHHHHHHHHcCCcCCCCchHHHHHHH
Confidence 4568889999999999 9999888754
No 18
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=35.64 E-value=68 Score=27.67 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=40.4
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEecccH
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFSGTL 52 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlNGT~ 52 (234)
++|.++|+++|+.+ +.+...--.|.+..+++.+.. .+|-++..++....
T Consensus 122 ~~l~~~a~~~g~~~-~v~~~~r~~p~~~~~k~~i~~-g~iG~v~~~~~~~~ 170 (330)
T 4ew6_A 122 ADLEALANKQGASL-FASWHSRYAPAVEAAKAFLAS-TTIKSVHVIWKEDV 170 (330)
T ss_dssp HHHHHHHHHHTCCE-EECCGGGGSTTHHHHHHHHHS-SCEEEEEEEEECBH
T ss_pred HHHHHHHHhcCCeE-EEEehhhccHHHHHHHHHHhc-CCceEEEEEEccCc
Confidence 57889999999965 788889999999999999965 56888887765543
No 19
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=33.25 E-value=22 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHH
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLR 32 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~ 32 (234)
++|.++++++|+.+++++.+.||++.++..+
T Consensus 92 ~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~ 122 (236)
T 2dc1_A 92 SRVREVCRKTGRRVYIASGAIGGLDAIFSAS 122 (236)
T ss_dssp HHHHHHHHHHCCCEEECCTTCSCHHHHHHTG
T ss_pred HHHHHHHHhcCCeEEecCccccChHHHHHhh
Confidence 5788999999999999999999988776543
No 20
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.99 E-value=74 Score=27.31 Aligned_cols=46 Identities=11% Similarity=-0.054 Sum_probs=38.4
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEE
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGI 47 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GI 47 (234)
++|.++|+++|+.+++.+-..--.|.+..+++.+..|. +|..++..
T Consensus 107 ~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~ 154 (344)
T 3mz0_A 107 MRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA 154 (344)
T ss_dssp HHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 57889999999999888889999999999999986543 57777654
No 21
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=31.96 E-value=86 Score=26.73 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=37.3
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +++-..--.|.+..+++++..|. +|..++..+.
T Consensus 108 ~~l~~~a~~~~~~~-~v~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~ 156 (329)
T 3evn_A 108 NELFALAESCNLFL-MEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTA 156 (329)
T ss_dssp HHHHHHHHHTTCCE-EEECSSCSSHHHHHHHHHHHTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHcCCEE-EEEEcccCCHHHHHHHHHHhCCCCCCeEEEEEEec
Confidence 57889999999877 67878888999999999986543 6777776543
No 22
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=31.39 E-value=79 Score=27.04 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=38.6
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +.+-..--.|.+..+++.+..|.+|..++..+.
T Consensus 113 ~~l~~~a~~~g~~~-~v~~~~R~~p~~~~~k~~i~~gG~i~~v~~~~~ 159 (312)
T 3o9z_A 113 ARLKELEARTGRRV-YTVLQLRVHPSLLALKERLGQEKGAKDVVLTYV 159 (312)
T ss_dssp HHHHHHHHHHCCCE-EECCGGGGCHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred HHHHHHHHHcCCEE-EEEeehhcCHHHHHHHHHHHcCCCEEEEEEEEE
Confidence 57889999999876 566667788999999999987778888886654
No 23
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=31.10 E-value=83 Score=28.05 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.0
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +.+-..--.|.+..+++++..|. +|..+++.++
T Consensus 151 ~~l~~~a~~~g~~~-~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~ 199 (417)
T 3v5n_A 151 KKLKKAADESDALF-VLTHNYTGYPMVRQAREMIENGDIGAVRLVQMEYP 199 (417)
T ss_dssp HHHHHHHHHCSSCE-EEECGGGGSHHHHHHHHHHHTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHcCCEE-EEEecccCCHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence 57889999999977 77788888999999999987654 7888887664
No 24
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=30.59 E-value=90 Score=26.40 Aligned_cols=48 Identities=6% Similarity=-0.038 Sum_probs=38.8
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEecc
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFSG 50 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlNG 50 (234)
++|.++|+++|+.+ +.+....-.|.+..+++.+..|. +|..++..++.
T Consensus 103 ~~l~~~a~~~g~~~-~~~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~~~ 152 (332)
T 2glx_A 103 REMVVAAREAGVVL-GTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAV 152 (332)
T ss_dssp HHHHHHHHHHTCCE-EECCCGGGSHHHHHHHHHHHTTTTSSEEEEEEEEEC
T ss_pred HHHHHHHHHcCCEE-EEeehhhcCHHHHHHHHHHHcCCCCCeEEEEEEEcc
Confidence 57889999999885 56778888999999999886553 68888877654
No 25
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=30.52 E-value=89 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +.+...--.|.+..+++.+.. .+|..++..+.
T Consensus 103 ~~l~~~a~~~g~~~-~~~~~~r~~p~~~~~~~~i~~-G~i~~v~~~~~ 148 (325)
T 2ho3_A 103 FDLIQTAEKNNCFI-FEAARNYHEKAFTTIKNFLAD-XQVLGADFNYA 148 (325)
T ss_dssp HHHHHHHHHTTCCE-EEECTTTTCHHHHHHHHHHTT-SCEEEEEEEEE
T ss_pred HHHHHHHHHcCCEE-EEEEhhhcChHHHHHHHHhhh-cCccEEEEEec
Confidence 57889999999876 778888889999999999865 57988887654
No 26
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=28.45 E-value=1e+02 Score=27.16 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=38.1
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEe
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIF 48 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIl 48 (234)
++|.++|+++|+.+ +.+-..-..|.+..+++++..|. +|..+++-+
T Consensus 126 ~~l~~~a~~~g~~~-~v~~~~r~~p~~~~~k~~i~~G~iG~i~~v~~~~ 173 (398)
T 3dty_A 126 ENLRELSHKHNRIV-GVTYGYAGHQLIEQAREMIAAGELGDVRMVHMQF 173 (398)
T ss_dssp HHHHHHHHHTTCCE-EECCGGGGSHHHHHHHHHHHTTTTCSEEEEEEEE
T ss_pred HHHHHHHHHcCCeE-EEEecccCCHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 57889999999887 77888889999999999986553 688887765
No 27
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=28.17 E-value=51 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC---ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD---HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd---~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +++...--.|.+..+++.+..|. +|..+++.++
T Consensus 112 ~~l~~~a~~~g~~~-~~~~~~r~~p~~~~~~~~i~~g~~iG~i~~v~~~~~ 161 (362)
T 1ydw_A 112 DKIVDACEANGVQI-MDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFS 161 (362)
T ss_dssp HHHHHHHHTTTCCE-EECCCGGGSGGGTTTTTGGGCTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHcCCEE-EEEEeeccCHHHHHHHHHHHhcCCccceEEEEEEEE
Confidence 57889999999987 46666667899999999886543 7888877653
No 28
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=27.84 E-value=46 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCCCCcCCCC
Q 035486 65 FSEVVAEAKEAGYTEPDPRDDL 86 (234)
Q Consensus 65 f~eal~eAq~lGyaE~DP~~Dv 86 (234)
+..+++.|.+.|+.+.||..+|
T Consensus 79 l~~i~~~Av~~g~i~~NP~~~v 100 (112)
T 3lys_A 79 VRASIQCLIEEGRLQKDFTTRA 100 (112)
T ss_dssp HHHHHHHHHHTTSCSSCTTSST
T ss_pred HHHHHHHHHHCCCcccCccccc
Confidence 5678999999999999998655
No 29
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=27.84 E-value=1.2e+02 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +++-.---.|.+..+++++..|. +|..+++.+.
T Consensus 130 ~~l~~~a~~~g~~~-~v~~~~R~~p~~~~~k~~i~~G~iG~i~~v~~~~~ 178 (350)
T 3rc1_A 130 ERLFAVARERGLLL-MENFMFLHHPQHRQVADMLDEGVIGEIRSFAASFT 178 (350)
T ss_dssp HHHHHHHHHTTCCE-EEECGGGGCTHHHHHHHHHHTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCEE-EEEecccCCHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence 57889999999877 57777788899999999986543 6888887654
No 30
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=27.44 E-value=92 Score=27.03 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=38.0
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEE
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGI 47 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GI 47 (234)
++|.++|+++|+.+.+.+...--.|.+..+++.+..|. +|..++..
T Consensus 128 ~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~ 175 (357)
T 3ec7_A 128 QRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGR 175 (357)
T ss_dssp HHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred HHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 57889999999999888889999999999999886542 56666653
No 31
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=26.70 E-value=36 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCCCChhhhHHHHHHHH---HhCCCCCCCCe
Q 035486 83 RDDLSGTDVARKVIILAR---ESGLKLELSDL 111 (234)
Q Consensus 83 ~~Dv~G~Daa~Kl~ILa~---~~g~~i~~~dv 111 (234)
-.|+.|||+..-+-++++ .||+.++.+++
T Consensus 28 ~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l 59 (87)
T 2kjs_A 28 ANDIDAWDSLSHMNLIVSLEVHYKIKFALGEL 59 (87)
T ss_dssp STTCSCCCHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHhCceecHHHH
Confidence 457789999999999887 39998876554
No 32
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=25.28 E-value=99 Score=26.45 Aligned_cols=48 Identities=23% Similarity=0.133 Sum_probs=38.6
Q ss_pred hHHHHHHHhcCCeE-EEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHY-FYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~-~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ ++.+-..--.|.+..+++.+..|. +|..+++.++
T Consensus 108 ~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~i~~~~~ 158 (337)
T 3ip3_A 108 EKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKS 158 (337)
T ss_dssp HHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHHTTTSSEEEEEEEEE
T ss_pred HHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhcCCccceEEEEEEec
Confidence 57899999999874 678888888999999999986553 6787776543
No 33
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=25.22 E-value=77 Score=26.79 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCCce
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDHI 41 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd~I 41 (234)
++|.++|+++|+. .+++...-..|.++.+++.+. +.+|
T Consensus 106 ~~l~~~a~~~g~~-~~~~~~~r~~p~~~~~~~~i~-~g~i 143 (294)
T 1lc0_A 106 QELWELAAQKGRV-LHEEHVELLMEEFEFLRREVL-GKEL 143 (294)
T ss_dssp HHHHHHHHHTTCC-EEEECGGGGSHHHHHHHHHHT-TCCE
T ss_pred HHHHHHHHHhCCE-EEEEEhHhccHHHHHHHHHHh-cCCe
Confidence 5789999999997 689999999999999999984 4555
No 34
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=25.12 E-value=42 Score=25.67 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHHHhcCCe-EEEeeecccccch---HHHHHHhhh-cCCceE--EEEEEecccHHHHHhccCCCCCHHHHHHHHHHcC
Q 035486 4 LRSLQRKSYTH-YFYEATVGAGLPI---ISTLRGLLE-TGDHIL--RIEGIFSGTLSYLFNSFVGTRSFSEVVAEAKEAG 76 (234)
Q Consensus 4 L~~la~~~g~~-~~yEasVgggiPi---i~~l~~~~~-~gd~I~--~i~GIlNGT~NyIL~~m~~g~~f~eal~eAq~lG 76 (234)
+.+.++.+|+. +.+= -|..+-|- +..+.+.+. .+..|. --.|. -.|+=|.+-.+..|.+.++|+++.++.|
T Consensus 64 ~~~~~~~~gi~~~~~i-Pv~~~~~~~~~~~~~~~~l~~~~~pVlvHC~sG~-Rs~~l~al~l~~~g~~~~~a~~~~~~~g 141 (156)
T 2f46_A 64 IKQWLEQAGVTGFHHQ-PVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFRRAAEGMPVDEIIRRAQAAG 141 (156)
T ss_dssp HHHHHGGGTCCEEEEC-CCCTTTCCHHHHHHHHHHHHTSCSSEEEECSSSH-HHHHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHhheEC-ccCCCCCCHHHHHHHHHHHHhCCCCEEEECCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 44567777877 4432 23322221 222333332 123332 22455 3345566666678999999999999998
Q ss_pred CC
Q 035486 77 YT 78 (234)
Q Consensus 77 ya 78 (234)
|.
T Consensus 142 ~~ 143 (156)
T 2f46_A 142 VN 143 (156)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 35
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=24.35 E-value=43 Score=24.44 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=23.2
Q ss_pred CCCChhhhHHHHHHHH---HhCCCCCCCCeee
Q 035486 85 DLSGTDVARKVIILAR---ESGLKLELSDLPV 113 (234)
Q Consensus 85 Dv~G~Daa~Kl~ILa~---~~g~~i~~~dv~~ 113 (234)
|+.-||+..-+-++.. .||+.++.+++..
T Consensus 55 dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~ 86 (105)
T 2lki_A 55 NIPELDSMAVVNVITALEEYFDFSVDDDEISA 86 (105)
T ss_dssp TBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCG
T ss_pred hcCcccHHHHHHHHHHHHHHhCCCcCHHHhhH
Confidence 5666799999988887 3999998777654
No 36
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=24.13 E-value=1.3e+02 Score=25.61 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+. ++.+...--.|.+..+++++..|. +|..++..++
T Consensus 108 ~~l~~~a~~~g~~-~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~i~~~~~ 156 (330)
T 3e9m_A 108 EELFAIAQEQGVF-LMEAQKSVFLPITQKVKATIQEGGLGEILWVQSVTA 156 (330)
T ss_dssp HHHHHHHHHTTCC-EEECCSGGGCHHHHHHHHHHHTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHcCCe-EEEEEhhhhCHHHHHHHHHHhCCCCCCeEEEEEEec
Confidence 5788899999985 477788889999999999986554 7888887764
No 37
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=23.44 E-value=1.3e+02 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=36.3
Q ss_pred hHHHHHHHhc-CCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEe
Q 035486 2 LKLRSLQRKS-YTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIF 48 (234)
Q Consensus 2 ~eL~~la~~~-g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIl 48 (234)
++|.++|+++ |+.+ +.+....-.|.+..+++.+..|. +|..++...
T Consensus 112 ~~l~~~a~~~~~~~~-~~~~~~r~~p~~~~~~~~i~~g~iG~i~~v~~~~ 160 (346)
T 3cea_A 112 DEMAKVIKSHPNQIF-QSGFMRRYDDSYRYAKKIVDNGDIGKIIYMRGYG 160 (346)
T ss_dssp HHHHHHHHTCTTSCE-ECCCGGGTCHHHHHHHHHHHTTTTCSEEEEEEEE
T ss_pred HHHHHHHHhCCCCeE-EEecccccCHHHHHHHHHHHcCCCCCeEEEEEEe
Confidence 4688889999 8876 67778888999999999886554 677777653
No 38
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.96 E-value=1.5e+02 Score=25.26 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +++...--.|.+..+++.+..|. +|..++.-+.
T Consensus 107 ~~l~~~a~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v~~~~~ 155 (334)
T 3ohs_X 107 REMVTEARSRGLFL-MEAIWTRFFPASEALRSVLAQGTLGDLRVARAEFG 155 (334)
T ss_dssp HHHHHHHHHTTCCE-EEECGGGGSHHHHHHHHHHHHTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCEE-EEEEhHhcCHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 57889999999865 57888888999999999886543 6777776554
No 39
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=22.50 E-value=18 Score=23.16 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=0.0
Q ss_pred EEEecccHHHHHhccC
Q 035486 45 EGIFSGTLSYLFNSFV 60 (234)
Q Consensus 45 ~GIlNGT~NyIL~~m~ 60 (234)
.||+||-++| ++.|+
T Consensus 1 ~~~~~~~~~~-~~~mN 15 (46)
T 3bz1_y 1 MGIFNGIIEF-LSNIN 15 (46)
T ss_dssp ----------------
T ss_pred CchhHhHHHH-HHcCC
Confidence 3899999998 66665
No 40
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=22.27 E-value=1.7e+02 Score=25.09 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=37.9
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ +.+...--.|.+..+++.+..|. +|..++...+
T Consensus 123 ~~l~~~a~~~g~~~-~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~~~ 171 (340)
T 1zh8_A 123 KKVVELSEKSEKTV-YIAENFRHVPAFWKAKELVESGAIGDPVFMNWQIW 171 (340)
T ss_dssp HHHHHHHHHCSSCE-EEECGGGGCHHHHHHHHHHHTTTTSSEEEEEEEEE
T ss_pred HHHHHHHHHcCCeE-EEEecccCCHHHHHHHHHHhcCCCCCcEEEEEEEe
Confidence 57889999999875 67788888999999999986653 6888876543
No 41
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=21.07 E-value=1.5e+02 Score=25.42 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=36.0
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEe
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIF 48 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIl 48 (234)
++|.++|+++|+.+ +.+...--.|.+..+++++..|. +|..++..+
T Consensus 106 ~~l~~~a~~~g~~~-~v~~~~r~~p~~~~~~~~i~~g~iG~i~~~~~~~ 153 (349)
T 3i23_A 106 EELFALGQEKGVVV-MPYQNRRFDGDYLAMKQVVEQGFLGEINEVETHI 153 (349)
T ss_dssp HHHHHHHHHTTCCE-EECCGGGGCHHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred HHHHHHHHHcCCeE-EEEecccCCHHHHHHHHHHhcCCCCCEEEEEEEe
Confidence 57889999999987 56767778899999999886542 677777544
No 42
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=21.00 E-value=63 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCC
Q 035486 65 FSEVVAEAKEAGYTEPDPRDDLS 87 (234)
Q Consensus 65 f~eal~eAq~lGyaE~DP~~Dv~ 87 (234)
+..+++.|.+.|+.+.||..++.
T Consensus 73 l~~~~~~A~~~~~i~~NP~~~v~ 95 (108)
T 2kob_A 73 ASQIFRLAIENRAIDFNPADYVR 95 (108)
T ss_dssp HHHHHHHHHHTTSSSSCGGGTCC
T ss_pred HHHHHHHHHHcCCcccCccccCc
Confidence 56788999999999999987664
No 43
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=20.76 E-value=78 Score=20.69 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=15.0
Q ss_pred ceEEEEEecccCCcCeEEEcCCCCh
Q 035486 188 DNIIAFTTKRYKEQPLIVRGPGAGA 212 (234)
Q Consensus 188 ~N~v~i~t~~~~~~~l~~~G~GAG~ 212 (234)
.|+|... + .+ .++++.|+|-|=
T Consensus 9 NNvvl~~-d-~~-~E~Iv~GkGIGF 30 (55)
T 1auu_A 9 HNAIVVK-D-QN-EEKILLGAGIAF 30 (55)
T ss_dssp SSEEEEE-C-SS-SEEEEECTTSST
T ss_pred CcEEEEe-c-CC-cEEEEEecccee
Confidence 4666533 3 33 599999999873
No 44
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.27 E-value=1.9e+02 Score=24.78 Aligned_cols=46 Identities=11% Similarity=0.339 Sum_probs=37.2
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEe
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIF 48 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIl 48 (234)
++|.++|+++|+.+ +.+-..--.|.+..+++.+..|. +|..++..+
T Consensus 107 ~~l~~~a~~~~~~~-~v~~~~R~~p~~~~~k~~i~~g~iG~i~~v~~~~ 154 (354)
T 3db2_A 107 QRIDQVIKETGVKF-LCGHSSRRLGALRKMKEMIDTKEIGEVSSIEAVF 154 (354)
T ss_dssp HHHHHHHHHHCCCE-EEECGGGGSHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred HHHHHHHHHcCCeE-EEeechhcCHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 57889999999876 67888888999999999986543 577777665
No 45
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=20.12 E-value=74 Score=20.80 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCCCCcCCCCC
Q 035486 65 FSEVVAEAKEAGYTEPDPRDDLS 87 (234)
Q Consensus 65 f~eal~eAq~lGyaE~DP~~Dv~ 87 (234)
+..++..|.+.|+.+.||..++.
T Consensus 74 l~~~~~~a~~~~~i~~nP~~~v~ 96 (103)
T 2oxo_A 74 LSDAFREAIAEGHITTNHVAATR 96 (103)
T ss_dssp HHHHHHHHHHTTSCSSCTTC---
T ss_pred HHHHHHHHHHcCCCCCChHhhcC
Confidence 55688899999999999987654
No 46
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.01 E-value=1.8e+02 Score=24.63 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCCeEEEeeecccccchHHHHHHhhhcCC--ceEEEEEEec
Q 035486 2 LKLRSLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--HILRIEGIFS 49 (234)
Q Consensus 2 ~eL~~la~~~g~~~~yEasVgggiPii~~l~~~~~~gd--~I~~i~GIlN 49 (234)
++|.++|+++|+.+ ..+-.-=--|.+..+++++..|. +|..|++-++
T Consensus 127 ~~l~~~a~~~~~~l-~v~~~~R~~p~~~~~k~~i~~G~iG~i~~i~~~~~ 175 (350)
T 4had_A 127 DAVIAARDRNKVVV-TEAYMITYSPVWQKVRSLIDEGAIGSLRHVQGAFT 175 (350)
T ss_dssp HHHHHHHHHHTCCE-EECCGGGGSHHHHHHHHHHHTTTTSSEEEEEEEEE
T ss_pred HHHHHHHHHcCCce-eEeeeeecCHHHHHhhHhhhcCCCCcceeeeEEEe
Confidence 57889999999876 45556667899999999987654 7888887653
Done!