BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035487
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
           Heterodimeric Human Soluble Guanylate Cyclase 1.
 pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
           Heterodimeric Human Soluble Guanylate Cyclase 1
          Length = 225

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 37  VTIPAVIVFGDSIVDAGNNNNLKTPAKCNFPPYG----RDFMGGVSTGRFSNGKVPSDLI 92
           V +P   +FG+++  A    +   P K N  P      +D  G V T R S  ++P +  
Sbjct: 124 VKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPR-SREELPPNFP 182

Query: 93  VEELGIKELLPAYLQ-----PNLQPEDLLTG 118
            E  GI   L AY Q     P  Q +D+  G
Sbjct: 183 SEIPGICHFLDAYQQGTNSKPCFQKKDVEDG 213


>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
           1
          Length = 235

 Score = 26.6 bits (57), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 11/54 (20%)

Query: 94  EELGIKELLPAYLQPNLQ------PED-----LLTGVTFASGGCGYDPLTTELA 136
           EE+   EL P +  P  Q      P+D         V FA  GCGY  L  EL+
Sbjct: 12  EEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELS 65


>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
           Sulfolbus Tokodaii Strain7
          Length = 373

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 93  VEELGIKELLPAYLQPNLQPEDLLTGVTFASGGCGYDP 130
           VEE+GIK L P  + PN+   D  + + F S   G++P
Sbjct: 292 VEEIGIKYLGPKGIYPNV---DFFSSIVFYS--LGFEP 324


>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
 pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
          Length = 492

 Score = 25.8 bits (55), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 44  VFGDSIVDAGNNNNLKTPAKCNFPPYGRDFMGGVSTGRFSNGKVPSD 90
           V GD+I+   N ++       NF   G+D+   ++ G + NG++  D
Sbjct: 436 VSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGELKMD 482


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,440
Number of Sequences: 62578
Number of extensions: 179218
Number of successful extensions: 282
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)