BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035488
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 45/313 (14%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPF 82
V++G G SGL+ L+ G+ ++IL+ WQ+ + L L P + +P +P
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPM 65
Query: 83 PEDFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSD-SSFCEV---------EY 132
P P + ++ A+Y++ + ++ I S F E ++
Sbjct: 66 PASQGPYPARAEVLAYL------AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQW 119
Query: 133 ICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVS 192
+ R ++ ATG E PE++GL+ F G +H+ Y + A + G RV ++G GNSG ++
Sbjct: 120 LARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQI- 178
Query: 193 LDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGN 252
L + A+ + + + L +V G+ F+ A K
Sbjct: 179 LAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWK--------------------- 217
Query: 253 VEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPGIKKFSPGKVELVNGQV 312
++ G + P P + PVLD A G + VP +FSP ++ +G
Sbjct: 218 AQQEG-REPDLPPGGFGDIVMVPPVLDARA-----RGVLAAVPPPARFSPTGMQWADGTE 271
Query: 313 LEIDSVVLATGYR 325
D+V+ TG+R
Sbjct: 272 RAFDAVIWCTGFR 284
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 43/220 (19%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPF 82
V+VGAG +GL ++QG+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 83 PEDFP------------------------RVPHQFDI--NPRFNETVQSAKYDETFGFWR 116
F V +FD+ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 117 IKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYR 175
++T + S R+LVVA G + P F+GL F G+++H + G +
Sbjct: 138 VRTDRGDEVS-------ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVV-RSSVHVLP 214
GKRV V+G G+SG++ S+ + A+ V RS+ + +P
Sbjct: 191 GKRVGVIGTGSSGIQ-SIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 43/220 (19%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPF 82
V+VGAG +GL ++QG+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 83 PEDFP------------------------RVPHQFDI--NPRFNETVQSAKYDETFGFWR 116
F V +FD+ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 117 IKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYR 175
++T + S R+LVVA G + P F+GL F G+++H + G +
Sbjct: 138 VRTDRGDEVS-------ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVV-RSSVHVLP 214
GKRV V+G G+SG++ S+ + A+ V RS+ + +P
Sbjct: 191 GKRVGVIGTGSSGIQ-SIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 43/220 (19%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPF 82
V+VGAG +GL ++QG+ E A+ + +W Y P C + + +
Sbjct: 25 VVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-------PGARCDVESIDY 77
Query: 83 PEDFP------------------------RVPHQFDI--NPRFNETVQSAKYDETFGFWR 116
F V +FD+ + RF+ V SA DE W
Sbjct: 78 SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWT 137
Query: 117 IKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYR 175
++T + S R+LVVA G + P F+GL F G+++H + G +
Sbjct: 138 VRTDRGDEVS-------ARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFT 190
Query: 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVV-RSSVHVLP 214
GKRV V+G G+SG++ S+ + A+ V RS+ + +P
Sbjct: 191 GKRVGVIGTGSSGIQ-SIPIIAEQAEQLFVFQRSANYSIP 229
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPK-QFCQ----- 76
++VGAG SGL L+ G ++E A + +W Y + + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEE 79
Query: 77 -LPNFPFPEDFPRVPH----------QFDINP--RFNETVQSAKYDETFGFWRIKTISSS 123
L + + E + P +FD+ F+ TV +A +DE W + T
Sbjct: 80 VLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD 139
Query: 124 DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYRGKRVLVV 182
R+L++A+G+ + P F GL+ F GN+ H G++ + G+RV V+
Sbjct: 140 -------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 183 GCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLP 214
G G+SG++VS + A+ + R+ +P
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPK-QFCQ----- 76
++VGAG SGL L+ G ++E A + +W Y + + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEE 79
Query: 77 -LPNFPFPEDFPRVPH----------QFDINP--RFNETVQSAKYDETFGFWRIKTISSS 123
L + + E + P +FD+ F+ TV +A +DE W + T
Sbjct: 80 VLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD 139
Query: 124 DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYRGKRVLVV 182
R+L++A+G+ + P F GL+ F GN+ H G++ + G+RV V+
Sbjct: 140 -------RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 183 GCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLP 214
G G+SG++VS + A+ + R+ +P
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPK-QFCQ----- 76
++VGAG SGL L+ G ++E A + +W Y + + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEE 79
Query: 77 -LPNFPFPEDFPRVPH----------QFDINP--RFNETVQSAKYDETFGFWRIKTISSS 123
L + + E + P +FD+ F+ TV +A +DE W + T
Sbjct: 80 VLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD 139
Query: 124 DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYRGKRVLVV 182
R+L++A+G+ + P F GL+ F GN+ H G++ + G+RV V+
Sbjct: 140 RIR-------ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 183 GCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLP 214
G G+SG++VS + A+ + R+ +P
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPK-QFCQ----- 76
++VGAG SGL L+ G ++E A + +W Y + + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCYSFSEE 79
Query: 77 -LPNFPFPEDFPRVPH----------QFDINP--RFNETVQSAKYDETFGFWRIKTISSS 123
L + + E + P +FD+ F+ TV +A +DE W + T
Sbjct: 80 VLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD 139
Query: 124 DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY-KSGASYRGKRVLVV 182
R+L++A+G+ + P F GL+ F GN+ H G++ + G+RV V+
Sbjct: 140 RIR-------ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVI 192
Query: 183 GCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLP 214
G G+SG++VS + A+ + R+ +P
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFVFQRTPHFAVP 224
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQ------ 76
V++GAG +G+ A + G+ + +E + W Y +L
Sbjct: 13 VVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKG 72
Query: 77 -LPNFPFPEDFPRVPHQF----------DINP--RFNETVQSAKYDETFGFWRIKTISSS 123
+P + + E+F P D+ RFN V +A+Y E W + T+ +
Sbjct: 73 IIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV-TLDN- 130
Query: 124 DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS-------GASYRG 176
E CR+L+ ATG + P+ +G+ F+G H+ + + G + G
Sbjct: 131 -----EEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTG 185
Query: 177 KRVLVVGCGNSGMEV 191
KRV V+G G +G+++
Sbjct: 186 KRVGVIGTGATGVQI 200
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 33/237 (13%)
Query: 23 VIVGAGPSGLAVAAGLKNQ-GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFP 81
V++GAG G+ L ++ G+ + ++A+ W ++R L L F
Sbjct: 45 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY---WNRYPGALSDTESHLYRFS 101
Query: 82 FPEDFPR--------------------VPHQFDINP--RFNETVQSAKYDETFGFWRIKT 119
F D + V +FD+ +F V SA Y + W + T
Sbjct: 102 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 161
Query: 120 ISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRV 179
EV Y +++V A G + P GL FEG +H + G S G+RV
Sbjct: 162 ------DHGEV-YRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRV 214
Query: 180 LVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLW 236
V+G G++G +V L ++ VR+ + +P + Q+A + Y +W
Sbjct: 215 GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 271
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 33/237 (13%)
Query: 23 VIVGAGPSGLAVAAGLKNQ-GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFP 81
V++GAG G+ L ++ G+ + ++A+ W ++R L L F
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY---WNRYPGALSDTESHLYRFS 68
Query: 82 FPEDFPR--------------------VPHQFDINP--RFNETVQSAKYDETFGFWRIKT 119
F D + V +FD+ +F V SA Y + W + T
Sbjct: 69 FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT 128
Query: 120 ISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRV 179
EV Y +++V A G + P GL FEG +H + G S G+RV
Sbjct: 129 ------DHGEV-YRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRV 181
Query: 180 LVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLW 236
V+G G++G +V L ++ VR+ + +P + Q+A + Y +W
Sbjct: 182 GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 238
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L + PK+ + ++ F E F + + RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + E+ ++V TG + PEFEG + F G +
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG +S ++ + AK
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAK 222
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L + PK+ + ++ F E F + + RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + E+ ++V TG + PEFEG + F G +
Sbjct: 126 VRHVEFNEDSQTFTVTVQDHTTDTIYSEEF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 183
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG S ++ + AK
Sbjct: 184 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L + PK+ + ++ F E F + + RFN
Sbjct: 71 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + + ++V TG + PEFEG + F G +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDHTTDTIYSAAF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG S ++ + AK
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQH 157
RFN V+ +++E + + + + E+ ++V TG + PEFEG +
Sbjct: 121 RFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF--DYVVCCTGHFSTPYVPEFEGFEK 178
Query: 158 FEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
F G ++HA D++ ++ K VL+VG S ++ + AK
Sbjct: 179 FGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L PK+ + ++ F E F + + RFN
Sbjct: 71 MYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + + ++V TG + PEFEG + F G +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDHTTDTIYSAAF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG S ++ + AK
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L PK+ + ++ F E F + + RFN
Sbjct: 71 MYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + + ++V TG + PEFEG + F G +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDHTTDTIYSAAF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG S ++ + AK
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 42/219 (19%)
Query: 23 VIVGAGPSGLAV-----AAGLKNQGVP-FIILERANCIASLW---------------QNR 61
I+GAGPSG+A +A K +P + E+ W +
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 62 TYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-------------------RFNET 102
Y L PK+ + ++ F E F + + RFN
Sbjct: 71 MYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 103 VQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162
V+ +++E + + + + + ++V TG + PEFEG + F G +
Sbjct: 131 VRHVEFNEDSQTFTVTVQDHTTDTIYSAAF--DYVVCCTGHFSTPYVPEFEGFEKFGGRI 188
Query: 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK 201
+HA D++ ++ K VL+VG S ++ + AK
Sbjct: 189 LHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 131 EYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGME 190
EY C L++ATG +A + E + F+G + A G YR ++V V+G GN+ +E
Sbjct: 102 EYTCDALIIATGASARYLGLPSE--EAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVE 159
Query: 191 VSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241
+L L N + S VH++ R + F+ +++K L+DK+
Sbjct: 160 EALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLMDKV 194
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 131 EYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGME 190
EY C L++ATG +A + E + F+G + A G YR ++V V+G GN+ +E
Sbjct: 102 EYTCDALIIATGASARYLGLPSE--EAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVE 159
Query: 191 VSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241
+L L N + S VH++ R + F+ +++K L+DK+
Sbjct: 160 EALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLMDKV 194
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 131 EYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGME 190
EY C L++ATG +A + E + F+G + A G YR ++V V+G GN+ +E
Sbjct: 102 EYTCDALIIATGASARYLGLPSE--EAFKGRGVSASATCDGFFYRNQKVAVIGGGNTAVE 159
Query: 191 VSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241
+L L N + S VH++ R + F+ +++K L+DK+
Sbjct: 160 EALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLMDKV 194
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 131 EYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGME 190
EY C L++ATG +A + E + F+G + A G YR ++V V+G GN+ +E
Sbjct: 102 EYTCDALIIATGASARYLGLPSE--EAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE 159
Query: 191 VSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241
+L L N + S VH++ R + F+ +++K L+DK+
Sbjct: 160 EALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLMDKV 194
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 131 EYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGME 190
EY C L++ATG +A + E + F+G + A G YR ++V V+G GN+ +E
Sbjct: 102 EYTCDALIIATGASARYLGLPSE--EAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE 159
Query: 191 VSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241
+L L N + S VH++ R + F+ +++K L+DK+
Sbjct: 160 EALYLSN--------IASEVHLIHR----RDGFRAEKILIK----RLMDKV 194
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
Query: 23 VIVGAGPSGL--AVAAGLKNQGVPFI--ILERANCIASLW-QNRTYDRLKLHLPKQFCQL 77
I+G GP+G+ A G+ N I + + +A+L+ + YD F ++
Sbjct: 18 TIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYD------VAGFPEV 71
Query: 78 PNFPFPEDFPRVPHQFDINPRFNETV-QSAKYDETFGFWRIKTISSSDSSFCEVEYICRW 136
P E +++ + NETV + K D+ G + +T + + Y R
Sbjct: 72 PAIDLVESLWAQAERYNPDVVLNETVTKYTKLDD--GTFETRTNTGN-------VYRSRA 122
Query: 137 LVVATGENA--EKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLD 194
+++A G A + P+ + H G+ ++ KS ++GKRV++VG G+S ++ ++
Sbjct: 123 VLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVG 181
Query: 195 LCNHNAKPSMVVR 207
L + A ++V R
Sbjct: 182 LIKNAASVTLVHR 194
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 32/196 (16%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIIL----ERANCIASLWQNRTYDRLKLHLPKQFCQLP 78
+IVGAGP+GL + +G+ F + E + +L+ K +
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPE-----------KYIYDVA 57
Query: 79 NFP--FPEDFPR--VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYIC 134
FP + +D + V NP ++ ++ + +++ T + Y
Sbjct: 58 GFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGN-------AYTA 110
Query: 135 RWLVVATGENAEKIEPE---FEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEV 191
+ +++A G A EP G + FEG ++ KS A ++GKRVL+VG G+S ++
Sbjct: 111 KAVIIAAGVGA--FEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDW 167
Query: 192 SLDLCNHNAKPSMVVR 207
+L+L + + +++ R
Sbjct: 168 ALNLLDTARRITLIHR 183
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL-WQNRTYDRLKLHLPKQFCQLPNFP 81
VI+G GP+GL A + +ILE+ + W ++ NFP
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSE---------------EVENFP 56
Query: 82 -FPE-----DFPRVPHQ----FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVE 131
FPE + + HQ F +E VQ ++D T + T+ + E
Sbjct: 57 GFPEPIAGMELAQRMHQQAEKFGAKVEMDE-VQGVQHDATSHPYPF-TVRGYNG-----E 109
Query: 132 YICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEV 191
Y + +++ATG + K+ G +F G + G Y+GK+V+V+G G++ +E
Sbjct: 110 YRAKAVILATGADPRKLG--IPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEE 167
Query: 192 SLDLCNHNAKPSMVVR 207
+ L + +++ R
Sbjct: 168 GMFLTKFADEVTVIHR 183
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC 75
VIVGAGPSGL A LK G+ +LE + + T D L + Q+
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWV 63
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 286 IRSGDIKVVPGIKKFSPGKVELVNGQVLEIDSVVLATGYRSNVPSWLKENEFFSENGIPK 345
IR+G ++V + + +VEL G+VLE D V++A G R EN S + +
Sbjct: 225 IRTG-VRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGR 283
Query: 346 NPFPNGWKGKT-GLYAVGFTKRG 367
P + + +YA+G RG
Sbjct: 284 IPVDEHLRTRVPHIYAIGDVVRG 306
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC 75
IVGAGPSGLA A L+ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC 75
IVGAGPSGLA A L+ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC 75
IVGAGPSGLA A L+ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 170 SGASYRGKRVLVVGCGNSGMEVSLDLC 196
G ++GKRV V+G GNSG+E ++DL
Sbjct: 349 DGPLFKGKRVAVIGGGNSGVEAAIDLA 375
>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
pdb|3ULK|B Chain B, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph
And Mg2+
Length = 491
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 163 MHAGDYKSGASY-RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKS 221
M ++ GASY +GK+V++VGCG G+ L++ + S +R R K+
Sbjct: 23 MGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA 82
Query: 222 T 222
T
Sbjct: 83 T 83
>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|B Chain B, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|C Chain C, Escherichia Coli Ketol-Acid Reductoisomerase
pdb|1YRL|D Chain D, Escherichia Coli Ketol-Acid Reductoisomerase
Length = 491
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 163 MHAGDYKSGASY-RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKS 221
M ++ GASY +GK+V++VGCG G+ L++ + S +R R K+
Sbjct: 23 MGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA 82
Query: 222 T 222
T
Sbjct: 83 T 83
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 170 SGASYRGKRVLVVGCGNSGMEVSLDLC 196
G ++GKRV V+G GNSG+E ++DL
Sbjct: 138 DGPLFKGKRVAVIGGGNSGVEAAIDLA 164
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 46/191 (24%)
Query: 23 VIVGAGPSGLAVA--AGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNF 80
I+G GP GL A G++ V I LP+ QL
Sbjct: 11 TIIGGGPVGLFTAFYGGMRQASVKII---------------------ESLPQLGGQLSAL 49
Query: 81 PFPED-------FPRVPHQFDINPRFNETVQSAKYDETFGFWR-IKTIS-SSDSSF---- 127
+PE FP++ Q IN N Q AK+D+T + ++++ +D F
Sbjct: 50 -YPEKYIYDVAGFPKIRAQELIN---NLKEQMAKFDQTICLEQAVESVEKQADGVFKLVT 105
Query: 128 CEVEYICRWLVVATGENAEKIEP-EFEGLQHFEGNVMH--AGDYKSGASYRGKRVLVVGC 184
E + + +++ G A K E E + +EG +H D + + G+RV ++G
Sbjct: 106 NEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQK---FAGRRVAILGG 162
Query: 185 GNSGMEVSLDL 195
G+S ++ +L L
Sbjct: 163 GDSAVDWALML 173
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 104 QSAKYDETFGFWRIKTISSSDS----SFCEVEYICRWLVVATGENAEKIEPEFEGLQHFE 159
+ K+ + + IK++ +F E + +++ATG +KI G Q
Sbjct: 71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIG--VPGEQELG 128
Query: 160 GNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVR 207
G + GA ++ KR+ V+G G+S +E L K ++V R
Sbjct: 129 GRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHR 176
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERAN 52
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERTT 35
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 286 IRSGDIKVVPGIKKFSPGKVE--LVNGQVLE-IDSVVLATGYRSNVP 329
I++ ++ VP I KF P E L G+VL ID V+ TGY +VP
Sbjct: 251 IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 297
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 290 DIKVVPGIKKFSPGKVELVNGQVLEIDSVVLATGYRSNVPS------WLKENEFFSENGI 343
++ V+ G +F K VNG+ + D +++ATG R + P + + FF+ +
Sbjct: 107 NVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPAL 166
Query: 344 PK 345
P+
Sbjct: 167 PE 168
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 286 IRSGDIKVVPGIKKFSPGKVE--LVNGQVLE-IDSVVLATGYRSNVP 329
I++ ++ VP I KF P E L G+VL ID V+ TGY +VP
Sbjct: 249 IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 295
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 290 DIKVVPGIKKFSPGKVELVNGQVLEIDSVVLATGYRSNVPS------WLKENEFFSENGI 343
++ V+ G +F K VNG+ + D +++ATG R + P + + FF+ +
Sbjct: 107 NVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPAL 166
Query: 344 PK 345
P+
Sbjct: 167 PE 168
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC 75
IVGAG SGLA A L+ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
I+GAGPSGL + L G+ +ILER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILER 50
++VGAGP+GL +A L+ GV ++LE+
Sbjct: 16 IVVGAGPAGLMLAGELRLGGVDVMVLEQ 43
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILERAN 52
++GAG GLA+A L+ G+P ++LE+ +
Sbjct: 5 TVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 23 VIVGAGPSGLAVAAGLKNQGVPFIILE-------RANCIASLWQNRTYDRLKLHLPKQFC 75
++VGAGPSGL A L +G ++ E R ++L + R+K +
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLA 454
Query: 76 QLPNFPFPEDFP 87
+LPN + P
Sbjct: 455 ELPNVEIYRESP 466
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 133 ICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVS 192
+ + ++V TG +K F+G F G + G Y+ K V V+G G++ +E +
Sbjct: 106 LAKAVIVCTGSAPKK--AGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA 163
Query: 193 LDLCNHNAKPSMVVR 207
L L N +K ++ R
Sbjct: 164 LYLANICSKIYLIHR 178
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 11 FLSNRCIWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51
+LS + +I+G+G S A+A GLK QG+ +L R+
Sbjct: 110 YLSLKHQNYQNALILGSGGSAKALACGLKKQGLKVSVLNRS 150
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 271 NEGKTPVLDIGALQKIRSGDIKVVPGIKKFSPGKVELVNGQVLEIDSVVLATGYRS 326
+G L G ++ +KVV G K GK V+GQ ++ + ++LATG S
Sbjct: 91 KDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSS 146
>pdb|1NKW|P Chain P, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|P Chain P, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|P Chain P, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1PNU|P Chain P, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|P Chain P, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1SM1|P Chain P, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1VOR|S Chain S, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|S Chain S, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|S Chain S, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|S Chain S, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|S Chain S, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1XBP|P Chain P, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|1YL3|2 Chain 2, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|V Chain V, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|V Chain V, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|V Chain V, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2ZJP|O Chain O, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|O Chain O, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|O Chain O, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|O Chain O, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|O Chain O, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|O Chain O, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|O Chain O, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 100
Score = 28.1 bits (61), Expect = 9.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 142 GENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYR 175
GE+A K + E ++H G ++ YKSG YR
Sbjct: 48 GEDAGKYTVQAEVVEHGRGKKIYIRKYKSGVQYR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,671,164
Number of Sequences: 62578
Number of extensions: 549026
Number of successful extensions: 2072
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1920
Number of HSP's gapped (non-prelim): 145
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)