Query 035488
Match_columns 408
No_of_seqs 172 out of 2076
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 6.2E-43 1.3E-47 338.1 19.3 355 20-387 2-397 (531)
2 PLN02172 flavin-containing mon 100.0 3.8E-37 8.3E-42 294.3 27.1 296 19-387 10-353 (461)
3 COG0492 TrxB Thioredoxin reduc 100.0 3.1E-35 6.7E-40 264.2 20.5 280 18-388 2-302 (305)
4 TIGR01292 TRX_reduct thioredox 100.0 2.4E-35 5.2E-40 271.0 19.4 284 20-386 1-300 (300)
5 COG1249 Lpd Pyruvate/2-oxoglut 100.0 3.7E-35 8E-40 276.4 20.1 289 18-384 3-334 (454)
6 COG2072 TrkA Predicted flavopr 100.0 4.5E-33 9.7E-38 265.4 30.5 340 19-367 8-389 (443)
7 PRK10262 thioredoxin reductase 100.0 2.4E-34 5.2E-39 266.2 20.8 284 19-389 6-317 (321)
8 COG1252 Ndh NADH dehydrogenase 100.0 1.4E-34 3.1E-39 265.5 16.2 293 18-394 2-339 (405)
9 PRK13512 coenzyme A disulfide 100.0 5E-34 1.1E-38 274.1 20.7 284 20-384 2-311 (438)
10 TIGR03140 AhpF alkyl hydropero 100.0 1.1E-33 2.4E-38 276.5 19.9 283 18-388 211-514 (515)
11 PRK15317 alkyl hydroperoxide r 100.0 1.4E-33 3.1E-38 276.1 20.3 284 19-389 211-514 (517)
12 PLN02507 glutathione reductase 100.0 7.3E-33 1.6E-37 269.0 21.2 291 17-384 23-362 (499)
13 TIGR01421 gluta_reduc_1 glutat 100.0 5.7E-33 1.2E-37 267.3 20.1 283 19-384 2-327 (450)
14 PRK05249 soluble pyridine nucl 100.0 7.5E-33 1.6E-37 268.8 20.5 292 18-385 4-335 (461)
15 PRK06116 glutathione reductase 100.0 9.7E-33 2.1E-37 266.8 20.7 283 19-384 4-327 (450)
16 TIGR01424 gluta_reduc_2 glutat 100.0 6.4E-33 1.4E-37 267.2 17.0 285 19-384 2-325 (446)
17 TIGR03143 AhpF_homolog putativ 100.0 1.7E-32 3.7E-37 270.0 19.2 283 19-391 4-313 (555)
18 PRK08010 pyridine nucleotide-d 100.0 3.4E-32 7.3E-37 262.4 20.4 290 18-384 2-316 (441)
19 PRK14989 nitrite reductase sub 100.0 1.6E-32 3.6E-37 278.8 18.8 282 20-385 4-310 (847)
20 PTZ00318 NADH dehydrogenase-li 100.0 7.4E-33 1.6E-37 264.9 15.0 293 17-390 8-351 (424)
21 PRK04965 NADH:flavorubredoxin 100.0 1.8E-32 3.8E-37 259.2 16.9 276 20-386 3-303 (377)
22 TIGR02053 MerA mercuric reduct 100.0 3.5E-32 7.7E-37 263.9 19.3 287 20-385 1-329 (463)
23 PRK06370 mercuric reductase; V 100.0 6.5E-32 1.4E-36 261.9 19.9 286 19-385 5-334 (463)
24 KOG1399 Flavin-containing mono 100.0 1.7E-31 3.6E-36 250.5 21.6 298 16-387 3-334 (448)
25 PRK14694 putative mercuric red 100.0 1.4E-31 3E-36 259.6 21.4 290 19-385 6-335 (468)
26 PRK09754 phenylpropionate diox 100.0 4.2E-32 9.1E-37 257.9 17.2 282 19-385 3-309 (396)
27 PRK06416 dihydrolipoamide dehy 100.0 1.5E-31 3.4E-36 259.5 21.2 289 19-384 4-333 (462)
28 PRK06467 dihydrolipoamide dehy 100.0 1.7E-31 3.8E-36 258.5 21.1 290 19-385 4-337 (471)
29 TIGR01423 trypano_reduc trypan 100.0 1.9E-31 4.2E-36 257.4 19.7 290 19-384 3-350 (486)
30 PRK14727 putative mercuric red 100.0 6.2E-31 1.3E-35 255.4 23.1 296 18-385 15-346 (479)
31 PRK07251 pyridine nucleotide-d 100.0 1.4E-31 3E-36 257.9 18.0 292 19-385 3-316 (438)
32 PRK13748 putative mercuric red 100.0 5.9E-31 1.3E-35 261.6 22.6 289 19-384 98-427 (561)
33 PRK06115 dihydrolipoamide dehy 100.0 5.1E-31 1.1E-35 255.1 21.4 291 18-385 2-338 (466)
34 PRK09564 coenzyme A disulfide 100.0 2.5E-31 5.4E-36 257.2 19.2 288 21-385 2-317 (444)
35 PRK12831 putative oxidoreducta 100.0 7.3E-32 1.6E-36 259.6 15.2 273 18-388 139-462 (464)
36 PLN02546 glutathione reductase 100.0 8.9E-32 1.9E-36 262.4 15.4 286 18-385 78-413 (558)
37 PTZ00058 glutathione reductase 100.0 5.4E-31 1.2E-35 256.7 20.3 294 18-385 47-432 (561)
38 PRK07818 dihydrolipoamide dehy 100.0 7.3E-31 1.6E-35 254.6 21.1 294 19-385 4-336 (466)
39 PRK07845 flavoprotein disulfid 100.0 1.6E-30 3.4E-35 251.7 22.8 295 19-385 1-337 (466)
40 PRK06292 dihydrolipoamide dehy 100.0 6.5E-31 1.4E-35 255.2 19.8 287 17-385 1-331 (460)
41 PRK05976 dihydrolipoamide dehy 100.0 2.1E-30 4.5E-35 251.8 22.1 294 19-384 4-342 (472)
42 PRK07846 mycothione reductase; 100.0 9E-31 2E-35 251.9 19.1 283 20-385 2-325 (451)
43 TIGR01316 gltA glutamate synth 100.0 2.7E-31 5.9E-36 255.4 15.3 272 18-386 132-449 (449)
44 PRK06327 dihydrolipoamide dehy 100.0 2.4E-30 5.3E-35 251.1 21.6 294 19-385 4-347 (475)
45 TIGR01350 lipoamide_DH dihydro 100.0 3E-30 6.5E-35 250.7 21.1 289 20-385 2-332 (461)
46 TIGR01438 TGR thioredoxin and 100.0 5E-30 1.1E-34 248.2 22.5 289 19-384 2-343 (484)
47 PTZ00052 thioredoxin reductase 100.0 1.7E-30 3.8E-35 252.6 19.2 291 19-384 5-340 (499)
48 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-30 2.5E-35 265.8 17.8 279 22-385 1-301 (785)
49 TIGR03169 Nterm_to_SelD pyridi 100.0 1.1E-30 2.5E-35 246.1 13.8 287 21-393 1-317 (364)
50 PRK09853 putative selenate red 100.0 2.8E-30 6E-35 260.8 17.1 282 18-387 538-842 (1019)
51 PRK11749 dihydropyrimidine deh 100.0 1.6E-30 3.4E-35 251.5 14.1 275 19-389 140-454 (457)
52 PRK12779 putative bifunctional 100.0 4.3E-30 9.2E-35 263.5 17.1 272 19-389 306-629 (944)
53 PTZ00153 lipoamide dehydrogena 100.0 2E-29 4.4E-34 248.7 19.1 192 130-385 271-495 (659)
54 KOG0405 Pyridine nucleotide-di 100.0 2.3E-29 5E-34 218.4 16.7 293 19-385 20-350 (478)
55 PRK06912 acoL dihydrolipoamide 100.0 5.6E-29 1.2E-33 240.7 20.5 286 21-384 2-329 (458)
56 TIGR03452 mycothione_red mycot 100.0 3.9E-29 8.4E-34 240.9 19.2 283 19-385 2-328 (452)
57 PRK12778 putative bifunctional 100.0 1.4E-29 3E-34 258.2 15.6 271 18-388 430-751 (752)
58 PRK12814 putative NADPH-depend 100.0 2.9E-29 6.3E-34 250.9 15.3 272 19-390 193-504 (652)
59 TIGR03315 Se_ygfK putative sel 100.0 5.4E-29 1.2E-33 252.8 16.3 286 19-386 537-839 (1012)
60 PRK12770 putative glutamate sy 100.0 7.8E-29 1.7E-33 231.8 16.2 286 19-388 18-351 (352)
61 KOG1336 Monodehydroascorbate/f 100.0 2.2E-28 4.7E-33 222.7 18.3 266 19-369 74-354 (478)
62 KOG0404 Thioredoxin reductase 100.0 1.6E-28 3.4E-33 200.6 15.0 283 19-385 8-317 (322)
63 PRK12775 putative trifunctiona 100.0 4.5E-28 9.7E-33 250.9 16.8 274 19-390 430-758 (1006)
64 PRK12769 putative oxidoreducta 100.0 3.8E-28 8.2E-33 244.0 15.6 276 18-388 326-653 (654)
65 PRK12810 gltD glutamate syntha 100.0 2.6E-28 5.7E-33 236.3 13.6 281 19-389 143-467 (471)
66 TIGR01318 gltD_gamma_fam gluta 100.0 1.1E-27 2.4E-32 231.1 15.2 275 18-387 140-466 (467)
67 PF13738 Pyr_redox_3: Pyridine 99.9 5.9E-27 1.3E-31 202.6 14.3 177 23-211 1-202 (203)
68 PRK12809 putative oxidoreducta 99.9 6.2E-27 1.3E-31 234.2 15.5 275 19-388 310-636 (639)
69 COG3634 AhpF Alkyl hydroperoxi 99.9 6.1E-27 1.3E-31 203.4 12.0 285 18-386 210-514 (520)
70 KOG1335 Dihydrolipoamide dehyd 99.9 4.5E-26 9.7E-31 200.5 16.0 299 19-385 39-377 (506)
71 TIGR03385 CoA_CoA_reduc CoA-di 99.9 2.7E-26 5.8E-31 220.8 15.3 274 33-385 1-304 (427)
72 PRK13984 putative oxidoreducta 99.9 1.8E-26 3.9E-31 230.6 12.2 270 18-388 282-603 (604)
73 PRK12771 putative glutamate sy 99.9 4.8E-26 1E-30 225.4 13.5 271 19-390 137-447 (564)
74 TIGR01317 GOGAT_sm_gam glutama 99.9 2.4E-25 5.3E-30 215.7 17.3 303 19-390 143-482 (485)
75 KOG4716 Thioredoxin reductase 99.9 3.5E-25 7.5E-30 191.9 14.7 310 17-384 17-364 (503)
76 TIGR01372 soxA sarcosine oxida 99.9 7.5E-25 1.6E-29 228.4 20.1 280 19-388 163-473 (985)
77 COG1251 NirB NAD(P)H-nitrite r 99.9 1.7E-25 3.7E-30 213.0 13.6 285 19-388 3-309 (793)
78 KOG2495 NADH-dehydrogenase (ub 99.9 3.6E-25 7.9E-30 198.0 13.9 295 18-389 54-399 (491)
79 PLN02852 ferredoxin-NADP+ redu 99.9 4.2E-24 9E-29 203.9 19.2 319 19-388 26-423 (491)
80 PF13434 K_oxygenase: L-lysine 99.9 1.8E-24 4E-29 199.1 8.9 192 19-218 2-233 (341)
81 COG3486 IucD Lysine/ornithine 99.9 4.4E-21 9.6E-26 171.7 19.2 315 19-365 5-386 (436)
82 KOG0399 Glutamate synthase [Am 99.8 2E-21 4.4E-26 190.2 4.8 309 18-388 1784-2121(2142)
83 COG0446 HcaD Uncharacterized N 99.8 1.3E-19 2.8E-24 174.3 16.0 276 22-384 1-309 (415)
84 KOG1346 Programmed cell death 99.8 1.1E-19 2.5E-24 161.9 10.5 293 20-387 179-521 (659)
85 COG0493 GltD NADPH-dependent g 99.8 9.3E-20 2E-24 172.4 8.7 289 19-385 123-449 (457)
86 KOG1800 Ferredoxin/adrenodoxin 99.8 6.2E-18 1.4E-22 149.5 14.7 145 17-196 18-179 (468)
87 PRK06567 putative bifunctional 99.8 6.2E-18 1.4E-22 169.6 13.4 319 18-392 382-775 (1028)
88 PTZ00188 adrenodoxin reductase 99.7 1.2E-16 2.7E-21 150.3 17.9 43 19-61 39-82 (506)
89 COG1148 HdrA Heterodisulfide r 99.7 2.9E-16 6.4E-21 143.1 16.4 39 19-57 124-162 (622)
90 COG4529 Uncharacterized protei 99.6 6.4E-14 1.4E-18 129.6 20.1 350 19-383 1-459 (474)
91 PF07992 Pyr_redox_2: Pyridine 99.6 4.2E-18 9.1E-23 146.9 -7.3 125 21-155 1-130 (201)
92 PRK09897 hypothetical protein; 99.6 6.8E-14 1.5E-18 135.7 18.3 178 19-210 1-246 (534)
93 KOG2755 Oxidoreductase [Genera 99.5 2.2E-14 4.8E-19 120.9 8.8 304 22-366 2-321 (334)
94 KOG3851 Sulfide:quinone oxidor 99.5 1.7E-13 3.8E-18 118.8 11.6 290 17-392 37-366 (446)
95 COG2081 Predicted flavoprotein 99.5 1.9E-14 4.2E-19 129.7 4.2 122 17-147 1-169 (408)
96 PF03486 HI0933_like: HI0933-l 99.3 5.8E-12 1.3E-16 118.7 6.4 120 20-147 1-168 (409)
97 PRK05329 anaerobic glycerol-3- 99.1 2.6E-10 5.6E-15 108.0 10.4 34 19-52 2-35 (422)
98 TIGR02032 GG-red-SF geranylger 99.1 9E-11 1.9E-15 107.4 6.8 117 20-145 1-148 (295)
99 PRK04176 ribulose-1,5-biphosph 99.1 1.1E-10 2.3E-15 103.8 6.5 126 19-144 25-172 (257)
100 COG1635 THI4 Ribulose 1,5-bisp 99.1 4.7E-10 1E-14 93.0 8.9 125 19-143 30-176 (262)
101 COG0644 FixC Dehydrogenases (f 99.1 5.9E-10 1.3E-14 106.2 10.4 120 18-145 2-152 (396)
102 COG3380 Predicted NAD/FAD-depe 99.1 9.4E-11 2E-15 100.0 3.9 114 20-142 2-157 (331)
103 PF13454 NAD_binding_9: FAD-NA 99.1 5E-10 1.1E-14 91.9 7.9 112 23-143 1-155 (156)
104 TIGR00292 thiazole biosynthesi 99.1 6.6E-10 1.4E-14 98.4 8.9 125 19-143 21-168 (254)
105 PRK08013 oxidoreductase; Provi 99.0 1.3E-09 2.9E-14 104.1 11.4 36 18-53 2-37 (400)
106 PRK09126 hypothetical protein; 99.0 2.6E-09 5.7E-14 102.0 11.8 36 18-53 2-37 (392)
107 TIGR02023 BchP-ChlP geranylger 99.0 2.8E-09 6.1E-14 101.4 11.6 121 20-146 1-156 (388)
108 PRK06834 hypothetical protein; 99.0 2.4E-09 5.1E-14 104.5 11.2 121 17-146 1-157 (488)
109 PRK07364 2-octaprenyl-6-methox 99.0 3.4E-09 7.3E-14 102.0 11.8 123 19-147 18-183 (415)
110 PRK06184 hypothetical protein; 99.0 4.2E-09 9.1E-14 103.7 12.7 123 17-145 1-168 (502)
111 PRK06847 hypothetical protein; 99.0 5.1E-09 1.1E-13 99.4 12.8 120 19-147 4-165 (375)
112 PRK10157 putative oxidoreducta 99.0 5.1E-09 1.1E-13 100.7 12.8 37 19-55 5-41 (428)
113 PRK05868 hypothetical protein; 99.0 5.9E-09 1.3E-13 98.5 12.6 120 19-147 1-162 (372)
114 PRK08244 hypothetical protein; 99.0 4.4E-09 9.5E-14 103.4 11.6 120 20-145 3-159 (493)
115 PLN02463 lycopene beta cyclase 99.0 1.6E-09 3.5E-14 103.8 8.2 119 17-145 26-169 (447)
116 PF01946 Thi4: Thi4 family; PD 99.0 6.9E-10 1.5E-14 92.6 4.8 123 19-143 17-163 (230)
117 PRK06183 mhpA 3-(3-hydroxyphen 99.0 9.4E-09 2E-13 102.0 13.6 125 18-147 9-176 (538)
118 PRK10015 oxidoreductase; Provi 98.9 7.3E-09 1.6E-13 99.5 12.1 37 19-55 5-41 (429)
119 PF12831 FAD_oxidored: FAD dep 98.9 4.6E-10 9.9E-15 107.8 3.8 118 21-143 1-148 (428)
120 PRK08773 2-octaprenyl-3-methyl 98.9 6.1E-09 1.3E-13 99.4 11.5 119 18-145 5-169 (392)
121 PRK07236 hypothetical protein; 98.9 2.9E-09 6.3E-14 101.3 9.2 122 17-147 4-156 (386)
122 PRK08849 2-octaprenyl-3-methyl 98.9 4.2E-09 9E-14 100.2 10.1 34 19-52 3-36 (384)
123 PRK07190 hypothetical protein; 98.9 3.2E-09 7E-14 103.4 9.0 118 19-145 5-165 (487)
124 PRK07333 2-octaprenyl-6-methox 98.9 3.9E-09 8.4E-14 101.2 9.2 119 19-146 1-168 (403)
125 PRK11445 putative oxidoreducta 98.9 5.1E-09 1.1E-13 98.2 9.6 121 19-146 1-158 (351)
126 PRK08850 2-octaprenyl-6-methox 98.9 8.1E-09 1.8E-13 99.0 11.1 33 19-51 4-36 (405)
127 PRK05714 2-octaprenyl-3-methyl 98.9 6.8E-09 1.5E-13 99.5 10.6 33 20-52 3-35 (405)
128 PRK07045 putative monooxygenas 98.9 5.2E-09 1.1E-13 99.7 9.4 121 19-146 5-166 (388)
129 PRK05732 2-octaprenyl-6-methox 98.9 4.3E-09 9.4E-14 100.6 8.7 35 17-51 1-38 (395)
130 PF01494 FAD_binding_3: FAD bi 98.9 8.7E-09 1.9E-13 96.8 10.5 123 20-146 2-173 (356)
131 TIGR01790 carotene-cycl lycope 98.9 2.2E-09 4.7E-14 102.4 6.1 116 21-145 1-141 (388)
132 PRK07608 ubiquinone biosynthes 98.9 1.4E-08 3E-13 96.9 11.5 36 19-54 5-40 (388)
133 PRK07588 hypothetical protein; 98.9 4.3E-09 9.3E-14 100.4 8.0 119 21-148 2-161 (391)
134 PRK08020 ubiF 2-octaprenyl-3-m 98.9 6.7E-09 1.5E-13 99.1 8.7 34 19-52 5-38 (391)
135 TIGR01988 Ubi-OHases Ubiquinon 98.9 1.5E-08 3.3E-13 96.4 11.1 34 21-54 1-34 (385)
136 PRK07494 2-octaprenyl-6-methox 98.9 1.4E-08 3E-13 96.8 10.6 36 19-54 7-42 (388)
137 PF13450 NAD_binding_8: NAD(P) 98.9 3.9E-09 8.4E-14 73.0 4.9 46 24-69 1-46 (68)
138 TIGR00275 flavoprotein, HI0933 98.8 9.8E-09 2.1E-13 97.8 8.6 115 23-147 1-162 (400)
139 PRK06617 2-octaprenyl-6-methox 98.8 1.9E-08 4.2E-13 95.2 10.6 33 19-51 1-33 (374)
140 COG0654 UbiH 2-polyprenyl-6-me 98.8 1E-08 2.2E-13 97.5 8.5 119 19-146 2-163 (387)
141 PRK06753 hypothetical protein; 98.8 3.2E-08 6.9E-13 93.9 11.8 116 21-146 2-153 (373)
142 TIGR01984 UbiH 2-polyprenyl-6- 98.8 1E-08 2.2E-13 97.6 8.3 117 21-146 1-163 (382)
143 PRK08163 salicylate hydroxylas 98.8 1E-08 2.2E-13 98.1 7.6 37 19-55 4-40 (396)
144 PRK06126 hypothetical protein; 98.8 7.8E-08 1.7E-12 95.8 13.9 35 19-53 7-41 (545)
145 PRK08132 FAD-dependent oxidore 98.8 3E-08 6.5E-13 98.7 11.0 123 18-146 22-186 (547)
146 PF05834 Lycopene_cycl: Lycope 98.8 4.8E-08 1E-12 92.3 11.1 114 21-143 1-140 (374)
147 TIGR02028 ChlP geranylgeranyl 98.8 5.5E-08 1.2E-12 92.7 11.4 34 20-53 1-34 (398)
148 PLN02697 lycopene epsilon cycl 98.8 1.7E-08 3.8E-13 98.3 8.1 116 19-145 108-248 (529)
149 PRK06185 hypothetical protein; 98.8 3.5E-08 7.6E-13 94.7 10.2 35 19-53 6-40 (407)
150 PRK06475 salicylate hydroxylas 98.8 2.5E-08 5.4E-13 95.4 8.8 35 20-54 3-37 (400)
151 PLN02661 Putative thiazole syn 98.7 3.2E-08 7E-13 90.2 8.6 124 19-143 92-242 (357)
152 PF00070 Pyr_redox: Pyridine n 98.7 2.7E-08 5.8E-13 71.6 6.2 39 178-217 1-39 (80)
153 PRK08243 4-hydroxybenzoate 3-m 98.7 9.5E-08 2.1E-12 91.1 11.8 35 19-53 2-36 (392)
154 PF01266 DAO: FAD dependent ox 98.7 3.2E-08 6.9E-13 93.0 8.5 46 92-147 159-205 (358)
155 PRK07538 hypothetical protein; 98.7 2.7E-07 5.8E-12 88.7 14.9 34 21-54 2-35 (413)
156 TIGR03219 salicylate_mono sali 98.7 2.8E-08 6.1E-13 95.5 7.7 35 21-55 2-37 (414)
157 TIGR01989 COQ6 Ubiquinone bios 98.7 7.6E-08 1.6E-12 93.1 10.7 32 20-51 1-36 (437)
158 PRK11259 solA N-methyltryptoph 98.7 6.2E-08 1.3E-12 92.0 9.9 37 18-54 2-38 (376)
159 PRK12266 glpD glycerol-3-phosp 98.7 1E-07 2.2E-12 93.7 11.6 37 19-55 6-42 (508)
160 COG0578 GlpA Glycerol-3-phosph 98.7 9.4E-08 2E-12 91.6 10.8 51 92-146 176-226 (532)
161 PRK05192 tRNA uridine 5-carbox 98.7 6.2E-08 1.3E-12 94.7 9.7 37 19-55 4-41 (618)
162 PRK06996 hypothetical protein; 98.7 9.2E-08 2E-12 91.4 10.4 119 19-143 11-172 (398)
163 COG0579 Predicted dehydrogenas 98.7 8.3E-08 1.8E-12 90.0 9.2 40 17-56 1-42 (429)
164 PRK13369 glycerol-3-phosphate 98.7 1.4E-07 3E-12 92.8 11.3 51 92-147 167-217 (502)
165 PRK12409 D-amino acid dehydrog 98.7 1.4E-07 3E-12 90.6 11.1 36 19-54 1-36 (410)
166 PF00070 Pyr_redox: Pyridine n 98.7 8.3E-09 1.8E-13 74.3 1.5 79 21-121 1-79 (80)
167 PLN00093 geranylgeranyl diphos 98.7 1.2E-07 2.5E-12 91.5 9.9 34 19-52 39-72 (450)
168 COG1249 Lpd Pyruvate/2-oxoglut 98.7 5E-08 1.1E-12 93.0 7.1 106 17-151 171-276 (454)
169 PRK08274 tricarballylate dehyd 98.6 1E-07 2.2E-12 93.0 9.3 35 19-53 4-38 (466)
170 TIGR01789 lycopene_cycl lycope 98.6 1.2E-07 2.5E-12 89.4 9.1 36 21-56 1-38 (370)
171 PRK11101 glpA sn-glycerol-3-ph 98.6 2.4E-07 5.1E-12 91.9 11.7 36 19-54 6-41 (546)
172 PRK06481 fumarate reductase fl 98.6 6.8E-08 1.5E-12 94.9 7.9 38 19-56 61-98 (506)
173 TIGR01813 flavo_cyto_c flavocy 98.6 7.9E-08 1.7E-12 93.1 7.5 36 21-56 1-37 (439)
174 TIGR02360 pbenz_hydroxyl 4-hyd 98.6 1.8E-07 4E-12 89.0 9.8 35 19-53 2-36 (390)
175 PRK08294 phenol 2-monooxygenas 98.6 2.9E-07 6.4E-12 92.6 11.7 35 19-53 32-67 (634)
176 PRK05976 dihydrolipoamide dehy 98.6 1.1E-07 2.4E-12 92.9 8.2 105 19-150 180-284 (472)
177 PRK11728 hydroxyglutarate oxid 98.6 1.2E-07 2.7E-12 90.4 8.1 37 19-55 2-40 (393)
178 TIGR01377 soxA_mon sarcosine o 98.6 1.1E-07 2.5E-12 90.3 7.8 34 20-53 1-34 (380)
179 COG2081 Predicted flavoprotein 98.6 3.8E-07 8.3E-12 83.1 10.0 150 176-325 3-166 (408)
180 PRK01747 mnmC bifunctional tRN 98.6 5.9E-07 1.3E-11 91.4 12.1 35 20-54 261-295 (662)
181 PLN02985 squalene monooxygenas 98.6 7.5E-07 1.6E-11 87.4 12.3 36 17-52 41-76 (514)
182 TIGR01350 lipoamide_DH dihydro 98.5 2.4E-07 5.2E-12 90.4 8.2 103 19-150 170-272 (461)
183 PF01134 GIDA: Glucose inhibit 98.5 2.3E-07 4.9E-12 86.1 7.4 39 351-389 351-391 (392)
184 PRK13339 malate:quinone oxidor 98.5 1.1E-06 2.3E-11 85.2 12.1 37 19-55 6-44 (497)
185 PRK07251 pyridine nucleotide-d 98.5 1.9E-07 4.2E-12 90.3 6.8 100 19-150 157-256 (438)
186 PRK06327 dihydrolipoamide dehy 98.5 2.6E-07 5.6E-12 90.3 7.3 105 19-150 183-287 (475)
187 COG1233 Phytoene dehydrogenase 98.5 1.5E-07 3.3E-12 91.8 5.7 54 17-70 1-54 (487)
188 PLN02927 antheraxanthin epoxid 98.5 4.5E-07 9.8E-12 90.2 8.9 35 18-52 80-114 (668)
189 TIGR02053 MerA mercuric reduct 98.5 3.2E-07 7E-12 89.5 7.6 104 19-150 166-269 (463)
190 PRK06416 dihydrolipoamide dehy 98.5 2.9E-07 6.2E-12 89.8 7.0 104 19-150 172-275 (462)
191 TIGR03329 Phn_aa_oxid putative 98.5 1.9E-07 4.2E-12 90.9 5.6 36 18-53 23-60 (460)
192 COG0029 NadB Aspartate oxidase 98.5 1.2E-06 2.6E-11 81.9 10.4 33 21-54 9-41 (518)
193 TIGR01320 mal_quin_oxido malat 98.4 2.3E-06 5E-11 83.3 12.5 35 20-54 1-37 (483)
194 PRK04965 NADH:flavorubredoxin 98.4 3.7E-07 8.1E-12 86.6 6.8 97 19-143 141-237 (377)
195 KOG1335 Dihydrolipoamide dehyd 98.4 3.9E-07 8.5E-12 81.9 6.4 152 19-200 211-368 (506)
196 PRK06912 acoL dihydrolipoamide 98.4 6.5E-07 1.4E-11 87.1 8.5 102 19-150 170-271 (458)
197 PRK07818 dihydrolipoamide dehy 98.4 4.1E-07 8.9E-12 88.8 7.1 105 19-150 172-276 (466)
198 PRK06370 mercuric reductase; V 98.4 4.7E-07 1E-11 88.3 7.0 104 19-150 171-274 (463)
199 PRK13977 myosin-cross-reactive 98.4 3.2E-06 7E-11 82.1 12.5 41 18-58 21-65 (576)
200 PRK05249 soluble pyridine nucl 98.4 4.6E-07 1E-11 88.4 6.3 100 19-149 175-274 (461)
201 PRK06467 dihydrolipoamide dehy 98.4 7.6E-07 1.6E-11 86.9 7.7 104 19-150 174-277 (471)
202 PRK08401 L-aspartate oxidase; 98.4 2.5E-06 5.3E-11 83.1 11.2 35 19-53 1-35 (466)
203 PLN02464 glycerol-3-phosphate 98.4 7.3E-07 1.6E-11 89.6 7.6 38 19-56 71-108 (627)
204 PRK07208 hypothetical protein; 98.4 6.1E-07 1.3E-11 88.1 6.5 44 18-61 3-46 (479)
205 PRK06116 glutathione reductase 98.4 6.9E-07 1.5E-11 86.8 6.7 102 19-150 167-268 (450)
206 PRK06175 L-aspartate oxidase; 98.4 1.1E-06 2.4E-11 84.6 8.0 36 20-56 5-40 (433)
207 KOG0029 Amine oxidase [Seconda 98.3 5.4E-07 1.2E-11 87.2 5.2 40 17-56 13-52 (501)
208 PRK00711 D-amino acid dehydrog 98.3 2E-06 4.3E-11 82.9 9.2 33 21-53 2-34 (416)
209 PRK06115 dihydrolipoamide dehy 98.3 1.2E-06 2.5E-11 85.4 7.6 104 19-149 174-278 (466)
210 PTZ00139 Succinate dehydrogena 98.3 6.1E-06 1.3E-10 82.9 12.9 53 4-56 13-66 (617)
211 PRK05945 sdhA succinate dehydr 98.3 3.7E-06 8E-11 84.0 11.3 39 18-56 2-42 (575)
212 TIGR01424 gluta_reduc_2 glutat 98.3 7.5E-07 1.6E-11 86.4 6.2 100 19-149 166-265 (446)
213 TIGR00136 gidA glucose-inhibit 98.3 4E-06 8.7E-11 82.1 11.0 34 20-53 1-34 (617)
214 PRK06452 sdhA succinate dehydr 98.3 2.7E-06 5.9E-11 84.7 10.2 38 19-56 5-42 (566)
215 KOG2820 FAD-dependent oxidored 98.3 1.8E-06 3.9E-11 76.6 7.7 35 19-53 7-41 (399)
216 PRK07804 L-aspartate oxidase; 98.3 2.1E-06 4.5E-11 85.1 9.2 38 19-56 16-53 (541)
217 PRK05257 malate:quinone oxidor 98.3 2.5E-06 5.3E-11 83.2 9.5 37 19-55 5-43 (494)
218 PRK07057 sdhA succinate dehydr 98.3 3.3E-06 7.1E-11 84.5 10.6 38 19-56 12-49 (591)
219 TIGR01812 sdhA_frdA_Gneg succi 98.3 5E-06 1.1E-10 83.2 11.8 36 21-56 1-36 (566)
220 TIGR00551 nadB L-aspartate oxi 98.3 1.6E-06 3.4E-11 85.0 8.1 36 20-56 3-38 (488)
221 PRK08071 L-aspartate oxidase; 98.3 1.6E-06 3.5E-11 85.2 8.2 37 19-56 3-39 (510)
222 PRK08641 sdhA succinate dehydr 98.3 2.1E-06 4.5E-11 85.9 9.0 39 18-56 2-40 (589)
223 PLN00128 Succinate dehydrogena 98.3 2.7E-06 5.8E-11 85.5 9.8 38 19-56 50-87 (635)
224 PRK07573 sdhA succinate dehydr 98.3 1.7E-06 3.7E-11 87.1 8.5 37 19-55 35-71 (640)
225 PRK07845 flavoprotein disulfid 98.3 1.1E-06 2.4E-11 85.7 6.4 101 19-150 177-277 (466)
226 PTZ00383 malate:quinone oxidor 98.3 4.8E-06 1E-10 81.0 10.7 35 19-53 45-81 (497)
227 PRK07846 mycothione reductase; 98.3 1.2E-06 2.7E-11 84.9 6.6 100 19-150 166-265 (451)
228 COG1231 Monoamine oxidase [Ami 98.3 4.8E-06 1E-10 77.3 10.0 39 18-56 6-44 (450)
229 COG1252 Ndh NADH dehydrogenase 98.3 5.7E-07 1.2E-11 83.8 3.8 130 20-184 156-299 (405)
230 PRK09754 phenylpropionate diox 98.3 7.1E-07 1.5E-11 85.2 4.5 99 19-148 144-242 (396)
231 TIGR01373 soxB sarcosine oxida 98.3 4.7E-06 1E-10 80.0 10.1 34 19-52 30-65 (407)
232 PRK08010 pyridine nucleotide-d 98.3 1.3E-06 2.8E-11 84.7 6.2 99 19-149 158-256 (441)
233 COG2907 Predicted NAD/FAD-bind 98.3 1.3E-06 2.8E-11 77.8 5.5 40 18-58 7-46 (447)
234 PLN02507 glutathione reductase 98.3 1.4E-06 3E-11 85.4 6.4 101 19-150 203-303 (499)
235 TIGR01421 gluta_reduc_1 glutat 98.3 1.7E-06 3.7E-11 83.9 6.9 103 19-150 166-268 (450)
236 PF06039 Mqo: Malate:quinone o 98.3 8.1E-06 1.8E-10 76.2 10.7 53 92-147 194-246 (488)
237 PRK06854 adenylylsulfate reduc 98.2 4E-06 8.7E-11 84.1 9.3 36 19-54 11-48 (608)
238 TIGR01811 sdhA_Bsu succinate d 98.2 3.3E-06 7.1E-11 84.6 8.6 33 22-54 1-33 (603)
239 PRK09078 sdhA succinate dehydr 98.2 4.3E-06 9.2E-11 83.8 9.3 38 19-56 12-49 (598)
240 PRK07803 sdhA succinate dehydr 98.2 6.6E-06 1.4E-10 82.9 10.5 37 19-55 8-44 (626)
241 PRK11883 protoporphyrinogen ox 98.2 1.3E-06 2.7E-11 85.1 5.2 40 21-60 2-43 (451)
242 PRK13512 coenzyme A disulfide 98.2 9.7E-07 2.1E-11 85.4 4.2 96 19-149 148-243 (438)
243 PRK08958 sdhA succinate dehydr 98.2 9.3E-06 2E-10 81.2 11.2 38 19-56 7-44 (588)
244 TIGR03452 mycothione_red mycot 98.2 2.2E-06 4.7E-11 83.2 6.5 100 19-150 169-268 (452)
245 PRK14694 putative mercuric red 98.2 1.9E-06 4.1E-11 84.2 6.1 99 19-150 178-276 (468)
246 PRK06292 dihydrolipoamide dehy 98.2 6.2E-06 1.3E-10 80.5 9.5 103 19-150 169-271 (460)
247 PRK06263 sdhA succinate dehydr 98.2 2.3E-06 5.1E-11 85.0 6.5 34 19-53 7-40 (543)
248 PRK06069 sdhA succinate dehydr 98.2 5E-06 1.1E-10 83.2 8.7 38 19-56 5-45 (577)
249 PLN02815 L-aspartate oxidase 98.2 4.4E-06 9.4E-11 83.3 7.9 37 19-56 29-65 (594)
250 TIGR03385 CoA_CoA_reduc CoA-di 98.2 1.7E-06 3.7E-11 83.6 4.9 98 19-149 137-235 (427)
251 PRK08275 putative oxidoreducta 98.2 7.7E-06 1.7E-10 81.5 9.5 36 19-54 9-46 (554)
252 PRK07233 hypothetical protein; 98.2 2.1E-06 4.4E-11 83.2 5.3 39 21-59 1-39 (434)
253 TIGR01292 TRX_reduct thioredox 98.2 1.2E-05 2.7E-10 73.6 10.1 32 178-209 2-33 (300)
254 KOG2404 Fumarate reductase, fl 98.2 8.7E-06 1.9E-10 71.8 8.2 39 19-57 9-47 (477)
255 COG3349 Uncharacterized conser 98.1 2.2E-06 4.8E-11 81.0 4.7 38 20-57 1-38 (485)
256 PRK14727 putative mercuric red 98.1 3.2E-06 6.9E-11 82.7 6.1 98 19-149 188-285 (479)
257 TIGR00031 UDP-GALP_mutase UDP- 98.1 2.6E-06 5.6E-11 79.6 5.1 39 19-57 1-39 (377)
258 TIGR01438 TGR thioredoxin and 98.1 4.8E-06 1.1E-10 81.3 7.1 103 19-150 180-282 (484)
259 TIGR01423 trypano_reduc trypan 98.1 3.5E-06 7.6E-11 82.2 5.9 101 19-149 187-290 (486)
260 PLN02268 probable polyamine ox 98.1 2.7E-06 5.9E-11 82.4 5.1 39 20-58 1-39 (435)
261 PRK13748 putative mercuric red 98.1 3.5E-06 7.6E-11 84.4 5.9 99 19-150 270-368 (561)
262 PTZ00058 glutathione reductase 98.1 4.4E-06 9.6E-11 82.6 6.5 103 19-150 237-339 (561)
263 TIGR01176 fum_red_Fp fumarate 98.1 9.3E-06 2E-10 81.0 8.7 38 19-56 3-42 (580)
264 PTZ00153 lipoamide dehydrogena 98.1 7.5E-06 1.6E-10 82.2 7.9 110 19-150 312-430 (659)
265 KOG0042 Glycerol-3-phosphate d 98.1 2.3E-06 5.1E-11 80.3 4.0 38 19-56 67-104 (680)
266 PRK09564 coenzyme A disulfide 98.1 5.3E-06 1.2E-10 80.6 6.7 100 19-149 149-248 (444)
267 COG0446 HcaD Uncharacterized N 98.1 2.8E-06 6.1E-11 81.6 4.7 102 19-148 136-238 (415)
268 PTZ00052 thioredoxin reductase 98.1 4.8E-06 1E-10 81.7 6.4 100 19-150 182-281 (499)
269 TIGR00562 proto_IX_ox protopor 98.1 3.8E-06 8.3E-11 82.1 5.7 41 19-59 2-46 (462)
270 KOG2415 Electron transfer flav 98.1 2.5E-06 5.4E-11 77.6 3.9 44 14-57 71-120 (621)
271 PRK07395 L-aspartate oxidase; 98.1 4.5E-06 9.7E-11 82.8 6.1 37 19-56 9-45 (553)
272 TIGR02733 desat_CrtD C-3',4' d 98.1 4.5E-06 9.8E-11 82.2 6.1 38 20-57 2-39 (492)
273 COG1232 HemY Protoporphyrinoge 98.1 3.4E-06 7.3E-11 79.9 4.9 48 21-68 2-51 (444)
274 PRK09231 fumarate reductase fl 98.1 9.6E-06 2.1E-10 81.1 8.2 38 19-56 4-43 (582)
275 PLN02576 protoporphyrinogen ox 98.1 5E-06 1.1E-10 82.0 6.1 41 19-59 12-53 (496)
276 TIGR02061 aprA adenosine phosp 98.1 1.1E-05 2.5E-10 80.4 8.4 33 21-53 1-37 (614)
277 KOG2614 Kynurenine 3-monooxyge 98.1 3.9E-06 8.4E-11 76.8 4.5 37 19-55 2-38 (420)
278 PLN02676 polyamine oxidase 98.1 6.6E-06 1.4E-10 80.4 6.3 49 19-67 26-75 (487)
279 TIGR02734 crtI_fam phytoene de 98.1 5.1E-06 1.1E-10 82.0 5.6 36 22-57 1-36 (502)
280 PRK12416 protoporphyrinogen ox 98.1 4.2E-06 9.1E-11 81.7 4.8 41 19-59 1-47 (463)
281 KOG0685 Flavin-containing amin 98.0 6.4E-06 1.4E-10 76.6 5.4 41 19-59 21-62 (498)
282 COG0562 Glf UDP-galactopyranos 98.0 6.2E-06 1.3E-10 72.8 4.9 40 19-58 1-40 (374)
283 PRK14989 nitrite reductase sub 98.0 2.4E-05 5.3E-10 81.1 9.7 103 19-149 145-247 (847)
284 TIGR02730 carot_isom carotene 98.0 8.1E-06 1.7E-10 80.3 5.9 38 20-57 1-38 (493)
285 PRK08205 sdhA succinate dehydr 98.0 1.5E-05 3.2E-10 79.8 7.7 36 20-56 6-41 (583)
286 PRK04176 ribulose-1,5-biphosph 98.0 6E-05 1.3E-09 67.1 10.7 37 173-209 22-58 (257)
287 COG0445 GidA Flavin-dependent 98.0 8.6E-06 1.9E-10 77.1 5.4 34 19-52 4-37 (621)
288 TIGR02374 nitri_red_nirB nitri 98.0 2.2E-05 4.7E-10 81.3 8.9 101 19-149 140-240 (785)
289 PLN02568 polyamine oxidase 98.0 8.2E-06 1.8E-10 80.4 5.5 42 19-60 5-51 (539)
290 PTZ00318 NADH dehydrogenase-li 98.0 4.6E-05 1E-09 73.4 10.3 37 174-210 8-44 (424)
291 PRK10262 thioredoxin reductase 98.0 2.2E-05 4.8E-10 72.7 7.8 104 19-149 146-250 (321)
292 PF04820 Trp_halogenase: Trypt 98.0 1.1E-05 2.3E-10 78.1 5.8 32 21-52 1-35 (454)
293 KOG2960 Protein involved in th 98.0 1.7E-06 3.8E-11 71.5 0.1 52 20-71 77-132 (328)
294 TIGR02731 phytoene_desat phyto 98.0 9.4E-06 2E-10 79.1 5.2 38 21-58 1-38 (453)
295 TIGR00292 thiazole biosynthesi 97.9 6.1E-05 1.3E-09 66.9 9.4 36 174-209 19-54 (254)
296 TIGR01316 gltA glutamate synth 97.9 3.1E-05 6.6E-10 75.1 8.1 102 19-149 272-389 (449)
297 COG3573 Predicted oxidoreducta 97.9 6.8E-05 1.5E-09 66.7 9.3 38 19-56 5-44 (552)
298 TIGR03140 AhpF alkyl hydropero 97.9 3.1E-05 6.7E-10 76.5 8.1 101 19-150 352-453 (515)
299 PF03486 HI0933_like: HI0933-l 97.9 1.5E-05 3.3E-10 75.6 5.6 148 178-327 2-167 (409)
300 PLN02546 glutathione reductase 97.9 1.7E-05 3.7E-10 78.4 5.9 102 19-150 252-353 (558)
301 PF00890 FAD_binding_2: FAD bi 97.9 1.1E-05 2.4E-10 77.7 4.5 36 21-56 1-36 (417)
302 PRK05335 tRNA (uracil-5-)-meth 97.9 1.5E-05 3.1E-10 75.0 5.1 36 19-54 2-37 (436)
303 KOG1298 Squalene monooxygenase 97.9 4.1E-05 8.8E-10 69.3 7.5 35 17-51 43-77 (509)
304 TIGR03169 Nterm_to_SelD pyridi 97.9 3.7E-05 8E-10 72.6 7.3 105 178-330 1-111 (364)
305 PRK12779 putative bifunctional 97.9 3.1E-05 6.7E-10 81.2 7.3 36 174-209 304-339 (944)
306 PRK07512 L-aspartate oxidase; 97.8 2.3E-05 5E-10 77.2 5.9 33 19-53 9-41 (513)
307 TIGR02485 CobZ_N-term precorri 97.8 5.1E-05 1.1E-09 73.4 7.8 30 24-53 1-30 (432)
308 PRK12842 putative succinate de 97.8 2.3E-05 5E-10 78.4 5.5 38 19-56 9-46 (574)
309 PLN02529 lysine-specific histo 97.8 2.3E-05 5E-10 79.3 5.2 41 18-58 159-199 (738)
310 TIGR02732 zeta_caro_desat caro 97.8 2.4E-05 5.3E-10 76.3 5.2 37 21-57 1-37 (474)
311 COG1053 SdhA Succinate dehydro 97.8 4.8E-05 1E-09 74.9 7.0 38 19-56 6-43 (562)
312 PRK15317 alkyl hydroperoxide r 97.8 9.1E-05 2E-09 73.3 9.0 100 19-149 351-451 (517)
313 PRK07121 hypothetical protein; 97.8 2.6E-05 5.7E-10 76.7 5.2 38 19-56 20-57 (492)
314 PRK12770 putative glutamate sy 97.8 6.6E-05 1.4E-09 70.5 7.5 98 20-148 173-287 (352)
315 PLN02487 zeta-carotene desatur 97.8 2.9E-05 6.2E-10 76.8 5.0 41 19-59 75-115 (569)
316 PRK12831 putative oxidoreducta 97.8 7E-05 1.5E-09 72.9 7.7 101 19-148 281-397 (464)
317 PF13434 K_oxygenase: L-lysine 97.8 6.4E-05 1.4E-09 69.8 6.9 117 19-142 190-338 (341)
318 PTZ00363 rab-GDP dissociation 97.7 2.9E-05 6.4E-10 74.4 4.6 42 19-60 4-45 (443)
319 KOG2852 Possible oxidoreductas 97.7 4.8E-05 1E-09 66.2 5.2 37 19-55 10-52 (380)
320 PLN02328 lysine-specific histo 97.7 4.8E-05 1E-09 77.5 5.8 41 19-59 238-278 (808)
321 TIGR03364 HpnW_proposed FAD de 97.7 4.6E-05 9.9E-10 72.0 5.3 34 20-53 1-34 (365)
322 COG2509 Uncharacterized FAD-de 97.7 0.00018 3.9E-09 66.9 8.8 47 92-146 185-231 (486)
323 PTZ00367 squalene epoxidase; P 97.7 2.5E-05 5.4E-10 77.3 3.4 35 18-52 32-66 (567)
324 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 5E-05 1.1E-09 71.9 5.0 36 20-55 1-36 (433)
325 PRK12837 3-ketosteroid-delta-1 97.7 4.8E-05 1E-09 75.1 5.0 37 19-56 7-43 (513)
326 TIGR02462 pyranose_ox pyranose 97.7 5E-05 1.1E-09 74.4 5.1 39 20-58 1-39 (544)
327 PRK11749 dihydropyrimidine deh 97.7 0.00014 3E-09 70.9 7.8 100 19-148 273-388 (457)
328 COG0665 DadA Glycine/D-amino a 97.6 5.9E-05 1.3E-09 71.9 4.9 37 19-55 4-40 (387)
329 PLN02612 phytoene desaturase 97.6 6.9E-05 1.5E-09 74.7 5.2 39 19-57 93-131 (567)
330 PRK09853 putative selenate red 97.6 0.00014 3.1E-09 75.6 7.5 36 174-209 537-572 (1019)
331 PRK12834 putative FAD-binding 97.6 7.3E-05 1.6E-09 74.5 5.2 38 19-56 4-43 (549)
332 PLN02661 Putative thiazole syn 97.6 0.00043 9.3E-09 63.6 9.6 41 169-209 85-126 (357)
333 KOG1336 Monodehydroascorbate/f 97.6 6.3E-05 1.4E-09 70.2 4.2 107 19-153 213-319 (478)
334 PRK12835 3-ketosteroid-delta-1 97.6 7.9E-05 1.7E-09 74.5 5.3 38 19-56 11-48 (584)
335 PRK12778 putative bifunctional 97.6 0.00042 9.2E-09 71.8 10.3 34 19-52 570-604 (752)
336 PRK12844 3-ketosteroid-delta-1 97.6 9.4E-05 2E-09 73.7 5.2 38 19-56 6-43 (557)
337 PRK07843 3-ketosteroid-delta-1 97.6 9.6E-05 2.1E-09 73.7 5.3 38 19-56 7-44 (557)
338 PLN02976 amine oxidase 97.5 9.4E-05 2E-09 78.4 5.2 42 19-60 693-734 (1713)
339 PLN03000 amine oxidase 97.5 0.00012 2.7E-09 74.7 5.8 41 19-59 184-224 (881)
340 PLN02463 lycopene beta cyclase 97.5 0.00037 7.9E-09 67.2 8.5 135 177-327 29-170 (447)
341 PLN02852 ferredoxin-NADP+ redu 97.5 0.00019 4.1E-09 69.6 6.5 35 175-209 25-61 (491)
342 PRK12845 3-ketosteroid-delta-1 97.5 0.00011 2.3E-09 73.2 5.0 37 19-56 16-52 (564)
343 PF00732 GMC_oxred_N: GMC oxid 97.5 7E-05 1.5E-09 68.5 3.5 35 20-54 1-36 (296)
344 PRK06847 hypothetical protein; 97.5 0.00048 1E-08 65.3 9.3 34 176-209 4-37 (375)
345 TIGR03143 AhpF_homolog putativ 97.5 0.00037 8.1E-09 69.5 8.0 100 19-149 143-248 (555)
346 PRK12839 hypothetical protein; 97.4 0.00019 4.1E-09 71.6 5.6 38 19-56 8-45 (572)
347 KOG2853 Possible oxidoreductas 97.4 0.00059 1.3E-08 61.0 7.8 33 21-53 88-124 (509)
348 PF13738 Pyr_redox_3: Pyridine 97.4 0.00014 3E-09 62.5 3.8 30 180-209 1-31 (203)
349 PF07992 Pyr_redox_2: Pyridine 97.4 0.00014 3E-09 62.4 3.6 32 178-209 1-32 (201)
350 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00016 3.4E-09 74.8 4.6 34 21-54 2-37 (765)
351 PRK08626 fumarate reductase fl 97.4 0.0002 4.4E-09 72.5 5.1 37 19-55 5-41 (657)
352 COG3075 GlpB Anaerobic glycero 97.4 0.00022 4.7E-09 63.5 4.5 34 19-52 2-35 (421)
353 PRK01438 murD UDP-N-acetylmura 97.4 7.5E-05 1.6E-09 73.3 1.8 34 19-52 16-49 (480)
354 KOG2311 NAD/FAD-utilizing prot 97.4 0.00087 1.9E-08 62.6 8.5 34 18-51 27-60 (679)
355 TIGR01318 gltD_gamma_fam gluta 97.4 0.0012 2.5E-08 64.5 9.8 101 19-148 282-399 (467)
356 PRK06134 putative FAD-binding 97.3 0.00024 5.3E-09 71.2 5.1 38 19-56 12-49 (581)
357 PTZ00306 NADH-dependent fumara 97.3 0.00024 5.1E-09 76.8 5.3 39 18-56 408-446 (1167)
358 TIGR03315 Se_ygfK putative sel 97.3 0.0004 8.8E-09 72.6 6.5 35 175-209 536-570 (1012)
359 PRK06834 hypothetical protein; 97.3 0.001 2.2E-08 65.2 9.0 34 176-209 3-36 (488)
360 KOG2495 NADH-dehydrogenase (ub 97.3 0.00032 6.9E-09 64.7 4.9 103 19-150 218-334 (491)
361 PRK12775 putative trifunctiona 97.3 0.00034 7.3E-09 74.2 5.8 35 175-209 429-463 (1006)
362 PRK12814 putative NADPH-depend 97.3 0.002 4.3E-08 65.6 11.0 96 19-143 323-435 (652)
363 PRK12769 putative oxidoreducta 97.3 0.00074 1.6E-08 68.8 7.9 98 19-143 468-582 (654)
364 PF01134 GIDA: Glucose inhibit 97.3 0.0027 5.9E-08 59.3 10.9 30 178-207 1-30 (392)
365 PRK09077 L-aspartate oxidase; 97.3 0.00036 7.8E-09 69.3 5.3 37 19-56 8-44 (536)
366 KOG2844 Dimethylglycine dehydr 97.3 0.00036 7.7E-09 67.7 4.9 46 92-146 199-244 (856)
367 KOG3855 Monooxygenase involved 97.3 0.001 2.2E-08 61.2 7.5 33 19-51 36-72 (481)
368 PRK12843 putative FAD-binding 97.2 0.0004 8.6E-09 69.6 5.3 39 19-57 16-54 (578)
369 KOG1276 Protoporphyrinogen oxi 97.2 0.00036 7.9E-09 64.3 4.4 41 19-59 11-53 (491)
370 TIGR01789 lycopene_cycl lycope 97.2 0.00035 7.5E-09 65.9 4.5 32 178-209 1-34 (370)
371 PRK12810 gltD glutamate syntha 97.2 0.001 2.2E-08 65.0 7.6 105 19-142 281-397 (471)
372 PRK08773 2-octaprenyl-3-methyl 97.2 0.00062 1.4E-08 65.0 6.0 34 176-209 6-39 (392)
373 PLN02172 flavin-containing mon 97.2 0.00095 2.1E-08 64.8 6.9 34 19-52 204-237 (461)
374 COG0492 TrxB Thioredoxin reduc 97.1 0.0044 9.5E-08 56.5 10.2 32 177-208 4-35 (305)
375 PRK07236 hypothetical protein; 97.1 0.0027 5.9E-08 60.5 9.4 35 175-209 5-39 (386)
376 PF13454 NAD_binding_9: FAD-NA 97.1 0.0059 1.3E-07 49.9 10.0 30 180-209 1-35 (156)
377 PF01593 Amino_oxidase: Flavin 97.1 0.00024 5.2E-09 68.5 2.0 42 93-143 222-263 (450)
378 PRK02106 choline dehydrogenase 97.1 0.00056 1.2E-08 68.5 4.4 33 20-52 6-39 (560)
379 TIGR01317 GOGAT_sm_gam glutama 97.0 0.00094 2E-08 65.4 5.4 35 175-209 142-176 (485)
380 TIGR01372 soxA sarcosine oxida 97.0 0.0013 2.9E-08 70.0 6.8 96 19-149 317-413 (985)
381 PRK13800 putative oxidoreducta 97.0 0.00071 1.5E-08 71.4 4.7 35 19-53 13-47 (897)
382 PRK06567 putative bifunctional 97.0 0.0016 3.4E-08 67.4 6.9 36 174-209 381-416 (1028)
383 TIGR03378 glycerol3P_GlpB glyc 97.0 0.00088 1.9E-08 63.3 4.8 33 20-52 1-33 (419)
384 PRK09126 hypothetical protein; 97.0 0.0024 5.2E-08 61.0 7.9 33 177-209 4-36 (392)
385 PRK12809 putative oxidoreducta 97.0 0.00094 2E-08 67.8 5.3 35 175-209 309-343 (639)
386 COG0654 UbiH 2-polyprenyl-6-me 97.0 0.0014 3.1E-08 62.4 5.9 142 177-326 3-162 (387)
387 COG2072 TrkA Predicted flavopr 96.9 0.0072 1.6E-07 58.4 10.7 35 175-209 7-42 (443)
388 COG3486 IucD Lysine/ornithine 96.9 0.005 1.1E-07 56.8 8.9 49 92-143 290-338 (436)
389 PRK13984 putative oxidoreducta 96.9 0.0077 1.7E-07 61.0 11.1 31 19-49 418-454 (604)
390 PRK05714 2-octaprenyl-3-methyl 96.9 0.0038 8.2E-08 59.9 8.5 32 178-209 4-35 (405)
391 PRK01438 murD UDP-N-acetylmura 96.9 0.0031 6.7E-08 61.9 8.0 36 174-209 14-49 (480)
392 TIGR00275 flavoprotein, HI0933 96.9 0.0035 7.7E-08 59.9 8.1 30 180-209 1-30 (400)
393 KOG2665 Predicted FAD-dependen 96.9 0.0026 5.6E-08 56.4 6.4 37 19-55 48-86 (453)
394 PRK09897 hypothetical protein; 96.9 0.0089 1.9E-07 58.9 10.7 33 177-209 2-36 (534)
395 KOG1346 Programmed cell death 96.8 0.00048 1E-08 63.1 1.6 100 19-149 347-451 (659)
396 PRK05192 tRNA uridine 5-carbox 96.8 0.0039 8.5E-08 61.7 7.9 33 177-209 5-37 (618)
397 TIGR01790 carotene-cycl lycope 96.8 0.0048 1E-07 58.8 8.3 32 178-209 1-32 (388)
398 PRK08163 salicylate hydroxylas 96.8 0.0045 9.7E-08 59.2 8.1 34 176-209 4-37 (396)
399 PF01266 DAO: FAD dependent ox 96.8 0.0024 5.1E-08 59.9 6.0 32 178-209 1-32 (358)
400 PRK08850 2-octaprenyl-6-methox 96.8 0.0061 1.3E-07 58.5 8.8 33 176-208 4-36 (405)
401 PTZ00188 adrenodoxin reductase 96.8 0.0026 5.6E-08 61.2 6.0 35 175-209 38-73 (506)
402 PRK07608 ubiquinone biosynthes 96.8 0.0027 5.9E-08 60.5 6.2 33 177-209 6-38 (388)
403 PRK05868 hypothetical protein; 96.8 0.0048 1E-07 58.4 7.8 33 177-209 2-34 (372)
404 PRK06753 hypothetical protein; 96.8 0.0046 9.9E-08 58.6 7.7 32 178-209 2-33 (373)
405 TIGR01810 betA choline dehydro 96.7 0.0013 2.9E-08 65.4 3.8 32 21-52 1-33 (532)
406 PRK07333 2-octaprenyl-6-methox 96.7 0.0043 9.3E-08 59.5 7.2 32 178-209 3-36 (403)
407 PRK06184 hypothetical protein; 96.7 0.0078 1.7E-07 59.5 9.0 34 176-209 3-36 (502)
408 PF05834 Lycopene_cycl: Lycope 96.7 0.0028 6E-08 60.1 5.4 133 178-327 1-143 (374)
409 PRK10157 putative oxidoreducta 96.6 0.0021 4.5E-08 62.1 4.2 33 177-209 6-38 (428)
410 COG1148 HdrA Heterodisulfide r 96.6 0.0033 7.1E-08 59.1 5.2 35 175-209 123-157 (622)
411 KOG1399 Flavin-containing mono 96.6 0.018 3.9E-07 55.3 10.3 35 175-209 5-39 (448)
412 COG0493 GltD NADPH-dependent g 96.6 0.0021 4.6E-08 61.8 4.1 50 174-224 121-170 (457)
413 PRK08401 L-aspartate oxidase; 96.6 0.034 7.3E-07 54.4 12.5 33 177-209 2-34 (466)
414 PRK08849 2-octaprenyl-3-methyl 96.6 0.0042 9.2E-08 59.1 6.0 33 177-209 4-36 (384)
415 KOG0399 Glutamate synthase [Am 96.6 0.0056 1.2E-07 63.1 6.8 36 174-209 1783-1818(2142)
416 PRK11728 hydroxyglutarate oxid 96.5 0.013 2.7E-07 56.1 8.8 32 178-209 4-37 (393)
417 TIGR01470 cysG_Nterm siroheme 96.5 0.0053 1.2E-07 52.6 5.6 36 174-209 7-42 (205)
418 PLN02785 Protein HOTHEAD 96.5 0.0029 6.2E-08 63.3 4.4 34 19-53 55-88 (587)
419 TIGR01988 Ubi-OHases Ubiquinon 96.5 0.004 8.7E-08 59.2 5.2 32 178-209 1-32 (385)
420 PRK07190 hypothetical protein; 96.5 0.01 2.3E-07 58.2 8.0 33 177-209 6-38 (487)
421 PLN02697 lycopene epsilon cycl 96.4 0.0095 2.1E-07 58.7 7.6 33 177-209 109-141 (529)
422 PRK08244 hypothetical protein; 96.4 0.0087 1.9E-07 59.0 7.4 33 177-209 3-35 (493)
423 PRK07588 hypothetical protein; 96.4 0.017 3.6E-07 55.2 9.1 32 178-209 2-33 (391)
424 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.0075 1.6E-07 57.6 6.7 33 177-209 6-38 (391)
425 TIGR01984 UbiH 2-polyprenyl-6- 96.4 0.0078 1.7E-07 57.2 6.7 32 178-209 1-33 (382)
426 KOG4254 Phytoene desaturase [C 96.4 0.0031 6.8E-08 58.7 3.4 38 19-56 14-51 (561)
427 COG2303 BetA Choline dehydroge 96.4 0.0031 6.7E-08 62.6 3.7 34 19-52 7-40 (542)
428 TIGR02032 GG-red-SF geranylger 96.3 0.0062 1.3E-07 55.4 5.1 32 178-209 2-33 (295)
429 COG1206 Gid NAD(FAD)-utilizing 96.2 0.0048 1E-07 55.2 3.7 34 20-53 4-37 (439)
430 PRK06617 2-octaprenyl-6-methox 96.2 0.0037 8.1E-08 59.2 3.4 32 178-209 3-34 (374)
431 PRK05562 precorrin-2 dehydroge 96.2 0.011 2.5E-07 50.8 5.8 35 174-208 23-57 (223)
432 PRK12771 putative glutamate sy 96.2 0.029 6.2E-07 56.3 9.6 97 19-143 267-378 (564)
433 PF12831 FAD_oxidored: FAD dep 96.2 0.0036 7.7E-08 60.4 3.0 32 178-209 1-32 (428)
434 PRK07045 putative monooxygenas 96.2 0.014 3.1E-07 55.6 7.0 33 177-209 6-38 (388)
435 PRK07364 2-octaprenyl-6-methox 96.2 0.032 7E-07 53.7 9.6 34 176-209 18-51 (415)
436 KOG2755 Oxidoreductase [Genera 96.1 0.011 2.4E-07 51.2 5.3 27 302-328 80-106 (334)
437 PRK08013 oxidoreductase; Provi 96.1 0.016 3.4E-07 55.6 7.2 33 177-209 4-36 (400)
438 TIGR00136 gidA glucose-inhibit 96.1 0.019 4E-07 57.0 7.6 32 178-209 2-33 (617)
439 PLN00093 geranylgeranyl diphos 96.0 0.044 9.6E-07 53.2 9.9 35 175-209 38-72 (450)
440 TIGR03219 salicylate_mono sali 96.0 0.016 3.5E-07 55.7 6.8 32 178-209 2-34 (414)
441 PRK10015 oxidoreductase; Provi 96.0 0.005 1.1E-07 59.4 3.2 33 177-209 6-38 (429)
442 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0063 1.4E-07 49.8 3.3 32 21-52 1-32 (157)
443 TIGR02028 ChlP geranylgeranyl 96.0 0.02 4.2E-07 54.8 7.0 32 178-209 2-33 (398)
444 COG1251 NirB NAD(P)H-nitrite r 95.9 0.042 9.2E-07 54.7 9.1 48 283-330 66-117 (793)
445 KOG3851 Sulfide:quinone oxidor 95.9 0.008 1.7E-07 53.5 3.7 32 297-328 114-147 (446)
446 PRK06718 precorrin-2 dehydroge 95.9 0.023 5E-07 48.6 6.4 34 174-207 8-41 (202)
447 PRK07494 2-octaprenyl-6-methox 95.9 0.027 5.8E-07 53.7 7.5 33 177-209 8-40 (388)
448 TIGR02023 BchP-ChlP geranylger 95.8 0.019 4.2E-07 54.7 6.1 31 178-208 2-32 (388)
449 PF13450 NAD_binding_8: NAD(P) 95.8 0.0086 1.9E-07 41.2 2.7 29 181-209 1-29 (68)
450 TIGR03862 flavo_PP4765 unchara 95.8 0.028 6E-07 52.8 6.9 46 92-147 98-143 (376)
451 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.012 2.7E-07 49.2 3.8 32 21-52 1-32 (180)
452 COG0644 FixC Dehydrogenases (f 95.7 0.017 3.6E-07 55.2 5.2 33 177-209 4-36 (396)
453 PRK05732 2-octaprenyl-6-methox 95.7 0.079 1.7E-06 50.6 9.8 32 177-208 4-38 (395)
454 TIGR00551 nadB L-aspartate oxi 95.6 0.14 3E-06 50.5 11.6 31 178-209 4-34 (488)
455 TIGR01470 cysG_Nterm siroheme 95.6 0.017 3.6E-07 49.5 4.5 34 19-52 9-42 (205)
456 PF13241 NAD_binding_7: Putati 95.5 0.009 2E-07 45.0 2.2 33 19-51 7-39 (103)
457 KOG2311 NAD/FAD-utilizing prot 95.5 0.064 1.4E-06 50.7 8.0 33 177-209 29-61 (679)
458 KOG1238 Glucose dehydrogenase/ 95.5 0.013 2.9E-07 57.4 3.8 37 18-54 56-93 (623)
459 PRK06996 hypothetical protein; 95.5 0.014 3E-07 55.9 4.0 33 177-209 12-48 (398)
460 COG0569 TrkA K+ transport syst 95.5 0.017 3.8E-07 50.3 4.1 33 21-53 2-34 (225)
461 COG0445 GidA Flavin-dependent 95.5 0.031 6.8E-07 53.7 6.0 33 177-209 5-37 (621)
462 PRK06183 mhpA 3-(3-hydroxyphen 95.4 0.034 7.5E-07 55.5 6.7 34 176-209 10-43 (538)
463 PRK02705 murD UDP-N-acetylmura 95.4 0.015 3.2E-07 56.8 4.0 33 21-53 2-34 (459)
464 PRK08132 FAD-dependent oxidore 95.4 0.05 1.1E-06 54.4 7.8 35 175-209 22-56 (547)
465 COG4529 Uncharacterized protei 95.3 0.068 1.5E-06 50.8 7.8 34 177-210 2-38 (474)
466 PF13241 NAD_binding_7: Putati 95.3 0.016 3.5E-07 43.6 3.0 35 174-208 5-39 (103)
467 PRK05335 tRNA (uracil-5-)-meth 95.3 0.017 3.6E-07 54.8 3.7 33 177-209 3-35 (436)
468 PRK11445 putative oxidoreducta 95.3 0.098 2.1E-06 49.1 8.9 31 178-209 3-33 (351)
469 PRK06719 precorrin-2 dehydroge 95.2 0.025 5.4E-07 46.2 4.1 33 19-51 13-45 (157)
470 PF04820 Trp_halogenase: Trypt 95.2 0.041 8.9E-07 53.5 6.2 51 278-328 156-213 (454)
471 TIGR01989 COQ6 Ubiquinone bios 95.2 0.034 7.3E-07 53.9 5.5 32 178-209 2-37 (437)
472 PRK08293 3-hydroxybutyryl-CoA 95.2 0.025 5.3E-07 51.5 4.3 34 19-52 3-36 (287)
473 KOG4716 Thioredoxin reductase 95.1 0.0041 8.8E-08 55.8 -0.8 100 20-143 199-298 (503)
474 PRK05329 anaerobic glycerol-3- 95.1 0.016 3.6E-07 55.3 3.0 93 23-143 219-316 (422)
475 PRK14106 murD UDP-N-acetylmura 95.1 0.027 5.8E-07 54.9 4.5 34 19-52 5-38 (450)
476 PF00743 FMO-like: Flavin-bind 95.1 0.047 1E-06 54.0 6.2 34 19-52 183-216 (531)
477 PRK05808 3-hydroxybutyryl-CoA 95.0 0.027 5.9E-07 51.0 4.2 35 19-53 3-37 (282)
478 PF02558 ApbA: Ketopantoate re 95.0 0.023 5E-07 46.1 3.2 31 179-209 1-31 (151)
479 PRK06718 precorrin-2 dehydroge 95.0 0.034 7.3E-07 47.5 4.3 33 19-51 10-42 (202)
480 COG1635 THI4 Ribulose 1,5-bisp 94.9 0.029 6.3E-07 47.5 3.6 39 171-209 25-63 (262)
481 TIGR00137 gid_trmFO tRNA:m(5)U 94.9 0.024 5.2E-07 54.0 3.4 32 178-209 2-33 (433)
482 KOG0405 Pyridine nucleotide-di 94.9 0.022 4.7E-07 51.5 2.9 103 18-150 188-290 (478)
483 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.031 6.7E-07 50.9 4.1 35 19-53 3-37 (291)
484 PRK06175 L-aspartate oxidase; 94.8 0.4 8.8E-06 46.4 11.9 32 177-209 5-36 (433)
485 PRK07530 3-hydroxybutyryl-CoA 94.8 0.039 8.5E-07 50.3 4.6 34 19-52 4-37 (292)
486 KOG0404 Thioredoxin reductase 94.8 0.2 4.3E-06 42.6 8.1 45 284-328 78-126 (322)
487 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.026 5.7E-07 47.5 3.1 33 21-53 2-34 (185)
488 PRK06129 3-hydroxyacyl-CoA deh 94.7 0.034 7.5E-07 51.1 4.0 33 20-52 3-35 (308)
489 PF00996 GDI: GDP dissociation 94.7 0.042 9.2E-07 52.5 4.6 43 19-61 4-46 (438)
490 PRK09260 3-hydroxybutyryl-CoA 94.7 0.037 8E-07 50.4 4.1 33 20-52 2-34 (288)
491 PF01262 AlaDh_PNT_C: Alanine 94.7 0.043 9.4E-07 45.4 4.1 34 19-52 20-53 (168)
492 PF01488 Shikimate_DH: Shikima 94.6 0.061 1.3E-06 42.7 4.7 34 19-52 12-46 (135)
493 PRK07066 3-hydroxybutyryl-CoA 94.6 0.042 9.1E-07 50.5 4.2 35 19-53 7-41 (321)
494 PF02558 ApbA: Ketopantoate re 94.6 0.051 1.1E-06 44.0 4.3 31 22-52 1-31 (151)
495 PRK07819 3-hydroxybutyryl-CoA 94.6 0.04 8.8E-07 50.0 4.0 34 20-53 6-39 (286)
496 PRK11064 wecC UDP-N-acetyl-D-m 94.6 0.038 8.1E-07 53.0 4.0 35 19-53 3-37 (415)
497 COG1648 CysG Siroheme synthase 94.5 0.072 1.6E-06 45.6 5.1 36 173-208 9-44 (210)
498 PRK06719 precorrin-2 dehydroge 94.4 0.047 1E-06 44.6 3.7 34 173-206 10-43 (157)
499 PRK05945 sdhA succinate dehydr 94.2 0.5 1.1E-05 47.6 11.2 33 177-209 4-38 (575)
500 PRK12409 D-amino acid dehydrog 94.2 0.047 1E-06 52.5 3.8 33 177-209 2-34 (410)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=6.2e-43 Score=338.06 Aligned_cols=355 Identities=29% Similarity=0.491 Sum_probs=208.4
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC---------CCCCCeeeecCCccccCCCCCCCCCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN---------RTYDRLKLHLPKQFCQLPNFPFPEDFPRVP 90 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (408)
++|+|||||++||++|+.|.+.|++++++|+++.+||+|+. ..|+.+.++.++.++.+++++++++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 57999999999999999999999999999999999999974 358889999999999999999999988876
Q ss_pred C-------------ccCc--cccccceeEEEEEcCC---CCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC-
Q 035488 91 H-------------QFDI--NPRFNETVQSAKYDET---FGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE- 151 (408)
Q Consensus 91 ~-------------~~~~--~~~~~~~V~~i~~~~~---~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~- 151 (408)
. ++++ .++++++|+++++..+ .+.|+|++.++ +.. .+..+|+||+|||.++.|.+|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~-g~~---~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND-GKE---ETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT-TEE---EEEEECEEEEEE-SSSCESB---
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC-CeE---EEEEeCeEEEcCCCcCCCCCChh
Confidence 6 6666 4689999999998653 25799987643 222 4668999999999999999995
Q ss_pred -CCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeeccccc-CCchHHH-HHH
Q 035488 152 -FEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVL-GKSTFQL-AVL 228 (408)
Q Consensus 152 -~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~-~~~~~~~-~~~ 228 (408)
+||++.|.|.++|+.+|.+...+.+|+|+|||+|.||+|+|.+|+...++|++.+|++.|++|+... |.+.... ...
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R 237 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTR 237 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----------------------
T ss_pred hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998753 3322211 111
Q ss_pred HHhhcchHHHHHHHHHHH-HHHhh--hhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecCccEEeCCeE
Q 035488 229 MMKYFPLWLVDKILLILA-RLILG--NVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPGIKKFSPGKV 305 (408)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~v 305 (408)
...++.......+.+.+. +.+.. +...++. ........+.|..++.+...+..+.|+++.+|.++++++|
T Consensus 238 ~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl-------~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v 310 (531)
T PF00743_consen 238 FSSFLQKNLPESLSNWLLEKKLNKRFDHENYGL-------KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSV 310 (531)
T ss_dssp --------------------------------------------------------------------EE-EEEE-SSEE
T ss_pred ccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccc
Confidence 111111111111111111 01100 1112222 1112233456788999999999999999888999999999
Q ss_pred EEecCcEE-ccCEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCC-C--CCCceEEEeecccc---CccchhhHHHH
Q 035488 306 ELVNGQVL-EIDSVVLATGYRSNVPSWLKENEFFSENGIPKNPFPNGW-K--GKTGLYAVGFTKRG---LSGASLDAMSV 378 (408)
Q Consensus 306 ~~~~g~~~-~~D~vi~atG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-t--~~~~iya~Gd~~~~---~~~a~~~a~~~ 378 (408)
.+.||+.+ ++|.||+||||+.+. .|+++..+...++.+.. +...+ + ..|++.++|.+... +..+..||+++
T Consensus 311 ~F~DGs~~e~vD~II~~TGY~~~f-pFL~~~~~~~~~~~~~L-Yk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~ 388 (531)
T PF00743_consen 311 IFEDGSTEEDVDVIIFCTGYKFSF-PFLDESLIKVDDNRVRL-YKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWA 388 (531)
T ss_dssp EETTSEEEEE-SEEEE---EE----TTB-TTTT-S-SSSSSE-ETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 99999875 699999999999998 56665533222332221 12233 2 45899999987532 23688999999
Q ss_pred HHHHHHHhh
Q 035488 379 ALDIAKSWK 387 (408)
Q Consensus 379 a~~i~~~~~ 387 (408)
|..+.+...
T Consensus 389 a~v~sG~~~ 397 (531)
T PF00743_consen 389 ARVFSGRVK 397 (531)
T ss_dssp HHHHTTSS-
T ss_pred ccccccccc
Confidence 999888764
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3.8e-37 Score=294.31 Aligned_cols=296 Identities=23% Similarity=0.429 Sum_probs=223.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCC--------------------CCCCeeeecCCccccCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNR--------------------TYDRLKLHLPKQFCQLP 78 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~~~~~ 78 (408)
.++|+|||||++||+||++|++.|++|+|+|+++.+||+|... .|..++.+.++..+.++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4689999999999999999999999999999999999999642 36666677777777777
Q ss_pred CCCCCCCC-------CCCCC-------------ccCcc--ccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCE
Q 035488 79 NFPFPEDF-------PRVPH-------------QFDIN--PRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRW 136 (408)
Q Consensus 79 ~~~~~~~~-------~~~~~-------------~~~~~--~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~ 136 (408)
+++++..+ +.|+. ++++. ++++++|++++..+ +.|+|++.++.+.. .+..||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~---~~~~~d~ 164 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFS---KDEIFDA 164 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCce---EEEEcCE
Confidence 76654321 22333 67776 78999999999876 78999987643222 3678999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeeccc
Q 035488 137 LVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPRE 216 (408)
Q Consensus 137 vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~ 216 (408)
||+|||..+.|.+|.+||.+.+.+.++|++.+.....+.+|+|+|||+|.||+|+|..|...+++|++++|+.. ...
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~-~~~-- 241 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE-SDT-- 241 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc-ccc--
Confidence 99999998899999999999898999999999998889999999999999999999999999999999998761 100
Q ss_pred ccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC
Q 035488 217 VLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG 296 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 296 (408)
.. .+ .+...++.+...
T Consensus 242 ~~-------------~~---------------------------------------------------~~~~~~v~~~~~ 257 (461)
T PLN02172 242 YE-------------KL---------------------------------------------------PVPQNNLWMHSE 257 (461)
T ss_pred cc-------------cC---------------------------------------------------cCCCCceEECCc
Confidence 00 00 000112333233
Q ss_pred ccEEe-CCeEEEecCcEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCC-CC-CCceEEEeecccc--Ccc
Q 035488 297 IKKFS-PGKVELVNGQVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGW-KG-KTGLYAVGFTKRG--LSG 370 (408)
Q Consensus 297 i~~~~-~~~v~~~~g~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~-t~-~~~iya~Gd~~~~--~~~ 370 (408)
|..+. ++.|.+.||+.+++|.||+|||+++++ .|++..+. ..+++.+..-+.+.+ .. .|+++++|..... +..
T Consensus 258 I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~ 336 (461)
T PLN02172 258 IDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVM 336 (461)
T ss_pred ccceecCCeEEECCCCCccCCEEEECCcCCccc-cccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchh
Confidence 44443 345889999999999999999999999 66665432 222232221122222 33 4899999986433 337
Q ss_pred chhhHHHHHHHHHHHhh
Q 035488 371 ASLDAMSVALDIAKSWK 387 (408)
Q Consensus 371 a~~~a~~~a~~i~~~~~ 387 (408)
...||+++|..+.+.+.
T Consensus 337 ~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 337 FEIQSKWVAAVLSGRVT 353 (461)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88999999999988764
No 3
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=264.23 Aligned_cols=280 Identities=23% Similarity=0.329 Sum_probs=209.2
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC-------CCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE-------DFPRVP 90 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 90 (408)
..+||+||||||||++||.++++.+.+++||+....+||+... . .....+|.++... .+.+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~------~----~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK------T----TDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc------c----eeecCCCCCccCCchHHHHHHHHHHH
Confidence 4689999999999999999999999994444444455542211 0 0112222222111 112222
Q ss_pred CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC
Q 035488 91 HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS 170 (408)
Q Consensus 91 ~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 170 (408)
.++++++.. .+|..++... ..|.|++.++ ++++++|||||| ..+..|.+|+...+.+..++.|..|+
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~--------~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~gv~yc~~cd 138 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEG--GPFKVKTDKG--------TYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSYCATCD 138 (305)
T ss_pred hhcCeEEEE-EEEEEEeecC--ceEEEEECCC--------eEEEeEEEECcC--CcccCCCCCcchhhcCCceEEeeecC
Confidence 245555555 6777777664 3788988874 599999999999 67777788876677778899999999
Q ss_pred CCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 035488 171 GASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLIL 250 (408)
Q Consensus 171 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (408)
. .+.+|+|+|||+|++|+|.|..|.+.+++|++++|++ .+.+.+.
T Consensus 139 g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra~~~--------------------------------- 183 (305)
T COG0492 139 G-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRAEEI--------------------------------- 183 (305)
T ss_pred c-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCcCHH---------------------------------
Confidence 8 8899999999999999999999999999999999998 3322111
Q ss_pred hhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhcc-CCeEEecC--ccEEeCC---eEEEecC----cEEccCEEEE
Q 035488 251 GNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRS-GDIKVVPG--IKKFSPG---KVELVNG----QVLEIDSVVL 320 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~~---~v~~~~g----~~~~~D~vi~ 320 (408)
..+.+.+ .+|+++.+ +.++.++ ++.+.+. +.+.+|-++.
T Consensus 184 -------------------------------~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 184 -------------------------------LVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred -------------------------------HHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEE
Confidence 1122222 26777776 8888884 5777764 2789999999
Q ss_pred cCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC----ccchhhHHHHHHHHHHHhhH
Q 035488 321 ATGYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL----SGASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 321 atG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~----~~a~~~a~~~a~~i~~~~~~ 388 (408)
++|..|+. .|++..+..+++|+++++ +.++||.|+|||+||++... .+|..+|..+|.++.+.+..
T Consensus 233 ~iG~~p~~-~~~~~~~~~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 233 AIGHLPNT-ELLKGLGVLDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred ecCCCCch-HHHhhccccCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhh
Confidence 99999999 888887777889999998 45999999999999988653 38889999999999888765
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2.4e-35 Score=271.03 Aligned_cols=284 Identities=23% Similarity=0.288 Sum_probs=198.6
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccccc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPRF 99 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
+||+|||||++|+++|..|++.|.+|+|||+++ +||.|....+ ....+......+.......+.++..++++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE---VENYPGFPEGISGPELMEKMKEQAVKFGAEIIY 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc---ccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999999999999886 6665532110 000000000000001111222334467888888
Q ss_pred cceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeE
Q 035488 100 NETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRV 179 (408)
Q Consensus 100 ~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 179 (408)
++|++++... +.|.|++.++ .++.||+||+||| ..|..|.+||...+.+..++.+...+.....++++
T Consensus 77 -~~v~~v~~~~--~~~~v~~~~~-------~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v 144 (300)
T TIGR01292 77 -EEVIKVDLSD--RPFKVKTGDG-------KEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEV 144 (300)
T ss_pred -EEEEEEEecC--CeeEEEeCCC-------CEEEeCEEEECCC--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEE
Confidence 8999998866 6677877553 5899999999999 56777888887654444444444444445578999
Q ss_pred EEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCC
Q 035488 180 LVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLK 259 (408)
Q Consensus 180 ~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (408)
+|||+|.+|+|+|..|++.+.+|++++|.+. +....
T Consensus 145 ~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~-~~~~~------------------------------------------- 180 (300)
T TIGR01292 145 AVVGGGDSAIEEALYLTRIAKKVTLVHRRDK-FRAEK------------------------------------------- 180 (300)
T ss_pred EEECCChHHHHHHHHHHhhcCEEEEEEeCcc-cCcCH-------------------------------------------
Confidence 9999999999999999999999999999872 21000
Q ss_pred CCCCCCcccccCCCCCcccChhhhhhhccC-CeEEecC--ccEEeCCe----EEEe-----cCcEEccCEEEEcCCCCCC
Q 035488 260 RPPTGPIELKNNEGKTPVLDIGALQKIRSG-DIKVVPG--IKKFSPGK----VELV-----NGQVLEIDSVVLATGYRSN 327 (408)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--i~~~~~~~----v~~~-----~g~~~~~D~vi~atG~~~~ 327 (408)
...+.+++. +|+++.+ +.+++++. +.+. +++++++|.+|+|+|++|+
T Consensus 181 ---------------------~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 181 ---------------------ILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred ---------------------HHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCC
Confidence 011223333 6777655 66666542 3332 2357999999999999999
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccc-cC---ccchhhHHHHHHHHHHHh
Q 035488 328 VPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKR-GL---SGASLDAMSVALDIAKSW 386 (408)
Q Consensus 328 ~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~-~~---~~a~~~a~~~a~~i~~~~ 386 (408)
. .+++.....+.+|++.+| +.++|+.|+||++|||+. .+ ..|+.||+.+|.+|.+.+
T Consensus 240 ~-~~l~~~~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 240 T-ELLKGLLELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred h-HHHHHhheecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 8 666665224667888888 457799999999999986 22 279999999999998653
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.7e-35 Score=276.35 Aligned_cols=289 Identities=19% Similarity=0.247 Sum_probs=204.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-cCCCCCCCeeeecCCc----------cccCCCCCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL-WQNRTYDRLKLHLPKQ----------FCQLPNFPFPEDF 86 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~-w~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 86 (408)
..||++|||+||+|..||.++++.|.+|.++|+...+||+ .+....+.-.+..... .+.........++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4689999999999999999999999999999999778873 1222222111110000 0111000000111
Q ss_pred CCCCC------------------ccCccccccc-eeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 87 PRVPH------------------QFDINPRFNE-TVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 87 ~~~~~------------------~~~~~~~~~~-~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
.+... ..++++..++ +. . +..+|.+... +. .+++++++||||| ++|
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f------~--~~~~v~V~~~--~~---~~~~a~~iiIATG--S~p 147 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF------V--DPHTVEVTGE--DK---ETITADNIIIATG--SRP 147 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE------C--CCCEEEEcCC--Cc---eEEEeCEEEEcCC--CCC
Confidence 11111 2233333321 11 1 1122555443 12 6999999999999 899
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
..|++++.+.. .++.+.+..... ..+++++|||+|.+|+|+|..++.+|.+||++.|++ +++|..+. ++..
T Consensus 148 ~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~-----ei~~ 218 (454)
T COG1249 148 RIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP-----EISK 218 (454)
T ss_pred cCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH-----HHHH
Confidence 99998887642 345554544444 689999999999999999999999999999999999 88898876 5555
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-- 303 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 303 (408)
.+...| ++.+++++.+ +++++..
T Consensus 219 ~~~~~l-----------------------------------------------------~~~gv~i~~~~~v~~~~~~~~ 245 (454)
T COG1249 219 ELTKQL-----------------------------------------------------EKGGVKILLNTKVTAVEKKDD 245 (454)
T ss_pred HHHHHH-----------------------------------------------------HhCCeEEEccceEEEEEecCC
Confidence 544443 3456777776 5555443
Q ss_pred --eEEEecCc--EEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhh
Q 035488 304 --KVELVNGQ--VLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLD 374 (408)
Q Consensus 304 --~v~~~~g~--~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~ 374 (408)
.+.+.+++ .+++|.|++|+|++||++.| +++.++ .+.+|++.+| ..++|+.|+|||+||+++++. .|..|
T Consensus 246 ~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~e 324 (454)
T COG1249 246 GVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAE 324 (454)
T ss_pred eEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHH
Confidence 26667776 68999999999999999766 777788 5677999999 788899999999999987765 78899
Q ss_pred HHHHHHHHHH
Q 035488 375 AMSVALDIAK 384 (408)
Q Consensus 375 a~~~a~~i~~ 384 (408)
|+.+|.+|.+
T Consensus 325 g~iaa~~i~g 334 (454)
T COG1249 325 GRIAAENIAG 334 (454)
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 6
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=265.36 Aligned_cols=340 Identities=30% Similarity=0.474 Sum_probs=240.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCC--CCCCCCCC----
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVP-FIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFP--EDFPRVPH---- 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---- 91 (408)
.++|+|||||++||++|.+|.+.|.+ ++|+||+..+||.|+.+.|+++.+++++..+++++.+++ ..+.....
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 56999999999999999999999998 999999999999999999999999999999999999884 44443332
Q ss_pred ------ccCc--cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeee
Q 035488 92 ------QFDI--NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVM 163 (408)
Q Consensus 92 ------~~~~--~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~ 163 (408)
++++ .+.+++.|..++.+...+.|+|++.++.. .++.+|+||+|||.++.|.+|.++|.+.|.+.++
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----eeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 4443 46778888888888776799999988632 2278999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHH---H
Q 035488 164 HAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVD---K 240 (408)
Q Consensus 164 ~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~---~ 240 (408)
|+.++.+..++.+|+|+|||+|+||++++.+|++.|++|+++.|++.+++|....+.......... ..++..... +
T Consensus 163 HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 241 (443)
T COG2072 163 HSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALR-RALPAGWALRRGR 241 (443)
T ss_pred chhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHh-hhCccceehhhhh
Confidence 999999999999999999999999999999999999999999999999999877544333222211 112211100 0
Q ss_pred HHHH---------------------HHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC-cc
Q 035488 241 ILLI---------------------LARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG-IK 298 (408)
Q Consensus 241 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~ 298 (408)
+... ....+.......++ ..+..+. . ....++..+...+.+......+.+++. +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~-~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~ 318 (443)
T COG2072 242 VLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGV-REDLGPD-Y-APGDGRLVPDGDLFEAGASGDVEVVTEIID 318 (443)
T ss_pred hhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccCh-HhhcCCC-C-Cccccccccccchhhhhhhcccceeecccc
Confidence 0000 00000000000011 0111111 0 112222444555666677777887777 55
Q ss_pred EEeCCeEEEecCcEEccCEEEEcCCCCCCCCCccccccccc--CCCCCCCCCCCCCCCCCceEEEeecccc
Q 035488 299 KFSPGKVELVNGQVLEIDSVVLATGYRSNVPSWLKENEFFS--ENGIPKNPFPNGWKGKTGLYAVGFTKRG 367 (408)
Q Consensus 299 ~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~t~~~~iya~Gd~~~~ 367 (408)
.+....+....+.+.+.|.++.+||+..+.-.........+ ..............+.||+|.++.....
T Consensus 319 ~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 319 RFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred ccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 56666666666777999999999999985312222211111 1222333334566789999999976554
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.4e-34 Score=266.16 Aligned_cols=284 Identities=21% Similarity=0.284 Sum_probs=200.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCC-------CCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPF-------PEDFPRVPH 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 91 (408)
.+||+||||||||++||..|+++|+++++||+. ..||.+.... .++.++.... ...+.++..
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPGDPNDLTGPLLMERMHEHAT 74 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999999999965 5676543210 0011111110 001111222
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG 171 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 171 (408)
.++..++. .+|.+++... +.|+++... ..+.||+||+||| +.|..|++||.+.+.+..++.+..++.
T Consensus 75 ~~~~~~~~-~~v~~v~~~~--~~~~v~~~~--------~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v~~~~~~~~ 141 (321)
T PRK10262 75 KFETEIIF-DHINKVDLQN--RPFRLTGDS--------GEYTCDALIIATG--ASARYLGLPSEEAFKGRGVSACATCDG 141 (321)
T ss_pred HCCCEEEe-eEEEEEEecC--CeEEEEecC--------CEEEECEEEECCC--CCCCCCCCCCHHHcCCCcEEEeecCCH
Confidence 34444444 3577777665 677776532 3689999999999 667888899876655566677776666
Q ss_pred CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 035488 172 ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILG 251 (408)
Q Consensus 172 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (408)
....+++++|||+|.+|+|+|..|++.+++|++++|++. + +.. . ....
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~-~~~-~-----~~~~------------------------ 189 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-F-RAE-K-----ILIK------------------------ 189 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-c-CCC-H-----HHHH------------------------
Confidence 667899999999999999999999999999999999872 2 100 0 1111
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC-----eEEEecC------cEEccCEE
Q 035488 252 NVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-----KVELVNG------QVLEIDSV 318 (408)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-----~v~~~~g------~~~~~D~v 318 (408)
...+.+++.+|+++.+ +++++++ .+.+.++ +++++|.|
T Consensus 190 -----------------------------~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~v 240 (321)
T PRK10262 190 -----------------------------RLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL 240 (321)
T ss_pred -----------------------------HHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEE
Confidence 1134456678888876 7788765 2555432 47999999
Q ss_pred EEcCCCCCCCCCcccccccccCCCCCCCCC----CCCCCCCCceEEEeeccccC----ccchhhHHHHHHHHHHHhhHH
Q 035488 319 VLATGYRSNVPSWLKENEFFSENGIPKNPF----PNGWKGKTGLYAVGFTKRGL----SGASLDAMSVALDIAKSWKEE 389 (408)
Q Consensus 319 i~atG~~~~~~~l~~~~~~~~~~g~~~~~~----~~~~t~~~~iya~Gd~~~~~----~~a~~~a~~~a~~i~~~~~~~ 389 (408)
|+++|++|+. .++.. ++..++|++.++. +.++|+.|+|||+|||+... ..|+.+|..+|..|...+.+.
T Consensus 241 v~a~G~~p~~-~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 241 FVAIGHSPNT-AIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred EEEeCCccCh-hHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhc
Confidence 9999999998 55543 3434567777763 14689999999999998542 378999999999999988653
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-34 Score=265.47 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=213.1
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccC-
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFD- 94 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 94 (408)
.+++|||||||++|+.+|..|.+.. +++++||+++.. .+.++.........+...... .+...+.+.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h-------l~~plL~eva~g~l~~~~i~~--p~~~~~~~~~~ 72 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH-------LFTPLLYEVATGTLSESEIAI--PLRALLRKSGN 72 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc-------ccchhhhhhhcCCCChhheec--cHHHHhcccCc
Confidence 3568999999999999999999985 899999999853 355555444444332222211 1222222222
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC------
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY------ 168 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~------ 168 (408)
+++. ..+|++|+.++ +. |++.++ ..+.||+||+|+| +.+..+.+||..++.-..-...+.
T Consensus 73 v~~~-~~~V~~ID~~~--k~--V~~~~~-------~~i~YD~LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~ 138 (405)
T COG1252 73 VQFV-QGEVTDIDRDA--KK--VTLADL-------GEISYDYLVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRH 138 (405)
T ss_pred eEEE-EEEEEEEcccC--CE--EEeCCC-------ccccccEEEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHH
Confidence 4443 36899999887 66 888773 6899999999999 888888999976542111111100
Q ss_pred -----CCCCCC----CCCeEEEEccCCcHHHHHHHHhccC-------------CccEEEEecCceeecccccCCchHHHH
Q 035488 169 -----KSGASY----RGKRVLVVGCGNSGMEVSLDLCNHN-------------AKPSMVVRSSVHVLPREVLGKSTFQLA 226 (408)
Q Consensus 169 -----~~~~~~----~~~~v~VvG~G~~a~e~a~~l~~~g-------------~~V~~~~r~~~~~~p~~~~~~~~~~~~ 226 (408)
...... ...+++|+|+|.+|+|+|.+|.+.- .+|+++.+.| .++|.... ++.
T Consensus 139 l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~~~~-----~l~ 212 (405)
T COG1252 139 LLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPMFPP-----KLS 212 (405)
T ss_pred HHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccCCCH-----HHH
Confidence 000111 1237999999999999999998642 2789999999 78887665 444
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe
Q 035488 227 VLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK 304 (408)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~ 304 (408)
....+ .+++.+|++..+ |+++++++
T Consensus 213 ~~a~~-----------------------------------------------------~L~~~GV~v~l~~~Vt~v~~~~ 239 (405)
T COG1252 213 KYAER-----------------------------------------------------ALEKLGVEVLLGTPVTEVTPDG 239 (405)
T ss_pred HHHHH-----------------------------------------------------HHHHCCCEEEcCCceEEECCCc
Confidence 43333 345668888877 99999999
Q ss_pred EEEecCcE-EccCEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC------c---cch
Q 035488 305 VELVNGQV-LEIDSVVLATGYRSNVPSWLKE-NEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGL------S---GAS 372 (408)
Q Consensus 305 v~~~~g~~-~~~D~vi~atG~~~~~~~l~~~-~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~------~---~a~ 372 (408)
|.+.+|.+ +++|.+||++|.+++ .++++ .+. .|..|.++++..++.+++|+||++|||+..+ . .|.
T Consensus 240 v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~ 317 (405)
T COG1252 240 VTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH 317 (405)
T ss_pred EEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHH
Confidence 99999985 999999999999999 66666 355 3667999999778889999999999997422 2 688
Q ss_pred hhHHHHHHHHHHHhhHHhHhhh
Q 035488 373 LDAMSVALDIAKSWKEETKQKK 394 (408)
Q Consensus 373 ~~a~~~a~~i~~~~~~~~~~~~ 394 (408)
+||+.+|++|.+.+.+.+..+.
T Consensus 318 Qqg~~~a~ni~~~l~g~~l~~f 339 (405)
T COG1252 318 QQGEYAAKNIKARLKGKPLKPF 339 (405)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999998555444
No 9
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5e-34 Score=274.14 Aligned_cols=284 Identities=17% Similarity=0.232 Sum_probs=194.9
Q ss_pred CCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCccCCCCCCCeeee-cCCccccCCCCCCCCCCCCCCCccCcc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIASLWQNRTYDRLKLH-LPKQFCQLPNFPFPEDFPRVPHQFDIN 96 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
.+|||||||++|++||..|+++ +.+|+|||+++.++ |....+. .............+.....+..+.+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 74 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANCALPYYIGEVVEDRKYALAYTPEKFYDRKQIT 74 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccCCcchhhcCccCCHHHcccCCHHHHHHhCCCE
Confidence 4799999999999999999987 57999999998654 2211000 000000000000000001122346888
Q ss_pred ccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC-----
Q 035488 97 PRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG----- 171 (408)
Q Consensus 97 ~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~----- 171 (408)
++.+++|++|+..+ +. |++.++.+++ ..++.||+|||||| +.|..|.+++. .++......+.
T Consensus 75 v~~~~~V~~Id~~~--~~--v~~~~~~~~~--~~~~~yd~lviAtG--s~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 141 (438)
T PRK13512 75 VKTYHEVIAINDER--QT--VTVLNRKTNE--QFEESYDKLILSPG--ASANSLGFESD-----ITFTLRNLEDTDAIDQ 141 (438)
T ss_pred EEeCCEEEEEECCC--CE--EEEEECCCCc--EEeeecCEEEECCC--CCCCCCCCCCC-----CeEEecCHHHHHHHHH
Confidence 88899999999876 55 5555543222 14689999999999 67776665431 12222111111
Q ss_pred --CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 035488 172 --ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLI 249 (408)
Q Consensus 172 --~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (408)
....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++..+. ++...
T Consensus 142 ~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~-----~~~~~--------------------- 194 (438)
T PRK13512 142 FIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA-----DMNQP--------------------- 194 (438)
T ss_pred HHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH-----HHHHH---------------------
Confidence 12246899999999999999999999999999999988 44443322 22111
Q ss_pred hhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCeEEEecCcEEccCEEEEcCCCCCC
Q 035488 250 LGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGKVELVNGQVLEIDSVVLATGYRSN 327 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~v~~~~g~~~~~D~vi~atG~~~~ 327 (408)
..+.+++.+|+++.+ ++++++..+.+.+|+.+++|.|++|+|++|+
T Consensus 195 --------------------------------l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 195 --------------------------------ILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred --------------------------------HHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcC
Confidence 123345567888776 8888887888888889999999999999999
Q ss_pred CCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc----------Cc---cchhhHHHHHHHHHH
Q 035488 328 VPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRG----------LS---GASLDAMSVALDIAK 384 (408)
Q Consensus 328 ~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~----------~~---~a~~~a~~~a~~i~~ 384 (408)
. .+++..++ .+++|++.+| +.++|+.|+|||+|||+.. .. .|..+|+.+|.+|.+
T Consensus 243 ~-~~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 243 S-KFIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred h-HHHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcC
Confidence 8 67777776 4667888888 4577999999999999752 11 366788888888865
No 10
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.1e-33 Score=276.55 Aligned_cols=283 Identities=19% Similarity=0.279 Sum_probs=202.0
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCC---CCCCCCCCCCCccC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNF---PFPEDFPRVPHQFD 94 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 94 (408)
..+||+||||||||++||..|++.|++|+||+. .+||++.... .+. .+...+.. .+...+.++..+++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~--~~~-----~~~~~~~~~~~~l~~~l~~~l~~~g 281 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV--GIE-----NLISVPYTTGSQLAANLEEHIKQYP 281 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc--Ccc-----cccccCCCCHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999999985 5788764210 000 00011100 01111222333668
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCC
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASY 174 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~ 174 (408)
++++.+++|++++... +.+.|++.++ ..+.||++|+||| +.+..|.+||...+....++.+..++....
T Consensus 282 v~i~~~~~V~~I~~~~--~~~~v~~~~g-------~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~ 350 (515)
T TIGR03140 282 IDLMENQRAKKIETED--GLIVVTLESG-------EVLKAKSVIVATG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFF 350 (515)
T ss_pred CeEEcCCEEEEEEecC--CeEEEEECCC-------CEEEeCEEEECCC--CCcCCCCCCCHHHcCCCeEEEeeccChhhc
Confidence 8888999999998765 5677777553 4799999999999 567778888865443333444444444445
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhh
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVE 254 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (408)
.+++|+|||+|.+|+|+|..|+..+.+|+++.+.+ .+.. ...
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l~~-----------~~~-------------------------- 392 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-ELKA-----------DKV-------------------------- 392 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cCCh-----------hHH--------------------------
Confidence 78999999999999999999999999999998876 2210 000
Q ss_pred hcCCCCCCCCCcccccCCCCCcccChhhhhhhcc-CCeEEecC--ccEEeCC-----eEEEecC-----cEEccCEEEEc
Q 035488 255 KYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRS-GDIKVVPG--IKKFSPG-----KVELVNG-----QVLEIDSVVLA 321 (408)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~~-----~v~~~~g-----~~~~~D~vi~a 321 (408)
..+.+++ .+|+++.+ ++++.++ .+.+.++ +.+++|.|+++
T Consensus 393 ---------------------------l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 393 ---------------------------LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred ---------------------------HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEE
Confidence 0122222 46777766 6777654 2555432 46899999999
Q ss_pred CCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC----ccchhhHHHHHHHHHHHhhH
Q 035488 322 TGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGL----SGASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 322 tG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~----~~a~~~a~~~a~~i~~~~~~ 388 (408)
+|+.|++ .+++.. + .+.+|++.+| +.++|+.|+|||+|||+..+ ..|+.+|..+|.+|.+++.+
T Consensus 446 ~G~~Pn~-~~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 446 IGLVPNT-EWLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred eCCcCCc-hHHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 9999998 666655 4 4567889888 56789999999999998743 38999999999999988754
No 11
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.4e-33 Score=276.06 Aligned_cols=284 Identities=18% Similarity=0.273 Sum_probs=206.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCC---CCCCCCCCCCccCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFP---FPEDFPRVPHQFDI 95 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 95 (408)
.+||+||||||||++||..|+++|++++||++. +||+|... + .+. .+...+... +...+.....++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~-~~~-----~~~~~~~~~~~~l~~~l~~~~~~~gv 281 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M-GIE-----NFISVPETEGPKLAAALEEHVKEYDV 281 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C-ccc-----ccCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 589999999999999999999999999999863 88877421 0 000 000011100 00111223336788
Q ss_pred cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCC
Q 035488 96 NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYR 175 (408)
Q Consensus 96 ~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (408)
+++++++|++++... +.|.|++.++ .++.||+||+||| ..+..|.+||...+.+..++.+..++.....
T Consensus 282 ~i~~~~~V~~I~~~~--~~~~V~~~~g-------~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~ 350 (517)
T PRK15317 282 DIMNLQRASKLEPAA--GLIEVELANG-------AVLKAKTVILATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFK 350 (517)
T ss_pred EEEcCCEEEEEEecC--CeEEEEECCC-------CEEEcCEEEECCC--CCcCCCCCCCHHHhcCceEEEeeccCchhcC
Confidence 888999999998876 6777877554 4799999999999 5667788888766655556665555555568
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhh
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEK 255 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (408)
+++|+|||+|.+|+|+|..|+..+.+|+++.+.+. +.+.. .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~-l~~~~-----------~--------------------------- 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE-LKADQ-----------V--------------------------- 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc-ccccH-----------H---------------------------
Confidence 89999999999999999999999999999998872 21100 0
Q ss_pred cCCCCCCCCCcccccCCCCCcccChhhhhhhc-cCCeEEecC--ccEEeCC-----eEEEec---C--cEEccCEEEEcC
Q 035488 256 YGLKRPPTGPIELKNNEGKTPVLDIGALQKIR-SGDIKVVPG--IKKFSPG-----KVELVN---G--QVLEIDSVVLAT 322 (408)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~--i~~~~~~-----~v~~~~---g--~~~~~D~vi~at 322 (408)
..+.+. ..+|+++.+ ++++.++ .+.+.+ + +++++|.+++++
T Consensus 392 --------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~ 445 (517)
T PRK15317 392 --------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQI 445 (517)
T ss_pred --------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeE
Confidence 011122 247777776 6677655 244442 3 358999999999
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC----ccchhhHHHHHHHHHHHhhHH
Q 035488 323 GYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL----SGASLDAMSVALDIAKSWKEE 389 (408)
Q Consensus 323 G~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~----~~a~~~a~~~a~~i~~~~~~~ 389 (408)
|++|++ .+++.....+.+|++.+| +..+|+.|+|||+||++... ..|+.+|..+|.++.+++.+.
T Consensus 446 G~~p~~-~~l~~~v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 446 GLVPNT-EWLKGTVELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred CCccCc-hHHhhheeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 999998 677665225677899888 56779999999999998753 489999999999999888764
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=7.3e-33 Score=268.96 Aligned_cols=291 Identities=15% Similarity=0.166 Sum_probs=192.3
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEec---------CCCCCCcc-CCCCCCCeeeecCC-------cc--ccC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILER---------ANCIASLW-QNRTYDRLKLHLPK-------QF--CQL 77 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~---------~~~~gg~w-~~~~~~~~~~~~~~-------~~--~~~ 77 (408)
+..|||+||||||+|+.||..++++|.+|+|||+ ...+||++ +...++.-.+.... .. +..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3468999999999999999999999999999996 35688865 22333322211000 00 001
Q ss_pred CCC-CCCCCCCCCC------------------CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEE
Q 035488 78 PNF-PFPEDFPRVP------------------HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLV 138 (408)
Q Consensus 78 ~~~-~~~~~~~~~~------------------~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vV 138 (408)
... ....++.... ...++++.. .++..++. ..+.|+..++ .. ..+.||+||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~-g~a~~vd~----~~v~V~~~~g--~~---~~~~~d~LI 172 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYE-GEGKIVGP----NEVEVTQLDG--TK---LRYTAKHIL 172 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE-EEEEEecC----CEEEEEeCCC--cE---EEEEcCEEE
Confidence 000 0000111111 122333333 23333322 4455655443 11 468999999
Q ss_pred EeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeeccccc
Q 035488 139 VATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVL 218 (408)
Q Consensus 139 iAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~ 218 (408)
|||| +.|..|.+||.+. ..+..+... ....+++++|||+|.+|+|+|..+...|.+|+++++.+ .+++..+.
T Consensus 173 IATG--s~p~~p~ipG~~~----~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~ 244 (499)
T PLN02507 173 IATG--SRAQRPNIPGKEL----AITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDD 244 (499)
T ss_pred EecC--CCCCCCCCCCccc----eechHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCH
Confidence 9999 7888888888642 122222221 12347899999999999999999999999999999987 44443322
Q ss_pred CCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--
Q 035488 219 GKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG-- 296 (408)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 296 (408)
+....+ .+.+++.+|+++.+
T Consensus 245 -----~~~~~l-----------------------------------------------------~~~l~~~GI~i~~~~~ 266 (499)
T PLN02507 245 -----EMRAVV-----------------------------------------------------ARNLEGRGINLHPRTN 266 (499)
T ss_pred -----HHHHHH-----------------------------------------------------HHHHHhCCCEEEeCCE
Confidence 222221 22344557787776
Q ss_pred ccEEeC--Ce--EEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc-
Q 035488 297 IKKFSP--GK--VELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS- 369 (408)
Q Consensus 297 i~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~- 369 (408)
+++++. ++ +.+.+|+++++|.|++++|++|++..+ +++.++ .+.+|++.+| +.++|+.|+|||+|||+..+.
T Consensus 267 V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l 345 (499)
T PLN02507 267 LTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINL 345 (499)
T ss_pred EEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCcc
Confidence 677753 23 555678889999999999999999443 566666 5677999888 567899999999999997544
Q ss_pred --cchhhHHHHHHHHHH
Q 035488 370 --GASLDAMSVALDIAK 384 (408)
Q Consensus 370 --~a~~~a~~~a~~i~~ 384 (408)
.|..||+.+|.+|.+
T Consensus 346 ~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 346 TPVALMEGTCFAKTVFG 362 (499)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 788999999999975
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=5.7e-33 Score=267.30 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=189.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeeec-------CC--ccccCCCC-CCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLHL-------PK--QFCQLPNF-PFPEDFP 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~~-------~~--~~~~~~~~-~~~~~~~ 87 (408)
.|||+||||||+|++||..|+++|.+|+|||+. .+||++. ....+...+.. .+ ..+..+.. ....++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 379999999999999999999999999999995 5888542 22222211000 00 00011100 0000111
Q ss_pred C------------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 88 R------------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 88 ~------------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+ .+.+.+++++.++.+. . +. +. |++.. ..+.||+||+||| +.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~-~--~~--~~--v~v~~--------~~~~~d~vIiAtG--s~p~~ 143 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF-T--KD--GT--VEVNG--------RDYTAPHILIATG--GKPSF 143 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--CE--EEECC--------EEEEeCEEEEecC--CCCCC
Confidence 1 1113455555554321 1 11 22 54432 5799999999999 77888
Q ss_pred C-CCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHH
Q 035488 150 P-EFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVL 228 (408)
Q Consensus 150 p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 228 (408)
| .+||.+. ..+....... ...+++++|||+|.+|+|+|..|+..|.+|++++|.+ .+++..+. ++...
T Consensus 144 p~~i~g~~~----~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~-----~~~~~ 212 (450)
T TIGR01421 144 PENIPGAEL----GTDSDGFFAL-EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS-----MISET 212 (450)
T ss_pred CCCCCCCce----eEcHHHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH-----HHHHH
Confidence 8 7887642 1222222221 2247899999999999999999999999999999988 45554432 22222
Q ss_pred HHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC---
Q 035488 229 MMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--- 303 (408)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--- 303 (408)
+ .+.+++.+|+++.+ +++++.+
T Consensus 213 ~-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~~ 239 (450)
T TIGR01421 213 I-----------------------------------------------------TEEYEKEGINVHKLSKPVKVEKTVEG 239 (450)
T ss_pred H-----------------------------------------------------HHHHHHcCCEEEcCCEEEEEEEeCCc
Confidence 1 23344567888776 6676532
Q ss_pred --eEEEecC-cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhH
Q 035488 304 --KVELVNG-QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDA 375 (408)
Q Consensus 304 --~v~~~~g-~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a 375 (408)
.+.+.++ +.+++|.||+|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||++.+. .|..||
T Consensus 240 ~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g 318 (450)
T TIGR01421 240 KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAG 318 (450)
T ss_pred eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHH
Confidence 2556677 579999999999999999433 566666 5678999988 568899999999999987654 778999
Q ss_pred HHHHHHHHH
Q 035488 376 MSVALDIAK 384 (408)
Q Consensus 376 ~~~a~~i~~ 384 (408)
+.+|.+|.+
T Consensus 319 ~~aa~~i~~ 327 (450)
T TIGR01421 319 RKLSERLFN 327 (450)
T ss_pred HHHHHHHhc
Confidence 999999974
No 14
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=7.5e-33 Score=268.79 Aligned_cols=292 Identities=15% Similarity=0.163 Sum_probs=194.5
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeeecC----------CccccCCCCCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLHLP----------KQFCQLPNFPFPEDF 86 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 86 (408)
..+||+||||||+|++||..|+++|.+|+|||+.+.+||+|.. ...+...+... ..+..... ....++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV-KLRITF 82 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC-cCccCH
Confidence 3589999999999999999999999999999998889997642 22221111000 00000000 000011
Q ss_pred CC------------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 87 PR------------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 87 ~~------------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
.. ...+.+++++.+ ++..++ . +.++|...++ .. ..++||+|||||| +.|.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g--~~---~~~~~d~lviATG--s~p~ 150 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVD--P--HTVEVECPDG--EV---ETLTADKIVIATG--SRPY 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEec--C--CEEEEEeCCC--ce---EEEEcCEEEEcCC--CCCC
Confidence 10 111334444443 232232 1 4444554332 11 4799999999999 7788
Q ss_pred CCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHH
Q 035488 149 EPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVL 228 (408)
Q Consensus 149 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 228 (408)
.|++++... ..+++..+.... ...+++++|||+|.+|+|+|..++..|.+|+++.+++ +++|..+. ++...
T Consensus 151 ~p~~~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~ 221 (461)
T PRK05249 151 RPPDVDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDD-----EISDA 221 (461)
T ss_pred CCCCCCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCH-----HHHHH
Confidence 887665432 123333333322 3467999999999999999999999999999999988 56554332 22222
Q ss_pred HHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCe
Q 035488 229 MMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGK 304 (408)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~ 304 (408)
+ .+.+++.+|+++.+ +++++ +++
T Consensus 222 l-----------------------------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~ 248 (461)
T PRK05249 222 L-----------------------------------------------------SYHLRDSGVTIRHNEEVEKVEGGDDG 248 (461)
T ss_pred H-----------------------------------------------------HHHHHHcCCEEEECCEEEEEEEeCCe
Confidence 1 22334457777765 66665 333
Q ss_pred --EEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 305 --VELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 305 --v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
+.+.+|+++++|.|++|+|++|++..+ ++..++ .+++|++.+| +..+|+.|+|||+|||++.+. .|..||+.
T Consensus 249 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~ 327 (461)
T PRK05249 249 VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRI 327 (461)
T ss_pred EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHH
Confidence 445678889999999999999998433 555566 4668889988 577899999999999987544 68899999
Q ss_pred HHHHHHHH
Q 035488 378 VALDIAKS 385 (408)
Q Consensus 378 ~a~~i~~~ 385 (408)
+|.+|.+.
T Consensus 328 aa~~i~g~ 335 (461)
T PRK05249 328 AAQHAVGE 335 (461)
T ss_pred HHHHHcCC
Confidence 99999753
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=9.7e-33 Score=266.85 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=190.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeeecC-------Cc---cccCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLHLP-------KQ---FCQLPNFPFPEDFP 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~ 87 (408)
.+||+||||||+|++||..|+++|.+|+|||+. .+||++. ....+...+... .. .+.+.......++.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 479999999999999999999999999999986 7888652 222222110000 00 00010000000111
Q ss_pred C------------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 88 R------------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 88 ~------------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
. .+.+.++++..+ ++..++ .++|++ ++ ..++||+||+||| +.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~------~~~v~~-~g-------~~~~~d~lViATG--s~p~~ 145 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD------AHTVEV-NG-------ERYTADHILIATG--GRPSI 145 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc------CCEEEE-CC-------EEEEeCEEEEecC--CCCCC
Confidence 0 111345555543 343332 123666 32 5799999999999 77888
Q ss_pred CCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHH
Q 035488 150 PEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLM 229 (408)
Q Consensus 150 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 229 (408)
|++||.+. ..+....... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++..+. ++...
T Consensus 146 p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~-----~~~~~- 213 (450)
T PRK06116 146 PDIPGAEY----GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP-----DIRET- 213 (450)
T ss_pred CCCCCcce----eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH-----HHHHH-
Confidence 88888642 2333222222 2357899999999999999999999999999999987 44443221 11111
Q ss_pred HhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C--
Q 035488 230 MKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G-- 303 (408)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~-- 303 (408)
..+.+++.+|+++.+ +.+++. +
T Consensus 214 ----------------------------------------------------l~~~L~~~GV~i~~~~~V~~i~~~~~g~ 241 (450)
T PRK06116 214 ----------------------------------------------------LVEEMEKKGIRLHTNAVPKAVEKNADGS 241 (450)
T ss_pred ----------------------------------------------------HHHHHHHCCcEEECCCEEEEEEEcCCce
Confidence 123344567888766 777753 2
Q ss_pred -eEEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 304 -KVELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 304 -~v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
.+.+.+|+++++|.||+|+|++|+...+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..||+.
T Consensus 242 ~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~ 320 (450)
T PRK06116 242 LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRR 320 (450)
T ss_pred EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHH
Confidence 2556688899999999999999999544 455566 5678999988 567899999999999986543 78899999
Q ss_pred HHHHHHH
Q 035488 378 VALDIAK 384 (408)
Q Consensus 378 ~a~~i~~ 384 (408)
+|.+|.+
T Consensus 321 aa~~i~g 327 (450)
T PRK06116 321 LSERLFN 327 (450)
T ss_pred HHHHHhC
Confidence 9999975
No 16
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=6.4e-33 Score=267.25 Aligned_cols=285 Identities=16% Similarity=0.204 Sum_probs=189.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeeecCC----ccccCCCC-----CCCCCC--
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLHLPK----QFCQLPNF-----PFPEDF-- 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~-- 86 (408)
.|||+||||||+|++||..++++|.+|+|+|++ .+||+.. ....+.-.+.... .+...+.+ ....++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 379999999999999999999999999999985 6888532 2222221110000 00000000 000010
Q ss_pred ----------------CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 87 ----------------PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 87 ----------------~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
...+.+.++++.. .++..++. +.+.+. .++ ..++||+|||||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~-g~~~~v~~----~~v~v~-~~g-------~~~~~d~lIiATG--s~p~~p 145 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLE-GRARLVGP----NTVEVL-QDG-------TTYTAKKILIAVG--GRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEE-EEEEEecC----CEEEEe-cCC-------eEEEcCEEEEecC--CcCCCC
Confidence 1112244555544 35555542 232232 121 5799999999999 788888
Q ss_pred CCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHH
Q 035488 151 EFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMM 230 (408)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 230 (408)
++||.+. .....+... ....+++++|||+|.+|+|+|..+...|.+|+++.+.+ .+++..+. ++...+
T Consensus 146 ~i~G~~~----~~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~-----~~~~~l- 213 (446)
T TIGR01424 146 NLPGHEL----GITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD-----DMRALL- 213 (446)
T ss_pred CCCCccc----eechHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH-----HHHHHH-
Confidence 8888642 122211211 22357899999999999999999999999999999987 44443322 222111
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--Ce--
Q 035488 231 KYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--GK-- 304 (408)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~-- 304 (408)
.+.+++.+|+++.+ +.+++. ++
T Consensus 214 ----------------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~ 241 (446)
T TIGR01424 214 ----------------------------------------------------ARNMEGRGIRIHPQTSLTSITKTDDGLK 241 (446)
T ss_pred ----------------------------------------------------HHHHHHCCCEEEeCCEEEEEEEcCCeEE
Confidence 22334557777766 667653 22
Q ss_pred EEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHH
Q 035488 305 VELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVA 379 (408)
Q Consensus 305 v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a 379 (408)
+.+.+++.+++|.||+|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||++... .|..||+.+|
T Consensus 242 v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a 320 (446)
T TIGR01424 242 VTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFA 320 (446)
T ss_pred EEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHH
Confidence 555678889999999999999998433 556666 5667889888 567899999999999987544 7889999999
Q ss_pred HHHHH
Q 035488 380 LDIAK 384 (408)
Q Consensus 380 ~~i~~ 384 (408)
.+|.+
T Consensus 321 ~~i~~ 325 (446)
T TIGR01424 321 NTEFG 325 (446)
T ss_pred HHHhc
Confidence 99975
No 17
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.7e-32 Score=270.00 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=197.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCC------CCCCCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFP------FPEDFPRVPHQ 92 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 92 (408)
.+||+||||||||++||..|++.|++|+|||++ .+||++.... ....++... +...+.....+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg~~~~~~~~l~~~l~~~~~~ 72 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPGILNTTGPELMQEMRQQAQD 72 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCCCcCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999996 5777543210 000111110 00011112234
Q ss_pred cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCC
Q 035488 93 FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGA 172 (408)
Q Consensus 93 ~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~ 172 (408)
++++++ +++|++++... +.+.|++.+ ..+.+++||+||| +.|..|++||.+.+.+..++.+..++..
T Consensus 73 ~gv~~~-~~~V~~i~~~~--~~~~V~~~~--------g~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~ 139 (555)
T TIGR03143 73 FGVKFL-QAEVLDVDFDG--DIKTIKTAR--------GDYKTLAVLIATG--ASPRKLGFPGEEEFTGRGVAYCATCDGE 139 (555)
T ss_pred cCCEEe-ccEEEEEEecC--CEEEEEecC--------CEEEEeEEEECCC--CccCCCCCCCHHHhCCceEEEEeecChh
Confidence 566664 67888888755 556666644 3689999999999 6778888998755444445555555545
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhh
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGN 252 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (408)
.+.+++++|||+|.+|+|+|..|.+.|.+|++++|.+. +.... ...
T Consensus 140 ~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~-~~~~~-------~~~-------------------------- 185 (555)
T TIGR03143 140 FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD-FTCAK-------LIA-------------------------- 185 (555)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc-cccCH-------HHH--------------------------
Confidence 56799999999999999999999999999999999872 21000 000
Q ss_pred hhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe----EEE---ecCcEE----ccCE--
Q 035488 253 VEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK----VEL---VNGQVL----EIDS-- 317 (408)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~---~~g~~~----~~D~-- 317 (408)
.+.+...+|+++.+ +.++.++. +.+ .+|+.. ++|.
T Consensus 186 ------------------------------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~ 235 (555)
T TIGR03143 186 ------------------------------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGT 235 (555)
T ss_pred ------------------------------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccc
Confidence 01122346777765 67776542 222 345532 3676
Q ss_pred --EEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeecccc----CccchhhHHHHHHHHHHHhhHHhH
Q 035488 318 --VVLATGYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRG----LSGASLDAMSVALDIAKSWKEETK 391 (408)
Q Consensus 318 --vi~atG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~----~~~a~~~a~~~a~~i~~~~~~~~~ 391 (408)
|++++|+.|++ .+++...-.+.+|++.+| ..++|+.|+|||+|||+.. ...|..+|+.+|.+|.+++.+.+.
T Consensus 236 ~~Vi~a~G~~Pn~-~l~~~~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 236 FGVFVFVGYAPSS-ELFKGVVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred eEEEEEeCCCCCh-hHHhhhcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhhh
Confidence 99999999998 666553225668999888 5678999999999998742 337999999999999999976555
No 18
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.4e-32 Score=262.43 Aligned_cols=290 Identities=18% Similarity=0.227 Sum_probs=191.5
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCCccC-CCCCCCeeeecCCccccCCCCC------------CC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN-CIASLWQ-NRTYDRLKLHLPKQFCQLPNFP------------FP 83 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~-~~gg~w~-~~~~~~~~~~~~~~~~~~~~~~------------~~ 83 (408)
..+||+||||||+|++||..|+++|.+|+|||+.+ .+||+|. ....+...+..... ...++. +.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--QHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc--cCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999976 4788763 22222111000000 000000 00
Q ss_pred C-CCCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceee
Q 035488 84 E-DFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNV 162 (408)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~ 162 (408)
. .+....+..++++.. .++..++. +.+.|+..++ ..++.||+||+||| +.|..|++||.+...+ +
T Consensus 80 ~~~~~~~~~~~gv~~~~-g~~~~i~~----~~~~v~~~~g------~~~~~~d~lviATG--s~p~~p~i~G~~~~~~-v 145 (441)
T PRK08010 80 NKNFHNLADMPNIDVID-GQAEFINN----HSLRVHRPEG------NLEIHGEKIFINTG--AQTVVPPIPGITTTPG-V 145 (441)
T ss_pred HhHHHHHhhcCCcEEEE-EEEEEecC----CEEEEEeCCC------eEEEEeCEEEEcCC--CcCCCCCCCCccCCCC-E
Confidence 0 000011112444433 23444432 4444555432 13699999999999 7888889999764332 3
Q ss_pred eeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHH
Q 035488 163 MHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKIL 242 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (408)
++...... ....+++++|||+|.+|+|+|..|...|.+|+++.+.+ .++|..+. ++...+
T Consensus 146 ~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~l------------- 205 (441)
T PRK08010 146 YDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----DIADNI------------- 205 (441)
T ss_pred EChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----HHHHHH-------------
Confidence 33333332 22357899999999999999999999999999999987 56665432 222221
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--eEEEe-cCcEEccCE
Q 035488 243 LILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--KVELV-NGQVLEIDS 317 (408)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~v~~~-~g~~~~~D~ 317 (408)
.+.+++.+|+++.+ +.+++.+ .+.+. ++.++++|.
T Consensus 206 ----------------------------------------~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~ 245 (441)
T PRK08010 206 ----------------------------------------ATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDA 245 (441)
T ss_pred ----------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCE
Confidence 23345567888766 7777542 33332 234589999
Q ss_pred EEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHHHHH
Q 035488 318 VVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALDIAK 384 (408)
Q Consensus 318 vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~ 384 (408)
|++|+|.+|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||++.+. .|..+|+.++.+|.+
T Consensus 246 vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 246 LLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred EEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 99999999998433 445566 4678999888 467899999999999998654 677889999999865
No 19
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.6e-32 Score=278.79 Aligned_cols=282 Identities=18% Similarity=0.170 Sum_probs=200.8
Q ss_pred CCcEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQ----GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDI 95 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
++|||||+|+||+.+|..|+++ +++|+||++++.++ |.+..+... +..............+..+.++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~~--~~~~~~~~l~~~~~~~~~~~gI 74 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSSY--FSHHTAEELSLVREGFYEKHGI 74 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchHh--HcCCCHHHccCCCHHHHHhCCC
Confidence 4799999999999999999875 47999999998764 444332211 1010000000111233446689
Q ss_pred cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC----
Q 035488 96 NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG---- 171 (408)
Q Consensus 96 ~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~---- 171 (408)
+++.+++|+.++... +. |++.++ ..+.||+|||||| +.|..|++||.+... ++......+.
T Consensus 75 ~~~~g~~V~~Id~~~--~~--V~~~~G-------~~i~yD~LVIATG--s~p~~p~ipG~~~~~--v~~~rt~~d~~~l~ 139 (847)
T PRK14989 75 KVLVGERAITINRQE--KV--IHSSAG-------RTVFYDKLIMATG--SYPWIPPIKGSETQD--CFVYRTIEDLNAIE 139 (847)
T ss_pred EEEcCCEEEEEeCCC--cE--EEECCC-------cEEECCEEEECCC--CCcCCCCCCCCCCCC--eEEECCHHHHHHHH
Confidence 999999999998754 33 666554 5799999999999 788889999876422 2221111111
Q ss_pred -CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 035488 172 -ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLIL 250 (408)
Q Consensus 172 -~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (408)
....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ ++++.... .+....
T Consensus 140 ~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld----~~~~~~---------------------- 192 (847)
T PRK14989 140 ACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLD----QMGGEQ---------------------- 192 (847)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcC----HHHHHH----------------------
Confidence 11357899999999999999999999999999999988 55442211 011111
Q ss_pred hhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC------eEEEecCcEEccCEEEEcC
Q 035488 251 GNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG------KVELVNGQVLEIDSVVLAT 322 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~------~v~~~~g~~~~~D~vi~at 322 (408)
..+.+++.+|+++.+ ++++.++ .+.+.+|+++++|+||+|+
T Consensus 193 -------------------------------l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 193 -------------------------------LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred -------------------------------HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 123345567888877 6777532 3677899999999999999
Q ss_pred CCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC-------ccchhhHHHHHHHHHHH
Q 035488 323 GYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGL-------SGASLDAMSVALDIAKS 385 (408)
Q Consensus 323 G~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~-------~~a~~~a~~~a~~i~~~ 385 (408)
|++|++ .|++..++ .+.+|.+++| +.++|+.|+|||+|||+... ..|..||+.+|.+|.+.
T Consensus 242 G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 242 GIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred CcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence 999998 67777777 5677889888 57889999999999998542 15678999999998764
No 20
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=7.4e-33 Score=264.90 Aligned_cols=293 Identities=17% Similarity=0.178 Sum_probs=199.2
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcc
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDIN 96 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
+.+++|||||||+||+.+|..|.+.+++|+|||+++.+- |.+................ ..+.......+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~l~~~~~g~~~~~~~~--~~~~~~~~~~~~~ 78 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPLLPQTTTGTLEFRSIC--EPVRPALAKLPNR 78 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhhHHHhcccCCChHHhH--HHHHHHhccCCeE
Confidence 446799999999999999999987789999999988532 3222211111110100000 0011122234544
Q ss_pred ccccceeEEEEEcCCCCcEEEEEeecC----CCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC--
Q 035488 97 PRFNETVQSAKYDETFGFWRIKTISSS----DSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS-- 170 (408)
Q Consensus 97 ~~~~~~V~~i~~~~~~~~~~V~~~~~~----~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~-- 170 (408)
+ ...+|++|+..+ +.+.+...+.+ .+. .++.||+||+||| +.+..|.+||..+.. +..+.+.+
T Consensus 79 ~-i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g---~~i~yD~LViAtG--s~~~~~~ipG~~e~~---~~~~~~~~a~ 147 (424)
T PTZ00318 79 Y-LRAVVYDVDFEE--KRVKCGVVSKSNNANVNT---FSVPYDKLVVAHG--ARPNTFNIPGVEERA---FFLKEVNHAR 147 (424)
T ss_pred E-EEEEEEEEEcCC--CEEEEecccccccccCCc---eEecCCEEEECCC--cccCCCCCCCHHHcC---CCCCCHHHHH
Confidence 4 457999998776 66444221110 111 5799999999999 777888888875321 11111100
Q ss_pred --------------C------CCCCCCeEEEEccCCcHHHHHHHHhc--------------cCCccEEEEecCceeeccc
Q 035488 171 --------------G------ASYRGKRVLVVGCGNSGMEVSLDLCN--------------HNAKPSMVVRSSVHVLPRE 216 (408)
Q Consensus 171 --------------~------~~~~~~~v~VvG~G~~a~e~a~~l~~--------------~g~~V~~~~r~~~~~~p~~ 216 (408)
. .....++++|||+|.+|+|+|..|+. .+.+|+++++.+ .++|..
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~ll~~~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS-EVLGSF 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC-cccccC
Confidence 0 01123589999999999999999986 367899999887 454532
Q ss_pred ccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC
Q 035488 217 VLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG 296 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 296 (408)
.. +.... ..+.+++.+|+++.+
T Consensus 227 ~~-----~~~~~-----------------------------------------------------~~~~L~~~gV~v~~~ 248 (424)
T PTZ00318 227 DQ-----ALRKY-----------------------------------------------------GQRRLRRLGVDIRTK 248 (424)
T ss_pred CH-----HHHHH-----------------------------------------------------HHHHHHHCCCEEEeC
Confidence 21 11211 234455678898876
Q ss_pred --ccEEeCCeEEEecCcEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-----C
Q 035488 297 --IKKFSPGKVELVNGQVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRG-----L 368 (408)
Q Consensus 297 --i~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~-----~ 368 (408)
|++++++.+.+.+|+++++|.+|+++|.+|+ .+++.+++ .+++|++.+|..++.++.|||||+|||+.. +
T Consensus 249 ~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~--~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~ 326 (424)
T PTZ00318 249 TAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG--PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLP 326 (424)
T ss_pred CeEEEEeCCEEEECCCCEEEccEEEEccCCCCc--chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCC
Confidence 8899998999999999999999999999998 46666665 466899999855445799999999999862 2
Q ss_pred c---cchhhHHHHHHHHHHHhhHHh
Q 035488 369 S---GASLDAMSVALDIAKSWKEET 390 (408)
Q Consensus 369 ~---~a~~~a~~~a~~i~~~~~~~~ 390 (408)
. .|..||+.+|.+|.+.+.+.+
T Consensus 327 ~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 327 TLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 578999999999999998754
No 21
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-32 Score=259.15 Aligned_cols=276 Identities=20% Similarity=0.304 Sum_probs=192.1
Q ss_pred CCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCC-----CCCCCCc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPED-----FPRVPHQ 92 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 92 (408)
++|||||||+||+++|..|++.+ .+|+||++++... |....+ +..+ .....+.+ ..++..+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--~~~~---~~~~~~~~~~~~~~~~~~~~ 70 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--SHVF---SQGQRADDLTRQSAGEFAEQ 70 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--cHHH---hCCCCHHHhhcCCHHHHHHh
Confidence 58999999999999999999874 6899999987532 322211 0000 01000111 1123346
Q ss_pred cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC--
Q 035488 93 FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS-- 170 (408)
Q Consensus 93 ~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~-- 170 (408)
++++++.+++|++++... +. |++.. ..+.||+||+||| +.|..|++||.+. +++.....+
T Consensus 71 ~gv~~~~~~~V~~id~~~--~~--v~~~~--------~~~~yd~LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~ 132 (377)
T PRK04965 71 FNLRLFPHTWVTDIDAEA--QV--VKSQG--------NQWQYDKLVLATG--ASAFVPPIPGREL----MLTLNSQQEYR 132 (377)
T ss_pred CCCEEECCCEEEEEECCC--CE--EEECC--------eEEeCCEEEECCC--CCCCCCCCCCCce----EEEECCHHHHH
Confidence 688888899999998765 33 55432 5899999999999 6788888988653 222221111
Q ss_pred ---CCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHH
Q 035488 171 ---GASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILAR 247 (408)
Q Consensus 171 ---~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (408)
.....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.... ......
T Consensus 133 ~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~~----~~~~~~------------------- 188 (377)
T PRK04965 133 AAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLMP----PEVSSR------------------- 188 (377)
T ss_pred HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhCC----HHHHHH-------------------
Confidence 111257899999999999999999999999999999987 44332211 011111
Q ss_pred HHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC----eEEEecCcEEccCEEEEc
Q 035488 248 LILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG----KVELVNGQVLEIDSVVLA 321 (408)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~~g~~~~~D~vi~a 321 (408)
..+.+++.+|+++.+ +.+++.+ .+.+.+|+++++|.||+|
T Consensus 189 ----------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 189 ----------------------------------LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred ----------------------------------HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEEC
Confidence 123344556777755 7777643 266788999999999999
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC-------ccchhhHHHHHHHHHHHh
Q 035488 322 TGYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL-------SGASLDAMSVALDIAKSW 386 (408)
Q Consensus 322 tG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~-------~~a~~~a~~~a~~i~~~~ 386 (408)
+|.+|+. .+++..++..++| +++| +.++|+.|+|||+|||+... ..|..||+.+|.+|.+.-
T Consensus 235 ~G~~p~~-~l~~~~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 235 AGLRPNT-ALARRAGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred cCCCcch-HHHHHCCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 9999998 6777777755566 6677 46789999999999997531 257889999999998743
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.5e-32 Score=263.89 Aligned_cols=287 Identities=20% Similarity=0.242 Sum_probs=189.8
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeee-------cCCc-cccCCCCCCCCCC----
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLH-------LPKQ-FCQLPNFPFPEDF---- 86 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~-------~~~~-~~~~~~~~~~~~~---- 86 (408)
|||+||||||+|++||..|+++|.+|+|||+.+ +||+|-. ...+.-.+. .... .+.........++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 8887632 112211100 0000 0000000000011
Q ss_pred ---------------CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC
Q 035488 87 ---------------PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE 151 (408)
Q Consensus 87 ---------------~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~ 151 (408)
...+++.++++..+ ++..+ +.++|++.++ . ..+.||+||+||| +.|..|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~------~~~~v~v~~g---~---~~~~~~~lIiATG--s~p~~p~ 144 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK------DPKTVKVDLG---R---EVRGAKRFLIATG--ARPAIPP 144 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc------cCCEEEEcCC---e---EEEEeCEEEEcCC--CCCCCCC
Confidence 01122334444332 22221 1233655432 1 4689999999999 7888899
Q ss_pred CCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHh
Q 035488 152 FEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMK 231 (408)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ 231 (408)
+||.+.. .+++..+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++|..+. ++...+
T Consensus 145 i~G~~~~--~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~l-- 213 (463)
T TIGR02053 145 IPGLKEA--GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP-----EISAAV-- 213 (463)
T ss_pred CCCcccC--ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH-----HHHHHH--
Confidence 9987653 23333333222 2246899999999999999999999999999999988 56554432 222211
Q ss_pred hcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--e--E
Q 035488 232 YFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--K--V 305 (408)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~--v 305 (408)
.+.+++.+|+++.+ +.+++.+ . +
T Consensus 214 ---------------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~~~v 242 (463)
T TIGR02053 214 ---------------------------------------------------EEALAEEGIEVVTSAQVKAVSVRGGGKII 242 (463)
T ss_pred ---------------------------------------------------HHHHHHcCCEEEcCcEEEEEEEcCCEEEE
Confidence 22334456777766 6666532 2 3
Q ss_pred EEe---cCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 306 ELV---NGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 306 ~~~---~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
.+. +++++++|.||+|+|++|+...+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..||+.
T Consensus 243 ~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~ 321 (463)
T TIGR02053 243 TVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVV 321 (463)
T ss_pred EEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHH
Confidence 332 23579999999999999999545 666666 5678999988 567899999999999987654 78899999
Q ss_pred HHHHHHHH
Q 035488 378 VALDIAKS 385 (408)
Q Consensus 378 ~a~~i~~~ 385 (408)
+|.+|.+.
T Consensus 322 aa~ni~~~ 329 (463)
T TIGR02053 322 AAENALGG 329 (463)
T ss_pred HHHHhcCC
Confidence 99999764
No 23
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=6.5e-32 Score=261.89 Aligned_cols=286 Identities=17% Similarity=0.201 Sum_probs=190.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeee-ec--------CCccccCCCC-CCCCCC-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKL-HL--------PKQFCQLPNF-PFPEDF- 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~-~~--------~~~~~~~~~~-~~~~~~- 86 (408)
.+||+||||||+|++||..|+++|++|+|||+. .+||.+. ....+.-.+ .. ....+.++.. ....++
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 479999999999999999999999999999986 5677542 221111000 00 0000111100 000011
Q ss_pred -----------------CCCCCcc-CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 87 -----------------PRVPHQF-DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 87 -----------------~~~~~~~-~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
..++++. +++++.++.+. + +. + +|++.. .+++||+|||||| +.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~--~~--~--~v~v~~--------~~~~~d~lViATG--s~p~ 146 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E--SP--N--TVRVGG--------ETLRAKRIFINTG--ARAA 146 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c--cC--C--EEEECc--------EEEEeCEEEEcCC--CCCC
Confidence 1111233 55555554331 1 11 2 255532 5799999999999 7889
Q ss_pred CCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHH
Q 035488 149 EPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVL 228 (408)
Q Consensus 149 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~ 228 (408)
.|++||.+.. .+++..+..+. ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+. ++...
T Consensus 147 ~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~-----~~~~~ 217 (463)
T PRK06370 147 IPPIPGLDEV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE-----DVAAA 217 (463)
T ss_pred CCCCCCCCcC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH-----HHHHH
Confidence 9999987642 23444333322 2357899999999999999999999999999999988 55554332 22211
Q ss_pred HHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--e
Q 035488 229 MMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--K 304 (408)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~ 304 (408)
+ .+.+++.+|+++.+ +.+++.. +
T Consensus 218 l-----------------------------------------------------~~~l~~~GV~i~~~~~V~~i~~~~~~ 244 (463)
T PRK06370 218 V-----------------------------------------------------REILEREGIDVRLNAECIRVERDGDG 244 (463)
T ss_pred H-----------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCCE
Confidence 1 23344557777766 6777543 2
Q ss_pred --EEEe---cCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhh
Q 035488 305 --VELV---NGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLD 374 (408)
Q Consensus 305 --v~~~---~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~ 374 (408)
+.+. +++++++|.||+|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..|
T Consensus 245 ~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~ 323 (463)
T PRK06370 245 IAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYND 323 (463)
T ss_pred EEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHH
Confidence 3332 34579999999999999998435 566666 5678989888 567899999999999987654 67899
Q ss_pred HHHHHHHHHHH
Q 035488 375 AMSVALDIAKS 385 (408)
Q Consensus 375 a~~~a~~i~~~ 385 (408)
|+.+|.+|.+.
T Consensus 324 g~~aa~ni~~~ 334 (463)
T PRK06370 324 ARIVAANLLDG 334 (463)
T ss_pred HHHHHHHHhCC
Confidence 99999999754
No 24
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-31 Score=250.50 Aligned_cols=298 Identities=34% Similarity=0.520 Sum_probs=223.0
Q ss_pred ccccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCC--------C-CCCeeeecCCccccCCCCCCCCCC
Q 035488 16 CIWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNR--------T-YDRLKLHLPKQFCQLPNFPFPEDF 86 (408)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (408)
+++.++|+|||||||||++|+.|.+.|++++++||.+++||+|.+. . |..+++++++..+.++++++++++
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 4567899999999999999999999999999999999999999876 4 999999999999999999999886
Q ss_pred CCC-CC-------------ccCc--cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 87 PRV-PH-------------QFDI--NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 87 ~~~-~~-------------~~~~--~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
+++ +. ++++ .++++++|..++...+ +.|.|.+.+..+.. .+.-+|.|++|||.+..|.+|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~---~~~ifd~VvVctGh~~~P~~P 158 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQI---EEEIFDAVVVCTGHYVEPRIP 158 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcce---eEEEeeEEEEcccCcCCCCCC
Confidence 655 22 6665 4688888888887763 58999998875532 578999999999988669999
Q ss_pred CCCC--CCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC-ceeecccccCCchHHHHH
Q 035488 151 EFEG--LQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS-VHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 151 ~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~-~~~~p~~~~~~~~~~~~~ 227 (408)
.++| .+.+.|.++|+.+|.....+.+|+|+|||+|+||+|++.+++...++|.+..+++ ....+..
T Consensus 159 ~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~----------- 227 (448)
T KOG1399|consen 159 QIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE----------- 227 (448)
T ss_pred cCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc-----------
Confidence 9988 5689999999999999999999999999999999999999999888888876510 0010100
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecCccEEeCCe-EE
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPGIKKFSPGK-VE 306 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~-v~ 306 (408)
....++..+..|..+++++ +.
T Consensus 228 ----------------------------------------------------------~~~~~~~~~~~i~~~~e~~~~~ 249 (448)
T KOG1399|consen 228 ----------------------------------------------------------ILGENLWQVPSIKSFTEDGSVF 249 (448)
T ss_pred ----------------------------------------------------------eeecceEEccccccccCcceEE
Confidence 0112334444467777777 45
Q ss_pred EecCcEEccCEEEEcCCCCCCCCCcccccc--cccC-CCCCCCCCCCCCCCCCceEEEeecc--ccCccchhhHHHHHHH
Q 035488 307 LVNGQVLEIDSVVLATGYRSNVPSWLKENE--FFSE-NGIPKNPFPNGWKGKTGLYAVGFTK--RGLSGASLDAMSVALD 381 (408)
Q Consensus 307 ~~~g~~~~~D~vi~atG~~~~~~~l~~~~~--~~~~-~g~~~~~~~~~~t~~~~iya~Gd~~--~~~~~a~~~a~~~a~~ 381 (408)
+.++....+|.||+|||+.-.. .+++... ...+ ...++..+-......++...+|.-- ..+.....|+++++..
T Consensus 250 ~~~~~~~~~D~ii~ctgy~y~f-Pfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v 328 (448)
T KOG1399|consen 250 EKGGPVERVDRIIFCTGYKYKF-PFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAV 328 (448)
T ss_pred EcCceeEEeeeEEEeeeeEeec-ceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhh
Confidence 5666788999999999999987 4555443 2222 2122221100001233444444221 3344778899999998
Q ss_pred HHHHhh
Q 035488 382 IAKSWK 387 (408)
Q Consensus 382 i~~~~~ 387 (408)
+.+...
T Consensus 329 ~~G~~~ 334 (448)
T KOG1399|consen 329 LEGRLK 334 (448)
T ss_pred hcCCCc
Confidence 888754
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.4e-31 Score=259.56 Aligned_cols=290 Identities=18% Similarity=0.184 Sum_probs=190.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeee-------ecCCc---cccCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKL-------HLPKQ---FCQLPNFPFPEDFP 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~ 87 (408)
.+||+||||||+|++||..|++.|.+|+|||+. .+||+|.. ...+.-.+ ...+. ...++......++.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 579999999999999999999999999999986 68998753 11111110 00000 00111000000111
Q ss_pred CCC-------------------Cc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 88 RVP-------------------HQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 88 ~~~-------------------~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
... .. .++++.. .+|..++. +.|.|++.++. . .+++||+||+||| +.|
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~-g~v~~id~----~~~~V~~~~g~--~---~~~~~d~lViATG--s~p 152 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLN-GEARFVDE----RTLTVTLNDGG--E---QTVHFDRAFIGTG--ARP 152 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEE-EEEEEecC----CEEEEEecCCC--e---EEEECCEEEEeCC--CCC
Confidence 000 01 1333333 34555532 45777776531 1 4799999999999 788
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
..|++||.+.. .+++..+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|..+. ++..
T Consensus 153 ~~p~i~G~~~~--~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~-----~~~~ 222 (468)
T PRK14694 153 AEPPVPGLAET--PYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP-----AVGE 222 (468)
T ss_pred CCCCCCCCCCC--ceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH-----HHHH
Confidence 88999987643 23333322221 234789999999999999999999999999999863 34443322 2222
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-- 303 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 303 (408)
.+ .+.+++.+|+++.+ +.+++.+
T Consensus 223 ~l-----------------------------------------------------~~~l~~~GI~v~~~~~v~~i~~~~~ 249 (468)
T PRK14694 223 AI-----------------------------------------------------EAAFRREGIEVLKQTQASEVDYNGR 249 (468)
T ss_pred HH-----------------------------------------------------HHHHHhCCCEEEeCCEEEEEEEcCC
Confidence 22 23344557777766 6666532
Q ss_pred eEEE-ecCcEEccCEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 304 KVEL-VNGQVLEIDSVVLATGYRSNVPSW-LKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 304 ~v~~-~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
.+.+ .++.++++|.||+|+|.+|+...+ ++..++...+|++.+| +.++|+.|+|||+|||+..+. .|..+|+.+
T Consensus 250 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~a 328 (468)
T PRK14694 250 EFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRA 328 (468)
T ss_pred EEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHHH
Confidence 2222 244579999999999999998333 3445665668888888 567899999999999987554 678899999
Q ss_pred HHHHHHH
Q 035488 379 ALDIAKS 385 (408)
Q Consensus 379 a~~i~~~ 385 (408)
|.+|.+.
T Consensus 329 a~~i~~~ 335 (468)
T PRK14694 329 AINMTGG 335 (468)
T ss_pred HHHhcCC
Confidence 9999753
No 26
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=4.2e-32 Score=257.95 Aligned_cols=282 Identities=17% Similarity=0.181 Sum_probs=190.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCC-CCCCCCCCCCccCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV--PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFP-FPEDFPRVPHQFDI 95 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 95 (408)
.++|||||||+||++||..|+++|. +|+|+++++.++ |....+ ++.+....... ....-.++..+.++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~~~~~~~~~~~~~~~~~~~~i 73 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLLEDSPQLQQVLPANWWQENNV 73 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHCCCCccccccCCHHHHHHCCC
Confidence 4589999999999999999999986 899999987654 322111 11110000000 00000122335588
Q ss_pred cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC----
Q 035488 96 NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG---- 171 (408)
Q Consensus 96 ~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~---- 171 (408)
+++.++.|..++... .. |++.++ .++.||+||+||| +.|..+++++... ..++......+.
T Consensus 74 ~~~~g~~V~~id~~~--~~--v~~~~g-------~~~~yd~LViATG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~ 138 (396)
T PRK09754 74 HLHSGVTIKTLGRDT--RE--LVLTNG-------ESWHWDQLFIATG--AAARPLPLLDALG--ERCFTLRHAGDAARLR 138 (396)
T ss_pred EEEcCCEEEEEECCC--CE--EEECCC-------CEEEcCEEEEccC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHH
Confidence 888899999998765 33 666554 5799999999999 6666555554321 122322111111
Q ss_pred -CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 035488 172 -ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLIL 250 (408)
Q Consensus 172 -~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (408)
....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.... .+....
T Consensus 139 ~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~----~~~~~~---------------------- 191 (396)
T PRK09754 139 EVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAP----PPVQRY---------------------- 191 (396)
T ss_pred HHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcC----HHHHHH----------------------
Confidence 11257899999999999999999999999999999887 44332211 011111
Q ss_pred hhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC-e--EEEecCcEEccCEEEEcCCCC
Q 035488 251 GNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-K--VELVNGQVLEIDSVVLATGYR 325 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-~--v~~~~g~~~~~D~vi~atG~~ 325 (408)
..+.+++.+|+++.+ +++++.+ . +.+.+|+.+++|.||+++|.+
T Consensus 192 -------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 192 -------------------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred -------------------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCC
Confidence 123334557777766 7777643 2 567789999999999999999
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC------------ccchhhHHHHHHHHHHH
Q 035488 326 SNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL------------SGASLDAMSVALDIAKS 385 (408)
Q Consensus 326 ~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~------------~~a~~~a~~~a~~i~~~ 385 (408)
|+. .|++..++..+ +.+++| +.++|+.|+|||+|||+... ..|..||+.+|.+|.+.
T Consensus 241 pn~-~l~~~~gl~~~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~ 309 (396)
T PRK09754 241 AND-QLAREANLDTA-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGL 309 (396)
T ss_pred hhh-HHHHhcCCCcC-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCC
Confidence 997 67777776443 447777 46779999999999987421 25788999999999864
No 27
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-31 Score=259.50 Aligned_cols=289 Identities=21% Similarity=0.260 Sum_probs=186.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeeecC-------Cccc--cCCCCCCCCCCC-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLHLP-------KQFC--QLPNFPFPEDFP- 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~- 87 (408)
.+||+||||||||++||..|+++|.+|+|||++. +||+|. ....+...+... .... .........++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKK 82 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHH
Confidence 4799999999999999999999999999999987 899753 333332111100 0000 000000000111
Q ss_pred --C---------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 88 --R---------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 88 --~---------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
+ .+.+.++++..+ +++.++. +.++|...++ . ..++||+||+||| +.|..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~----~~~~v~~~~~---~---~~~~~d~lViAtG--s~p~~~ 149 (462)
T PRK06416 83 VQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDP----NTVRVMTEDG---E---QTYTAKNIILATG--SRPREL 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC----CEEEEecCCC---c---EEEEeCEEEEeCC--CCCCCC
Confidence 1 111345555443 3333321 3333433221 1 5799999999999 556543
Q ss_pred CCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHH
Q 035488 151 EFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMM 230 (408)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 230 (408)
||.+.....+++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+. ++...+
T Consensus 150 --pg~~~~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~l- 219 (462)
T PRK06416 150 --PGIEIDGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK-----EISKLA- 219 (462)
T ss_pred --CCCCCCCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH-----HHHHHH-
Confidence 444321112333332222 22357899999999999999999999999999999988 55554332 222211
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--e--
Q 035488 231 KYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--K-- 304 (408)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~-- 304 (408)
.+.+++.+|+++.+ +.+++.+ .
T Consensus 220 ----------------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~~v~ 247 (462)
T PRK06416 220 ----------------------------------------------------ERALKKRGIKIKTGAKAKKVEQTDDGVT 247 (462)
T ss_pred ----------------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEE
Confidence 22344557888776 7777643 3
Q ss_pred EEEecC---cEEccCEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 305 VELVNG---QVLEIDSVVLATGYRSNVPSW-LKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 305 v~~~~g---~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
+.+.++ +++++|.||+|+|++|+...+ ++..++..++|++.+| +..+|+.|+|||+|||+..+. .|..||+.
T Consensus 248 v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~ 326 (462)
T PRK06416 248 VTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGII 326 (462)
T ss_pred EEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHH
Confidence 344555 679999999999999998333 3556663338888888 466799999999999986543 68899999
Q ss_pred HHHHHHH
Q 035488 378 VALDIAK 384 (408)
Q Consensus 378 ~a~~i~~ 384 (408)
+|.+|.+
T Consensus 327 aa~ni~~ 333 (462)
T PRK06416 327 AAEAIAG 333 (462)
T ss_pred HHHHHcC
Confidence 9999986
No 28
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=1.7e-31 Score=258.46 Aligned_cols=290 Identities=15% Similarity=0.144 Sum_probs=184.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeee-cC------Ccc--ccCCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLH-LP------KQF--CQLPNFPFPEDFPR 88 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~-~~------~~~--~~~~~~~~~~~~~~ 88 (408)
.+||+||||||+|++||..|++.|.+|+|||+.+.+||++. ...++.-.+. .. ... +.........++..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK 83 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 57999999999999999999999999999999888898652 2223321110 00 000 00000000001111
Q ss_pred C------------------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCC-C
Q 035488 89 V------------------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKI-E 149 (408)
Q Consensus 89 ~------------------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~-~ 149 (408)
. +++.+++++.+ ++.-++ . +.+.|+..+ +.. .+++||+|||||| ++|. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~--~~v~v~~~~--g~~---~~~~~d~lViATG--s~p~~~ 151 (471)
T PRK06467 84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--G--NTLEVTGED--GKT---TVIEFDNAIIAAG--SRPIQL 151 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--C--CEEEEecCC--Cce---EEEEcCEEEEeCC--CCCCCC
Confidence 1 11234555443 222221 1 343343322 212 5799999999999 6665 3
Q ss_pred CCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHH
Q 035488 150 PEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLM 229 (408)
Q Consensus 150 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 229 (408)
|.+++.. ..++.+.+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+. ++...+
T Consensus 152 p~~~~~~---~~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~-----~~~~~~ 221 (471)
T PRK06467 152 PFIPHDD---PRIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK-----DIVKVF 221 (471)
T ss_pred CCCCCCC---CcEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----HHHHHH
Confidence 4444422 123433333332 2356899999999999999999999999999999988 56665443 322222
Q ss_pred HhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCe-
Q 035488 230 MKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGK- 304 (408)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~- 304 (408)
.. .+++. ++++.+ +.+++ ++.
T Consensus 222 ~~-----------------------------------------------------~l~~~-v~i~~~~~v~~i~~~~~~~ 247 (471)
T PRK06467 222 TK-----------------------------------------------------RIKKQ-FNIMLETKVTAVEAKEDGI 247 (471)
T ss_pred HH-----------------------------------------------------HHhhc-eEEEcCCEEEEEEEcCCEE
Confidence 22 22233 555555 55554 233
Q ss_pred -EEEecC----cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhh
Q 035488 305 -VELVNG----QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLD 374 (408)
Q Consensus 305 -v~~~~g----~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~ 374 (408)
+.+.++ +++++|.||+++|++|++..+ ++..++ .+++|++.+| +.++|+.|+|||+|||++.+. .|..|
T Consensus 248 ~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~e 326 (471)
T PRK06467 248 YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHE 326 (471)
T ss_pred EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHH
Confidence 333332 469999999999999998433 344566 5678999888 567899999999999986543 78899
Q ss_pred HHHHHHHHHHH
Q 035488 375 AMSVALDIAKS 385 (408)
Q Consensus 375 a~~~a~~i~~~ 385 (408)
|+.+|.+|.+.
T Consensus 327 G~~aa~~i~g~ 337 (471)
T PRK06467 327 GHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHcCC
Confidence 99999999763
No 29
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.98 E-value=1.9e-31 Score=257.35 Aligned_cols=290 Identities=14% Similarity=0.152 Sum_probs=187.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-CCCEEEEecC--------CCCCC--ccCCCCCCCeeeecC------Cc--cccCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-GVPFIILERA--------NCIAS--LWQNRTYDRLKLHLP------KQ--FCQLPN 79 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~--------~~~gg--~w~~~~~~~~~~~~~------~~--~~~~~~ 79 (408)
.+||+||||||+|..||..+++. |.+|+|||++ ..+|| .+.-+.......... +. .+.+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 57999999999999999999997 9999999984 46888 333322222111110 00 000000
Q ss_pred --CCCCCCCCCC------------------CCc-cCccccccceeEEEEEcCCCCcEEEEEee---cCCCCcceEEEEeC
Q 035488 80 --FPFPEDFPRV------------------PHQ-FDINPRFNETVQSAKYDETFGFWRIKTIS---SSDSSFCEVEYICR 135 (408)
Q Consensus 80 --~~~~~~~~~~------------------~~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~---~~~~~~~~~~i~ad 135 (408)
.....+|... ++. .++++..+. .. -.+. +. |++.. +.+.+ ..+++||
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~--f~~~--~~--v~V~~~~~~~~~~--~~~~~~d 153 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GA--LEDK--NV--VLVRESADPKSAV--KERLQAE 153 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EE--EccC--CE--EEEeeccCCCCCc--ceEEECC
Confidence 0000111111 111 134433322 11 1111 33 44432 11111 1579999
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhcc---CCccEEEEecCcee
Q 035488 136 WLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNH---NAKPSMVVRSSVHV 212 (408)
Q Consensus 136 ~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~V~~~~r~~~~~ 212 (408)
+|||||| +.|..|++||.+. +....+... ....+++++|||+|.+|+|+|..+..+ |.+|+++.+.+ .+
T Consensus 154 ~lIIATG--s~p~~p~i~G~~~----~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~i 225 (486)
T TIGR01423 154 HILLATG--SWPQMLGIPGIEH----CISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MI 225 (486)
T ss_pred EEEEecC--CCCCCCCCCChhh----eechhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-cc
Confidence 9999999 7788888988653 122222222 123578999999999999999877654 89999999988 55
Q ss_pred ecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeE
Q 035488 213 LPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIK 292 (408)
Q Consensus 213 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 292 (408)
+|..+. ++...+ .+.+++.+|+
T Consensus 226 l~~~d~-----~~~~~l-----------------------------------------------------~~~L~~~GI~ 247 (486)
T TIGR01423 226 LRGFDS-----TLRKEL-----------------------------------------------------TKQLRANGIN 247 (486)
T ss_pred ccccCH-----HHHHHH-----------------------------------------------------HHHHHHcCCE
Confidence 565443 222222 2334455777
Q ss_pred EecC--ccEEeC--C---eEEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEee
Q 035488 293 VVPG--IKKFSP--G---KVELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGF 363 (408)
Q Consensus 293 ~~~~--i~~~~~--~---~v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd 363 (408)
++.+ +++++. + .+.+.+++++++|.|++|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+||
T Consensus 248 i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GD 326 (486)
T TIGR01423 248 IMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAIGD 326 (486)
T ss_pred EEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEeee
Confidence 7776 667753 1 3566678899999999999999998433 455566 4678999888 467799999999999
Q ss_pred ccccCc---cchhhHHHHHHHHHH
Q 035488 364 TKRGLS---GASLDAMSVALDIAK 384 (408)
Q Consensus 364 ~~~~~~---~a~~~a~~~a~~i~~ 384 (408)
|++.+. .|..||+.+|.+|.+
T Consensus 327 v~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 327 VTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhC
Confidence 998654 788999999999975
No 30
>PRK14727 putative mercuric reductase; Provisional
Probab=99.98 E-value=6.2e-31 Score=255.36 Aligned_cols=296 Identities=16% Similarity=0.155 Sum_probs=187.5
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeeecC---------CccccCCCCCCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLHLP---------KQFCQLPNFPFPEDFP 87 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 87 (408)
..+||+||||||+|+++|..|+++|.+|++||+.+.+||+|.. ...+...+... ..+..+.....+.++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 4689999999999999999999999999999998889998853 22222211100 0111111000000110
Q ss_pred CCCC-------cc---Cccccc--cceeEEEE----EcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC
Q 035488 88 RVPH-------QF---DINPRF--NETVQSAK----YDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE 151 (408)
Q Consensus 88 ~~~~-------~~---~~~~~~--~~~V~~i~----~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~ 151 (408)
.... +. ...-.+ ...|.-+. ..+ .+.+.|+..++ .. .+++||+|||||| +.|..|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g--~~---~~~~~d~lViATG--s~p~~p~ 166 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDG--GE---RVLAADRCLIATG--STPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCC--ce---EEEEeCEEEEecC--CCCCCCC
Confidence 0000 00 000000 01122111 111 14555655432 11 4799999999999 7888999
Q ss_pred CCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHh
Q 035488 152 FEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMK 231 (408)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ 231 (408)
+||.... ...+..+.... ...+++++|||+|.+|+|+|..+...|.+|+++.+. .+++..+. ++...+
T Consensus 167 i~G~~~~--~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~-----~~~~~l-- 234 (479)
T PRK14727 167 IPGLMDT--PYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP-----LLGETL-- 234 (479)
T ss_pred CCCcCcc--ceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH-----HHHHHH--
Confidence 9987532 12222222211 234689999999999999999999999999999874 34443322 222211
Q ss_pred hcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCeEEE
Q 035488 232 YFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGKVEL 307 (408)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~v~~ 307 (408)
.+.+++.+|+++.+ +.+++ ++.+.+
T Consensus 235 ---------------------------------------------------~~~L~~~GV~i~~~~~V~~i~~~~~~~~v 263 (479)
T PRK14727 235 ---------------------------------------------------TACFEKEGIEVLNNTQASLVEHDDNGFVL 263 (479)
T ss_pred ---------------------------------------------------HHHHHhCCCEEEcCcEEEEEEEeCCEEEE
Confidence 23344557777766 66664 233322
Q ss_pred -ecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHH
Q 035488 308 -VNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALD 381 (408)
Q Consensus 308 -~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~ 381 (408)
.++.++++|.||+|+|+.|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..||+.+|.+
T Consensus 264 ~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~ 342 (479)
T PRK14727 264 TTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGIN 342 (479)
T ss_pred EEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHH
Confidence 233468999999999999998433 455566 5668889888 467899999999999997544 678999999999
Q ss_pred HHHH
Q 035488 382 IAKS 385 (408)
Q Consensus 382 i~~~ 385 (408)
|.+.
T Consensus 343 i~g~ 346 (479)
T PRK14727 343 MTGG 346 (479)
T ss_pred HcCC
Confidence 9754
No 31
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.98 E-value=1.4e-31 Score=257.94 Aligned_cols=292 Identities=19% Similarity=0.217 Sum_probs=185.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC-CCCcc-CCCCCCCeeeecCCc----cccCCCC------CCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC-IASLW-QNRTYDRLKLHLPKQ----FCQLPNF------PFPEDF 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~-~gg~w-~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~ 86 (408)
.+||+||||||||++||..|++.|.+|+|||+++. +||+. +....+...+..... +...... .+....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999864 57742 221111111000000 0000000 000000
Q ss_pred CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeecc
Q 035488 87 PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAG 166 (408)
Q Consensus 87 ~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~ 166 (408)
.+.+.+.+++++.++ +..+ +. +. |++..+++ . .++.||+|||||| +.|..|++||..... .+++..
T Consensus 83 ~~~~~~~gV~~~~g~-~~~~--~~--~~--v~v~~~~~-~---~~~~~d~vViATG--s~~~~p~i~G~~~~~-~v~~~~ 148 (438)
T PRK07251 83 YAMLAGSGVDLYDAE-AHFV--SN--KV--IEVQAGDE-K---IELTAETIVINTG--AVSNVLPIPGLADSK-HVYDST 148 (438)
T ss_pred HHHHHhCCCEEEEEE-EEEc--cC--CE--EEEeeCCC-c---EEEEcCEEEEeCC--CCCCCCCCCCcCCCC-cEEchH
Confidence 011123344444322 1111 11 33 54443211 1 5799999999999 678888899875432 233333
Q ss_pred CCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHH
Q 035488 167 DYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILA 246 (408)
Q Consensus 167 ~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 246 (408)
..... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+. ++...+
T Consensus 149 ~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~~----------------- 204 (438)
T PRK07251 149 GIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP-----SVAALA----------------- 204 (438)
T ss_pred HHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH-----HHHHHH-----------------
Confidence 33222 2357899999999999999999999999999999988 55554432 222211
Q ss_pred HHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--eE-EEecCcEEccCEEEEc
Q 035488 247 RLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--KV-ELVNGQVLEIDSVVLA 321 (408)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~v-~~~~g~~~~~D~vi~a 321 (408)
.+.+++.+|+++.+ +.+++.+ .+ ...+++++++|.||+|
T Consensus 205 ------------------------------------~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva 248 (438)
T PRK07251 205 ------------------------------------KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYA 248 (438)
T ss_pred ------------------------------------HHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEe
Confidence 12234557777766 6777543 33 3346778999999999
Q ss_pred CCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHHHHHH
Q 035488 322 TGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALDIAKS 385 (408)
Q Consensus 322 tG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~~ 385 (408)
+|++|+...+ ++..++ .+.+|++.+| +..+|+.|+|||+|||++.+. .|..+|+.++.++.+.
T Consensus 249 ~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 249 TGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred eCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999998433 333444 4667888888 467899999999999998654 5667788888777653
No 32
>PRK13748 putative mercuric reductase; Provisional
Probab=99.98 E-value=5.9e-31 Score=261.56 Aligned_cols=289 Identities=17% Similarity=0.179 Sum_probs=187.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeeecC---------Ccc-ccCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLHLP---------KQF-CQLPNFPFPEDFP 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~ 87 (408)
.+||+||||||+|++||..|+++|.+|+|||++ .+||+|.. ...+...+... ..+ ..........++.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 489999999999999999999999999999997 78998742 22222111000 000 0110000000111
Q ss_pred CC-------------------CCcc-CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 88 RV-------------------PHQF-DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 88 ~~-------------------~~~~-~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
.. +... ++++.. .++..++ . +.+.|+..++ +. .+++||+|||||| +.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~--~--~~~~v~~~~g--~~---~~~~~d~lviAtG--s~p 244 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLH-GEARFKD--D--QTLIVRLNDG--GE---RVVAFDRCLIATG--ASP 244 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEE-EEEEEec--C--CEEEEEeCCC--ce---EEEEcCEEEEcCC--CCC
Confidence 00 0011 222322 1232222 2 4455554332 11 4799999999999 788
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
..|++||.+.. ..++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.. +++..+. ++..
T Consensus 245 ~~p~i~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~-----~~~~ 314 (561)
T PRK13748 245 AVPPIPGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP-----AIGE 314 (561)
T ss_pred CCCCCCCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH-----HHHH
Confidence 89999987642 1222222111 12356899999999999999999999999999998853 4443332 2222
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G 303 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~ 303 (408)
.+ .+.+++.+|+++.+ +.+++. +
T Consensus 315 ~l-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~ 341 (561)
T PRK13748 315 AV-----------------------------------------------------TAAFRAEGIEVLEHTQASQVAHVDG 341 (561)
T ss_pred HH-----------------------------------------------------HHHHHHCCCEEEcCCEEEEEEecCC
Confidence 22 23344557777766 666643 2
Q ss_pred eEEE-ecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 304 KVEL-VNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 304 ~v~~-~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
.+.+ .++.++++|.||+|+|++||+..+ +++.++ .+.+|++.+| +.++|+.|||||+|||+..+. .|..+|+.
T Consensus 342 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~ 420 (561)
T PRK13748 342 EFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTR 420 (561)
T ss_pred EEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHH
Confidence 2322 233469999999999999999443 456666 5678889888 577899999999999987544 68899999
Q ss_pred HHHHHHH
Q 035488 378 VALDIAK 384 (408)
Q Consensus 378 ~a~~i~~ 384 (408)
+|.+|.+
T Consensus 421 aa~~i~g 427 (561)
T PRK13748 421 AAINMTG 427 (561)
T ss_pred HHHHHcC
Confidence 9999975
No 33
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=5.1e-31 Score=255.10 Aligned_cols=291 Identities=17% Similarity=0.192 Sum_probs=180.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-CCCCCCCeeeecCCccc-----------cCCCCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW-QNRTYDRLKLHLPKQFC-----------QLPNFPFPED 85 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 85 (408)
..|||+||||||||++||..++++|.+|+|||+++.+||+. +....+.-.+......+ .... ....+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~ 80 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLN 80 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccC
Confidence 34799999999999999999999999999999877889853 22222211110000000 0000 00001
Q ss_pred CCCCCC------------------ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 86 FPRVPH------------------QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 86 ~~~~~~------------------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+..... +.++++..+. . .+. . ...+.|...++ .. .+++||+|||||| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~--~-~~~v~v~~~~g--~~---~~~~~d~lVIATG--s~p 148 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLD--G-VGKVVVKAEDG--SE---TQLEAKDIVIATG--SEP 148 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEc--c-CCEEEEEcCCC--ce---EEEEeCEEEEeCC--CCC
Confidence 111000 1122222211 0 111 1 13333443332 11 4799999999999 555
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
. .+||.......+++..+.... ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +...
T Consensus 149 ~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~-----~~~~ 219 (466)
T PRK06115 149 T--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT-----ETAK 219 (466)
T ss_pred C--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-----HHHH
Confidence 3 355543211223333333222 2357999999999999999999999999999999988 56554332 2222
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-- 303 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-- 303 (408)
.+ .+.+++.+|+++.+ +.+++++
T Consensus 220 ~l-----------------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~~ 246 (466)
T PRK06115 220 TL-----------------------------------------------------QKALTKQGMKFKLGSKVTGATAGAD 246 (466)
T ss_pred HH-----------------------------------------------------HHHHHhcCCEEEECcEEEEEEEcCC
Confidence 21 23344557788776 6777642
Q ss_pred eE--EEe-----cCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cc
Q 035488 304 KV--ELV-----NGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GA 371 (408)
Q Consensus 304 ~v--~~~-----~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a 371 (408)
++ .+. +++++++|.||+++|++|++..+ ++..++ .+.+|. ++| +.++|+.|+|||+|||+..+. .|
T Consensus 247 ~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~-~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A 324 (466)
T PRK06115 247 GVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGM-LAN-DHHRTSVPGVWVIGDVTSGPMLAHKA 324 (466)
T ss_pred eEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCE-EEC-CCeecCCCCEEEeeecCCCcccHHHH
Confidence 33 222 23579999999999999998434 445455 345674 455 467899999999999997654 67
Q ss_pred hhhHHHHHHHHHHH
Q 035488 372 SLDAMSVALDIAKS 385 (408)
Q Consensus 372 ~~~a~~~a~~i~~~ 385 (408)
..||+.+|++|.+.
T Consensus 325 ~~~g~~aa~~i~~~ 338 (466)
T PRK06115 325 EDEAVACIERIAGK 338 (466)
T ss_pred HHHHHHHHHHHcCC
Confidence 89999999999764
No 34
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.98 E-value=2.5e-31 Score=257.20 Aligned_cols=288 Identities=18% Similarity=0.238 Sum_probs=190.1
Q ss_pred CcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
+|||||||++|+++|..|++++ .+|+|||+++.++ |.....+.. . ...+..+. .......+.+.+.+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~~~~~---~-~~~~~~~~-~~~~~~~~~~~~~gv~~~ 74 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACGLPYF---V-GGFFDDPN-TMIARTPEEFIKSGIDVK 74 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCCCceE---e-ccccCCHH-HhhcCCHHHHHHCCCeEE
Confidence 6999999999999999999985 5999999998653 110000000 0 00000000 000011122335688888
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC-------
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG------- 171 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~------- 171 (408)
++++|++++.+. +. |++.+..++. ...+.||+||+||| ++|..|.+||.+. ..+.+...+.+.
T Consensus 75 ~~~~V~~id~~~--~~--v~~~~~~~~~--~~~~~yd~lviAtG--~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l 144 (444)
T PRK09564 75 TEHEVVKVDAKN--KT--ITVKNLKTGS--IFNDTYDKLMIATG--ARPIIPPIKNINL--ENVYTLKSMEDGLALKELL 144 (444)
T ss_pred ecCEEEEEECCC--CE--EEEEECCCCC--EEEecCCEEEECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHH
Confidence 899999998766 55 4444321111 12344999999999 7788888888653 123333222111
Q ss_pred CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 035488 172 ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILG 251 (408)
Q Consensus 172 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (408)
....+++++|||+|.+|+|+|..+...|.+|+++.+.+ .+++.... .++...+
T Consensus 145 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~----~~~~~~l---------------------- 197 (444)
T PRK09564 145 KDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFD----KEITDVM---------------------- 197 (444)
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcC----HHHHHHH----------------------
Confidence 12357899999999999999999999999999998877 44332110 0111111
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe---EEEecCcEEccCEEEEcCCCCC
Q 035488 252 NVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK---VELVNGQVLEIDSVVLATGYRS 326 (408)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~---v~~~~g~~~~~D~vi~atG~~~ 326 (408)
.+.+++.+|+++.+ +.++++++ ....++.++++|.+|+|+|+.|
T Consensus 198 -------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 198 -------------------------------EEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKP 246 (444)
T ss_pred -------------------------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCc
Confidence 22334456777765 66775432 2234556799999999999999
Q ss_pred CCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccC-------------ccchhhHHHHHHHHHHH
Q 035488 327 NVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGL-------------SGASLDAMSVALDIAKS 385 (408)
Q Consensus 327 ~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~-------------~~a~~~a~~~a~~i~~~ 385 (408)
+. .++++.++ .+.+|++.+| +..+|+.|||||+|||+..+ ..|..||+.+|.+|.+.
T Consensus 247 ~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 247 NT-EFLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGR 317 (444)
T ss_pred CH-HHHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCC
Confidence 98 67887777 4567889888 45678999999999998531 16789999999999863
No 35
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=7.3e-32 Score=259.63 Aligned_cols=273 Identities=20% Similarity=0.217 Sum_probs=182.7
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCC-----CCCCCCc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPED-----FPRVPHQ 92 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 92 (408)
..++|+||||||||++||..|+++|++|+|+|+.+.+||++.+. ++.+.++.+ ..+++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccCCccHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999888876432 111111111 1123345
Q ss_pred cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC---
Q 035488 93 FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK--- 169 (408)
Q Consensus 93 ~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~--- 169 (408)
+++++++++.|. .. ++..+. ...+.||+||||||+ ..|..+++||.+.. .+++..++.
T Consensus 204 ~gv~i~~~~~v~--------~~--v~~~~~------~~~~~~d~viiAtGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~ 264 (464)
T PRK12831 204 LGVKIETNVVVG--------KT--VTIDEL------LEEEGFDAVFIGSGA-GLPKFMGIPGENLN--GVFSANEFLTRV 264 (464)
T ss_pred cCCEEEcCCEEC--------Cc--CCHHHH------HhccCCCEEEEeCCC-CCCCCCCCCCcCCc--CcEEHHHHHHHH
Confidence 677777776551 11 222221 024579999999995 25777788886531 122222111
Q ss_pred ----------CCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHH
Q 035488 170 ----------SGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVD 239 (408)
Q Consensus 170 ----------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (408)
+.....+++|+|||+|++|+|+|..+.+.|.+|++++|+....+|.... +
T Consensus 265 ~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~-----e--------------- 324 (464)
T PRK12831 265 NLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE-----E--------------- 324 (464)
T ss_pred HhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH-----H---------------
Confidence 1123468999999999999999999999999999999876322221110 0
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C-e---EEE----
Q 035488 240 KILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G-K---VEL---- 307 (408)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~-~---v~~---- 307 (408)
.+.+.+.+|+++.+ +.++.. + . +.+
T Consensus 325 -------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~ 361 (464)
T PRK12831 325 -------------------------------------------VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKME 361 (464)
T ss_pred -------------------------------------------HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEE
Confidence 01112223443332 333321 1 0 111
Q ss_pred --------------ecC--cEEccCEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc
Q 035488 308 --------------VNG--QVLEIDSVVLATGYRSNVPSWLKE-NEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS 369 (408)
Q Consensus 308 --------------~~g--~~~~~D~vi~atG~~~~~~~l~~~-~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~ 369 (408)
.+| ..+++|.||+|+|+.|+. .++.. .++ .+.+|.+.+|..+++|+.|+|||+||+..++.
T Consensus 362 ~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~ 440 (464)
T PRK12831 362 LGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA 440 (464)
T ss_pred ecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch
Confidence 122 268999999999999998 66655 455 46678888885458899999999999987654
Q ss_pred ---cchhhHHHHHHHHHHHhhH
Q 035488 370 ---GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 370 ---~a~~~a~~~a~~i~~~~~~ 388 (408)
.|..+|+.+|.+|...+.+
T Consensus 441 ~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 441 TVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999998865
No 36
>PLN02546 glutathione reductase
Probab=99.97 E-value=8.9e-32 Score=262.38 Aligned_cols=286 Identities=14% Similarity=0.178 Sum_probs=184.0
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecC---------CCCCC--ccCCCCCCCeeeecC---C---c--cccCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA---------NCIAS--LWQNRTYDRLKLHLP---K---Q--FCQLP 78 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~---------~~~gg--~w~~~~~~~~~~~~~---~---~--~~~~~ 78 (408)
..|||+||||||+|+.||..++++|.+|+|||+. ..+|| .+.-+.......... . . .+...
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3589999999999999999999999999999962 34666 222221111110000 0 0 00000
Q ss_pred CC-CCCCCCCCC------------------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEE
Q 035488 79 NF-PFPEDFPRV------------------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVV 139 (408)
Q Consensus 79 ~~-~~~~~~~~~------------------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vVi 139 (408)
.. ....+|... +.+.+++++. .+++.++. . +|++. + ..+.||+|||
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~-G~a~~vd~----~--~V~v~-G-------~~~~~D~LVI 222 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIE-GRGKIVDP----H--TVDVD-G-------KLYTARNILI 222 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE-eEEEEccC----C--EEEEC-C-------EEEECCEEEE
Confidence 00 000011111 1133444433 22322321 2 25442 2 5799999999
Q ss_pred eeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccC
Q 035488 140 ATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLG 219 (408)
Q Consensus 140 AtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~ 219 (408)
||| ++|..|.+||.+. +++..+... ....+++++|||+|.+|+|+|..|...|.+|+++.+.+ .+++..+.
T Consensus 223 ATG--s~p~~P~IpG~~~----v~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~- 293 (558)
T PLN02546 223 AVG--GRPFIPDIPGIEH----AIDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDE- 293 (558)
T ss_pred eCC--CCCCCCCCCChhh----ccCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCH-
Confidence 999 8888899998652 222222221 22357899999999999999999999999999999887 45553332
Q ss_pred CchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--c
Q 035488 220 KSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--I 297 (408)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i 297 (408)
+....+ .+.+++.+|+++.+ +
T Consensus 294 ----~~~~~l-----------------------------------------------------~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 294 ----EVRDFV-----------------------------------------------------AEQMSLRGIEFHTEESP 316 (558)
T ss_pred ----HHHHHH-----------------------------------------------------HHHHHHCCcEEEeCCEE
Confidence 222111 23344567888766 6
Q ss_pred cEEeC---CeE--EEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc-
Q 035488 298 KKFSP---GKV--ELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS- 369 (408)
Q Consensus 298 ~~~~~---~~v--~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~- 369 (408)
.+++. +.+ .+.+++...+|.||+++|++|+...+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+.
T Consensus 317 ~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l 395 (558)
T PLN02546 317 QAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINL 395 (558)
T ss_pred EEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCccc
Confidence 66642 223 23344445589999999999998443 566666 4667999988 567899999999999987654
Q ss_pred --cchhhHHHHHHHHHHH
Q 035488 370 --GASLDAMSVALDIAKS 385 (408)
Q Consensus 370 --~a~~~a~~~a~~i~~~ 385 (408)
.|..||+.+|.+|.+.
T Consensus 396 ~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 396 TPVALMEGGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 6789999999999753
No 37
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=5.4e-31 Score=256.74 Aligned_cols=294 Identities=15% Similarity=0.172 Sum_probs=186.1
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--ccCCCCCCCeeeecCCc--------cccCCCCCCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS--LWQNRTYDRLKLHLPKQ--------FCQLPNFPFPEDFP 87 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg--~w~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 87 (408)
..|||+||||||+|++||..+++.|.+|+|||++ .+|| .+..+............ .+.+... ...++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~-~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQ-FSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCcc-CccCHH
Confidence 3689999999999999999999999999999986 6787 33322222211111100 0011000 001111
Q ss_pred ------------------CCCCccCccccccce-eEE---EE--------E---cCCCCcEEEEEe---ecCCCCcceEE
Q 035488 88 ------------------RVPHQFDINPRFNET-VQS---AK--------Y---DETFGFWRIKTI---SSSDSSFCEVE 131 (408)
Q Consensus 88 ------------------~~~~~~~~~~~~~~~-V~~---i~--------~---~~~~~~~~V~~~---~~~~~~~~~~~ 131 (408)
..+++.++++..+.- +.+ +. . ..+.+..+|+.. ...+ . .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g---~~ 200 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDD-G---QV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCC-C---cE
Confidence 111134555544331 111 00 0 000011122110 0001 1 47
Q ss_pred EEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCce
Q 035488 132 YICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVH 211 (408)
Q Consensus 132 i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~ 211 (408)
++||+|||||| +.|..|.+||.+ .++++.++.... .+++++|||+|.+|+|+|..+...|.+|+++.+++ +
T Consensus 201 i~ad~lVIATG--S~P~~P~IpG~~----~v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~ 271 (561)
T PTZ00058 201 IEGKNILIAVG--NKPIFPDVKGKE----FTISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN-R 271 (561)
T ss_pred EECCEEEEecC--CCCCCCCCCCce----eEEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-c
Confidence 99999999999 788889998864 233333333222 27999999999999999999999999999999988 5
Q ss_pred eecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCe
Q 035488 212 VLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDI 291 (408)
Q Consensus 212 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 291 (408)
++|..+. ++...+ .+.+++.+|
T Consensus 272 il~~~d~-----~i~~~l-----------------------------------------------------~~~L~~~GV 293 (561)
T PTZ00058 272 LLRKFDE-----TIINEL-----------------------------------------------------ENDMKKNNI 293 (561)
T ss_pred ccccCCH-----HHHHHH-----------------------------------------------------HHHHHHCCC
Confidence 6564433 222222 233445577
Q ss_pred EEecC--ccEEeCC---eE--EEec-CcEEccCEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEe
Q 035488 292 KVVPG--IKKFSPG---KV--ELVN-GQVLEIDSVVLATGYRSNVPSW-LKENEFFSENGIPKNPFPNGWKGKTGLYAVG 362 (408)
Q Consensus 292 ~~~~~--i~~~~~~---~v--~~~~-g~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~g~~~~~~~~~~t~~~~iya~G 362 (408)
+++.+ +.++++. ++ .+.+ ++++++|.|++|+|++|++..+ ++..++.+.+|++.+| +.++|+.|+|||+|
T Consensus 294 ~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VD-e~lqTs~p~IYA~G 372 (561)
T PTZ00058 294 NIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHIYAVG 372 (561)
T ss_pred EEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEEC-cCCccCCCCEEEeE
Confidence 77766 6667642 22 3334 3579999999999999998433 2333455668999988 56789999999999
Q ss_pred eccc----------------------------------cCc---cchhhHHHHHHHHHHH
Q 035488 363 FTKR----------------------------------GLS---GASLDAMSVALDIAKS 385 (408)
Q Consensus 363 d~~~----------------------------------~~~---~a~~~a~~~a~~i~~~ 385 (408)
||+. .+. .|..||+.+|.+|.+.
T Consensus 373 Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 373 DCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred eccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 9987 222 6789999999999764
No 38
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=7.3e-31 Score=254.59 Aligned_cols=294 Identities=17% Similarity=0.210 Sum_probs=185.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCeeeecCCc----------cccCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRLKLHLPKQ----------FCQLPNFPFPEDFP 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 87 (408)
.+||+||||||+|++||..|+++|.+|+|||++ .+||+.. ....+.-.+..... .+.... ....++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~-~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG-EVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc-CcccCHH
Confidence 479999999999999999999999999999985 6777432 22222111000000 001100 0000110
Q ss_pred CCCC---------ccCccccc-cceeEEEEEc---CCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCC
Q 035488 88 RVPH---------QFDINPRF-NETVQSAKYD---ETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEG 154 (408)
Q Consensus 88 ~~~~---------~~~~~~~~-~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g 154 (408)
.... ..++...+ ...|+.++.. .+.+.+.|...+ +.. .+++||+|||||| +.|..| ||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~--g~~---~~~~~d~lViATG--s~p~~~--pg 152 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLND--GGT---ETVTFDNAIIATG--SSTRLL--PG 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecC--CCe---eEEEcCEEEEeCC--CCCCCC--CC
Confidence 0000 00111111 1244444421 111343343322 222 5799999999999 566543 55
Q ss_pred CCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcc
Q 035488 155 LQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFP 234 (408)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~ 234 (408)
.+. .+.+++..+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ +++|..+. +....+
T Consensus 153 ~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~-----~~~~~l----- 219 (466)
T PRK07818 153 TSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA-----EVSKEI----- 219 (466)
T ss_pred CCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----HHHHHH-----
Confidence 331 123333332221 12357899999999999999999999999999999988 56665433 222222
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe----EEEe
Q 035488 235 LWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK----VELV 308 (408)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~~ 308 (408)
.+.+++.+|+++.+ ++++++++ +.+.
T Consensus 220 ------------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 251 (466)
T PRK07818 220 ------------------------------------------------AKQYKKLGVKILTGTKVESIDDNGSKVTVTVS 251 (466)
T ss_pred ------------------------------------------------HHHHHHCCCEEEECCEEEEEEEeCCeEEEEEE
Confidence 23344567888876 77775432 3343
Q ss_pred --cC--cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHH
Q 035488 309 --NG--QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVA 379 (408)
Q Consensus 309 --~g--~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a 379 (408)
+| +++++|.||+|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..||+.+|
T Consensus 252 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa 330 (466)
T PRK07818 252 KKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAA 330 (466)
T ss_pred ecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHH
Confidence 56 479999999999999998443 566666 4677888888 567899999999999987543 7889999999
Q ss_pred HHHHHH
Q 035488 380 LDIAKS 385 (408)
Q Consensus 380 ~~i~~~ 385 (408)
.+|.+.
T Consensus 331 ~~i~g~ 336 (466)
T PRK07818 331 ETIAGA 336 (466)
T ss_pred HHHcCC
Confidence 999753
No 39
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=1.6e-30 Score=251.71 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=191.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-CCCCCCe-eeecC------Cc--cccCCCC---CCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-NRTYDRL-KLHLP------KQ--FCQLPNF---PFPED 85 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-~~~~~~~-~~~~~------~~--~~~~~~~---~~~~~ 85 (408)
|++|+||||||+|+.+|..++++|.+|+|||++. +||+.. ....+.- .+... .. -+..... ....+
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 4689999999999999999999999999999874 777432 1112111 11000 00 0000000 00001
Q ss_pred C------------------CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 86 F------------------PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 86 ~------------------~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+ .+.+.+.+++++.+ ++..++...+.+.+.|+..++ .. .++.||+||+||| +.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g--~~---~~~~~d~lViATG--s~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADG--GE---ETLDADVVLIATG--ASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCC--ce---EEEecCEEEEcCC--CCC
Confidence 1 11122446666553 344433111114444544332 11 4799999999999 666
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
..|+.++... ..+++..+..+.. ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. +...
T Consensus 152 ~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~ 222 (466)
T PRK07845 152 RILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA-----DAAE 222 (466)
T ss_pred CCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH-----HHHH
Confidence 6555443221 2344444443322 356899999999999999999999999999999988 56665433 2222
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CC
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PG 303 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~ 303 (408)
.+ .+.+++.+|+++.+ +.+++ ++
T Consensus 223 ~l-----------------------------------------------------~~~L~~~gV~i~~~~~v~~v~~~~~ 249 (466)
T PRK07845 223 VL-----------------------------------------------------EEVFARRGMTVLKRSRAESVERTGD 249 (466)
T ss_pred HH-----------------------------------------------------HHHHHHCCcEEEcCCEEEEEEEeCC
Confidence 21 23344567888766 66774 23
Q ss_pred e--EEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHH
Q 035488 304 K--VELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAM 376 (408)
Q Consensus 304 ~--v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~ 376 (408)
+ +.+.+|+++++|.|++++|++|+...+ +++.++ .+.+|++.+| +.++|+.|+|||+||++..+. .|..||+
T Consensus 250 ~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~ 328 (466)
T PRK07845 250 GVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGR 328 (466)
T ss_pred EEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHH
Confidence 3 455688899999999999999998433 566666 4678999888 567899999999999987643 7889999
Q ss_pred HHHHHHHHH
Q 035488 377 SVALDIAKS 385 (408)
Q Consensus 377 ~~a~~i~~~ 385 (408)
.++.+|.+.
T Consensus 329 ~aa~~i~g~ 337 (466)
T PRK07845 329 IAMYHALGE 337 (466)
T ss_pred HHHHHHcCC
Confidence 999999753
No 40
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.5e-31 Score=255.17 Aligned_cols=287 Identities=21% Similarity=0.251 Sum_probs=180.0
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeee-e------cCCcc--ccCCCCCCCCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKL-H------LPKQF--CQLPNFPFPEDF 86 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~-~------~~~~~--~~~~~~~~~~~~ 86 (408)
|..+||+||||||+|++||..|++.|.+|+|||+ +.+||+|.. ...+...+ . ..... +.........++
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF 79 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 3458999999999999999999999999999999 678998742 21111100 0 00000 000000000011
Q ss_pred CCCCC-------------------ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 87 PRVPH-------------------QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 87 ~~~~~-------------------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
.+..+ ..++++.. .++..+ +.+++.+ ++ .++.||+||+|||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~------~~~~v~v-~~-------~~~~~d~lIiATGs~--- 141 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIK-GTARFV------DPNTVEV-NG-------ERIEAKNIVIATGSR--- 141 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEE-EEEEEc------cCCEEEE-Cc-------EEEEeCEEEEeCCCC---
Confidence 11000 01111111 111111 1123444 21 589999999999954
Q ss_pred CCCCCCCCCCcc-eeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHH
Q 035488 148 IEPEFEGLQHFE-GNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLA 226 (408)
Q Consensus 148 ~~p~~~g~~~~~-~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~ 226 (408)
.|.+||..... ..+++..+.. .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+. ++.
T Consensus 142 -~p~ipg~~~~~~~~~~~~~~~~-~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~ 213 (460)
T PRK06292 142 -VPPIPGVWLILGDRLLTSDDAF-ELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDP-----EVS 213 (460)
T ss_pred -CCCCCCCcccCCCcEECchHHh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhH-----HHH
Confidence 44556553211 1233332222 223467999999999999999999999999999999988 55553322 222
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC-
Q 035488 227 VLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG- 303 (408)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~- 303 (408)
..+ .+.+++. |+++.+ +.+++..
T Consensus 214 ~~~-----------------------------------------------------~~~l~~~-I~i~~~~~v~~i~~~~ 239 (460)
T PRK06292 214 KQA-----------------------------------------------------QKILSKE-FKIKLGAKVTSVEKSG 239 (460)
T ss_pred HHH-----------------------------------------------------HHHHhhc-cEEEcCCEEEEEEEcC
Confidence 211 2223444 666665 6666532
Q ss_pred --eEEE--ecC--cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cch
Q 035488 304 --KVEL--VNG--QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GAS 372 (408)
Q Consensus 304 --~v~~--~~g--~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~ 372 (408)
.+.+ .++ +++++|.|++++|++|+...+ ++..++ .+.+|++.+| +..+|+.|+|||+|||+..+. .|.
T Consensus 240 ~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~ 318 (460)
T PRK06292 240 DEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAA 318 (460)
T ss_pred CceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHH
Confidence 3443 233 579999999999999999443 455566 5668988888 567899999999999987643 789
Q ss_pred hhHHHHHHHHHHH
Q 035488 373 LDAMSVALDIAKS 385 (408)
Q Consensus 373 ~~a~~~a~~i~~~ 385 (408)
.||+.+|.+|.+.
T Consensus 319 ~qg~~aa~~i~~~ 331 (460)
T PRK06292 319 DEGRIAAENAAGD 331 (460)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999764
No 41
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.1e-30 Score=251.82 Aligned_cols=294 Identities=21% Similarity=0.218 Sum_probs=187.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeeecC-C--------ccccCCCCCCCCCCC-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLHLP-K--------QFCQLPNFPFPEDFP- 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~- 87 (408)
.|||+||||||+|++||..|+++|.+|+|||+. .+||++.. ...+.-.+... . ..+.........++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 579999999999999999999999999999996 78997632 22222110000 0 000111000011111
Q ss_pred -----------------CCCCccCccccccceeEEEEEc---CCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 88 -----------------RVPHQFDINPRFNETVQSAKYD---ETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 88 -----------------~~~~~~~~~~~~~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
...++.++++.. .++..++.+ ...+.+.|.+.++ .. .++.||+|||||| +.|
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~-g~a~~i~~~~~~~~~~~~~v~~~~g--~~---~~~~~d~lViATG--s~p 154 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFH-GIGRILGPSIFSPMPGTVSVETETG--EN---EMIIPENLLIATG--SRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEE-EEEEEeCCCCCcCCceEEEEEeCCC--ce---EEEEcCEEEEeCC--CCC
Confidence 111133555555 345555433 1113555655432 11 5799999999999 566
Q ss_pred CCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHH
Q 035488 148 IEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAV 227 (408)
Q Consensus 148 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~ 227 (408)
..+ |+.+.....+++..+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+. ++..
T Consensus 155 ~~~--p~~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~-----~~~~ 225 (472)
T PRK05976 155 VEL--PGLPFDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA-----ELSK 225 (472)
T ss_pred CCC--CCCCCCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH-----HHHH
Confidence 433 2222111123333333222 2347899999999999999999999999999999988 56554432 2222
Q ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe---C
Q 035488 228 LMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS---P 302 (408)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~---~ 302 (408)
.+ .+.+++.+|+++.+ +.+++ .
T Consensus 226 ~l-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~~~~ 252 (472)
T PRK05976 226 EV-----------------------------------------------------ARLLKKLGVRVVTGAKVLGLTLKKD 252 (472)
T ss_pred HH-----------------------------------------------------HHHHHhcCCEEEeCcEEEEEEEecC
Confidence 22 22344557788776 67775 3
Q ss_pred CeE---EEecC--cEEccCEEEEcCCCCCCCCCc-ccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchh
Q 035488 303 GKV---ELVNG--QVLEIDSVVLATGYRSNVPSW-LKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASL 373 (408)
Q Consensus 303 ~~v---~~~~g--~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~ 373 (408)
+++ .+.+| +++++|.||+|+|.+|+...+ ++..++...+|++.+| +..+|+.|+|||+||+...+. .|..
T Consensus 253 ~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~ 331 (472)
T PRK05976 253 GGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMA 331 (472)
T ss_pred CCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHH
Confidence 332 23456 368999999999999998444 3444554457888888 467789999999999986543 6889
Q ss_pred hHHHHHHHHHH
Q 035488 374 DAMSVALDIAK 384 (408)
Q Consensus 374 ~a~~~a~~i~~ 384 (408)
+|+.+|.+|.+
T Consensus 332 ~g~~aa~~i~g 342 (472)
T PRK05976 332 EGEMAAEHIAG 342 (472)
T ss_pred HHHHHHHHHcC
Confidence 99999999865
No 42
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=9e-31 Score=251.90 Aligned_cols=283 Identities=15% Similarity=0.133 Sum_probs=181.3
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--ccCCCCCCCeeeecC------Cc--cccCCCCCCCCCCC--
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS--LWQNRTYDRLKLHLP------KQ--FCQLPNFPFPEDFP-- 87 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg--~w~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~-- 87 (408)
|||+||||||+|.+||.. ..|.+|+|||++ .+|| ++.-+.......... +. .+.........++.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 799999999999999876 469999999985 5777 333222111110000 00 00000000000110
Q ss_pred -----------------CC-CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 88 -----------------RV-PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 88 -----------------~~-~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.. +++.++++..+. ..-+ +. + +|++.++ .+++||+|||||| ++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~--~--~V~v~~g-------~~~~~d~lViATG--s~p~~ 142 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GP--K--TLRTGDG-------EEITADQVVIAAG--SRPVI 142 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cC--C--EEEECCC-------CEEEeCEEEEcCC--CCCCC
Confidence 11 222344443322 1112 11 2 2666543 4799999999999 78888
Q ss_pred CCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHH
Q 035488 150 PEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLM 229 (408)
Q Consensus 150 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 229 (408)
|++||.... .+.+..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .+++..+. ++...+
T Consensus 143 p~i~g~~~~--~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~~l 213 (451)
T PRK07846 143 PPVIADSGV--RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD-----DISERF 213 (451)
T ss_pred CCCCCcCCc--cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-----HHHHHH
Confidence 998885431 1222222222 22357899999999999999999999999999999988 45443332 221111
Q ss_pred HhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--e-
Q 035488 230 MKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--K- 304 (408)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~- 304 (408)
. + +.+.+++++.+ +.+++.+ .
T Consensus 214 ~-----------------------------------------------------~-l~~~~v~i~~~~~v~~i~~~~~~v 239 (451)
T PRK07846 214 T-----------------------------------------------------E-LASKRWDVRLGRNVVGVSQDGSGV 239 (451)
T ss_pred H-----------------------------------------------------H-HHhcCeEEEeCCEEEEEEEcCCEE
Confidence 1 1 11234666655 6666532 2
Q ss_pred -EEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 305 -VELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 305 -v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
+.+.+++++++|.|++|+|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+||++..+. .|..||+.+
T Consensus 240 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~ 318 (451)
T PRK07846 240 TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEARVV 318 (451)
T ss_pred EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHHHHH
Confidence 455678899999999999999998333 345566 5678999988 567799999999999997644 678999999
Q ss_pred HHHHHHH
Q 035488 379 ALDIAKS 385 (408)
Q Consensus 379 a~~i~~~ 385 (408)
+.+|.+.
T Consensus 319 a~ni~~~ 325 (451)
T PRK07846 319 QHNLLHP 325 (451)
T ss_pred HHHHcCC
Confidence 9999754
No 43
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=2.7e-31 Score=255.36 Aligned_cols=272 Identities=21% Similarity=0.224 Sum_probs=179.7
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||++.... +... .+..+. ....+.+.+.++++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gi-p~~~--~~~~~~--------~~~~~~l~~~gv~~ 200 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGI-PEFR--LPKEIV--------VTEIKTLKKLGVTF 200 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecC-CCcc--CCHHHH--------HHHHHHHHhCCcEE
Confidence 357899999999999999999999999999999998888664321 1100 000000 00011223456666
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC--------
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK-------- 169 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~-------- 169 (408)
+.++.+ . .. |++.+ ....||+||+|||+ ..|..|.+||.+.. .+++..++.
T Consensus 201 ~~~~~v------~--~~--v~~~~--------~~~~yd~viiAtGa-~~p~~~~ipG~~~~--gv~~~~~~l~~~~~~~~ 259 (449)
T TIGR01316 201 RMNFLV------G--KT--ATLEE--------LFSQYDAVFIGTGA-GLPKLMNIPGEELC--GVYSANDFLTRANLMKA 259 (449)
T ss_pred EeCCcc------C--Cc--CCHHH--------HHhhCCEEEEeCCC-CCCCcCCCCCCCCC--CcEEHHHHHHHHhhccc
Confidence 665533 1 11 33332 13469999999995 26777888886521 122222111
Q ss_pred ------CCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHH
Q 035488 170 ------SGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILL 243 (408)
Q Consensus 170 ------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (408)
......+++|+|||+|.+|+|+|..+.+.|.+|++++|++...++...
T Consensus 260 ~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~-------------------------- 313 (449)
T TIGR01316 260 YEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARV-------------------------- 313 (449)
T ss_pred ccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH--------------------------
Confidence 111246799999999999999999999999999999988621111000
Q ss_pred HHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC---C---eEEEe-------
Q 035488 244 ILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP---G---KVELV------- 308 (408)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~---~---~v~~~------- 308 (408)
...+.+++.+|+++.+ +.++.+ + .|.+.
T Consensus 314 -------------------------------------~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 356 (449)
T TIGR01316 314 -------------------------------------EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ 356 (449)
T ss_pred -------------------------------------HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCc
Confidence 0112233445555543 444432 1 12221
Q ss_pred --cC-----------cEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cc
Q 035488 309 --NG-----------QVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GA 371 (408)
Q Consensus 309 --~g-----------~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a 371 (408)
+| +.+++|.||+|+|+.|+. .+++..++ .+.+|.+.+| +..+|+.|+|||+||+..++. .|
T Consensus 357 ~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~~~v~~A 434 (449)
T TIGR01316 357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGVFAGGDIILGAATVIRA 434 (449)
T ss_pred CCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCEEEecCCCCCcHHHHHH
Confidence 12 368999999999999998 67777666 4667888888 467899999999999987654 78
Q ss_pred hhhHHHHHHHHHHHh
Q 035488 372 SLDAMSVALDIAKSW 386 (408)
Q Consensus 372 ~~~a~~~a~~i~~~~ 386 (408)
+.+|+.+|.+|..+|
T Consensus 435 i~~G~~AA~~I~~~L 449 (449)
T TIGR01316 435 MGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998764
No 44
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.4e-30 Score=251.14 Aligned_cols=294 Identities=19% Similarity=0.226 Sum_probs=186.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEec------CCCCCCccCC-CCCCCee-eecCC---------ccccCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILER------ANCIASLWQN-RTYDRLK-LHLPK---------QFCQLPNFP 81 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~------~~~~gg~w~~-~~~~~~~-~~~~~---------~~~~~~~~~ 81 (408)
.+||+||||||+|++||..+++.|.+|+|||+ ...+||+|.. ...+... ..... ..+......
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 47999999999999999999999999999998 3567887642 1122110 00000 000111000
Q ss_pred CCCCCCCCCC------------------ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 82 FPEDFPRVPH------------------QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 82 ~~~~~~~~~~------------------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
.+.++..+.+ ..++++.. .++..++... ..|+|.+..+++ .+++||+||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~~~~~~~~--~~~~v~v~~~~~-----~~~~~d~lViATG- 154 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLK-GRGSFVGKTD--AGYEIKVTGEDE-----TVITAKHVIIATG- 154 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-EEEEEecCCC--CCCEEEEecCCC-----eEEEeCEEEEeCC-
Confidence 1111111111 22333333 3344444333 356677653211 4799999999999
Q ss_pred CCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchH
Q 035488 144 NAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTF 223 (408)
Q Consensus 144 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~ 223 (408)
+.|..++ +.. +.+..++.++........+++++|||+|.+|+|+|..+.+.|.+|+++.+++ .++|..+.
T Consensus 155 -s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~----- 224 (475)
T PRK06327 155 -SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE----- 224 (475)
T ss_pred -CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH-----
Confidence 5654332 221 1122223332222223357899999999999999999999999999999988 45453322
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe
Q 035488 224 QLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS 301 (408)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~ 301 (408)
++...+ .+.+++.+|+++.+ +.+++
T Consensus 225 ~~~~~~-----------------------------------------------------~~~l~~~gi~i~~~~~v~~i~ 251 (475)
T PRK06327 225 QVAKEA-----------------------------------------------------AKAFTKQGLDIHLGVKIGEIK 251 (475)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHcCcEEEeCcEEEEEE
Confidence 222221 22334457787766 67775
Q ss_pred CC--e--EEEec--C--cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc--
Q 035488 302 PG--K--VELVN--G--QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS-- 369 (408)
Q Consensus 302 ~~--~--v~~~~--g--~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~-- 369 (408)
.+ . +.+.+ | +.+++|.|++++|++|++..+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+.
T Consensus 252 ~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~~~ 330 (475)
T PRK06327 252 TGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPMLA 330 (475)
T ss_pred EcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcchH
Confidence 43 2 34444 3 479999999999999998443 344555 5678889888 467899999999999987544
Q ss_pred -cchhhHHHHHHHHHHH
Q 035488 370 -GASLDAMSVALDIAKS 385 (408)
Q Consensus 370 -~a~~~a~~~a~~i~~~ 385 (408)
.|..||+.+|.+|.+.
T Consensus 331 ~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 331 HKAEEEGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 6889999999999753
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=3e-30 Score=250.71 Aligned_cols=289 Identities=16% Similarity=0.223 Sum_probs=185.1
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC-CCCCCeeeecCCcc---------ccCCCCCCCCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN-RTYDRLKLHLPKQF---------CQLPNFPFPEDFPRV 89 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 89 (408)
|||+||||||+|++||..|++.|.+|+|||+ +.+||+|.. ..++...+...... +.+.......++...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999999 789997642 22222111000000 000000000011100
Q ss_pred ------------------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC
Q 035488 90 ------------------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE 151 (408)
Q Consensus 90 ------------------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~ 151 (408)
+.+.++++..+ ++..++ . +.+.|...++ . .+++||+||+||| +.|..|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g---~---~~~~~d~lVlAtG--~~p~~~~ 147 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLD--P--GTVLVTGENG---E---ETLTAKNIIIATG--SRPRSLP 147 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--C--CEEEEecCCC---c---EEEEeCEEEEcCC--CCCCCCC
Confidence 01223333332 222221 1 3443443321 1 4799999999999 6777776
Q ss_pred CC-CCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHH
Q 035488 152 FE-GLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMM 230 (408)
Q Consensus 152 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 230 (408)
+| +.. +..++.++........+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|..+. ++...+
T Consensus 148 ~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~~- 217 (461)
T TIGR01350 148 GPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA-----EVSKVV- 217 (461)
T ss_pred CCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH-----HHHHHH-
Confidence 65 322 11223222222222357899999999999999999999999999999988 45553322 222111
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCeE-
Q 035488 231 KYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGKV- 305 (408)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~v- 305 (408)
.+.+++.+|+++.+ +.+++ ++.+
T Consensus 218 ----------------------------------------------------~~~l~~~gi~i~~~~~v~~i~~~~~~v~ 245 (461)
T TIGR01350 218 ----------------------------------------------------AKALKKKGVKILTNTKVTAVEKNDDQVV 245 (461)
T ss_pred ----------------------------------------------------HHHHHHcCCEEEeCCEEEEEEEeCCEEE
Confidence 23344557777766 66665 3333
Q ss_pred -EEecC--cEEccCEEEEcCCCCCCCCC-ccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHH
Q 035488 306 -ELVNG--QVLEIDSVVLATGYRSNVPS-WLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMS 377 (408)
Q Consensus 306 -~~~~g--~~~~~D~vi~atG~~~~~~~-l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~ 377 (408)
.+.+| +++++|.+|+|+|..|+... +++..++ .+.+|++.+| +..+|+.|+||++|||+..+. .|..||+.
T Consensus 246 v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~ 324 (461)
T TIGR01350 246 YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIV 324 (461)
T ss_pred EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 34456 47999999999999999843 4566666 5677889888 567889999999999986543 68899999
Q ss_pred HHHHHHHH
Q 035488 378 VALDIAKS 385 (408)
Q Consensus 378 ~a~~i~~~ 385 (408)
+|.+|.+.
T Consensus 325 aa~~i~~~ 332 (461)
T TIGR01350 325 AAENIAGK 332 (461)
T ss_pred HHHHHcCC
Confidence 99999764
No 46
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=5e-30 Score=248.19 Aligned_cols=289 Identities=18% Similarity=0.168 Sum_probs=183.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC--------CCCCcc-CCCCCCCeeeecC---------CccccCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN--------CIASLW-QNRTYDRLKLHLP---------KQFCQLPNF 80 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~--------~~gg~w-~~~~~~~~~~~~~---------~~~~~~~~~ 80 (408)
.+||+||||||+|+.+|..+++.|.+|++||+.. .+||++ +....+.-.+... ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3799999999999999999999999999999741 477854 2233332211100 000111100
Q ss_pred C-CCCCCCC------------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEee
Q 035488 81 P-FPEDFPR------------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVAT 141 (408)
Q Consensus 81 ~-~~~~~~~------------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAt 141 (408)
. ...++.. .++..++++..+ +..-++ . +. |.+...++.. ..++||+|||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~--~--~~--v~v~~~~g~~---~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVD--K--HR--IKATNKKGKE---KIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcC--C--CE--EEEeccCCCc---eEEEeCEEEEec
Confidence 0 0011110 111223333221 111111 1 23 4444322222 579999999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCc
Q 035488 142 GENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKS 221 (408)
Q Consensus 142 G~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~ 221 (408)
| +.|..|++||.... .++..+.... ...+++++|||+|.+|+|+|..|++.|.+|+++.+. .++|..+.
T Consensus 152 G--s~p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~--- 220 (484)
T TIGR01438 152 G--ERPRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ--- 220 (484)
T ss_pred C--CCCCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccccccCH---
Confidence 9 78888999987532 2232222222 235678999999999999999999999999999873 45454433
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccE
Q 035488 222 TFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKK 299 (408)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~ 299 (408)
++...+ .+.+++.+|+++.+ +.+
T Consensus 221 --~~~~~l-----------------------------------------------------~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 221 --DCANKV-----------------------------------------------------GEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred --HHHHHH-----------------------------------------------------HHHHHHcCCEEEeCceEEE
Confidence 222222 23344557777766 455
Q ss_pred EeC--Ce--EEEecC---cEEccCEEEEcCCCCCCCCCc-ccccccc-cC-CCCCCCCCCCCCCCCCceEEEeeccc-cC
Q 035488 300 FSP--GK--VELVNG---QVLEIDSVVLATGYRSNVPSW-LKENEFF-SE-NGIPKNPFPNGWKGKTGLYAVGFTKR-GL 368 (408)
Q Consensus 300 ~~~--~~--v~~~~g---~~~~~D~vi~atG~~~~~~~l-~~~~~~~-~~-~g~~~~~~~~~~t~~~~iya~Gd~~~-~~ 368 (408)
++. +. +.+.++ +++++|.|++|+|+.||+..+ ++..++. +. +|.+.+| +.++|+.|+|||+|||+. ..
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~ 324 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQ 324 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCc
Confidence 542 22 455555 379999999999999999433 4555663 33 4888888 567899999999999985 22
Q ss_pred c---cchhhHHHHHHHHHH
Q 035488 369 S---GASLDAMSVALDIAK 384 (408)
Q Consensus 369 ~---~a~~~a~~~a~~i~~ 384 (408)
. .|..||+.+|.+|.+
T Consensus 325 ~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 325 ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cchHHHHHHHHHHHHHHhc
Confidence 2 678999999999975
No 47
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.97 E-value=1.7e-30 Score=252.59 Aligned_cols=291 Identities=16% Similarity=0.196 Sum_probs=180.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC--------CCCCc-cCCCCCCCeeeecC----------CccccCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN--------CIASL-WQNRTYDRLKLHLP----------KQFCQLPN 79 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~--------~~gg~-w~~~~~~~~~~~~~----------~~~~~~~~ 79 (408)
+|||+||||||+|++||..|+++|.+|+|||+.. .+||+ .+...++...+... ...+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5799999999999999999999999999999732 37774 22222332111000 00011110
Q ss_pred CCCCCCCCCCCC-------ccCccccccceeEEEE------EcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCC
Q 035488 80 FPFPEDFPRVPH-------QFDINPRFNETVQSAK------YDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAE 146 (408)
Q Consensus 80 ~~~~~~~~~~~~-------~~~~~~~~~~~V~~i~------~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~ 146 (408)
.. ..++.+..+ +++..+....++.+|+ ... +.++|++.+. +.. ..++||+|||||| +.
T Consensus 85 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~-~~~---~~i~~d~lIIATG--s~ 155 (499)
T PTZ00052 85 SS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK--DEHTVSYGDN-SQE---ETITAKYILIATG--GR 155 (499)
T ss_pred CC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc--cCCEEEEeeC-CCc---eEEECCEEEEecC--CC
Confidence 00 111111111 2222222222221111 111 2233555432 111 5799999999999 77
Q ss_pred CCCCC-CCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHH
Q 035488 147 KIEPE-FEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQL 225 (408)
Q Consensus 147 ~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~ 225 (408)
|..|. +||.... .+...+.... ...+++++|||+|.+|+|+|..|+..|.+|+++.++ .+++..+. +.
T Consensus 156 p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~-----~~ 224 (499)
T PTZ00052 156 PSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDR-----QC 224 (499)
T ss_pred CCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCH-----HH
Confidence 77774 8876532 2232222221 224679999999999999999999999999999874 23343332 22
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC-
Q 035488 226 AVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP- 302 (408)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~- 302 (408)
...+ .+.+++.+|+++.+ +.+++.
T Consensus 225 ~~~l-----------------------------------------------------~~~l~~~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 225 SEKV-----------------------------------------------------VEYMKEQGTLFLEGVVPINIEKM 251 (499)
T ss_pred HHHH-----------------------------------------------------HHHHHHcCCEEEcCCeEEEEEEc
Confidence 2221 23344556777766 455543
Q ss_pred -C--eEEEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeecccc-Cc---cchh
Q 035488 303 -G--KVELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRG-LS---GASL 373 (408)
Q Consensus 303 -~--~v~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~-~~---~a~~ 373 (408)
+ .+.+.+|+++++|.||+++|++||+..+ ++..++ .+.+|++++++. +|+.|+|||+|||+.+ +. .|..
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~ 329 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIK 329 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHH
Confidence 2 2556688889999999999999998333 345566 566787655533 8999999999998853 32 6789
Q ss_pred hHHHHHHHHHH
Q 035488 374 DAMSVALDIAK 384 (408)
Q Consensus 374 ~a~~~a~~i~~ 384 (408)
||+.+|.+|.+
T Consensus 330 ~g~~aa~ni~g 340 (499)
T PTZ00052 330 AGILLARRLFK 340 (499)
T ss_pred HHHHHHHHHhC
Confidence 99999999975
No 48
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.1e-30 Score=265.84 Aligned_cols=279 Identities=18% Similarity=0.152 Sum_probs=194.7
Q ss_pred cEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCCccCCCCCCCeeeec-CCccccCCCCCCCCCCCCCCCccCccc
Q 035488 22 PVIVGAGPSGLAVAAGLKNQG---VPFIILERANCIASLWQNRTYDRLKLHL-PKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~g---~~v~lie~~~~~gg~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
|||||||+||+++|..|++++ ++|+|||+.+.++ |....+.. .......... .....+++++.++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~~~l~g~~~~~~l--~~~~~~~~~~~gv~~ 71 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLSSVLQGEADLDDI--TLNSKDWYEKHGITL 71 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccccHHHCCCCCHHHc--cCCCHHHHHHCCCEE
Confidence 699999999999999998864 6999999998764 33322110 0000000011 111223445678999
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC-----C
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG-----A 172 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~-----~ 172 (408)
+.+++|+.++... +. |++.++ .++.||+||+||| +.|+.|++||.+... ++......+. .
T Consensus 72 ~~g~~V~~Id~~~--k~--V~~~~g-------~~~~yD~LVlATG--s~p~~p~ipG~~~~~--v~~~rt~~d~~~i~~~ 136 (785)
T TIGR02374 72 YTGETVIQIDTDQ--KQ--VITDAG-------RTLSYDKLILATG--SYPFILPIPGADKKG--VYVFRTIEDLDAIMAM 136 (785)
T ss_pred EcCCeEEEEECCC--CE--EEECCC-------cEeeCCEEEECCC--CCcCCCCCCCCCCCC--EEEeCCHHHHHHHHHH
Confidence 9999999998765 33 777654 5899999999999 788889999876421 2222211111 1
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhh
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGN 252 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 252 (408)
...+++++|||+|.+|+|+|..|.+.|.+|+++++.+ ++++.... ......
T Consensus 137 ~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld----~~~~~~------------------------ 187 (785)
T TIGR02374 137 AQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLD----QTAGRL------------------------ 187 (785)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcC----HHHHHH------------------------
Confidence 1257899999999999999999999999999999887 44332211 011111
Q ss_pred hhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC----eEEEecCcEEccCEEEEcCCCCC
Q 035488 253 VEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG----KVELVNGQVLEIDSVVLATGYRS 326 (408)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~~g~~~~~D~vi~atG~~~ 326 (408)
..+.+++.+|+++.+ +.++.++ .+.+.+|+++++|+||+++|++|
T Consensus 188 -----------------------------l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 188 -----------------------------LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred -----------------------------HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 123345567788776 6677543 37788999999999999999999
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC-------ccchhhHHHHHHHHHHH
Q 035488 327 NVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL-------SGASLDAMSVALDIAKS 385 (408)
Q Consensus 327 ~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~-------~~a~~~a~~~a~~i~~~ 385 (408)
+. .+++..++..+ |.+++| +.++|+.|+|||+|||+... ..|..||+.+|.+|.+.
T Consensus 239 n~-~la~~~gl~~~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 239 ND-ELAVSAGIKVN-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred Cc-HHHHhcCCccC-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 98 67777766444 556666 46789999999999997532 14678999999999764
No 49
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=1.1e-30 Score=246.12 Aligned_cols=287 Identities=19% Similarity=0.227 Sum_probs=191.1
Q ss_pred CcEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQ---GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~---g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
+|||||||+||+.+|..|+++ +.+|+|||+++.+. |.+......... .+.......+.++..++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~gv~~ 71 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMIAGH--YSLDEIRIDLRRLARQAGARF 71 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHHhee--CCHHHhcccHHHHHHhcCCEE
Confidence 589999999999999999754 58999999987532 222111000000 000000011122333557777
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeecc---C----CCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAG---D----YKS 170 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~---~----~~~ 170 (408)
.. .+|++++... +. |++.++ .+++||+|||||| +.+..|.+||..+......... . +..
T Consensus 72 ~~-~~v~~id~~~--~~--V~~~~g-------~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 137 (364)
T TIGR03169 72 VI-AEATGIDPDR--RK--VLLANR-------PPLSYDVLSLDVG--STTPLSGVEGAADLAVPVKPIENFLARWEALLE 137 (364)
T ss_pred EE-EEEEEEeccc--CE--EEECCC-------CcccccEEEEccC--CCCCCCCCCcccccccccCCHHHHHHHHHHHHH
Confidence 65 5899998766 43 777664 5799999999999 7888888888543110000000 0 000
Q ss_pred CC--CCCCCeEEEEccCCcHHHHHHHHhcc----C--CccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHH
Q 035488 171 GA--SYRGKRVLVVGCGNSGMEVSLDLCNH----N--AKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKIL 242 (408)
Q Consensus 171 ~~--~~~~~~v~VvG~G~~a~e~a~~l~~~----g--~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (408)
.. ...+++++|||+|.+|+|+|..|... | .+|+++ +.+ .+++.... +....
T Consensus 138 ~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~-----~~~~~-------------- 196 (364)
T TIGR03169 138 SADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPA-----KVRRL-------------- 196 (364)
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCH-----HHHHH--------------
Confidence 00 12467999999999999999999853 3 478888 444 33332111 11111
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCeEEEecCcEEccCEEEE
Q 035488 243 LILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGKVELVNGQVLEIDSVVL 320 (408)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~v~~~~g~~~~~D~vi~ 320 (408)
..+.+++.+|+++.+ +++++++.+.+.+|+++++|.+|+
T Consensus 197 ---------------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~ 237 (364)
T TIGR03169 197 ---------------------------------------VLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILW 237 (364)
T ss_pred ---------------------------------------HHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEE
Confidence 123445668888876 788887788888999999999999
Q ss_pred cCCCCCCCCCccccccc-ccCCCCCCCCCCCCCC-CCCceEEEeeccccC--------ccchhhHHHHHHHHHHHhhHHh
Q 035488 321 ATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWK-GKTGLYAVGFTKRGL--------SGASLDAMSVALDIAKSWKEET 390 (408)
Q Consensus 321 atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t-~~~~iya~Gd~~~~~--------~~a~~~a~~~a~~i~~~~~~~~ 390 (408)
|+|.+|+. ++...++ .+.+|++.+|. ..++ +.|+|||+|||+... ..|..||+.+|.+|...+.+.+
T Consensus 238 a~G~~p~~--~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 238 ATGARAPP--WLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred ccCCChhh--HHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 99999984 4444544 56678999884 4555 999999999998421 1578999999999999998765
Q ss_pred Hhh
Q 035488 391 KQK 393 (408)
Q Consensus 391 ~~~ 393 (408)
...
T Consensus 315 ~~~ 317 (364)
T TIGR03169 315 LRP 317 (364)
T ss_pred CCC
Confidence 443
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=2.8e-30 Score=260.78 Aligned_cols=282 Identities=24% Similarity=0.294 Sum_probs=178.2
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC----CCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF----PRVPHQF 93 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 93 (408)
..++|+||||||||++||..|+++|++|+|+|+.+.+||+++.. .+ .+..+.+. .++..+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-IP--------------~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-IP--------------QFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-cc--------------cccccHHHHHHHHHHHHHc
Confidence 35799999999999999999999999999999999999876432 11 11111111 1233355
Q ss_pred CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC---
Q 035488 94 DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS--- 170 (408)
Q Consensus 94 ~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~--- 170 (408)
++++++++.+ .+ .+.+. ....||+||||||++ .+..+.++|.+. .+++..++..
T Consensus 603 GVe~~~gt~V-di-----------~le~L-------~~~gYDaVILATGA~-~~~~l~IpG~~~---gV~saldfL~~~k 659 (1019)
T PRK09853 603 GVKFEFGCSP-DL-----------TVEQL-------KNEGYDYVVVAIGAD-KNGGLKLEGGNQ---NVIKALPFLEEYK 659 (1019)
T ss_pred CCEEEeCcee-EE-----------Ehhhh-------eeccCCEEEECcCCC-CCCCCCCCCccC---CceehHHHHHHHh
Confidence 7777777655 12 11111 345699999999963 344456776542 2233222211
Q ss_pred ---CCCCCCCeEEEEccCCcHHHHHHHHhcc-C-CccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHH
Q 035488 171 ---GASYRGKRVLVVGCGNSGMEVSLDLCNH-N-AKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLIL 245 (408)
Q Consensus 171 ---~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (408)
.....+++|+|||+|++|+|+|..+.+. | .+|++++|++...+|.... ++...
T Consensus 660 ~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e-----Ele~A----------------- 717 (1019)
T PRK09853 660 NKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE-----EYEEA----------------- 717 (1019)
T ss_pred hhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH-----HHHHH-----------------
Confidence 1223689999999999999999998887 4 4899999987433332211 11000
Q ss_pred HHHHhhhhhhcCCCCC-CCCCcccccCCCCCcccChhhhhhhc-cCCeEEecC-ccEEeCC----eEEEecCcEEccCEE
Q 035488 246 ARLILGNVEKYGLKRP-PTGPIELKNNEGKTPVLDIGALQKIR-SGDIKVVPG-IKKFSPG----KVELVNGQVLEIDSV 318 (408)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-i~~~~~~----~v~~~~g~~~~~D~v 318 (408)
.+.|+..- ...+ ..+. ++.+.+... +...+.. .+...+++++++|.|
T Consensus 718 --------leeGVe~~~~~~p------------------~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~V 771 (1019)
T PRK09853 718 --------LEDGVEFKELLNP------------------ESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTV 771 (1019)
T ss_pred --------HHcCCEEEeCCce------------------EEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEE
Confidence 11222100 0000 0000 111111100 0011111 122334568999999
Q ss_pred EEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHHHHHHhh
Q 035488 319 VLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALDIAKSWK 387 (408)
Q Consensus 319 i~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~~~~ 387 (408)
|+|+|..|+. .+++..++ .+.+|++.++ ...+|+.|+|||+||++.++. .|+.+|+.+|.+|.+...
T Consensus 772 IvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 772 ITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred EECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999998 67777766 5677888887 567899999999999986654 789999999999988664
No 51
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.6e-30 Score=251.47 Aligned_cols=275 Identities=21% Similarity=0.213 Sum_probs=182.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+||++.... +... .+..+ ......++.+++++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gi-p~~~--~~~~~--------~~~~~~~l~~~gv~~~ 208 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGI-PEFR--LPKDI--------VDREVERLLKLGVEIR 208 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccC-CCcc--CCHHH--------HHHHHHHHHHcCCEEE
Confidence 57999999999999999999999999999999998888654321 1100 00000 0011122334566666
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC--------
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS-------- 170 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~-------- 170 (408)
.++.+. .. +++.+ ..+.||+||+|||+. .+..+.+||.+. ..+++..++..
T Consensus 209 ~~~~v~--------~~--v~~~~--------~~~~~d~vvlAtGa~-~~~~~~i~G~~~--~gv~~~~~~l~~~~~~~~~ 267 (457)
T PRK11749 209 TNTEVG--------RD--ITLDE--------LRAGYDAVFIGTGAG-LPRFLGIPGENL--GGVYSAVDFLTRVNQAVAD 267 (457)
T ss_pred eCCEEC--------Cc--cCHHH--------HHhhCCEEEEccCCC-CCCCCCCCCccC--CCcEEHHHHHHHHhhcccc
Confidence 665541 11 22222 236899999999963 356667777642 12233222211
Q ss_pred CCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 035488 171 GASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLI 249 (408)
Q Consensus 171 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (408)
.....+++|+|||+|.+|+|+|..+.+.|. +|++++|++...+|....
T Consensus 268 ~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~------------------------------- 316 (457)
T PRK11749 268 YDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE------------------------------- 316 (457)
T ss_pred ccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-------------------------------
Confidence 112368999999999999999999999987 899999876322221110
Q ss_pred hhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe-----EEEe--------------
Q 035488 250 LGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK-----VELV-------------- 308 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~-----v~~~-------------- 308 (408)
..+.+++.+|+++.+ +.++.++. |.+.
T Consensus 317 --------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 317 --------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred --------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcc
Confidence 012223445565544 55554321 3331
Q ss_pred -----cCcEEccCEEEEcCCCCCCCCCccc-cccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 309 -----NGQVLEIDSVVLATGYRSNVPSWLK-ENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 309 -----~g~~~~~D~vi~atG~~~~~~~l~~-~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
+++++++|.||+++|++|+. .++. ..++ .+.+|++.+|...++|+.|+|||+||++.+.. .|+.+|+.+
T Consensus 365 ~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~a 443 (457)
T PRK11749 365 VPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDA 443 (457)
T ss_pred cCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHH
Confidence 23479999999999999996 5544 3344 56788898885478899999999999986543 789999999
Q ss_pred HHHHHHHhhHH
Q 035488 379 ALDIAKSWKEE 389 (408)
Q Consensus 379 a~~i~~~~~~~ 389 (408)
|.+|...+.+.
T Consensus 444 A~~I~~~l~g~ 454 (457)
T PRK11749 444 AEAIHEYLEGA 454 (457)
T ss_pred HHHHHHHHhcc
Confidence 99999998763
No 52
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=4.3e-30 Score=263.54 Aligned_cols=272 Identities=21% Similarity=0.222 Sum_probs=181.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCC----CCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPED----FPRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 94 (408)
.++|+|||||||||+||..|++.|++|+|||+.+.+||++.+. +|.+..+.+ ..+.+...|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------IP~~rlp~~vi~~~i~~l~~~G 370 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------IPEFRLPNQLIDDVVEKIKLLG 370 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------CCCCcChHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999999876532 222222211 122333567
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC----
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS---- 170 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~---- 170 (408)
++++.++.+- . .+++.+. ....||+|++|||+ ..|..+.+||.+. . .++...++..
T Consensus 371 v~f~~n~~vG--------~--dit~~~l-------~~~~yDAV~LAtGA-~~pr~l~IpG~dl-~-GV~~a~dfL~~~~~ 430 (944)
T PRK12779 371 GRFVKNFVVG--------K--TATLEDL-------KAAGFWKIFVGTGA-GLPTFMNVPGEHL-L-GVMSANEFLTRVNL 430 (944)
T ss_pred CeEEEeEEec--------c--EEeHHHh-------ccccCCEEEEeCCC-CCCCcCCCCCCcC-c-CcEEHHHHHHHHHh
Confidence 7776665441 1 1444432 34579999999996 3577788888643 1 1222222211
Q ss_pred -----------CCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHH
Q 035488 171 -----------GASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVD 239 (408)
Q Consensus 171 -----------~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (408)
.....+++|+|||+|++|+|+|..+.+.|++|++++|++...+|.... ++..
T Consensus 431 ~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~-----e~~~------------ 493 (944)
T PRK12779 431 MRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE-----ELHH------------ 493 (944)
T ss_pred hccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH-----HHHH------------
Confidence 112368999999999999999999999999999999886322221110 0000
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC---------------
Q 035488 240 KILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--------------- 302 (408)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--------------- 302 (408)
..+.| ++++.. ++++.+
T Consensus 494 -------------a~eeG---------------------------------V~~~~~~~p~~i~~d~~~~~V~~v~~~~~ 527 (944)
T PRK12779 494 -------------ALEEG---------------------------------INLAVLRAPREFIGDDHTHFVTHALLDVN 527 (944)
T ss_pred -------------HHHCC---------------------------------CEEEeCcceEEEEecCCCCEEEEEEEEEE
Confidence 01112 222211 222211
Q ss_pred -------Ce--EEEecC--cEEccCEEEEcCCCCCCCCCccc-cccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc
Q 035488 303 -------GK--VELVNG--QVLEIDSVVLATGYRSNVPSWLK-ENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS 369 (408)
Q Consensus 303 -------~~--v~~~~g--~~~~~D~vi~atG~~~~~~~l~~-~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~ 369 (408)
++ ....+| .++++|.||+|+|+.|+. .+.. ..++ .+.+|.+++|...++|+.|+|||+||+..+..
T Consensus 528 ~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~ 606 (944)
T PRK12779 528 ELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS 606 (944)
T ss_pred EeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH
Confidence 00 111123 469999999999999996 4432 2355 46689888885567899999999999998754
Q ss_pred ---cchhhHHHHHHHHHHHhhHH
Q 035488 370 ---GASLDAMSVALDIAKSWKEE 389 (408)
Q Consensus 370 ---~a~~~a~~~a~~i~~~~~~~ 389 (408)
.|+.+|+.+|.+|.+.+...
T Consensus 607 ~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 607 TAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999988654
No 53
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=2e-29 Score=248.74 Aligned_cols=192 Identities=19% Similarity=0.179 Sum_probs=136.3
Q ss_pred EEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 130 VEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 130 ~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.++.||+|||||| +.|.+|++++... ..+++..+.. .....+++++|||+|.+|+|+|..+...|.+|+++++.+
T Consensus 271 ~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~-~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 271 KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAV-KLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhh-hhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 5799999999999 7888877655432 1234433222 223357899999999999999999999999999999988
Q ss_pred ceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccC
Q 035488 210 VHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSG 289 (408)
Q Consensus 210 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (408)
.++|..+. +....+... .+++.
T Consensus 346 -~ll~~~d~-----eis~~l~~~----------------------------------------------------ll~~~ 367 (659)
T PTZ00153 346 -QLLPLLDA-----DVAKYFERV----------------------------------------------------FLKSK 367 (659)
T ss_pred -cccccCCH-----HHHHHHHHH----------------------------------------------------HhhcC
Confidence 56664432 222222111 12345
Q ss_pred CeEEecC--ccEEeCCe----EEE--ec-------C--------cEEccCEEEEcCCCCCCCCCc-ccccccccCCCCCC
Q 035488 290 DIKVVPG--IKKFSPGK----VEL--VN-------G--------QVLEIDSVVLATGYRSNVPSW-LKENEFFSENGIPK 345 (408)
Q Consensus 290 ~i~~~~~--i~~~~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~~~~~~l-~~~~~~~~~~g~~~ 345 (408)
+|+++.+ +.+++... +.+ .+ + +++++|.||+|+|++||+..+ ++..++..++|++.
T Consensus 368 GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~ 447 (659)
T PTZ00153 368 PVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVS 447 (659)
T ss_pred CcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEe
Confidence 6888777 66775431 322 21 1 379999999999999999444 45556654568888
Q ss_pred CCCCCCCCC------CCceEEEeeccccCc---cchhhHHHHHHHHHHH
Q 035488 346 NPFPNGWKG------KTGLYAVGFTKRGLS---GASLDAMSVALDIAKS 385 (408)
Q Consensus 346 ~~~~~~~t~------~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~~ 385 (408)
+| +.++|+ +|+|||+|||++.+. .|..||+.++++|.+.
T Consensus 448 VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 448 VD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 88 466665 699999999987654 6789999999999764
No 54
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.3e-29 Score=218.45 Aligned_cols=293 Identities=17% Similarity=0.204 Sum_probs=194.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------------cCCCCCCCeeeecCCccccCCCC-CCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL------------WQNRTYDRLKLHLPKQFCQLPNF-PFPED 85 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~------------w~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (408)
.+|.+|||||..|+++|++++.+|.++.|+|..-.+||+ |+...|....-+.. + +.++.. ....+
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~-~-yG~~~~~~~~fd 97 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAK-D-YGFPINEEGSFD 97 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhh-h-cCCccccccCCc
Confidence 689999999999999999999999999999998677772 43322222111100 0 011110 00001
Q ss_pred CC-------CCCCccCc---cccccceeEEEEEc---CCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCC
Q 035488 86 FP-------RVPHQFDI---NPRFNETVQSAKYD---ETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEF 152 (408)
Q Consensus 86 ~~-------~~~~~~~~---~~~~~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~ 152 (408)
|. .|..+++- +......|.-++-. ......+|+..++. . ..+++++++||+| ++|.+|.|
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~--~---~~Ytak~iLIAtG--g~p~~PnI 170 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT--K---IVYTAKHILIATG--GRPIIPNI 170 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe--e---EEEecceEEEEeC--CccCCCCC
Confidence 11 11111110 01112223322211 11133334444432 1 4699999999999 99999999
Q ss_pred CCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhh
Q 035488 153 EGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKY 232 (408)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 232 (408)
||.+. .+.+..+.+.++ .+++++|||+|++|+|+|..++.+|.++++++|.. .++..++. .+...
T Consensus 171 pG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~-----~i~~~---- 235 (478)
T KOG0405|consen 171 PGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE-----MISDL---- 235 (478)
T ss_pred Cchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH-----HHHHH----
Confidence 99763 255544444443 78999999999999999999999999999999998 44444433 22222
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC-----eE
Q 035488 233 FPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG-----KV 305 (408)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-----~v 305 (408)
..+.++..+|+++++ ++++... .+
T Consensus 236 -------------------------------------------------v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~ 266 (478)
T KOG0405|consen 236 -------------------------------------------------VTEHLEGRGINVHKNSSVTKVIKTDDGLELV 266 (478)
T ss_pred -------------------------------------------------HHHHhhhcceeecccccceeeeecCCCceEE
Confidence 233345567888877 5555332 24
Q ss_pred EEecCcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHH
Q 035488 306 ELVNGQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVAL 380 (408)
Q Consensus 306 ~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~ 380 (408)
....++...+|.++||+|+.|++..| ++..|+ .+..|.+++| +.+.||.|+||++||+++-+. .|..+|+.++.
T Consensus 267 i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~ 345 (478)
T KOG0405|consen 267 ITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLAN 345 (478)
T ss_pred EEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhhhHHH
Confidence 45566666799999999999999666 666688 5668888888 688899999999999988644 67788888887
Q ss_pred HHHHH
Q 035488 381 DIAKS 385 (408)
Q Consensus 381 ~i~~~ 385 (408)
.+-+.
T Consensus 346 rlF~~ 350 (478)
T KOG0405|consen 346 RLFGG 350 (478)
T ss_pred HhhcC
Confidence 77664
No 55
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=5.6e-29 Score=240.74 Aligned_cols=286 Identities=17% Similarity=0.242 Sum_probs=178.3
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-CCCCCCCeee-ec------CC--ccccCCCC--CCCCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW-QNRTYDRLKL-HL------PK--QFCQLPNF--PFPEDFPR 88 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w-~~~~~~~~~~-~~------~~--~~~~~~~~--~~~~~~~~ 88 (408)
+|+||||||+|++||..+++.|.+|+|||+++ +||+. +....+.-.+ .. .+ ..+..+.. ....++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 69999999999999999999999999999874 66632 2211221110 00 00 00111100 00011111
Q ss_pred CC------------------CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 89 VP------------------HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 89 ~~------------------~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.. .+.++++.. .++..++ . +...|+..++ . .+++||+|||||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~a~~~~--~--~~v~v~~~~~---~---~~~~~d~lviATG--s~p~~~ 147 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQ-GKASFET--D--HRVRVEYGDK---E---EVVDAEQFIIAAG--SEPTEL 147 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEE-EEEEEcc--C--CEEEEeeCCC---c---EEEECCEEEEeCC--CCCCCC
Confidence 10 011222222 1222221 1 4433443221 1 4799999999999 667666
Q ss_pred CCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHH
Q 035488 151 EFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMM 230 (408)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 230 (408)
++++... ..+++..+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. ++...+
T Consensus 148 p~~~~~~--~~v~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~-----e~~~~l- 217 (458)
T PRK06912 148 PFAPFDG--KWIINSKHAM-SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE-----DIAHIL- 217 (458)
T ss_pred CCCCCCC--CeEEcchHHh-CccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-----HHHHHH-
Confidence 6665432 1233332222 223357899999999999999999999999999999988 55554332 222211
Q ss_pred hhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC--eEE
Q 035488 231 KYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG--KVE 306 (408)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~--~v~ 306 (408)
.+.+++.+|+++.+ +.+++.+ .+.
T Consensus 218 ----------------------------------------------------~~~L~~~GI~i~~~~~V~~i~~~~~~v~ 245 (458)
T PRK06912 218 ----------------------------------------------------REKLENDGVKIFTGAALKGLNSYKKQAL 245 (458)
T ss_pred ----------------------------------------------------HHHHHHCCCEEEECCEEEEEEEcCCEEE
Confidence 22334557777776 6777543 244
Q ss_pred Ee-cC--cEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 307 LV-NG--QVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 307 ~~-~g--~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
+. ++ +++++|.||+|+|++|+...+ ++..++ .+.+| +.+| +.++|+.|+|||+||+..++. .|..+|+.+
T Consensus 246 ~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~a 323 (458)
T PRK06912 246 FEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTA 323 (458)
T ss_pred EEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHH
Confidence 43 34 368999999999999998433 445555 34455 7777 467799999999999997554 688999999
Q ss_pred HHHHHH
Q 035488 379 ALDIAK 384 (408)
Q Consensus 379 a~~i~~ 384 (408)
|.+|.+
T Consensus 324 a~~~~g 329 (458)
T PRK06912 324 ALHASG 329 (458)
T ss_pred HHHHcC
Confidence 999875
No 56
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=3.9e-29 Score=240.86 Aligned_cols=283 Identities=15% Similarity=0.128 Sum_probs=176.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--ccCCCCCCCeeeec------CCc--cccCCCCCCCCCCC-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS--LWQNRTYDRLKLHL------PKQ--FCQLPNFPFPEDFP- 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg--~w~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~- 87 (408)
.|||+|||+||+|..||.. ..|.+|+|||++ .+|| ++.-+......... .+. .+.........++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 3799999999999998654 469999999985 5777 33322211111100 000 00000000000000
Q ss_pred ------------------CCC---CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCC
Q 035488 88 ------------------RVP---HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAE 146 (408)
Q Consensus 88 ------------------~~~---~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~ 146 (408)
.+. ++.+++++.++.+.. +.++|++.++ .+++||+|||||| +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~g-------~~~~~d~lIiATG--s~ 142 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGDG-------EEITGDQIVIAAG--SR 142 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECCC-------cEEEeCEEEEEEC--CC
Confidence 000 113444444333221 2234666443 4799999999999 77
Q ss_pred CCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHH
Q 035488 147 KIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLA 226 (408)
Q Consensus 147 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~ 226 (408)
|..|++++... ..+....+.... ...+++++|||+|.+|+|+|..|...|.+|+++.+.+ .+++..+. ++.
T Consensus 143 p~~p~~~~~~~--~~~~~~~~~~~l-~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~ 213 (452)
T TIGR03452 143 PYIPPAIADSG--VRYHTNEDIMRL-PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE-----DIS 213 (452)
T ss_pred CCCCCCCCCCC--CEEEcHHHHHhh-hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH-----HHH
Confidence 77776433221 122232222221 2247899999999999999999999999999999987 44443322 211
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--
Q 035488 227 VLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP-- 302 (408)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~-- 302 (408)
..+. + +.+.+|+++.+ +.+++.
T Consensus 214 ~~l~-----------------------------------------------------~-~~~~gI~i~~~~~V~~i~~~~ 239 (452)
T TIGR03452 214 DRFT-----------------------------------------------------E-IAKKKWDIRLGRNVTAVEQDG 239 (452)
T ss_pred HHHH-----------------------------------------------------H-HHhcCCEEEeCCEEEEEEEcC
Confidence 1111 1 11234666655 666653
Q ss_pred Ce--EEEecCcEEccCEEEEcCCCCCCCCCc--cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhh
Q 035488 303 GK--VELVNGQVLEIDSVVLATGYRSNVPSW--LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLD 374 (408)
Q Consensus 303 ~~--v~~~~g~~~~~D~vi~atG~~~~~~~l--~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~ 374 (408)
++ +.+.+|+++++|.|++++|++|++ .+ ++..++ .+.+|++.+| +.++|+.|+|||+|||+..+. .|..|
T Consensus 240 ~~v~v~~~~g~~i~~D~vl~a~G~~pn~-~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~ 317 (452)
T TIGR03452 240 DGVTLTLDDGSTVTADVLLVATGRVPNG-DLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVANAE 317 (452)
T ss_pred CeEEEEEcCCCEEEcCEEEEeeccCcCC-CCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHHHH
Confidence 23 455678889999999999999998 55 344566 4578999988 467799999999999997644 67899
Q ss_pred HHHHHHHHHHH
Q 035488 375 AMSVALDIAKS 385 (408)
Q Consensus 375 a~~~a~~i~~~ 385 (408)
|+.+|.+|.+.
T Consensus 318 g~~~a~ni~~~ 328 (452)
T TIGR03452 318 ARVVKHNLLHP 328 (452)
T ss_pred HHHHHHHhcCC
Confidence 99999999754
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=1.4e-29 Score=258.23 Aligned_cols=271 Identities=20% Similarity=0.233 Sum_probs=179.1
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC----CCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF----PRVPHQF 93 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 93 (408)
..++|+||||||||++||..|++.|++|+|||+.+.+||++.+. ++.+.++.+. .+.+.++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCCCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999999999999998888876432 1111111111 1223355
Q ss_pred CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC----
Q 035488 94 DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK---- 169 (408)
Q Consensus 94 ~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~---- 169 (408)
+++++.++.+ . .. |++.+. ....||+||||||+ ..|..+.+||.+.. .+++..++.
T Consensus 495 gv~~~~~~~v------~--~~--v~~~~l-------~~~~ydavvlAtGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~ 554 (752)
T PRK12778 495 GVKFETDVIV------G--KT--ITIEEL-------EEEGFKGIFIASGA-GLPNFMNIPGENSN--GVMSSNEYLTRVN 554 (752)
T ss_pred CCEEECCCEE------C--Cc--CCHHHH-------hhcCCCEEEEeCCC-CCCCCCCCCCCCCC--CcEEHHHHHHHHh
Confidence 7777776544 1 11 333331 34679999999996 25777788886531 222222111
Q ss_pred ---------CCCCCCCCeEEEEccCCcHHHHHHHHhccCCc-cEEEEecCceeecccccCCchHHHHHHHHhhcchHHHH
Q 035488 170 ---------SGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK-PSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVD 239 (408)
Q Consensus 170 ---------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (408)
......+++|+|||+|++|+|+|..+.+.|.+ |++++|++...+|.... ++
T Consensus 555 ~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~-----e~-------------- 615 (752)
T PRK12778 555 LMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE-----EV-------------- 615 (752)
T ss_pred hcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH--------------
Confidence 11224679999999999999999999999987 99999886322222110 00
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C-e---EEE----
Q 035488 240 KILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G-K---VEL---- 307 (408)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~-~---v~~---- 307 (408)
+.+.+.+|+++.. +.++.. + . +.+
T Consensus 616 --------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~ 651 (752)
T PRK12778 616 --------------------------------------------KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKME 651 (752)
T ss_pred --------------------------------------------HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEE
Confidence 0111223333322 222211 0 0 111
Q ss_pred ---------------e-cCcEEccCEEEEcCCCCCCCCCccccc-cc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc
Q 035488 308 ---------------V-NGQVLEIDSVVLATGYRSNVPSWLKEN-EF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS 369 (408)
Q Consensus 308 ---------------~-~g~~~~~D~vi~atG~~~~~~~l~~~~-~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~ 369 (408)
. +...+++|.||+|+|+.|+. .++... ++ .+.+|++.+|. ..+|+.|+|||+||+..++.
T Consensus 652 ~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g~~ 729 (752)
T PRK12778 652 LGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRGGA 729 (752)
T ss_pred ecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCCcH
Confidence 1 11368999999999999997 555543 55 46678888884 55899999999999987654
Q ss_pred ---cchhhHHHHHHHHHHHhhH
Q 035488 370 ---GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 370 ---~a~~~a~~~a~~i~~~~~~ 388 (408)
.|..+|+.+|.+|.+.+.+
T Consensus 730 ~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 730 TVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999998764
No 58
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=250.90 Aligned_cols=272 Identities=20% Similarity=0.230 Sum_probs=178.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC----CCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF----PRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 94 (408)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||+|+... +.+..+.++ .+.+.+++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gi---------------p~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGI---------------PRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecC---------------CCCCCCHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999998875421 111111111 11223456
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC-----
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK----- 169 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~----- 169 (408)
+++++++.+ +. . ++..+ ....||+||+|||++ .+..+.+||.+.. .++...++.
T Consensus 258 v~i~~~~~v-~~-------d--v~~~~--------~~~~~DaVilAtGa~-~~~~~~ipG~~~~--gv~~~~~~l~~~~~ 316 (652)
T PRK12814 258 AEFRFNTVF-GR-------D--ITLEE--------LQKEFDAVLLAVGAQ-KASKMGIPGEELP--GVISGIDFLRNVAL 316 (652)
T ss_pred CEEEeCCcc-cC-------c--cCHHH--------HHhhcCEEEEEcCCC-CCCCCCCCCcCcC--CcEeHHHHHHHhhc
Confidence 666665543 11 0 22221 123599999999953 2345567775431 122222221
Q ss_pred CCCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHH
Q 035488 170 SGASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARL 248 (408)
Q Consensus 170 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 248 (408)
......+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|.... ++...
T Consensus 317 ~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----ei~~a-------------------- 371 (652)
T PRK12814 317 GTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----EIEEA-------------------- 371 (652)
T ss_pred CCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHH--------------------
Confidence 1223578999999999999999999999986 699999887333332211 11000
Q ss_pred HhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--Ce--------------------
Q 035488 249 ILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--GK-------------------- 304 (408)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~-------------------- 304 (408)
.+.| |+++.+ +.++.+ +.
T Consensus 372 -----~~eG---------------------------------V~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~ 413 (652)
T PRK12814 372 -----LAEG---------------------------------VSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRR 413 (652)
T ss_pred -----HHcC---------------------------------CcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCc
Confidence 1112 222211 122210 00
Q ss_pred EEEecC--cEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 305 VELVNG--QVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 305 v~~~~g--~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
....+| ..+++|.||+++|+.|+. .+++..++ .+.+|++.+|...++|+.|+|||+||+..++. .|..+|+.+
T Consensus 414 ~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~A 492 (652)
T PRK12814 414 PVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRA 492 (652)
T ss_pred ceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHH
Confidence 111123 268999999999999998 67776666 45679998886678899999999999987654 789999999
Q ss_pred HHHHHHHhhHHh
Q 035488 379 ALDIAKSWKEET 390 (408)
Q Consensus 379 a~~i~~~~~~~~ 390 (408)
|.+|...+.+++
T Consensus 493 A~~I~~~L~g~~ 504 (652)
T PRK12814 493 AHAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHHcCCC
Confidence 999999998654
No 59
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=5.4e-29 Score=252.75 Aligned_cols=286 Identities=18% Similarity=0.246 Sum_probs=171.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+||||||||++||..|++.|++|+|||+.+.+||+.... .+..+ .+... .. ...+....++++++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-IP~~r--lp~e~-------l~-~~ie~l~~~GVe~~ 605 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-IPEFR--ISAES-------IQ-KDIELVKFHGVEFK 605 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-ccccC--CCHHH-------HH-HHHHHHHhcCcEEE
Confidence 4799999999999999999999999999999999998865321 11110 00000 00 01122234466555
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC----C--CC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK----S--GA 172 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~----~--~~ 172 (408)
++.. .. +++.+. ....||+||||||++ .+..+.++|... .++...++. . ..
T Consensus 606 ~g~~----------~d--~~ve~l-------~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v~~avefL~~~~~~~~~ 662 (1012)
T TIGR03315 606 YGCS----------PD--LTVAEL-------KNQGYKYVILAIGAW-KHGPLRLEGGGE---RVLKSLEFLRAFKEGPTI 662 (1012)
T ss_pred Eecc----------cc--eEhhhh-------hcccccEEEECCCCC-CCCCCCcCCCCc---ceeeHHHHHHHhhccccc
Confidence 5421 01 111111 245699999999963 234445666432 122222221 1 12
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhcc-CC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNH-NA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLIL 250 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~-g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (408)
...+++|+|||+|.+|+|+|..+.+. |. +|++++|+....+|.... ++..
T Consensus 663 ~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e-----El~~----------------------- 714 (1012)
T TIGR03315 663 NPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE-----ELEE----------------------- 714 (1012)
T ss_pred cccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH-----HHHH-----------------------
Confidence 24689999999999999999998876 74 799999887333332211 1000
Q ss_pred hhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC-ccEEeCC--eEEEecC--cEEccCEEEEcCCCC
Q 035488 251 GNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG-IKKFSPG--KVELVNG--QVLEIDSVVLATGYR 325 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~--~v~~~~g--~~~~~D~vi~atG~~ 325 (408)
..+.|+..... .. ...+..+++++... +.+.+.. .....+| .++++|.||+|+|..
T Consensus 715 --aleeGVe~~~~----------~~-------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 715 --ALEDGVDFKEL----------LS-------PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred --HHHcCCEEEeC----------Cc-------eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 01122210000 00 00001111211100 0000111 1112233 368999999999999
Q ss_pred CCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHHHHHHh
Q 035488 326 SNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALDIAKSW 386 (408)
Q Consensus 326 ~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~~~ 386 (408)
|+. .+++..++ .+.+|++.+|....+|+.|+|||+||+..++. .|+.+|+.+|.+|.+..
T Consensus 776 Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 776 VDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 998 67777766 57789998885557899999999999986554 78999999999998654
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=7.8e-29 Score=231.85 Aligned_cols=286 Identities=19% Similarity=0.183 Sum_probs=179.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||++|+++|..|++.|++|++||+.+.++|++... ++.... +.. ... ...+.+.+.+++++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~--~~~-------~~~-~~~~~l~~~~i~~~ 86 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-IPEFRI--PIE-------RVR-EGVKELEEAGVVFH 86 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-Cccccc--CHH-------HHH-HHHHHHHhCCeEEe
Confidence 4689999999999999999999999999999999888765321 110000 000 000 00111223367777
Q ss_pred ccceeEEEEE--cCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeecc-------CC-
Q 035488 99 FNETVQSAKY--DETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAG-------DY- 168 (408)
Q Consensus 99 ~~~~V~~i~~--~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~-------~~- 168 (408)
.++.|..++. ....+.|........ . ..+.||+||+|||++ .+..|++||.+.. .+.... ..
T Consensus 87 ~~~~v~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~d~lviAtGs~-~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~ 158 (352)
T PRK12770 87 TRTKVCCGEPLHEEEGDEFVERIVSLE--E---LVKKYDAVLIATGTW-KSRKLGIPGEDLP--GVYSALEYLFRIRAAK 158 (352)
T ss_pred cCcEEeeccccccccccccccccCCHH--H---HHhhCCEEEEEeCCC-CCCcCCCCCcccc--CceeHHHHHHHhhhcc
Confidence 7777755432 111122222211110 0 247899999999952 4667788876531 122211 00
Q ss_pred ---CC---CCCCCCCeEEEEccCCcHHHHHHHHhccCCc-cEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHH
Q 035488 169 ---KS---GASYRGKRVLVVGCGNSGMEVSLDLCNHNAK-PSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241 (408)
Q Consensus 169 ---~~---~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (408)
.. .....+++++|||+|.+|+|+|..|...|.+ |+++.+++... . +.. ..
T Consensus 159 ~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-~-~~~--------~~------------- 215 (352)
T PRK12770 159 LGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-A-PAG--------KY------------- 215 (352)
T ss_pred ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-C-CCC--------HH-------------
Confidence 01 1123478999999999999999999988987 99998876210 0 000 00
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe----EEE--------
Q 035488 242 LLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK----VEL-------- 307 (408)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----v~~-------- 307 (408)
..+.+++.+|+++.+ +.++++.+ +.+
T Consensus 216 ----------------------------------------~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~ 255 (352)
T PRK12770 216 ----------------------------------------EIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEP 255 (352)
T ss_pred ----------------------------------------HHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCc
Confidence 011123334454443 34443221 111
Q ss_pred ------------ecCcEEccCEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---c
Q 035488 308 ------------VNGQVLEIDSVVLATGYRSNVPSWLKE-NEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---G 370 (408)
Q Consensus 308 ------------~~g~~~~~D~vi~atG~~~~~~~l~~~-~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~ 370 (408)
.+++.+++|.||+++|++|+. .+..+ .++ .+.+|++.+| ...+|+.|+||++|||+.++. .
T Consensus 256 ~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~vyaiGD~~~~~~~~~~ 333 (352)
T PRK12770 256 DESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVD-EKHMTSREGVFAAGDVVTGPSKIGK 333 (352)
T ss_pred CcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeC-CCcccCCCCEEEEcccccCcchHHH
Confidence 123579999999999999997 66555 555 4567888887 456789999999999987543 7
Q ss_pred chhhHHHHHHHHHHHhhH
Q 035488 371 ASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 371 a~~~a~~~a~~i~~~~~~ 388 (408)
|..+|+.+|.+|.+.|..
T Consensus 334 A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 334 AIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 899999999999988753
No 61
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=222.67 Aligned_cols=266 Identities=22% Similarity=0.286 Sum_probs=200.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV--PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDIN 96 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
.+.++|||+|++|..|+..+++.|. +++++.+...++ |+..++.. ..... ........++|.+..+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls~--~~~~~-~~~~a~r~~e~Yke~gIe 143 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLSK--FLLTV-GEGLAKRTPEFYKEKGIE 143 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhccc--ceeec-cccccccChhhHhhcCce
Confidence 4689999999999999999999985 888888777654 55533221 11111 111112334567778999
Q ss_pred ccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCC----
Q 035488 97 PRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGA---- 172 (408)
Q Consensus 97 ~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~---- 172 (408)
.++++.|+.++... +. |.+.++ ..+.|++++|||| +.+..|++||.+. .++....+..+..
T Consensus 144 ~~~~t~v~~~D~~~--K~--l~~~~G-------e~~kys~LilATG--s~~~~l~~pG~~~--~nv~~ireieda~~l~~ 208 (478)
T KOG1336|consen 144 LILGTSVVKADLAS--KT--LVLGNG-------ETLKYSKLIIATG--SSAKTLDIPGVEL--KNVFYLREIEDANRLVA 208 (478)
T ss_pred EEEcceeEEeeccc--cE--EEeCCC-------ceeecceEEEeec--CccccCCCCCccc--cceeeeccHHHHHHHHH
Confidence 99999999999877 55 888776 7999999999999 6888899999873 3344433333321
Q ss_pred -CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 035488 173 -SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILG 251 (408)
Q Consensus 173 -~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 251 (408)
.....+|+++|+|.+|+|+|..|...+.+||++++.+ +++|+... ..+.+..
T Consensus 209 ~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~----~~i~~~~---------------------- 261 (478)
T KOG1336|consen 209 AIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG----PSIGQFY---------------------- 261 (478)
T ss_pred HhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh----HHHHHHH----------------------
Confidence 1247889999999999999999999999999999998 77665322 0222222
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe------EEEecCcEEccCEEEEcCC
Q 035488 252 NVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK------VELVNGQVLEIDSVVLATG 323 (408)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~------v~~~~g~~~~~D~vi~atG 323 (408)
.+.+++.+|+++.+ +.+++++. |.+.+++++++|+|++.+|
T Consensus 262 -------------------------------~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG 310 (478)
T KOG1336|consen 262 -------------------------------EDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG 310 (478)
T ss_pred -------------------------------HHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec
Confidence 34456667777766 66666542 7889999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCc
Q 035488 324 YRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS 369 (408)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~ 369 (408)
.+|++ ++++.....+..|.+.++ ...+|+.|+|||+||++..+.
T Consensus 311 ~~p~t-~~~~~g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 311 IKPNT-SFLEKGILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred ccccc-ccccccceecccCCEeeh-hceeeccCCcccccceeeccc
Confidence 99999 766654357889999999 688999999999999986543
No 62
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=200.64 Aligned_cols=283 Identities=20% Similarity=0.236 Sum_probs=195.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCC-------CC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRV-------PH 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 91 (408)
+.+|+|||.|||+.+||+++++...+-+|+|--- .+ ..-++-++.....+..+|.++-...-+++ ..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~-----~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~ 81 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-AN-----GIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSE 81 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee-cc-----CcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHH
Confidence 4589999999999999999999999999999632 11 11223333344444555555432221222 22
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCC--CCcceeeeeccCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGL--QHFEGNVMHAGDYK 169 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~--~~~~~~~~~~~~~~ 169 (408)
+++.++.. .+|..++... +.|.|.++. +.+.+|.||+|||+..+ ...+||. ..|..+.+..|..|
T Consensus 82 r~Gt~i~t-EtVskv~~ss--kpF~l~td~--------~~v~~~avI~atGAsAk--Rl~~pg~ge~~fWqrGiSaCAVC 148 (322)
T KOG0404|consen 82 RFGTEIIT-ETVSKVDLSS--KPFKLWTDA--------RPVTADAVILATGASAK--RLHLPGEGEGEFWQRGISACAVC 148 (322)
T ss_pred hhcceeee-eehhhccccC--CCeEEEecC--------CceeeeeEEEeccccee--eeecCCCCcchHHhcccchhhcc
Confidence 55555544 5677777766 788888865 68999999999996443 3345554 33667788888888
Q ss_pred CCCC--CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHH
Q 035488 170 SGAS--YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILAR 247 (408)
Q Consensus 170 ~~~~--~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (408)
+... ++.|-++|||||.+|+|-|..|.+.+.+|.+++|++ ++ ..++.+.+
T Consensus 149 DGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd-~f-----------RAs~~Mq~---------------- 200 (322)
T KOG0404|consen 149 DGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD-HF-----------RASKIMQQ---------------- 200 (322)
T ss_pred cCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh-hh-----------hHHHHHHH----------------
Confidence 8654 889999999999999999999999999999999998 22 11111111
Q ss_pred HHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC----------eEEEecCcEEcc
Q 035488 248 LILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG----------KVELVNGQVLEI 315 (408)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----------~v~~~~g~~~~~ 315 (408)
+..++.+|+++.+ ..+..++ ++...+.+.+++
T Consensus 201 ------------------------------------ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v 244 (322)
T KOG0404|consen 201 ------------------------------------RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPV 244 (322)
T ss_pred ------------------------------------HHhcCCCeEEEechhhhhhccCcccccceEEEecccCccccccc
Confidence 2234456666665 2222222 123334457999
Q ss_pred CEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccC----ccchhhHHHHHHHHHHH
Q 035488 316 DSVVLATGYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGL----SGASLDAMSVALDIAKS 385 (408)
Q Consensus 316 D~vi~atG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~----~~a~~~a~~~a~~i~~~ 385 (408)
+-+++++|-.|++ +|++.-.-.|.+|++++......|++|++||+||+...- .+|...|..+|....+.
T Consensus 245 ~GlFf~IGH~Pat-~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~y 317 (322)
T KOG0404|consen 245 SGLFFAIGHSPAT-KFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERY 317 (322)
T ss_pred ceeEEEecCCchh-hHhcCceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHH
Confidence 9999999999999 888885447889999987677889999999999986532 24444444444443333
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=4.5e-28 Score=250.90 Aligned_cols=274 Identities=20% Similarity=0.208 Sum_probs=178.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC----CCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE----DFPRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 94 (408)
.++|+|||||||||+||..|++.|++|+|||+.+.+||..+.. ++.+..+. ...+.+.+++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------ip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------IPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------CCccCCCHHHHHHHHHHHHHCC
Confidence 5789999999999999999999999999999999888764421 11111111 1122334567
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC------
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY------ 168 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~------ 168 (408)
+++++++.+ . .. ++..+.. ....||+||||||+ ..|..+++||.+. ..+++..++
T Consensus 495 v~~~~~~~v------g--~~--~~~~~l~------~~~~yDaViIATGa-~~pr~l~IpG~~l--~gV~~a~~fL~~~~~ 555 (1006)
T PRK12775 495 VKIETNKVI------G--KT--FTVPQLM------NDKGFDAVFLGVGA-GAPTFLGIPGEFA--GQVYSANEFLTRVNL 555 (1006)
T ss_pred CEEEeCCcc------C--Cc--cCHHHHh------hccCCCEEEEecCC-CCCCCCCCCCcCC--CCcEEHHHHHHHHHh
Confidence 777776543 1 11 2221110 12468999999996 2467778888642 123333221
Q ss_pred --------CCCCCCCCCeEEEEccCCcHHHHHHHHhccCCc-cEEEEecCceeecccccCCchHHHHHHHHhhcchHHHH
Q 035488 169 --------KSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAK-PSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVD 239 (408)
Q Consensus 169 --------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (408)
.+.....+++|+|||+|++|+|+|..+.+.|.+ |++++|+.....|.... +
T Consensus 556 ~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~-----e--------------- 615 (1006)
T PRK12775 556 MGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE-----E--------------- 615 (1006)
T ss_pred cCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH-----H---------------
Confidence 122234689999999999999999999999874 88888765222121100 0
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C-e---EEE----
Q 035488 240 KILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G-K---VEL---- 307 (408)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~-~---v~~---- 307 (408)
.+.+.+.+|+++.+ +.++.. + . +.+
T Consensus 616 -------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~ 652 (1006)
T PRK12775 616 -------------------------------------------IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEME 652 (1006)
T ss_pred -------------------------------------------HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEE
Confidence 01122233444332 333321 1 1 111
Q ss_pred -------------ecC--cEEccCEEEEcCCCCCCCCCcccc-ccc-ccCCCCCCCCC----CCCCCCCCceEEEeeccc
Q 035488 308 -------------VNG--QVLEIDSVVLATGYRSNVPSWLKE-NEF-FSENGIPKNPF----PNGWKGKTGLYAVGFTKR 366 (408)
Q Consensus 308 -------------~~g--~~~~~D~vi~atG~~~~~~~l~~~-~~~-~~~~g~~~~~~----~~~~t~~~~iya~Gd~~~ 366 (408)
.+| .++++|.||+|+|+.|+. .++.. .++ .+.+|.+.+|. ..++|+.|+|||+||+..
T Consensus 653 l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~ 731 (1006)
T PRK12775 653 LGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP-IITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVT 731 (1006)
T ss_pred ecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh-hhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCC
Confidence 122 368999999999999997 55443 244 45678887774 367899999999999987
Q ss_pred cCc---cchhhHHHHHHHHHHHhhHHh
Q 035488 367 GLS---GASLDAMSVALDIAKSWKEET 390 (408)
Q Consensus 367 ~~~---~a~~~a~~~a~~i~~~~~~~~ 390 (408)
++. .|+.+|+.+|.+|...+.+..
T Consensus 732 G~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 732 GGATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 654 789999999999999997643
No 64
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=3.8e-28 Score=244.01 Aligned_cols=276 Identities=20% Similarity=0.241 Sum_probs=176.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
..++|+||||||||+++|..|++.|++|+|||+.+.+||++.+. ++..++ ++.+.. ...+.+.++++++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-ip~~~l--~~~~~~--------~~~~~~~~~Gv~~ 394 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-IPAFKL--DKSLLA--------RRREIFSAMGIEF 394 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-CCCccC--CHHHHH--------HHHHHHHHCCeEE
Confidence 35799999999999999999999999999999999999876542 111100 000000 0112233456677
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeec------------
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHA------------ 165 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~------------ 165 (408)
+.++.|. .. ++..+ ....||+|++|||++ .+..+.+||.+. .+ ++..
T Consensus 395 ~~~~~v~--------~~--i~~~~--------~~~~~DavilAtGa~-~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~ 453 (654)
T PRK12769 395 ELNCEVG--------KD--ISLES--------LLEDYDAVFVGVGTY-RSMKAGLPNEDA-PG-VYDALPFLIANTKQVM 453 (654)
T ss_pred ECCCEeC--------Cc--CCHHH--------HHhcCCEEEEeCCCC-CCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhc
Confidence 6666551 00 11111 124799999999963 333456666543 11 1110
Q ss_pred --cCCCC--CCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHH
Q 035488 166 --GDYKS--GASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDK 240 (408)
Q Consensus 166 --~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (408)
....+ .....+++|+|||+|.+|+|+|..+.+.|. +|++++|++...+|.... +
T Consensus 454 ~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~-----e---------------- 512 (654)
T PRK12769 454 GLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK-----E---------------- 512 (654)
T ss_pred cCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH-----H----------------
Confidence 00001 112468999999999999999999999986 699999876322332211 0
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--C-Ce---EEE-----
Q 035488 241 ILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--P-GK---VEL----- 307 (408)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~-~~---v~~----- 307 (408)
.+.+.+.+|+++.+ +.++. + +. |.+
T Consensus 513 ------------------------------------------~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 550 (654)
T PRK12769 513 ------------------------------------------VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRL 550 (654)
T ss_pred ------------------------------------------HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEe
Confidence 11112223333322 33332 1 11 111
Q ss_pred -------------ecC--cEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCC---CCCCCCCceEEEeeccccC
Q 035488 308 -------------VNG--QVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFP---NGWKGKTGLYAVGFTKRGL 368 (408)
Q Consensus 308 -------------~~g--~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~---~~~t~~~~iya~Gd~~~~~ 368 (408)
..| .++++|.||+|+|+.|+...+++..++ .+.+|.++++.. .++|+.|+|||+||+..+.
T Consensus 551 ~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~ 630 (654)
T PRK12769 551 GEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA 630 (654)
T ss_pred cCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC
Confidence 112 269999999999999996467777766 567888887632 3679999999999998776
Q ss_pred c---cchhhHHHHHHHHHHHhhH
Q 035488 369 S---GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 369 ~---~a~~~a~~~a~~i~~~~~~ 388 (408)
. .|+.+|+.+|.+|..++..
T Consensus 631 ~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 631 DLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCc
Confidence 5 6899999999999988754
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.95 E-value=2.6e-28 Score=236.34 Aligned_cols=281 Identities=23% Similarity=0.260 Sum_probs=178.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCC----CCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPED----FPRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 94 (408)
.++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.... +.+..+.+ ..+.+.+++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gi---------------p~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGI---------------PDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecC---------------CcccCCHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999999988764321 11111101 112233556
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC------
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY------ 168 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~------ 168 (408)
+++++++.+.. + ++... ....||+||+|||+. .+..+.+||.+.. .+.+..++
T Consensus 208 v~~~~~~~v~~-~---------~~~~~--------~~~~~d~vvlAtGa~-~~~~l~ipG~~~~--gV~~~~~~l~~~~~ 266 (471)
T PRK12810 208 IEFRTNVEVGK-D---------ITAEE--------LLAEYDAVFLGTGAY-KPRDLGIPGRDLD--GVHFAMDFLIQNTR 266 (471)
T ss_pred cEEEeCCEECC-c---------CCHHH--------HHhhCCEEEEecCCC-CCCcCCCCCccCC--CcEEHHHHHHHHHh
Confidence 77766665421 0 11111 235799999999952 3556677875431 12221110
Q ss_pred -------CCCCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHH
Q 035488 169 -------KSGASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDK 240 (408)
Q Consensus 169 -------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (408)
.......+++|+|||+|.+|+|+|..+...|. +|+.+.+.+ +|.... ... ...
T Consensus 267 ~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~------~~~---~~~------- 327 (471)
T PRK12810 267 RVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRR------NKN---NPW------- 327 (471)
T ss_pred hhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccc------ccc---cCC-------
Confidence 11123468999999999999999999888886 677544332 111110 000 000
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCccc-ChhhhhhhccCCeEEecC--ccEEeC--CeE---E-----E
Q 035488 241 ILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVL-DIGALQKIRSGDIKVVPG--IKKFSP--GKV---E-----L 307 (408)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~--i~~~~~--~~v---~-----~ 307 (408)
+.+ .....+.+.+.+|+++.+ +.++.+ +.+ . +
T Consensus 328 -----------------------------------~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 328 -----------------------------------PYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred -----------------------------------cccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 000 000112233445666554 555542 121 1 1
Q ss_pred ecC---------cEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhh
Q 035488 308 VNG---------QVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLD 374 (408)
Q Consensus 308 ~~g---------~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~ 374 (408)
.+| +.+++|.||+|+|..|+...+++..++ .+.+|.+++|...++|+.|+||++||+..+.. .|..+
T Consensus 373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~ 452 (471)
T PRK12810 373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAE 452 (471)
T ss_pred cCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHH
Confidence 122 479999999999999986467777766 56678888764467899999999999987654 68999
Q ss_pred HHHHHHHHHHHhhHH
Q 035488 375 AMSVALDIAKSWKEE 389 (408)
Q Consensus 375 a~~~a~~i~~~~~~~ 389 (408)
|+.+|.+|...+.+.
T Consensus 453 G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 453 GRQAARAIDAYLMGS 467 (471)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=1.1e-27 Score=231.05 Aligned_cols=275 Identities=20% Similarity=0.214 Sum_probs=176.0
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
..++|+||||||+|+++|..|++.|++|+++|+.+.+||++... ++..+. +..+ .....+++.++|+++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-ip~~~~--~~~~--------~~~~~~~~~~~Gv~~ 208 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-IPSFKL--DKAV--------LSRRREIFTAMGIEF 208 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-CccccC--CHHH--------HHHHHHHHHHCCCEE
Confidence 35789999999999999999999999999999999998876532 111100 0000 001122344567777
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccC----------
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGD---------- 167 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~---------- 167 (408)
+++++|.. . +...+ ....||.||+|||+.. +..+.+||.+.. .+.+..+
T Consensus 209 ~~~~~v~~--------~--~~~~~--------~~~~~D~vilAtGa~~-~~~~~i~g~~~~--gV~~a~~~l~~~~~~~~ 267 (467)
T TIGR01318 209 HLNCEVGR--------D--ISLDD--------LLEDYDAVFLGVGTYR-SMRGGLPGEDAP--GVLQALPFLIANTRQLM 267 (467)
T ss_pred ECCCEeCC--------c--cCHHH--------HHhcCCEEEEEeCCCC-CCcCCCCCcCCC--CcEEHHHHHHHHHHHhc
Confidence 77776521 1 11111 2347999999999532 233467775431 1121100
Q ss_pred -CC---C--CCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHH
Q 035488 168 -YK---S--GASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDK 240 (408)
Q Consensus 168 -~~---~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (408)
.. . .....+++++|||+|.+|+++|..+...|. +|++++|++...+|.... +
T Consensus 268 ~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~-----e---------------- 326 (467)
T TIGR01318 268 GLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR-----E---------------- 326 (467)
T ss_pred CCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH-----H----------------
Confidence 00 0 012367999999999999999999999985 799999987333332211 0
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC---Ce---EEE-----
Q 035488 241 ILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP---GK---VEL----- 307 (408)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~---~~---v~~----- 307 (408)
.+.+.+.+|+++.+ +.++.. +. +.+
T Consensus 327 ------------------------------------------~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~ 364 (467)
T TIGR01318 327 ------------------------------------------VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTAL 364 (467)
T ss_pred ------------------------------------------HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEe
Confidence 01111223343333 333321 01 111
Q ss_pred ---------------ecCcEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCC---CCCCCCCCceEEEeeccccC
Q 035488 308 ---------------VNGQVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPF---PNGWKGKTGLYAVGFTKRGL 368 (408)
Q Consensus 308 ---------------~~g~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~---~~~~t~~~~iya~Gd~~~~~ 368 (408)
.+...+++|.||+++|+.|+...+++..++ .+.+|++.+|. ...+|+.|+||++||+..+.
T Consensus 365 ~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~ 444 (467)
T TIGR01318 365 GEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA 444 (467)
T ss_pred cccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc
Confidence 122478999999999999986456666655 45678887763 35678999999999998765
Q ss_pred c---cchhhHHHHHHHHHHHhh
Q 035488 369 S---GASLDAMSVALDIAKSWK 387 (408)
Q Consensus 369 ~---~a~~~a~~~a~~i~~~~~ 387 (408)
. .|..+|+.+|.+|...+.
T Consensus 445 ~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 445 DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc
Confidence 4 689999999999988763
No 67
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.95 E-value=5.9e-27 Score=202.59 Aligned_cols=177 Identities=34% Similarity=0.662 Sum_probs=119.8
Q ss_pred EEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCccCCCCCCCeeeecCCcc---ccCCCCCC-----------CCCCC
Q 035488 23 VIVGAGPSGLAVAAGLKNQGVP-FIILERANCIASLWQNRTYDRLKLHLPKQF---CQLPNFPF-----------PEDFP 87 (408)
Q Consensus 23 vIIG~G~aGl~~A~~l~~~g~~-v~lie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~~-----------~~~~~ 87 (408)
+||||||+||++|..|+++|.+ ++|+|+++.+||.|... +....+..+..+ +..+++.. +..++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 99999999999999741 222222222211 11111100 00110
Q ss_pred ----------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 035488 88 ----------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQH 157 (408)
Q Consensus 88 ----------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~ 157 (408)
.+.++++++++++++|+++++.+ +.|.|++.++ .+++||+||+|||..+.|..|.+|| ..
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~-------~~~~a~~VVlAtG~~~~p~~p~~~g-~~ 149 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDG-------RTIRADRVVLATGHYSHPRIPDIPG-SA 149 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS--------EEEEEEEEE---SSCSB---S-TT-GG
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEec-------ceeeeeeEEEeeeccCCCCcccccc-cc
Confidence 11127788899999999999997 5699999875 5899999999999888999999998 22
Q ss_pred cceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCce
Q 035488 158 FEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVH 211 (408)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~ 211 (408)
+ ...+|+.++.+...+.+++|+|||+|.||+|+|..|++.|++|++++|++.|
T Consensus 150 ~-~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 150 F-RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp C-SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred c-cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 2 2778998888888889999999999999999999999999999999999855
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=6.2e-27 Score=234.19 Aligned_cols=275 Identities=18% Similarity=0.226 Sum_probs=176.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+||+|.+... ..++ +..+. ....+++..+|++++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip-~~~l--~~~~~--------~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP-PFKL--DKTVL--------SQRREIFTAMGIDFH 378 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC-cccC--CHHHH--------HHHHHHHHHCCeEEE
Confidence 578999999999999999999999999999999999998764321 1110 00000 001123335577777
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeec-----------cC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHA-----------GD 167 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~-----------~~ 167 (408)
++++|. .. ++..+ ....||+|++|||+. .+..+.+||.+. .+ +++. ..
T Consensus 379 ~~~~v~--------~~--~~~~~--------l~~~~DaV~latGa~-~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~ 437 (639)
T PRK12809 379 LNCEIG--------RD--ITFSD--------LTSEYDAVFIGVGTY-GMMRADLPHEDA-PG-VIQALPFLTAHTRQLMG 437 (639)
T ss_pred cCCccC--------Cc--CCHHH--------HHhcCCEEEEeCCCC-CCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhcc
Confidence 766551 11 22221 234689999999963 334456776543 11 1110 00
Q ss_pred CCC-----CCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHH
Q 035488 168 YKS-----GASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKI 241 (408)
Q Consensus 168 ~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (408)
... .....+++|+|||+|.+|+++|..+.+.|. +|++++|++...+|.... ++.
T Consensus 438 ~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~-----e~~--------------- 497 (639)
T PRK12809 438 LPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK-----EVV--------------- 497 (639)
T ss_pred CccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHH---------------
Confidence 000 122468999999999999999999998885 799999876322222211 100
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC---CeE-----------
Q 035488 242 LLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP---GKV----------- 305 (408)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~---~~v----------- 305 (408)
...+.+|+++.. ++++.. +.+
T Consensus 498 -------------------------------------------~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 498 -------------------------------------------NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred -------------------------------------------HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence 011122333222 233321 001
Q ss_pred ----------EE--ecCcEEccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCC---CCCCCCCCceEEEeeccccCc
Q 035488 306 ----------EL--VNGQVLEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPF---PNGWKGKTGLYAVGFTKRGLS 369 (408)
Q Consensus 306 ----------~~--~~g~~~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~---~~~~t~~~~iya~Gd~~~~~~ 369 (408)
.. .+...+++|.||+|+|+.|+...+++..++ .+.+|++.++. ..++|+.|+|||+||+..+..
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~ 614 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD 614 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch
Confidence 11 112368999999999999986466776666 46678877663 246799999999999987665
Q ss_pred ---cchhhHHHHHHHHHHHhhH
Q 035488 370 ---GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 370 ---~a~~~a~~~a~~i~~~~~~ 388 (408)
.|..+|+.+|.+|+..+..
T Consensus 615 ~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 615 LVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999998865
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.1e-27 Score=203.45 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=202.1
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCC---CCCCCCCCccC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFP---EDFPRVPHQFD 94 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 94 (408)
..|||+||||||||.+||++.++.|++.-++-. .+||+-.. .+.. -.+.+.+...-+ ..+.+..+++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvld----T~~I---ENfIsv~~teGpkl~~ale~Hv~~Y~ 280 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLD----TMGI---ENFISVPETEGPKLAAALEAHVKQYD 280 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeecc----ccch---hheeccccccchHHHHHHHHHHhhcC
Confidence 479999999999999999999999998766542 46664211 1100 001111111110 01122333678
Q ss_pred ccccccceeEEEEEcCCC-CcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCC
Q 035488 95 INPRFNETVQSAKYDETF-GFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGAS 173 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~-~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 173 (408)
+++..-.+++.+.+.... +.+.|++.++ ..++++.+|+||| .+++--.+||.++|....+..|..|+...
T Consensus 281 vDimn~qra~~l~~a~~~~~l~ev~l~nG-------avLkaktvIlstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPL 351 (520)
T COG3634 281 VDVMNLQRASKLEPAAVEGGLIEVELANG-------AVLKARTVILATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPL 351 (520)
T ss_pred chhhhhhhhhcceecCCCCccEEEEecCC-------ceeccceEEEecC--cchhcCCCCchHHHhhCCeeeCCCCCCcc
Confidence 888777888888875332 4677888887 7899999999999 55565688998888777788899999999
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhh
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNV 253 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (408)
+.+|+|+|||||+||+|.|..|+..-..||++.-.+ .+ +...-+.+.+
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~-eL-----------kAD~VLq~kl-------------------- 399 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-EL-----------KADAVLQDKL-------------------- 399 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhheeeeeecch-hh-----------hhHHHHHHHH--------------------
Confidence 999999999999999999999999888899886544 11 1111111111
Q ss_pred hhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe-----EEEe---cCc--EEccCEEEEc
Q 035488 254 EKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK-----VELV---NGQ--VLEIDSVVLA 321 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~-----v~~~---~g~--~~~~D~vi~a 321 (408)
..-.+++++++ -+++.+++ +... +|+ .+.-+-|++-
T Consensus 400 --------------------------------~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVq 447 (520)
T COG3634 400 --------------------------------RSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQ 447 (520)
T ss_pred --------------------------------hcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEE
Confidence 12246777777 56776652 3332 333 4566789999
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeeccccCc----cchhhHHHHHHHHHHHh
Q 035488 322 TGYRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS----GASLDAMSVALDIAKSW 386 (408)
Q Consensus 322 tG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~----~a~~~a~~~a~~i~~~~ 386 (408)
+|..||+ .|+++..-.+.+|-+++| ....|+.|+|||+|||+..+. .++..|..++...-.++
T Consensus 448 IGL~PNT-~WLkg~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 448 IGLLPNT-EWLKGAVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred EecccCh-hHhhchhhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 9999999 999998447889999998 578899999999999987654 66666666665554444
No 70
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=4.5e-26 Score=200.55 Aligned_cols=299 Identities=15% Similarity=0.172 Sum_probs=185.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-CCCCCCCeeeecCCccccC--------CCC---CCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW-QNRTYDRLKLHLPKQFCQL--------PNF---PFPEDF 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w-~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~ 86 (408)
.+||+|||+||+|..||+++++.|++.+++|++..+||+- +....+.-.+-....+|.. ... +...++
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 5899999999999999999999999999999999998842 1111111111000111100 000 111111
Q ss_pred CCCCC---------ccCccccc-cceeEEEEEcCC-CCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCC
Q 035488 87 PRVPH---------QFDINPRF-NETVQSAKYDET-FGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGL 155 (408)
Q Consensus 87 ~~~~~---------~~~~~~~~-~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~ 155 (408)
....+ .-++...| .-.|+-+.--.. .+..+|+....++.. ..++++++|||||+- .+ ++||.
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~---~ii~aKnIiiATGSe-V~---~~PGI 191 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGED---QIIKAKNIIIATGSE-VT---PFPGI 191 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCc---eEEeeeeEEEEeCCc-cC---CCCCe
Confidence 11111 00111111 112222211000 011225555544444 789999999999942 22 44555
Q ss_pred CCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcch
Q 035488 156 QHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPL 235 (408)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 235 (408)
.- .+..+.+++-.-...+-+++++|||+|.+|+|+..-..++|.+||++.-.+ .+.+..+. +++..+.+.|
T Consensus 192 ~I-DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~-----Eisk~~qr~L-- 262 (506)
T KOG1335|consen 192 TI-DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDG-----EISKAFQRVL-- 262 (506)
T ss_pred Ee-cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCH-----HHHHHHHHHH--
Confidence 42 223344455555556689999999999999999999999999999998877 55555554 5555555444
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--C-e--EEEe
Q 035488 236 WLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--G-K--VELV 308 (408)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~-~--v~~~ 308 (408)
.+++ +..+.+ +...+. + . |.+.
T Consensus 263 ------------------~kQg---------------------------------ikF~l~tkv~~a~~~~dg~v~i~ve 291 (506)
T KOG1335|consen 263 ------------------QKQG---------------------------------IKFKLGTKVTSATRNGDGPVEIEVE 291 (506)
T ss_pred ------------------HhcC---------------------------------ceeEeccEEEEeeccCCCceEEEEE
Confidence 3333 222222 222221 1 1 2222
Q ss_pred ---c--CcEEccCEEEEcCCCCCCCCCc-cccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 309 ---N--GQVLEIDSVVLATGYRSNVPSW-LKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 309 ---~--g~~~~~D~vi~atG~~~~~~~l-~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
+ .+.++||.+++++|++|-+..| ++..++ .|.+|.+.++ ...+|..|+||++||+..+++ -|..||..+
T Consensus 292 ~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~ 370 (506)
T KOG1335|consen 292 NAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAA 370 (506)
T ss_pred ecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhhchhh
Confidence 2 2478999999999999999666 666666 6788998888 567899999999999999888 456777777
Q ss_pred HHHHHHH
Q 035488 379 ALDIAKS 385 (408)
Q Consensus 379 a~~i~~~ 385 (408)
.+.|...
T Consensus 371 VE~i~g~ 377 (506)
T KOG1335|consen 371 VEGIAGG 377 (506)
T ss_pred eeeeccc
Confidence 7776654
No 71
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=2.7e-26 Score=220.78 Aligned_cols=274 Identities=16% Similarity=0.217 Sum_probs=179.8
Q ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeee-ecCCccccCCCCCCCCCCCCCCCccCccccccceeEEEEEc
Q 035488 33 AVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKL-HLPKQFCQLPNFPFPEDFPRVPHQFDINPRFNETVQSAKYD 109 (408)
Q Consensus 33 ~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~~ 109 (408)
+||..|++.+ ++|+|||+++.+. |.+... .........+..........+..+++++++.+++|+.++..
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~ 73 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-------FANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDE 73 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-------EEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECC
Confidence 4788888874 7899999998643 111100 00000000000000000012234668888888999999876
Q ss_pred CCCCcEEEEEeecCCCCcceEEEE--eCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC-------CCCCCCeEE
Q 035488 110 ETFGFWRIKTISSSDSSFCEVEYI--CRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG-------ASYRGKRVL 180 (408)
Q Consensus 110 ~~~~~~~V~~~~~~~~~~~~~~i~--ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ 180 (408)
+ +. |.+.+..+. ..+. ||+|||||| +.|..|.+||.+. ..+++.....+. ....+++|+
T Consensus 74 ~--~~--v~~~~~~~~----~~~~~~yd~lIiATG--~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vv 141 (427)
T TIGR03385 74 R--QT--VVVRNNKTN----ETYEESYDYLILSPG--ASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVV 141 (427)
T ss_pred C--CE--EEEEECCCC----CEEecCCCEEEECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEE
Confidence 5 55 444432211 3566 999999999 6888888888652 122222221111 013578999
Q ss_pred EEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCC
Q 035488 181 VVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKR 260 (408)
Q Consensus 181 VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (408)
|||+|.+|+|+|..|.+.|.+|+++.+.+....+.... +....
T Consensus 142 ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~-----~~~~~-------------------------------- 184 (427)
T TIGR03385 142 IIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDE-----EMNQI-------------------------------- 184 (427)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCH-----HHHHH--------------------------------
Confidence 99999999999999999999999999887221121111 11111
Q ss_pred CCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe--EEEecCcEEccCEEEEcCCCCCCCCCcccccc
Q 035488 261 PPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK--VELVNGQVLEIDSVVLATGYRSNVPSWLKENE 336 (408)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~--v~~~~g~~~~~D~vi~atG~~~~~~~l~~~~~ 336 (408)
..+.+++.+|+++.+ +.+++.++ +.+.+|+.+++|.+|+|+|++|+. .+++..+
T Consensus 185 ---------------------~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~-~~l~~~g 242 (427)
T TIGR03385 185 ---------------------VEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS-ELAKDSG 242 (427)
T ss_pred ---------------------HHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH-HHHHhcC
Confidence 123344557888766 77776654 366788899999999999999998 6777776
Q ss_pred c-ccCCCCCCCCCCCCCCCCCceEEEeecccc-------------CccchhhHHHHHHHHHHH
Q 035488 337 F-FSENGIPKNPFPNGWKGKTGLYAVGFTKRG-------------LSGASLDAMSVALDIAKS 385 (408)
Q Consensus 337 ~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~-------------~~~a~~~a~~~a~~i~~~ 385 (408)
+ .+.+|++.+| +.++|+.|+|||+|||+.. ...|..||+.+|++|.+.
T Consensus 243 l~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 243 LKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred cccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 6 4567889888 4577899999999999752 126788999999999754
No 72
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=1.8e-26 Score=230.65 Aligned_cols=270 Identities=19% Similarity=0.219 Sum_probs=168.3
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCC----CCCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPED----FPRVPHQF 93 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 93 (408)
..++|+|||+|++|+++|..|+++|++|+|+|+.+.+||.+... ++....+.+ ..+.+.++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCcccCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999999999999999888865421 111111111 01233355
Q ss_pred CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCC---
Q 035488 94 DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKS--- 170 (408)
Q Consensus 94 ~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~--- 170 (408)
++++++++.|.. . ++... ....||+||+|||+. .+..+++||.+.. .++...++..
T Consensus 347 gv~~~~~~~v~~--------~--~~~~~--------~~~~yD~vilAtGa~-~~r~l~i~G~~~~--gv~~a~~~l~~~~ 405 (604)
T PRK13984 347 GVKIHLNTRVGK--------D--IPLEE--------LREKHDAVFLSTGFT-LGRSTRIPGTDHP--DVIQALPLLREIR 405 (604)
T ss_pred CcEEECCCEeCC--------c--CCHHH--------HHhcCCEEEEEcCcC-CCccCCCCCcCCc--CeEeHHHHHHHHH
Confidence 777777766521 0 11111 235799999999952 3566678886531 1222211111
Q ss_pred ------C-CCCCCCeEEEEccCCcHHHHHHHHhccCC------ccEEEEec-CceeecccccCCchHHHHHHHHhhcchH
Q 035488 171 ------G-ASYRGKRVLVVGCGNSGMEVSLDLCNHNA------KPSMVVRS-SVHVLPREVLGKSTFQLAVLMMKYFPLW 236 (408)
Q Consensus 171 ------~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g~------~V~~~~r~-~~~~~p~~~~~~~~~~~~~~~~~~l~~~ 236 (408)
. ....+++|+|||+|.+|+|+|..+.+.+. +|+++... ....+|.... ++.
T Consensus 406 ~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~-----e~~---------- 470 (604)
T PRK13984 406 DYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME-----EIE---------- 470 (604)
T ss_pred hhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH-----HHH----------
Confidence 0 11247899999999999999999998753 67776432 1111111110 000
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC--Ce---EE---
Q 035488 237 LVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP--GK---VE--- 306 (408)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~--~~---v~--- 306 (408)
...+. +|+++.+ +.++.. +. +.
T Consensus 471 ---------------~~~~~---------------------------------GV~i~~~~~~~~i~~~~g~v~~v~~~~ 502 (604)
T PRK13984 471 ---------------EGLEE---------------------------------GVVIYPGWGPMEVVIENDKVKGVKFKK 502 (604)
T ss_pred ---------------HHHHc---------------------------------CCEEEeCCCCEEEEccCCEEEEEEEEE
Confidence 00111 2222221 212210 00 10
Q ss_pred ----------------EecCcEEccCEEEEcCCCCCCCCCcccc-c--ccccCCCCCCCCCCCCCCCCCceEEEeecccc
Q 035488 307 ----------------LVNGQVLEIDSVVLATGYRSNVPSWLKE-N--EFFSENGIPKNPFPNGWKGKTGLYAVGFTKRG 367 (408)
Q Consensus 307 ----------------~~~g~~~~~D~vi~atG~~~~~~~l~~~-~--~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~ 367 (408)
..+++++++|.||+|+|+.|++ .++.. . ++...+|.+++| ..++|+.|+|||+||++.+
T Consensus 503 ~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~-~~l~~~~~~~l~~~~G~i~vd-~~~~Ts~~gVfAaGD~~~~ 580 (604)
T PRK13984 503 CVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDY-SYLPEELKSKLEFVRGRILTN-EYGQTSIPWLFAGGDIVHG 580 (604)
T ss_pred EeeccCCCCCccceecCCceEEEECCEEEEeeCCCCCh-hhhhhhhccCccccCCeEEeC-CCCccCCCCEEEecCcCCc
Confidence 1123479999999999999998 44432 2 243357888888 5788999999999999876
Q ss_pred Cc--cchhhHHHHHHHHHHHhhH
Q 035488 368 LS--GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 368 ~~--~a~~~a~~~a~~i~~~~~~ 388 (408)
+. .|..+|+.+|.+|...+.+
T Consensus 581 ~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 581 PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 7899999999999998754
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=225.43 Aligned_cols=271 Identities=21% Similarity=0.272 Sum_probs=174.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC----CCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF----PRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 94 (408)
.++|+|||+||+|+++|..|++.|++|+++|+.+.+||.++.. ++.+.++.+. .+.+.+++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~~~~~~~~~~l~~~~~~G 201 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYRLPREVLDAEIQRILDLG 201 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCccCCHHHHHHHHHHHHHCC
Confidence 5689999999999999999999999999999999999876432 1111111111 11222445
Q ss_pred cccccccee-EEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC----
Q 035488 95 INPRFNETV-QSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK---- 169 (408)
Q Consensus 95 ~~~~~~~~V-~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~---- 169 (408)
+++.+++.+ ..+. ... ....||+|++|+|... +....+++... .+ ++....+.
T Consensus 202 v~~~~~~~~~~~~~-----------~~~--------~~~~~D~Vi~AtG~~~-~~~~~i~g~~~-~g-v~~~~~~l~~~~ 259 (564)
T PRK12771 202 VEVRLGVRVGEDIT-----------LEQ--------LEGEFDAVFVAIGAQL-GKRLPIPGEDA-AG-VLDAVDFLRAVG 259 (564)
T ss_pred CEEEeCCEECCcCC-----------HHH--------HHhhCCEEEEeeCCCC-CCcCCCCCCcc-CC-cEEHHHHHHHhh
Confidence 555555443 1111 000 1235899999999632 23335666432 11 12211111
Q ss_pred -CCCCCCCCeEEEEccCCcHHHHHHHHhccC-CccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHH
Q 035488 170 -SGASYRGKRVLVVGCGNSGMEVSLDLCNHN-AKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILAR 247 (408)
Q Consensus 170 -~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (408)
......+++++|+|+|.+|++++..+.+.+ .+|++++|.+...++.... ++
T Consensus 260 ~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~-----~~---------------------- 312 (564)
T PRK12771 260 EGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE-----EI---------------------- 312 (564)
T ss_pred ccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH-----HH----------------------
Confidence 112346899999999999999999998888 5799999876322221110 00
Q ss_pred HHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe----------EEE----e---
Q 035488 248 LILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK----------VEL----V--- 308 (408)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~----------v~~----~--- 308 (408)
+...+.+|+++.+ +.++.++. +.. .
T Consensus 313 ------------------------------------~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~ 356 (564)
T PRK12771 313 ------------------------------------EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR 356 (564)
T ss_pred ------------------------------------HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence 0111223343332 33332211 110 0
Q ss_pred ----cC--cEEccCEEEEcCCCCCCCCCcccc-cccccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHH
Q 035488 309 ----NG--QVLEIDSVVLATGYRSNVPSWLKE-NEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSV 378 (408)
Q Consensus 309 ----~g--~~~~~D~vi~atG~~~~~~~l~~~-~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~ 378 (408)
+| .++++|.||+|+|+.|+. .++++ .++.+.+|++.+|...+.|+.|+||++||+..++. .|..+|+.+
T Consensus 357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~a 435 (564)
T PRK12771 357 PSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKA 435 (564)
T ss_pred eeecCCceEEEECCEEEECcCCCCch-hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHH
Confidence 22 478999999999999987 66664 45556789998886578899999999999987554 789999999
Q ss_pred HHHHHHHhhHHh
Q 035488 379 ALDIAKSWKEET 390 (408)
Q Consensus 379 a~~i~~~~~~~~ 390 (408)
|.+|...+.+.+
T Consensus 436 A~~i~~~L~g~~ 447 (564)
T PRK12771 436 ARNIDAFLGGEP 447 (564)
T ss_pred HHHHHHHHcCCC
Confidence 999999997543
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.93 E-value=2.4e-25 Score=215.66 Aligned_cols=303 Identities=19% Similarity=0.228 Sum_probs=173.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC----CCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE----DFPRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 94 (408)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||...+. ++.+..+. ...+++.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CCCccCCHHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999999888754321 11111110 1112334557
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccC-------
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGD------- 167 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~------- 167 (408)
+++++++.|. .+ ++... ....||.|++|||+. .+..+++||.+. .+ +....+
T Consensus 208 v~~~~~~~v~-~~---------~~~~~--------~~~~~d~VilAtGa~-~~~~l~i~G~~~-~g-V~~~~~~l~~~~~ 266 (485)
T TIGR01317 208 IDFVTNTEIG-VD---------ISADE--------LKEQFDAVVLAGGAT-KPRDLPIPGREL-KG-IHYAMEFLPSATK 266 (485)
T ss_pred CEEECCCEeC-Cc---------cCHHH--------HHhhCCEEEEccCCC-CCCcCCCCCcCC-CC-cEeHHHHHHHHhh
Confidence 7777776662 00 11111 245799999999953 366778888642 11 111110
Q ss_pred -CC-------CCCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHH
Q 035488 168 -YK-------SGASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLV 238 (408)
Q Consensus 168 -~~-------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 238 (408)
.. ......+++|+|||+|++|+|+|..+.+.|. +|+++++.+ ..+...... ..+|.+..
T Consensus 267 ~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~~-----------~~~~~~~~ 334 (485)
T TIGR01317 267 ALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAKD-----------NPWPEWPR 334 (485)
T ss_pred hhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhcccc-----------cCCCccch
Confidence 01 0112468999999999999999988888775 799998776 222111000 00000000
Q ss_pred HH-HHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhcc--CCeEEecCccEE----eCCe---EEE-
Q 035488 239 DK-ILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRS--GDIKVVPGIKKF----SPGK---VEL- 307 (408)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~i~~~----~~~~---v~~- 307 (408)
.. ......+ .....|+.. .. +.....+...+ +.+.-.. ..++ ++++ ...
T Consensus 335 ~~e~~~a~~e----~~~~~gv~~-----~~----------~~~~~~~i~~~~~g~v~~v~-~~~~~~~~~~~Gr~~p~~~ 394 (485)
T TIGR01317 335 VYRVDYAHEE----AAAHYGRDP-----RE----------YSILTKEFIGDDEGKVTALR-TVRVEWKKSQDGKWQFVEI 394 (485)
T ss_pred hhhhHHHHHh----hhhhcCccc-----eE----------EecCcEEEEEcCCCeEEEEE-EEEEEeccCCCCCccceec
Confidence 00 0000000 000011100 00 00000000000 0111000 0000 0011 111
Q ss_pred -ecCcEEccCEEEEcCCCC-CCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHH
Q 035488 308 -VNGQVLEIDSVVLATGYR-SNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALD 381 (408)
Q Consensus 308 -~~g~~~~~D~vi~atG~~-~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~ 381 (408)
.+..++++|.||+|+|+. |+. .+++..++ .+.+|.++++...++|+.|+|||+||++.+.. .|..+|+.+|.+
T Consensus 395 ~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~ 473 (485)
T TIGR01317 395 PGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAA 473 (485)
T ss_pred CCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHH
Confidence 122379999999999996 777 67777777 46678885554678899999999999987654 689999999999
Q ss_pred HHHHhhHHh
Q 035488 382 IAKSWKEET 390 (408)
Q Consensus 382 i~~~~~~~~ 390 (408)
|...+.+.+
T Consensus 474 i~~~L~g~~ 482 (485)
T TIGR01317 474 VDRYLMGSS 482 (485)
T ss_pred HHHHHhcCC
Confidence 999987643
No 75
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.5e-25 Score=191.88 Aligned_cols=310 Identities=17% Similarity=0.193 Sum_probs=187.0
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCCC-ccCCC-------CCCCeeeecCCcc----cc--CCCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA-NCIAS-LWQNR-------TYDRLKLHLPKQF----CQ--LPNFP 81 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~-~~~gg-~w~~~-------~~~~~~~~~~~~~----~~--~~~~~ 81 (408)
...||++|||||.+||+||..++..|.+|.++|-- +.+-| .|.-. ..+.-.|+...-+ .. -..|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34799999999999999999999999999999973 33333 45421 1111111111000 00 00111
Q ss_pred -----CCCCCCCCCC-------cc--Ccccccc-ceeEEEEEcCC-CCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 82 -----FPEDFPRVPH-------QF--DINPRFN-ETVQSAKYDET-FGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 82 -----~~~~~~~~~~-------~~--~~~~~~~-~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
...+|..+.+ .. +-++.++ .+|.-++.-.+ .+.+++...+..+.+ ..++++.+||||| .
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~---~~~ta~~fvIatG--~ 171 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKE---RFLTAENFVIATG--L 171 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCce---EEeecceEEEEec--C
Confidence 1112211111 11 1111111 12332321110 123445555554444 7899999999999 8
Q ss_pred CCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHH
Q 035488 146 EKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQL 225 (408)
Q Consensus 146 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~ 225 (408)
+|..|.|||..++ .+++.++. ...+.+-+.+|||+|.+|+|+|..|+..|.+|+++.|+- ++..++. +.
T Consensus 172 RPrYp~IpG~~Ey---~ITSDDlF-sl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDq-----dm 240 (503)
T KOG4716|consen 172 RPRYPDIPGAKEY---GITSDDLF-SLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQ-----DM 240 (503)
T ss_pred CCCCCCCCCceee---eecccccc-cccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccH-----HH
Confidence 9999999997654 35555444 445567778899999999999999999999999999985 4455554 44
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecCccEEeCCeE
Q 035488 226 AVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPGIKKFSPGKV 305 (408)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~v 305 (408)
...+...| +++|+.+..- +.....+.+.++.+++... ..
T Consensus 241 ae~v~~~m--------------------~~~Gikf~~~--------------~vp~~Veq~~~g~l~v~~k-------~t 279 (503)
T KOG4716|consen 241 AELVAEHM--------------------EERGIKFLRK--------------TVPERVEQIDDGKLRVFYK-------NT 279 (503)
T ss_pred HHHHHHHH--------------------HHhCCceeec--------------ccceeeeeccCCcEEEEee-------cc
Confidence 44444444 6666531100 0001122233333332111 01
Q ss_pred EEecCcEEccCEEEEcCCCCCCCCCc-cccccccc--CCCCCCCCCCCCCCCCCceEEEeeccccCc----cchhhHHHH
Q 035488 306 ELVNGQVLEIDSVVLATGYRSNVPSW-LKENEFFS--ENGIPKNPFPNGWKGKTGLYAVGFTKRGLS----GASLDAMSV 378 (408)
Q Consensus 306 ~~~~g~~~~~D~vi~atG~~~~~~~l-~~~~~~~~--~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~----~a~~~a~~~ 378 (408)
...++-+-++|.|+||+|+++.+..+ ++..|++. ..|.+.++ +...|+.|+|||+||+..+-. .|...|+.+
T Consensus 280 ~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlL 358 (503)
T KOG4716|consen 280 NTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGRLL 358 (503)
T ss_pred cccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhchHH
Confidence 11122356799999999999998666 66677765 46777777 578899999999999876543 566667766
Q ss_pred HHHHHH
Q 035488 379 ALDIAK 384 (408)
Q Consensus 379 a~~i~~ 384 (408)
|+.|-+
T Consensus 359 a~Rlf~ 364 (503)
T KOG4716|consen 359 ARRLFA 364 (503)
T ss_pred HHHHhc
Confidence 665543
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=7.5e-25 Score=228.38 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=180.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCcc-Cccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQF-DINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 97 (408)
.+||+||||||||++||..|++.|++|+|+|+.+.+||++.... . .....+...+.....+.+..+ ++++
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~------~~~g~~~~~~~~~~~~~l~~~~~v~v 233 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E------TIDGKPAADWAAATVAELTAMPEVTL 233 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c------ccCCccHHHHHHHHHHHHhcCCCcEE
Confidence 57999999999999999999999999999999999998764321 0 000011100000111111123 4778
Q ss_pred cccceeEEEEEcCCCCcEEEEEee--------cCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeecc---
Q 035488 98 RFNETVQSAKYDETFGFWRIKTIS--------SSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAG--- 166 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~--------~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~--- 166 (408)
+.+++|.++.... ....+.... +...+ ....+.||+|||||| +.+..|++||.+. .+ ++...
T Consensus 234 ~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~-~~~~i~a~~VILATG--a~~r~~pipG~~~-pg-V~~~~~~~ 306 (985)
T TIGR01372 234 LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRE-RLWRIRAKRVVLATG--AHERPLVFANNDR-PG-VMLAGAAR 306 (985)
T ss_pred EcCCEEEEEecCC--eEEEEEEeeeccccccCCcccc-ceEEEEcCEEEEcCC--CCCcCCCCCCCCC-CC-cEEchHHH
Confidence 8888888875422 111111100 00001 013689999999999 6677778888653 11 22211
Q ss_pred CCCC-CCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHH
Q 035488 167 DYKS-GASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLI 244 (408)
Q Consensus 167 ~~~~-~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (408)
.+.. ....++++|+|||+|.+|+|+|..|+..|. .|+++.+++ .+ ...
T Consensus 307 ~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~-------------~~~---------------- 356 (985)
T TIGR01372 307 TYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DV-------------SPE---------------- 356 (985)
T ss_pred HHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-ch-------------hHH----------------
Confidence 1111 123468999999999999999999999995 567776655 11 100
Q ss_pred HHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC----eEEEe----cCcEEc
Q 035488 245 LARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG----KVELV----NGQVLE 314 (408)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~----~g~~~~ 314 (408)
..+.+++.+|+++.+ +.++.++ .|.+. ++++++
T Consensus 357 -------------------------------------l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~ 399 (985)
T TIGR01372 357 -------------------------------------ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLE 399 (985)
T ss_pred -------------------------------------HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEE
Confidence 123344557777776 6677654 24444 456899
Q ss_pred cCEEEEcCCCCCCCCCcccccccc---cCC--CCCCCCCCCCCCCCCceEEEeeccccCc--cchhhHHHHHHHHHHHhh
Q 035488 315 IDSVVLATGYRSNVPSWLKENEFF---SEN--GIPKNPFPNGWKGKTGLYAVGFTKRGLS--GASLDAMSVALDIAKSWK 387 (408)
Q Consensus 315 ~D~vi~atG~~~~~~~l~~~~~~~---~~~--g~~~~~~~~~~t~~~~iya~Gd~~~~~~--~a~~~a~~~a~~i~~~~~ 387 (408)
||.|++++|+.|++ .++...+.. +.. ++ ...|+.|+||++||+++... .|..+|+.+|..|+..+.
T Consensus 400 ~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~------~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 400 ADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAF------LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCEEEEcCCcCchh-HHHHhcCCCeeeccccCce------ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998 776655431 211 11 11367899999999986543 788999999999987774
Q ss_pred H
Q 035488 388 E 388 (408)
Q Consensus 388 ~ 388 (408)
.
T Consensus 473 ~ 473 (985)
T TIGR01372 473 F 473 (985)
T ss_pred C
Confidence 3
No 77
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=1.7e-25 Score=213.04 Aligned_cols=285 Identities=20% Similarity=0.183 Sum_probs=203.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCccCCCCCCCeeeecCCcc-ccCCCCCCCCCCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ---GVPFIILERANCIASLWQNRTYDRLKLHLPKQF-CQLPNFPFPEDFPRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~---g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (408)
..+++|||.|.+|..+...+.+. -++++++...+.+. |....++.--.- ....+... .-.+|..+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~vl~~~~~~edi~l--~~~dwy~~~~ 73 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSVLAGEKTAEDISL--NRNDWYEENG 73 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccccCCCccHHHHhc--cchhhHHHcC
Confidence 34799999999999999999994 37999999988754 666554321100 01111111 1235667889
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC---
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG--- 171 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~--- 171 (408)
++++.+.+|+.|++.+ +. |++..+ .++.||.||+||| |.|++|++||..... ++....+.+.
T Consensus 74 i~L~~~~~v~~idr~~--k~--V~t~~g-------~~~~YDkLilATG--S~pfi~PiPG~~~~~--v~~~R~i~D~~am 138 (793)
T COG1251 74 ITLYTGEKVIQIDRAN--KV--VTTDAG-------RTVSYDKLIIATG--SYPFILPIPGSDLPG--VFVYRTIDDVEAM 138 (793)
T ss_pred cEEEcCCeeEEeccCc--ce--EEccCC-------cEeecceeEEecC--ccccccCCCCCCCCC--eeEEecHHHHHHH
Confidence 9999999999999887 55 777776 7999999999999 999999999987543 2222222111
Q ss_pred --CCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 035488 172 --ASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLI 249 (408)
Q Consensus 172 --~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 249 (408)
.....++-+|||+|..|+|+|..|...|-++++++-.+ +++-+... .-. -.++
T Consensus 139 ~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD-----~~a-------------------g~lL 193 (793)
T COG1251 139 LDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLD-----RTA-------------------GRLL 193 (793)
T ss_pred HHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhh-----hHH-------------------HHHH
Confidence 12245668999999999999999999999999998776 23221111 000 0111
Q ss_pred hhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeC----CeEEEecCcEEccCEEEEcCC
Q 035488 250 LGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSP----GKVELVNGQVLEIDSVVLATG 323 (408)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~----~~v~~~~g~~~~~D~vi~atG 323 (408)
...+++.+++++.+ ..++.+ .++.++||+.+++|.|++|+|
T Consensus 194 ---------------------------------~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 194 ---------------------------------RRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred ---------------------------------HHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 12233445555544 222221 358899999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCCCCCceEEEeecccc-------CccchhhHHHHHHHHHHHhhH
Q 035488 324 YRSNVPSWLKENEFFSENGIPKNPFPNGWKGKTGLYAVGFTKRG-------LSGASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~-------~~~a~~~a~~~a~~i~~~~~~ 388 (408)
++||. .+....++..++|.++.+ ..+|+.|+|||+|.|+.. .+.+..||+.+|.++.....+
T Consensus 241 IrPn~-ela~~aGlavnrGIvvnd--~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 241 IRPND-ELAKEAGLAVNRGIVVND--YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred ccccc-HhHHhcCcCcCCCeeecc--cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc
Confidence 99999 888888887777766655 799999999999998742 337788999999999887553
No 78
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=3.6e-25 Score=198.00 Aligned_cols=295 Identities=18% Similarity=0.172 Sum_probs=188.3
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcc-
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDIN- 96 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (408)
..++|||+|.|++|++++..|-..-++|++|++.+.+- +.++....+.+..+.+...-|.. ....+.+..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl-------FTPLLpS~~vGTve~rSIvEPIr--~i~r~k~~~~ 124 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL-------FTPLLPSTTVGTVELRSIVEPIR--AIARKKNGEV 124 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceE-------EeeccCCccccceeehhhhhhHH--HHhhccCCCc
Confidence 36899999999999999999999999999999998753 44444333334333332221110 011111112
Q ss_pred ccccceeEEEEEcCCCCcEEEEEee--cCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCccee-------------
Q 035488 97 PRFNETVQSAKYDETFGFWRIKTIS--SSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGN------------- 161 (408)
Q Consensus 97 ~~~~~~V~~i~~~~~~~~~~V~~~~--~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~------------- 161 (408)
..+..+.+.++.+. +. |+++. .++.. -+..+.|||||+|+| ..++.+.+||..++...
T Consensus 125 ~y~eAec~~iDp~~--k~--V~~~s~t~~~~~-~e~~i~YDyLViA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~ 197 (491)
T KOG2495|consen 125 KYLEAECTKIDPDN--KK--VHCRSLTADSSD-KEFVIGYDYLVIAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRK 197 (491)
T ss_pred eEEecccEeecccc--cE--EEEeeeccCCCc-ceeeecccEEEEecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHH
Confidence 23456667777665 55 44433 22211 136899999999999 77788889988753210
Q ss_pred eeeccC---C---CCCCCCCCCeEEEEccCCcHHHHHHHHhcc--------------CCccEEEEecCceeecccccCCc
Q 035488 162 VMHAGD---Y---KSGASYRGKRVLVVGCGNSGMEVSLDLCNH--------------NAKPSMVVRSSVHVLPREVLGKS 221 (408)
Q Consensus 162 ~~~~~~---~---~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------g~~V~~~~r~~~~~~p~~~~~~~ 221 (408)
+++..+ . .+.+..+--+++|||||++|+|+|.+|+.. -.+||++...+ .+++..+.
T Consensus 198 ~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d-~iL~mFdk--- 273 (491)
T KOG2495|consen 198 VIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD-HILNMFDK--- 273 (491)
T ss_pred HHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch-hHHHHHHH---
Confidence 011000 0 111122334799999999999999999854 12577777666 34443321
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccE
Q 035488 222 TFQLAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKK 299 (408)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~ 299 (408)
++... ..+.+.+.+|.+..+ ++.
T Consensus 274 ------------------rl~~y-------------------------------------ae~~f~~~~I~~~~~t~Vk~ 298 (491)
T KOG2495|consen 274 ------------------RLVEY-------------------------------------AENQFVRDGIDLDTGTMVKK 298 (491)
T ss_pred ------------------HHHHH-------------------------------------HHHHhhhccceeecccEEEe
Confidence 11111 123445668888887 788
Q ss_pred EeCCeEEEecC----cEEccCEEEEcCCCCCCCCCccccc-ccccCCC--CCCCCCCCCCCCCCceEEEeecccc--Cc-
Q 035488 300 FSPGKVELVNG----QVLEIDSVVLATGYRSNVPSWLKEN-EFFSENG--IPKNPFPNGWKGKTGLYAVGFTKRG--LS- 369 (408)
Q Consensus 300 ~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~l~~~~-~~~~~~g--~~~~~~~~~~t~~~~iya~Gd~~~~--~~- 369 (408)
+++..|..+++ +++++-+++|+||..|.. +...+ .-.+..| .+.+|+-++..+.+||||+|||+.. ..
T Consensus 299 V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~ 376 (491)
T KOG2495|consen 299 VTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKP 376 (491)
T ss_pred ecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCcc
Confidence 88888776655 689999999999999884 33333 1123333 5566656778899999999999832 11
Q ss_pred ---cchhhHHHHHHHHHHHhhHH
Q 035488 370 ---GASLDAMSVALDIAKSWKEE 389 (408)
Q Consensus 370 ---~a~~~a~~~a~~i~~~~~~~ 389 (408)
.|.+||..+|+++....+..
T Consensus 377 tAQVA~QqG~yLAk~fn~m~k~~ 399 (491)
T KOG2495|consen 377 TAQVAEQQGAYLAKNFNKMGKGG 399 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999998776543
No 79
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.92 E-value=4.2e-24 Score=203.92 Aligned_cols=319 Identities=19% Similarity=0.199 Sum_probs=169.3
Q ss_pred cCCcEEECCChHHHHHHHHHHH--cCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC----CCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKN--QGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE----DFPRVPHQ 92 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 92 (408)
.++|+||||||||++||..|++ .|++|+|||+.+.+||++++...+ +..... .+..+...
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP--------------~~~~~k~v~~~~~~~~~~ 91 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAP--------------DHPETKNVTNQFSRVATD 91 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCC--------------CcchhHHHHHHHHHHHHH
Confidence 5789999999999999999997 699999999999999876643211 111000 11111222
Q ss_pred cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC----
Q 035488 93 FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY---- 168 (408)
Q Consensus 93 ~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~---- 168 (408)
.+++++.+..| . .. +++.+ ....||+||+|||+. .+..+.+||.+.. .++...++
T Consensus 92 ~~v~~~~nv~v------g--~d--vtl~~--------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~--gV~~a~~fl~~~ 150 (491)
T PLN02852 92 DRVSFFGNVTL------G--RD--VSLSE--------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP--GVLSAREFVWWY 150 (491)
T ss_pred CCeEEEcCEEE------C--cc--ccHHH--------HhhhCCEEEEecCCC-CCCCCCCCCCCCC--CeEEHHHHHHHh
Confidence 34444444333 1 11 33332 234799999999953 2355678875421 22222111
Q ss_pred ------CCC--CCCCCCeEEEEccCCcHHHHHHHHhcc--------------------C-CccEEEEecCceeecccccC
Q 035488 169 ------KSG--ASYRGKRVLVVGCGNSGMEVSLDLCNH--------------------N-AKPSMVVRSSVHVLPREVLG 219 (408)
Q Consensus 169 ------~~~--~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~V~~~~r~~~~~~p~~~~~ 219 (408)
... ....+++|+|||+|++|+|+|..|.+. + .+|+++.|+...-.+.
T Consensus 151 ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~f---- 226 (491)
T PLN02852 151 NGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAAC---- 226 (491)
T ss_pred hcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCC----
Confidence 000 123589999999999999999998865 5 3699999988211111
Q ss_pred CchHHHHHHH--Hh---hc--------chHH----HHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhh
Q 035488 220 KSTFQLAVLM--MK---YF--------PLWL----VDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGA 282 (408)
Q Consensus 220 ~~~~~~~~~~--~~---~l--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (408)
+..++...+ .. .+ +... ..+..+....++.....+.. .....+...+.......|.
T Consensus 227 -t~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~-~~~~~~~~~v~~~f~~sP~----- 299 (491)
T PLN02852 227 -TAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGK-CAPSGGQRELHFVFFRNPT----- 299 (491)
T ss_pred -CHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcc-cccCCCCceEEEEccCCCe-----
Confidence 011111100 00 00 0000 00011111111111000000 0000000111111111111
Q ss_pred hhhhc--c--C---CeEEecCccEEe-----CCeEEEecC--cEEccCEEEEcCCCC--CCCCCc-c-ccccc-ccCCCC
Q 035488 283 LQKIR--S--G---DIKVVPGIKKFS-----PGKVELVNG--QVLEIDSVVLATGYR--SNVPSW-L-KENEF-FSENGI 343 (408)
Q Consensus 283 ~~~~~--~--~---~i~~~~~i~~~~-----~~~v~~~~g--~~~~~D~vi~atG~~--~~~~~l-~-~~~~~-~~~~g~ 343 (408)
+.+. + + ++++..+ ++. +......+| +.++||.||.++|++ |.. .+ + ...++ .+.+|+
T Consensus 300 -ei~~~~~~~~~v~~l~~~~~--~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~-~l~f~~~~gv~~n~~G~ 375 (491)
T PLN02852 300 -RFLDSGDGNGHVAGVKLERT--VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVD-GLPFDHKRGVVPNVHGR 375 (491)
T ss_pred -EEEccCCCCCcEEEEEEEEe--ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCC-CCccccCcCeeECCCce
Confidence 0000 0 0 1111111 110 000101123 368999999999998 443 32 2 22234 466788
Q ss_pred CCCCCCCCCCCCCceEEEeeccccCc----cchhhHHHHHHHHHHHhhH
Q 035488 344 PKNPFPNGWKGKTGLYAVGFTKRGLS----GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 344 ~~~~~~~~~t~~~~iya~Gd~~~~~~----~a~~~a~~~a~~i~~~~~~ 388 (408)
+.++ ....|+.|+|||+||+..++. .++.+|..++..|..++..
T Consensus 376 V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 376 VLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred EEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 8877 345689999999999987654 8899999999999999764
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.91 E-value=1.8e-24 Score=199.13 Aligned_cols=192 Identities=29% Similarity=0.410 Sum_probs=118.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCccCCCC-CCCeeeec--CCccccCCCCCCCCCCCCCCC---
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIASLWQNRT-YDRLKLHL--PKQFCQLPNFPFPEDFPRVPH--- 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~gg~w~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--- 91 (408)
++|+++||.||++|++|..|.+.+ .+++++|+.+.+. |+.++ .++..++. -+++....+...+-.|..|+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 579999999999999999999997 8999999988764 76543 23322222 233333332222223322222
Q ss_pred ---------------------------ccCccccccceeEEEEEcCCC--CcEEEEEeecCCCCcceEEEEeCEEEEeeC
Q 035488 92 ---------------------------QFDINPRFNETVQSAKYDETF--GFWRIKTISSSDSSFCEVEYICRWLVVATG 142 (408)
Q Consensus 92 ---------------------------~~~~~~~~~~~V~~i~~~~~~--~~~~V~~~~~~~~~~~~~~i~ad~vViAtG 142 (408)
+++-.++++++|++|+..... ..|+|++.+.++.. ..+.|+.||+|+|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~---~~~~ar~vVla~G 156 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDG---ETYRARNVVLATG 156 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-E---EEEEESEEEE---
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCe---eEEEeCeEEECcC
Confidence 666558999999999987643 25999997644433 7999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeeeccCCCCCC--CCCCCeEEEEccCCcHHHHHHHHhccCC--ccEEEEecCceeeccccc
Q 035488 143 ENAEKIEPEFEGLQHFEGNVMHAGDYKSGA--SYRGKRVLVVGCGNSGMEVSLDLCNHNA--KPSMVVRSSVHVLPREVL 218 (408)
Q Consensus 143 ~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~~~~~~p~~~~ 218 (408)
..|.+|...........++|++++.... ....++|+|||+|.||.|++..|.+.+. +|+|+.|++ .+.|.++.
T Consensus 157 --~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s 233 (341)
T PF13434_consen 157 --GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDS 233 (341)
T ss_dssp ---EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB----
T ss_pred --CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCccc
Confidence 7888886432111125789998886543 4578999999999999999999999865 899999999 67777665
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=4.4e-21 Score=171.66 Aligned_cols=315 Identities=25% Similarity=0.330 Sum_probs=181.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCccCCCC-CCCeeeecC--CccccCCCCCCCCCCCCCCC---
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIASLWQNRT-YDRLKLHLP--KQFCQLPNFPFPEDFPRVPH--- 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~gg~w~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 91 (408)
..|++.||-||+.|++|+.|.+++ .+++++|+++.+. |+..+ .++..++.+ +++....+...+-.|..|+.
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 679999999999999999999986 7899999999874 65432 111111111 12111111111111111111
Q ss_pred --------------------------ccCccccccceeEEEEEcCCCCcEE--EEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 92 --------------------------QFDINPRFNETVQSAKYDETFGFWR--IKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 92 --------------------------~~~~~~~~~~~V~~i~~~~~~~~~~--V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
.+--.++++++|+.|.......... +.+.++ ..++|+.||+++|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~-------~~y~ar~lVlg~G- 154 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANG-------TVYRARNLVLGVG- 154 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCC-------cEEEeeeEEEccC-
Confidence 2225679999999774333222322 222222 5899999999999
Q ss_pred CCCCCCCCC-CCCCCcceeeeeccCCCC-CCCCCCCe-EEEEccCCcHHHHHHHHhcc----CCccEEEEecCceeeccc
Q 035488 144 NAEKIEPEF-EGLQHFEGNVMHAGDYKS-GASYRGKR-VLVVGCGNSGMEVSLDLCNH----NAKPSMVVRSSVHVLPRE 216 (408)
Q Consensus 144 ~~~~~~p~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~-v~VvG~G~~a~e~a~~l~~~----g~~V~~~~r~~~~~~p~~ 216 (408)
.+|.+|+. ..+. ...++|++++.. ..+...++ |+|||+|.||.|+...|... ..++.|+.|+. .++|.+
T Consensus 155 -~~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~d 230 (436)
T COG3486 155 -TQPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPMD 230 (436)
T ss_pred -CCcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCccc
Confidence 88998853 2222 247899998874 33444554 99999999999999999863 44689999999 677888
Q ss_pred ccCCchHHHHHHHHhh---cchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChh-hhhhhc--cCC
Q 035488 217 VLGKSTFQLAVLMMKY---FPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIG-ALQKIR--SGD 290 (408)
Q Consensus 217 ~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 290 (408)
+.....--+.....++ ++...++++..... +.++ |+.... .....+. +.+.+. ...
T Consensus 231 ~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~-~~Yk-----gI~~~t------------i~~Iy~~lY~~~l~~~~~~ 292 (436)
T COG3486 231 YSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR-LLYK-----GISFDT------------IEEIYDLLYEQSLGGRKPD 292 (436)
T ss_pred cchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC-cccc-----ccCHHH------------HHHHHHHHHHHHhcCCCCC
Confidence 7621111111111111 34444444443322 1110 000000 0000000 111111 224
Q ss_pred eEEecC--ccEEeCCe---EEE-------ecCcEEccCEEEEcCCCCCCCCCcccccc---cccCCCCCCCCCCC--CCC
Q 035488 291 IKVVPG--IKKFSPGK---VEL-------VNGQVLEIDSVVLATGYRSNVPSWLKENE---FFSENGIPKNPFPN--GWK 353 (408)
Q Consensus 291 i~~~~~--i~~~~~~~---v~~-------~~g~~~~~D~vi~atG~~~~~~~l~~~~~---~~~~~g~~~~~~~~--~~t 353 (408)
+.+..+ +..++..+ +.+ .+.+++++|.||+|||++...+.|++.+. ..+++|..+++.+. .+.
T Consensus 293 v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~ 372 (436)
T COG3486 293 VRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD 372 (436)
T ss_pred eeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecC
Confidence 555554 55554432 322 23357899999999999988877877763 36777777655322 232
Q ss_pred --CCCceEEEeecc
Q 035488 354 --GKTGLYAVGFTK 365 (408)
Q Consensus 354 --~~~~iya~Gd~~ 365 (408)
....||+.|..-
T Consensus 373 ~~~~~~ifvqn~e~ 386 (436)
T COG3486 373 GPGKGRIFVQNAEL 386 (436)
T ss_pred CCCcceEEEecccc
Confidence 234799999753
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=2e-21 Score=190.18 Aligned_cols=309 Identities=20% Similarity=0.222 Sum_probs=180.0
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
+.++|+|||.|||||+||..|.+.|+.|+|+||.+.+||+..+. .+.+.+ .+.+.+ ...+++.+.|+++
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-ipnmkl--dk~vv~--------rrv~ll~~egi~f 1852 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-IPNMKL--DKFVVQ--------RRVDLLEQEGIRF 1852 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-CCccch--hHHHHH--------HHHHHHHhhCceE
Confidence 36899999999999999999999999999999999999976542 112111 111111 1112233445555
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC--------C
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY--------K 169 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~--------~ 169 (408)
..++++ +.. |.+.. -.-..|++|+|+|+ ..|...++||-+.- + +....++ .
T Consensus 1853 ~tn~ei---------gk~-vs~d~--------l~~~~daiv~a~gs-t~prdlpv~grd~k-g-v~fame~l~~ntk~ll 1911 (2142)
T KOG0399|consen 1853 VTNTEI---------GKH-VSLDE--------LKKENDAIVLATGS-TTPRDLPVPGRDLK-G-VHFAMEFLEKNTKSLL 1911 (2142)
T ss_pred Eeeccc---------ccc-ccHHH--------HhhccCeEEEEeCC-CCCcCCCCCCcccc-c-cHHHHHHHHHhHHhhh
Confidence 555544 111 22221 34578999999996 46666678876531 1 1111111 1
Q ss_pred C------CCCCCCCeEEEEccCCcHHHHHHHHhccCCc-cEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHH
Q 035488 170 S------GASYRGKRVLVVGCGNSGMEVSLDLCNHNAK-PSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKIL 242 (408)
Q Consensus 170 ~------~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (408)
+ .....+|+|+|||||.+|-++...-.+.|.+ |.-+ .++|.+...+. ..+-+.+|=.....+.=+
T Consensus 1912 d~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~-----ellp~pp~~ra---~~npwpqwprvfrvdygh 1983 (2142)
T KOG0399|consen 1912 DSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF-----ELLPQPPPERA---PDNPWPQWPRVFRVDYGH 1983 (2142)
T ss_pred ccccccceeccCCCeEEEECCCCccccccccchhhccceecce-----eecCCCCcccC---CCCCCccCceEEEeecch
Confidence 1 1234789999999999999999888888764 3333 23333222111 111111110000011111
Q ss_pred HHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhcc--CCeEEecC--ccEEe--CCeEEEe----cCcE
Q 035488 243 LILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRS--GDIKVVPG--IKKFS--PGKVELV----NGQV 312 (408)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~--i~~~~--~~~v~~~----~g~~ 312 (408)
.+....+-.+...|.+. ..+.+.. ++++=..- |..-. .+.+++. +.+.
T Consensus 1984 ~e~~~~~g~dpr~y~vl----------------------tk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~ 2041 (2142)
T KOG0399|consen 1984 AEAKEHYGSDPRTYSVL----------------------TKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEI 2041 (2142)
T ss_pred HHHHHHhCCCcceeeee----------------------eeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCccee
Confidence 12222222223233221 0111111 11111100 11111 1123222 2356
Q ss_pred EccCEEEEcCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHHHHHHHhhH
Q 035488 313 LEIDSVVLATGYRSNVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVALDIAKSWKE 388 (408)
Q Consensus 313 ~~~D~vi~atG~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~~i~~~~~~ 388 (408)
++||+||+|.||........+.+++ .|+++.+......+.++++++||+|||..+.. .|..+||.+|..+...+.+
T Consensus 2042 ~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2042 IEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDELMGG 2121 (2142)
T ss_pred eecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHHHhCC
Confidence 8999999999999776577777777 67788888776778899999999999998765 7899999999999875543
No 83
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=174.29 Aligned_cols=276 Identities=20% Similarity=0.208 Sum_probs=176.9
Q ss_pred cEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccccc
Q 035488 22 PVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPRF 99 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
++|||+|++|+++|..+++.. .+++++........ ...+.................... +..+.++.++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~ 72 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY-----YRCPLSLYVGGGIASLEDLRYPPR---FNRATGIDVRT 72 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCC-----CCCccchHHhcccCCHHHhcccch---hHHhhCCEEee
Confidence 689999999999999999864 68888887765431 011111111111111111111101 11345788889
Q ss_pred cceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCC-----CC
Q 035488 100 NETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGA-----SY 174 (408)
Q Consensus 100 ~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~-----~~ 174 (408)
+++|..++... +. |.+.+ .++.||++++||| ..+..++ +.. .....+.....+.. ..
T Consensus 73 ~~~v~~id~~~--~~--v~~~~--------g~~~yd~LvlatG--a~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~ 134 (415)
T COG0446 73 GTEVTSIDPEN--KV--VLLDD--------GEIEYDYLVLATG--ARPRPPP--ISD--WEGVVTLRLREDAEALKGGAE 134 (415)
T ss_pred CCEEEEecCCC--CE--EEECC--------CcccccEEEEcCC--CcccCCC--ccc--cCceEEECCHHHHHHHHHHHh
Confidence 99999998776 44 66666 3789999999999 5555554 111 11122222111111 11
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccc-cCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhh
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREV-LGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNV 253 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 253 (408)
..++++|+|+|..|+++|..+.+.|.+|++++..+ ++.+... . ++...
T Consensus 135 ~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~-----~~~~~------------------------- 183 (415)
T COG0446 135 PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDP-----EVAEE------------------------- 183 (415)
T ss_pred ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhH-----HHHHH-------------------------
Confidence 25899999999999999999999999999999888 3433221 1 11111
Q ss_pred hhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCCe-------EEEecCcEEccCEEEEcCCC
Q 035488 254 EKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPGK-------VELVNGQVLEIDSVVLATGY 324 (408)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~-------v~~~~g~~~~~D~vi~atG~ 324 (408)
+.+.++..+|+++.+ +.+++... +...++..+++|++++++|.
T Consensus 184 ----------------------------~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 184 ----------------------------LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred ----------------------------HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 123344456776655 66776542 46778889999999999999
Q ss_pred CCCCCCcccccc--cccCCCCCCCCCCCCCCC-CCceEEEeeccccCc-------------cchhhHHHHHHHHHH
Q 035488 325 RSNVPSWLKENE--FFSENGIPKNPFPNGWKG-KTGLYAVGFTKRGLS-------------GASLDAMSVALDIAK 384 (408)
Q Consensus 325 ~~~~~~l~~~~~--~~~~~g~~~~~~~~~~t~-~~~iya~Gd~~~~~~-------------~a~~~a~~~a~~i~~ 384 (408)
+|+. .+....+ ....+|++.++ ...+++ .+++|++||++.... .+..+++.++.++..
T Consensus 236 ~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 236 RPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred cccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 9996 6666654 56677888888 466665 999999999764321 445556666666654
No 84
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-19 Score=161.86 Aligned_cols=293 Identities=17% Similarity=0.207 Sum_probs=180.8
Q ss_pred CCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC--------ccCCCCCCCeee--------ecCCccccCCC-C
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIAS--------LWQNRTYDRLKL--------HLPKQFCQLPN-F 80 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg--------~w~~~~~~~~~~--------~~~~~~~~~~~-~ 80 (408)
...+|||+|.+-.+++...... +.+|++|...+.++- +|.+........ ....-+++.+. +
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 4589999999999887776655 578999988876652 454321111000 00111111111 1
Q ss_pred CCCCCCCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC-CCCCCCcc
Q 035488 81 PFPEDFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE-FEGLQHFE 159 (408)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~-~~g~~~~~ 159 (408)
..+++++. ..+-|+-+..+-+|..|+... +. |+++++ .+|.||.++|||| .+|...+ +.....-.
T Consensus 259 vspeDLp~-~~nGGvAvl~G~kvvkid~~d--~~--V~LnDG-------~~I~YdkcLIATG--~~Pk~l~~~~~A~~ev 324 (659)
T KOG1346|consen 259 VSPEDLPK-AVNGGVAVLRGRKVVKIDEED--KK--VILNDG-------TTIGYDKCLIATG--VRPKKLQVFEEASEEV 324 (659)
T ss_pred eChhHCcc-cccCceEEEeccceEEeeccc--Ce--EEecCC-------cEeehhheeeecC--cCcccchhhhhcCHHh
Confidence 12222221 224567778888999998665 55 888887 7999999999999 5555432 32221111
Q ss_pred eeeeeccCCCCC------CCCCCCeEEEEccCCcHHHHHHHHhcc----CCccEEEEecCceeecccccCCchHHHHHHH
Q 035488 160 GNVMHAGDYKSG------ASYRGKRVLVVGCGNSGMEVSLDLCNH----NAKPSMVVRSSVHVLPREVLGKSTFQLAVLM 229 (408)
Q Consensus 160 ~~~~~~~~~~~~------~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~ 229 (408)
.+-++...+... .....++|.|||+|..|.|+|..|.+. |.+|+-+.... + .....+
T Consensus 325 k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek-------~------nm~kiL 391 (659)
T KOG1346|consen 325 KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK-------Y------NMEKIL 391 (659)
T ss_pred hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc-------C------Chhhhh
Confidence 111222222211 112458999999999999999999864 55666443322 1 223333
Q ss_pred HhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCe-
Q 035488 230 MKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGK- 304 (408)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~- 304 (408)
..|+.. ..++.+++++|.+.++ |.++. ..+
T Consensus 392 Peyls~---------------------------------------------wt~ekir~~GV~V~pna~v~sv~~~~~nl 426 (659)
T KOG1346|consen 392 PEYLSQ---------------------------------------------WTIEKIRKGGVDVRPNAKVESVRKCCKNL 426 (659)
T ss_pred HHHHHH---------------------------------------------HHHHHHHhcCceeccchhhhhhhhhccce
Confidence 333311 1356677788888877 43332 222
Q ss_pred -EEEecCcEEccCEEEEcCCCCCCCCCcccccccc-cC-CCCCCCCCCCCCCCCCceEEEeeccccC------------c
Q 035488 305 -VELVNGQVLEIDSVVLATGYRSNVPSWLKENEFF-SE-NGIPKNPFPNGWKGKTGLYAVGFTKRGL------------S 369 (408)
Q Consensus 305 -v~~~~g~~~~~D~vi~atG~~~~~~~l~~~~~~~-~~-~g~~~~~~~~~~t~~~~iya~Gd~~~~~------------~ 369 (408)
+.+.||.++..|+|++|+|-.||. .+.+.+++. |. -|...+|.++ .-..|||++||++... -
T Consensus 427 ~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvnaeL--~ar~NvwvAGdaacF~D~~LGrRRVehhd 503 (659)
T KOG1346|consen 427 VLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNAEL--KARENVWVAGDAACFEDGVLGRRRVEHHD 503 (659)
T ss_pred EEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeehee--ecccceeeecchhhhhcccccceeccccc
Confidence 677899999999999999999999 888888773 33 3444445222 3446999999976431 1
Q ss_pred cchhhHHHHHHHHHHHhh
Q 035488 370 GASLDAMSVALDIAKSWK 387 (408)
Q Consensus 370 ~a~~~a~~~a~~i~~~~~ 387 (408)
.|...||.++.||.+.-+
T Consensus 504 havvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 504 HAVVSGRLAGENMTGAAK 521 (659)
T ss_pred cceeeceecccccccccC
Confidence 567788888888876543
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=9.3e-20 Score=172.42 Aligned_cols=289 Identities=22% Similarity=0.269 Sum_probs=171.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC----CCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF----PRVPHQFD 94 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 94 (408)
.++|+||||||||+++|..|++.|+.|+++|+.+.+||...+ .+|.+..+.+. .+++.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y---------------GIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY---------------GIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe---------------cCchhhccchHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999986543 33333333222 23444566
Q ss_pred ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCC------
Q 035488 95 INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDY------ 168 (408)
Q Consensus 95 ~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~------ 168 (408)
++++.++++ +. .++... -.-.+|+|++|+|. ..|....+||.+.- .+....++
T Consensus 188 v~~~~~~~v---------G~-~it~~~--------L~~e~Dav~l~~G~-~~~~~l~i~g~d~~--gv~~A~dfL~~~~~ 246 (457)
T COG0493 188 VEFKLNVRV---------GR-DITLEE--------LLKEYDAVFLATGA-GKPRPLDIPGEDAK--GVAFALDFLTRLNK 246 (457)
T ss_pred eEEEEcceE---------CC-cCCHHH--------HHHhhCEEEEeccc-cCCCCCCCCCcCCC--cchHHHHHHHHHHH
Confidence 777776665 21 133332 23356999999997 56666678876521 11111111
Q ss_pred ------C--CCCCCCCCeEEEEccCCcHHHHHHHHhccCC-ccEEEEecCce--eecccccCCchHHHHHHHHhhcchHH
Q 035488 169 ------K--SGASYRGKRVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSSVH--VLPREVLGKSTFQLAVLMMKYFPLWL 237 (408)
Q Consensus 169 ------~--~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~~~--~~p~~~~~~~~~~~~~~~~~~l~~~~ 237 (408)
. ......+++|+|||+|.+++|++.....+|. +|+.+.+.... ..|.+.. ...++
T Consensus 247 ~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~-~~~~~------------- 312 (457)
T COG0493 247 EVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTW-AAQLE------------- 312 (457)
T ss_pred HHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCccccc-chhhh-------------
Confidence 0 1122245999999999999999999999998 67777633311 0000000 00000
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhh--ccCCeEEecC--ccEE---e----CCeEE
Q 035488 238 VDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKI--RSGDIKVVPG--IKKF---S----PGKVE 306 (408)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--i~~~---~----~~~v~ 306 (408)
.....+.++.+ .+...-.+.+ ++++|.-... +..- + ...+.
T Consensus 313 ------------~~~a~eeg~~~----------------~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~ 364 (457)
T COG0493 313 ------------VRSAGEEGVER----------------LPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVG 364 (457)
T ss_pred ------------hhhhhhcCCcc----------------cccCCceeEeecCCCcEeeeecccccccCcccccccccCcc
Confidence 00111112110 0000001111 1122221110 0000 0 01121
Q ss_pred E-ecCcEEccCEEEEcCCCCCCCCCcc-ccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccccCc---cchhhHHHHHH
Q 035488 307 L-VNGQVLEIDSVVLATGYRSNVPSWL-KENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKRGLS---GASLDAMSVAL 380 (408)
Q Consensus 307 ~-~~g~~~~~D~vi~atG~~~~~~~l~-~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~~~~---~a~~~a~~~a~ 380 (408)
. .+...+++|+|+.++|+.++...+. ...++ .+.+|.+.++....+|+.|++||.||+..+.. .|..+|+.+|+
T Consensus 365 v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak 444 (457)
T COG0493 365 VIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAK 444 (457)
T ss_pred ccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHH
Confidence 2 2224689999999999999874432 22234 56789888885444899999999999988543 88999999999
Q ss_pred HHHHH
Q 035488 381 DIAKS 385 (408)
Q Consensus 381 ~i~~~ 385 (408)
.|...
T Consensus 445 ~i~~~ 449 (457)
T COG0493 445 AIDKE 449 (457)
T ss_pred hhhHH
Confidence 99844
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.77 E-value=6.2e-18 Score=149.48 Aligned_cols=145 Identities=21% Similarity=0.248 Sum_probs=91.4
Q ss_pred cccCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC----CCCCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE----DFPRVP 90 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 90 (408)
...++|+|||+||||+.+|.+|.++ +++|.|+|+.+-+.|+-++... |+.+-.. .|...+
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA--------------PDHpEvKnvintFt~~a 83 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA--------------PDHPEVKNVINTFTKTA 83 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC--------------CCCcchhhHHHHHHHHh
Confidence 3456899999999999999999995 5899999999998887665421 2222111 111222
Q ss_pred CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCC-
Q 035488 91 HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYK- 169 (408)
Q Consensus 91 ~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~- 169 (408)
++....+.-|.+| - .. |.+.. -+-.||+||+|.|+ ..+....|||.+. ..++....+.
T Consensus 84 E~~rfsf~gNv~v-----G---~d--vsl~e--------L~~~ydavvLaYGa-~~dR~L~IPGe~l--~~V~Sarefv~ 142 (468)
T KOG1800|consen 84 EHERFSFFGNVKV-----G---RD--VSLKE--------LTDNYDAVVLAYGA-DGDRRLDIPGEEL--SGVISAREFVG 142 (468)
T ss_pred hccceEEEeccee-----c---cc--ccHHH--------HhhcccEEEEEecC-CCCcccCCCCccc--ccceehhhhhh
Confidence 2222222222222 0 00 22222 34579999999997 4556678888752 1222221111
Q ss_pred ----------CCCCCCCCeEEEEccCCcHHHHHHHHh
Q 035488 170 ----------SGASYRGKRVLVVGCGNSGMEVSLDLC 196 (408)
Q Consensus 170 ----------~~~~~~~~~v~VvG~G~~a~e~a~~l~ 196 (408)
...++...+|+|||.|++|+++|+.|.
T Consensus 143 Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 143 WYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred hccCCCcccccCcccccceEEEEccCchhhhhhhhhh
Confidence 123456889999999999999999987
No 87
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.76 E-value=6.2e-18 Score=169.56 Aligned_cols=319 Identities=13% Similarity=0.135 Sum_probs=162.5
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC--C-----CCCCCeeee-cCCccccCCCCCCCCCCCC-
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ--N-----RTYDRLKLH-LPKQFCQLPNFPFPEDFPR- 88 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 88 (408)
..++|+||||||||++||.+|++.|++|+++|+.+..|+... . +.|..+... .+........+-.+..++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~ 461 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKN 461 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHH
Confidence 468999999999999999999999999999999764433110 0 001111100 0000000100001101110
Q ss_pred CCC------ccCccccc--cceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcce
Q 035488 89 VPH------QFDINPRF--NETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEG 160 (408)
Q Consensus 89 ~~~------~~~~~~~~--~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~ 160 (408)
..+ ..+..+.+ +.++ . .. ++.++- ....||+|+||||+ ..|..+++||.+. .
T Consensus 462 ~l~~i~~il~~g~~v~~~~gv~l-----G---~d--it~edl-------~~~gyDAV~IATGA-~kpr~L~IPGeda--~ 521 (1028)
T PRK06567 462 NLDILRLILERNNNFKYYDGVAL-----D---FN--ITKEQA-------FDLGFDHIAFCIGA-GQPKVLDIENFEA--K 521 (1028)
T ss_pred HHHHHHHHHhcCCceEEECCeEE-----C---cc--CCHHHH-------hhcCCCEEEEeCCC-CCCCCCCCCCccC--C
Confidence 000 11111111 2111 0 00 111110 24579999999995 2677888898763 2
Q ss_pred eeeeccCCCCC-------------CCCCCCeEEEEccCCcHHHHHHHHhc---cCCccEEEEecCceeecccccCCchHH
Q 035488 161 NVMHAGDYKSG-------------ASYRGKRVLVVGCGNSGMEVSLDLCN---HNAKPSMVVRSSVHVLPREVLGKSTFQ 224 (408)
Q Consensus 161 ~~~~~~~~~~~-------------~~~~~~~v~VvG~G~~a~e~a~~l~~---~g~~V~~~~r~~~~~~p~~~~~~~~~~ 224 (408)
.++...++... ....+++|+|||||++|+|+|..... .+.++++....+ ..+|..+. +
T Consensus 522 GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d~-----e 595 (1028)
T PRK06567 522 GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEEDK-----E 595 (1028)
T ss_pred CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhcccccH-----H
Confidence 23333322111 01136789999999999999996654 344555554444 44455554 5
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCC--Cccc--ChhhhhhhccCCeEEecC--cc
Q 035488 225 LAVLMMKYFPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGK--TPVL--DIGALQKIRSGDIKVVPG--IK 298 (408)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~i~~~~~--i~ 298 (408)
.+..+...+......+......... .. .+...+...... .|.. +....+...+.||+.... ..
T Consensus 596 ia~~f~~h~r~~g~~~~~~~v~~l~----~~-------~G~VtIvYRr~~~empA~~~~~eEv~~A~eEGV~f~~~~~P~ 664 (1028)
T PRK06567 596 IAEEFIAHAKLFKEAKNNEELRKVF----NK-------LGGATVYYRGRLQDSPAYKLNHEELIYALALGVDFKENMQPL 664 (1028)
T ss_pred HHHHHHHHHHhhcchhccchhhhhh----cc-------CCceEEEecCChhhCCCCCCCHHHHHHHHHcCcEEEecCCcE
Confidence 5555555542111011010000000 00 000111111111 1221 223344445567776655 44
Q ss_pred EEeCC---e---EEEe------------------------------cCcEEccCEEEEcCCCCCCCCCcccccccccCCC
Q 035488 299 KFSPG---K---VELV------------------------------NGQVLEIDSVVLATGYRSNVPSWLKENEFFSENG 342 (408)
Q Consensus 299 ~~~~~---~---v~~~------------------------------~g~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~g 342 (408)
++..+ . +.+. ....++||.||.|+|..||+ .+.
T Consensus 665 ~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~-~~~---------- 733 (1028)
T PRK06567 665 RINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNT-QFD---------- 733 (1028)
T ss_pred EEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcc-ccc----------
Confidence 44211 1 1111 11468999999999999998 332
Q ss_pred CCCCCCCCCCCCCCceEEEeeccccCccchhhHHHHHHHHHHHhhHHhHh
Q 035488 343 IPKNPFPNGWKGKTGLYAVGFTKRGLSGASLDAMSVALDIAKSWKEETKQ 392 (408)
Q Consensus 343 ~~~~~~~~~~t~~~~iya~Gd~~~~~~~a~~~a~~~a~~i~~~~~~~~~~ 392 (408)
..+ ....++.+++|+- ....|+.+|+.++.+|.+.+...+..
T Consensus 734 --~~~-~s~~~d~~~~f~G-----tvv~A~as~k~~~~~i~~~l~~~~~~ 775 (1028)
T PRK06567 734 --EDK-YSYFGDCNPKYSG-----SVVKALASSKEGYDAINKKLINNNPS 775 (1028)
T ss_pred --ccc-cccccCCCCcccc-----HHHHHHHHHHhHHHHHHHHHhhCCCC
Confidence 111 2344556666665 33478999999999999888765444
No 88
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.74 E-value=1.2e-16 Score=150.27 Aligned_cols=43 Identities=28% Similarity=0.239 Sum_probs=38.4
Q ss_pred cCCcEEECCChHHHHHHHHHH-HcCCCEEEEecCCCCCCccCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLK-NQGVPFIILERANCIASLWQNR 61 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~-~~g~~v~lie~~~~~gg~w~~~ 61 (408)
.++|+||||||||++||.+|+ +.|++|+|+|+.+.++|++++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 568999999999999999865 6799999999999999988754
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.71 E-value=2.9e-16 Score=143.07 Aligned_cols=39 Identities=21% Similarity=0.454 Sum_probs=37.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
.+.++|||||+||++||+.|++.|++|+|+||++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 468999999999999999999999999999999999995
No 90
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=6.4e-14 Score=129.61 Aligned_cols=350 Identities=21% Similarity=0.244 Sum_probs=177.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCC-ccCCCCCCCeeeecCCccccCCCCCCCCCC--------
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG---VPFIILERANCIAS-LWQNRTYDRLKLHLPKQFCQLPNFPFPEDF-------- 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g---~~v~lie~~~~~gg-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 86 (408)
+++|+|||+|++|+..|.+|.+.- ..+.|+|+.+.+|. +-++..-+....+.+...++....+.+.+|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 468999999999999999999973 24999999998875 333222222223333222211100001111
Q ss_pred -------------CCCCC-----------------ccC-ccc-cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEe
Q 035488 87 -------------PRVPH-----------------QFD-INP-RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYIC 134 (408)
Q Consensus 87 -------------~~~~~-----------------~~~-~~~-~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~a 134 (408)
..|+- +.. ..+ ...++++++........+.++..++ ....|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~~~a 153 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PSEIA 153 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ceeee
Confidence 11111 111 112 3455677777664336666777775 57899
Q ss_pred CEEEEeeCCCCCCCCCCCCCCCCcce-eeeeccCC-CCCC--CCCCCeEEEEccCCcHHHHHHHHhccCC--ccEEEEec
Q 035488 135 RWLVVATGENAEKIEPEFEGLQHFEG-NVMHAGDY-KSGA--SYRGKRVLVVGCGNSGMEVSLDLCNHNA--KPSMVVRS 208 (408)
Q Consensus 135 d~vViAtG~~~~~~~p~~~g~~~~~~-~~~~~~~~-~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~ 208 (408)
|-+|+|||. .+..+..- ..++.+ ..+....+ .+.. .....+|+|+|+|.+-++....|...|+ +||.+.|+
T Consensus 154 d~~Vlatgh--~~~~~~~~-~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRr 230 (474)
T COG4529 154 DIIVLATGH--SAPPADPA-ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRR 230 (474)
T ss_pred eEEEEeccC--CCCCcchh-hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEecc
Confidence 999999994 33222221 111111 11111111 1111 1245569999999999999999999886 69999998
Q ss_pred CceeecccccCCchHH----------HHHHHHhhcchHH-------------HHHHHHHHHHH--HhhhhhhcCCCCCCC
Q 035488 209 SVHVLPREVLGKSTFQ----------LAVLMMKYFPLWL-------------VDKILLILARL--ILGNVEKYGLKRPPT 263 (408)
Q Consensus 209 ~~~~~p~~~~~~~~~~----------~~~~~~~~l~~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~~~ 263 (408)
. +.|....+..... -...+..++.... .|.+......+ .+...++.. ...+.
T Consensus 231 G--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~r-f~rH~ 307 (474)
T COG4529 231 G--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRR-FERHL 307 (474)
T ss_pred c--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHH-HHHhc
Confidence 8 4443322211111 1111112211000 01110000000 010111110 01111
Q ss_pred CCcccccCCCCCcccChhhhhhhccCCeEEecC-ccEEe---CC-eEEEe----c-CcEEccCEEEEcCCCCCCCCC---
Q 035488 264 GPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG-IKKFS---PG-KVELV----N-GQVLEIDSVVLATGYRSNVPS--- 330 (408)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~---~~-~v~~~----~-g~~~~~D~vi~atG~~~~~~~--- 330 (408)
.+.+....+.-.|.......+.+.++-++++.+ +..++ ++ .+.+. + .+.+++|.||-|+|..+.. .
T Consensus 308 ~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~-~~~s 386 (474)
T COG4529 308 RPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDN-SLSS 386 (474)
T ss_pred ccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCC-Cccc
Confidence 112221222223444555556677777888877 44443 22 13332 1 2468999999999998875 2
Q ss_pred --ccccc---ccc--c--CCCCCCCCCCCC-----CCCCCceEEEeeccccCc-------cchhhHHHHHHHHH
Q 035488 331 --WLKEN---EFF--S--ENGIPKNPFPNG-----WKGKTGLYAVGFTKRGLS-------GASLDAMSVALDIA 383 (408)
Q Consensus 331 --l~~~~---~~~--~--~~g~~~~~~~~~-----~t~~~~iya~Gd~~~~~~-------~a~~~a~~~a~~i~ 383 (408)
++... |+. | ..|. .++.+.. .+..+++|++|..+.+.. .-..|+..+|..|.
T Consensus 387 ~~~L~sl~~~Gl~rpd~~~lGl-~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 387 DPFLRSLGENGLARPDPPGLGL-DVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred hHHHHHHHhCCccccCCCCCce-eeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 22221 221 1 1232 2221222 235679999999887643 33456666666665
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.61 E-value=4.2e-18 Score=146.92 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=73.1
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccccc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPRFN 100 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
||+||||||||++||..|++.+++++|+|+.+..+.... ..+.................... .+.+.+.+.+++++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG-CIPSPLLVEIAPHRHEFLPARLF-KLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHG-HHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc-ccccccccccccccccccccccc-ccccccccceEEEeec
Confidence 599999999999999999999999999988763321000 00000000000000000000000 1111112457777788
Q ss_pred ceeEEEEEcCCCCc-----EEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCC
Q 035488 101 ETVQSAKYDETFGF-----WRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGL 155 (408)
Q Consensus 101 ~~V~~i~~~~~~~~-----~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~ 155 (408)
++|.+++... +. +.+..... +. ..++.||+||+||| +.|..|.+||.
T Consensus 79 ~~v~~i~~~~--~~~~~~~~~~~~~~~-~~---~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 79 AKVVSIDPES--KRVVCPAVTIQVVET-GD---GREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp HTEEEEEEST--TEEEETCEEEEEEET-TT---EEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccc--cccccCcccceeecc-CC---ceEecCCeeeecCc--cccceeecCCC
Confidence 9999998776 43 22222111 11 27899999999999 77787888876
No 92
>PRK09897 hypothetical protein; Provisional
Probab=99.59 E-value=6.8e-14 Score=135.71 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=103.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCC-C-ccCCCC-CCCeeeec-----C---Cc---cccCC----
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIA-S-LWQNRT-YDRLKLHL-----P---KQ---FCQLP---- 78 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~g-g-~w~~~~-~~~~~~~~-----~---~~---~~~~~---- 78 (408)
|++|+||||||+|+++|.+|.+.+ ++|+|||++..+| | .|.... ...+.++. + .. |....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999999874 5899999988887 3 343211 11111110 0 00 00000
Q ss_pred ------------CCCC-C-CCCCCCCC-----------ccC--ccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEE
Q 035488 79 ------------NFPF-P-EDFPRVPH-----------QFD--INPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVE 131 (408)
Q Consensus 79 ------------~~~~-~-~~~~~~~~-----------~~~--~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 131 (408)
...+ + ..+-+|+. ..+ +.++.+++|++++..+ +.|.|++.++. ..
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~ 152 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS 152 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE
Confidence 0000 0 00111111 223 4566778999998776 66777765421 47
Q ss_pred EEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCCCCCCCCeEEEEccCCcHHHHHHHHhccC------------
Q 035488 132 YICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSGASYRGKRVLVVGCGNSGMEVSLDLCNHN------------ 199 (408)
Q Consensus 132 i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g------------ 199 (408)
+.+|+||+|||.. .|..+ ++...+ +-..+.........+.+|+|+|.|.++++++..|...|
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y---i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~ 226 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY---FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVV 226 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc---cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcce
Confidence 8999999999952 22211 111111 11111111111234789999999999999999987552
Q ss_pred -------C--ccEEEEecCc
Q 035488 200 -------A--KPSMVVRSSV 210 (408)
Q Consensus 200 -------~--~V~~~~r~~~ 210 (408)
. +++++.|+..
T Consensus 227 l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 227 FHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred eeecCCCCCceEEEEeCCCC
Confidence 2 6788888773
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=120.93 Aligned_cols=304 Identities=17% Similarity=0.174 Sum_probs=147.8
Q ss_pred cEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc-c
Q 035488 22 PVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP-R 98 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (408)
.+|||||.||.+||..|+.+ ..+++|+...+.+-+.-+ |..+. +.... +...+ .-...++.++ +
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn---~~~i~----~ylek---fdv~e---q~~~elg~~f~~ 68 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN---YQKIG----QYLEK---FDVKE---QNCHELGPDFRR 68 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh---HHHHH----HHHHh---cCccc---cchhhhcccHHH
Confidence 68999999999999999987 468999988764322111 10000 00000 00000 0000111111 1
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcceeeeeccCCCCC-----CC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFEGNVMHAGDYKSG-----AS 173 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~ 173 (408)
+-..|..++. ....++++++ .++.|++|++|+| .+|.... .+.+. .++-..+-... ..
T Consensus 69 ~~~~v~~~~s----~ehci~t~~g-------~~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl 131 (334)
T KOG2755|consen 69 FLNDVVTWDS----SEHCIHTQNG-------EKLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKL 131 (334)
T ss_pred HHHhhhhhcc----ccceEEecCC-------ceeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHH
Confidence 1112433333 3344888886 6899999999999 6666432 22221 22332222211 22
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcc--hHHHHHHHHHHHHH-Hh
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFP--LWLVDKILLILARL-IL 250 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~-~~ 250 (408)
...|.|.|+|.|-+++|++.++... +|+|.+..+ ++...+..+. ...++...|. .....--.+.++.. ..
T Consensus 132 ~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdpG----aaef~~i~l~a~~s~~~iaiKh~q~iea~ 204 (334)
T KOG2755|consen 132 VKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDPG----AAEFYDINLRADRSTRIIAIKHFQYIEAF 204 (334)
T ss_pred hhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCcc----HHHHhHhhhhcccccchhhhhhhhhhhhc
Confidence 4689999999999999999998765 789999887 5544333211 1111111110 00000001111111 00
Q ss_pred hhhhhcCCCCCCCCCcccccCCCCC-cccChhhhhhhccCCeEEecC--ccEEeCC-eEEEecCcEEccCEEEEcCCCCC
Q 035488 251 GNVEKYGLKRPPTGPIELKNNEGKT-PVLDIGALQKIRSGDIKVVPG--IKKFSPG-KVELVNGQVLEIDSVVLATGYRS 326 (408)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~--i~~~~~~-~v~~~~g~~~~~D~vi~atG~~~ 326 (408)
.+.++.++ -+.+++.+=...+-+. ...+......+...-+.+... ..++... ...-.+ ..+.+|.++.+||..|
T Consensus 205 pk~~~n~v-g~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~-~qlt~d~ivSatgvtp 282 (334)
T KOG2755|consen 205 PKCEENNV-GPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMAD-NQLTCDFIVSATGVTP 282 (334)
T ss_pred CcccccCc-ccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccccc-ceeeeeEEEeccccCc
Confidence 00011110 1112221111100000 000011111111111111110 0011000 000111 2467999999999999
Q ss_pred CCCCccccccc-ccCCCCCCCCCCCCCCCCCceEEEeeccc
Q 035488 327 NVPSWLKENEF-FSENGIPKNPFPNGWKGKTGLYAVGFTKR 366 (408)
Q Consensus 327 ~~~~l~~~~~~-~~~~g~~~~~~~~~~t~~~~iya~Gd~~~ 366 (408)
|.. +.-...+ ..++|.+.++ +.+.|+.|++||+||++.
T Consensus 283 n~e-~~~~~~lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 283 NSE-WAMNKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred Cce-EEecChhhhccccCeeeh-hhccccccceeeecceec
Confidence 995 5444323 5667878877 578899999999999775
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.51 E-value=1.7e-13 Score=118.82 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=160.8
Q ss_pred cccCCcEEECCChHHHHHHHHHHHc-CC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC-CCCCCCCcc
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQ-GV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE-DFPRVPHQF 93 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~-g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 93 (408)
..-+.|+|||||.+|++.|..+.+. |. +|.|+|..++ +.|++...-...++.++....-+. ++. + .
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~-------HyYQPgfTLvGgGl~~l~~srr~~a~li--P--~ 105 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED-------HYYQPGFTLVGGGLKSLDSSRRKQASLI--P--K 105 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh-------cccCcceEEeccchhhhhhccCcccccc--c--C
Confidence 3456899999999999999988776 54 8999999874 346555544444433332211100 000 0 0
Q ss_pred CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCCcc-e-eeeeccC--CC
Q 035488 94 DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQHFE-G-NVMHAGD--YK 169 (408)
Q Consensus 94 ~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~~~-~-~~~~~~~--~~ 169 (408)
+.. ....+|+..+++. .. |.++++ .+|+|||+|||+| -.-..-.|+|+.+.- . .++.... +.
T Consensus 106 ~a~-wi~ekv~~f~P~~--N~--v~t~gg-------~eIsYdylviA~G--iql~y~~IkGl~Eal~tP~VcSnYSpkyv 171 (446)
T KOG3851|consen 106 GAT-WIKEKVKEFNPDK--NT--VVTRGG-------EEISYDYLVIAMG--IQLDYGKIKGLVEALDTPGVCSNYSPKYV 171 (446)
T ss_pred CcH-HHHHHHHhcCCCc--Ce--EEccCC-------cEEeeeeEeeeee--ceeccchhcChHhhccCCCcccccChHHH
Confidence 222 2336777777665 33 777776 6999999999999 444444566654310 0 1111100 00
Q ss_pred CC-----C---------CCCCCeEEEEccCCcHHHHHHHHhcc-CC--ccEEEEecCceeecccccCCchHHHHHHHHhh
Q 035488 170 SG-----A---------SYRGKRVLVVGCGNSGMEVSLDLCNH-NA--KPSMVVRSSVHVLPREVLGKSTFQLAVLMMKY 232 (408)
Q Consensus 170 ~~-----~---------~~~~~~v~VvG~G~~a~e~a~~l~~~-g~--~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~ 232 (408)
+. . .++.--+-.-|+-.-.+-++....+. |. ++.++.-.. +|.-. .+
T Consensus 172 dk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts---l~~iF------gV------- 235 (446)
T KOG3851|consen 172 DKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS---LPTIF------GV------- 235 (446)
T ss_pred HHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC---cccee------cH-------
Confidence 00 0 01122233334444444455444432 32 344433222 01000 00
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEec--CccEEeCCe--EEEe
Q 035488 233 FPLWLVDKILLILARLILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVP--GIKKFSPGK--VELV 308 (408)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~i~~~~~~~--v~~~ 308 (408)
++. .+.+.+.+++.+|++.. +..++..+. .+++
T Consensus 236 ------k~Y-------------------------------------~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe 272 (446)
T KOG3851|consen 236 ------KHY-------------------------------------ADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE 272 (446)
T ss_pred ------HHH-------------------------------------HHHHHHHHHhcceEeeeccceEEEeccchhhHHH
Confidence 000 11122333344454433 234443321 1121
Q ss_pred ---c-C--cEEccCEEEEcCCCCCCCCCcccccccccCCCCCCCCCCCCC-CCCCceEEEeeccccCc-----cchhhHH
Q 035488 309 ---N-G--QVLEIDSVVLATGYRSNVPSWLKENEFFSENGIPKNPFPNGW-KGKTGLYAVGFTKRGLS-----GASLDAM 376 (408)
Q Consensus 309 ---~-g--~~~~~D~vi~atG~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-t~~~~iya~Gd~~~~~~-----~a~~~a~ 376 (408)
+ | ++++++++-+.....+. .++..+.+.|..||+.+|....+ +..||||++|||.+.+. .+..|+.
T Consensus 273 ~L~kPG~t~ei~yslLHv~Ppms~p--e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~ 350 (446)
T KOG3851|consen 273 NLDKPGVTEEIEYSLLHVTPPMSTP--EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSP 350 (446)
T ss_pred hcCCCCceeEEeeeeeeccCCCCCh--hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCc
Confidence 1 3 47889999988777766 67777778899999999976655 68999999999998765 2335566
Q ss_pred HHHHHHHHHhhHHhHh
Q 035488 377 SVALDIAKSWKEETKQ 392 (408)
Q Consensus 377 ~~a~~i~~~~~~~~~~ 392 (408)
.+-.++...+++..+-
T Consensus 351 vv~~nl~~~m~g~~pt 366 (446)
T KOG3851|consen 351 VVDKNLTQVMQGKRPT 366 (446)
T ss_pred hhhhhHHHHhcCCCcc
Confidence 7778888877765443
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.48 E-value=1.9e-14 Score=129.74 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=82.7
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-----------CCCCCCCeeeecC---Cccc----cCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW-----------QNRTYDRLKLHLP---KQFC----QLP 78 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w-----------~~~~~~~~~~~~~---~~~~----~~~ 78 (408)
|..+||+||||||||+.||..++++|.+|+|||+.+.+|-.. +...++.+..+.| +.++ .+.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 346799999999999999999999999999999999887421 1111122222222 1100 000
Q ss_pred -----------CC-----CCCCCCCCC-------------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcce
Q 035488 79 -----------NF-----PFPEDFPRV-------------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCE 129 (408)
Q Consensus 79 -----------~~-----~~~~~~~~~-------------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 129 (408)
.. ....-|+.. +++.+++++.+++|.+++.++ ..|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCC-------
Confidence 00 000011111 118899999999999999887 7788988885
Q ss_pred EEEEeCEEEEeeCCCCCC
Q 035488 130 VEYICRWLVVATGENAEK 147 (408)
Q Consensus 130 ~~i~ad~vViAtG~~~~~ 147 (408)
.+++||.+|+|||..+.|
T Consensus 152 ~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 152 ETVKCDSLILATGGKSWP 169 (408)
T ss_pred CEEEccEEEEecCCcCCC
Confidence 489999999999976555
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.27 E-value=5.8e-12 Score=118.71 Aligned_cols=120 Identities=26% Similarity=0.418 Sum_probs=62.5
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc------C----C--CCCCCeeee---cCCccc----cCC--
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW------Q----N--RTYDRLKLH---LPKQFC----QLP-- 78 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w------~----~--~~~~~~~~~---~~~~~~----~~~-- 78 (408)
|||+||||||||+.||+.|++.|.+|+|+|+++.+|... + . ..+...... .+..+. .++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 689999999999999999999999999999998886311 0 0 000000000 000000 000
Q ss_pred ---------CCCCC--CC---CCCC-------------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEE
Q 035488 79 ---------NFPFP--ED---FPRV-------------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVE 131 (408)
Q Consensus 79 ---------~~~~~--~~---~~~~-------------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 131 (408)
..+.. .+ ++.. +.+.+++++++++|.++...++ +.|.|.+.+. ..
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~-------~~ 152 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNG-------GE 152 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTT-------EE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCc-------cc
Confidence 00000 00 0000 0177899999999999998762 4588888432 79
Q ss_pred EEeCEEEEeeCCCCCC
Q 035488 132 YICRWLVVATGENAEK 147 (408)
Q Consensus 132 i~ad~vViAtG~~~~~ 147 (408)
+.+|.||+|||..+.|
T Consensus 153 ~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 153 YEADAVILATGGKSYP 168 (409)
T ss_dssp EEESEEEE----SSSG
T ss_pred ccCCEEEEecCCCCcc
Confidence 9999999999965544
No 97
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.13 E-value=2.6e-10 Score=107.96 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=31.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+|||+|++|+++|..|++.|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4699999999999999999999999999999864
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.12 E-value=9e-11 Score=107.42 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=71.5
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCC----------C---------eeeecCCc-cccCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYD----------R---------LKLHLPKQ-FCQLPN 79 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~----------~---------~~~~~~~~-~~~~~~ 79 (408)
+||+|||||++|+++|+.|++.|++|+|+|+...++..+...... . ........ .....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP- 79 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec-
Confidence 589999999999999999999999999999997654322210000 0 00000000 00000
Q ss_pred CCCC-----------CCCCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 80 FPFP-----------EDFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 80 ~~~~-----------~~~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
.+.. ..+.+...+.+++++++++|+++...+ +.+.+.+.++ . .++++|+||+|+|.++
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~---~---~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGG---E---GTVTAKIVIGADGSRS 148 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCc---c---EEEEeCEEEECCCcch
Confidence 0000 000011115678889999999998776 4444554432 1 5899999999999754
No 99
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.11 E-value=1.1e-10 Score=103.80 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=73.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccCCCC-CCCeeeecC-Ccc---ccCCCCCCCCC-------
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-LWQNRT-YDRLKLHLP-KQF---CQLPNFPFPED------- 85 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-~w~~~~-~~~~~~~~~-~~~---~~~~~~~~~~~------- 85 (408)
.+||+||||||||++||+.|++.|++|+|+|++..+|| .|.... ++......+ ..+ ...++......
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 57999999999999999999999999999999988876 443211 111110000 000 01111100000
Q ss_pred -----CCCCCCccCccccccceeEEEEEcCCCCcEEEEEeec----CCCCcceEEEEeCEEEEeeCCC
Q 035488 86 -----FPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISS----SDSSFCEVEYICRWLVVATGEN 144 (408)
Q Consensus 86 -----~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~----~~~~~~~~~i~ad~vViAtG~~ 144 (408)
+.+...+.+++++++++|+++..+++.....+.+... .+...+...+++++||+|||.+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 0011126788999999999987654312333333211 0000012689999999999953
No 100
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.09 E-value=4.7e-10 Score=92.95 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=74.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccCCC-CCCCeeeecCCc-cc---cCCCCCCCCCC-----C
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-LWQNR-TYDRLKLHLPKQ-FC---QLPNFPFPEDF-----P 87 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-~w~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~-----~ 87 (408)
..||+||||||+||+||++|++.|++|+|||++-.+|| .|--. .++.+....+.. +. .++..+..+.+ .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 35999999999999999999999999999999998887 88543 244444433321 11 12222211110 0
Q ss_pred CCC-------CccCccccccceeEEEEEcCCCCcEEEEEeecCCCC----cceEEEEeCEEEEeeCC
Q 035488 88 RVP-------HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSS----FCEVEYICRWLVVATGE 143 (408)
Q Consensus 88 ~~~-------~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~----~~~~~i~ad~vViAtG~ 143 (408)
++. -+.+.+++....|..+--.++.+.--|.++-+.... -+...+++++||-|||.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 000 066777777788887765543211112211100000 01257899999999994
No 101
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.08 E-value=5.9e-10 Score=106.19 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC--CC--------CCCee----eecCCccccCCC----
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN--RT--------YDRLK----LHLPKQFCQLPN---- 79 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~--~~--------~~~~~----~~~~~~~~~~~~---- 79 (408)
.++||+||||||||.+||+.|++.|++|+|+|+...+|..-.. .. .+... ..........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 4689999999999999999999999999999998776641110 00 00000 000000000000
Q ss_pred CCCC---------CCCCC----CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 80 FPFP---------EDFPR----VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 80 ~~~~---------~~~~~----~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
...+ ..+.+ ...+.+.+++.+++|..+..++ ....+....++ .++++++||.|+|..+
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~--~~~~~~~~~~~------~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED--DGVVVGVRAGD------DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC--CcEEEEEEcCC------EEEEcCEEEECCCcch
Confidence 0000 00111 1116788899999999999877 33334444321 5899999999999533
No 102
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.07 E-value=9.4e-11 Score=100.00 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=77.8
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccc------------------------
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFC------------------------ 75 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~------------------------ 75 (408)
.+|+|||+|++|++||..|+..|+.|+|+||...+||.......+.-..+.-..++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 47999999999999999999999999999999988884432222221111111111
Q ss_pred ----cCCCC---CCCCCCCCCCC-----------ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEE
Q 035488 76 ----QLPNF---PFPEDFPRVPH-----------QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWL 137 (408)
Q Consensus 76 ----~~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~v 137 (408)
.+... +..++.+ |.. ..++++.++++|+.+.+.+ +.|+++++++. ....+|.|
T Consensus 82 ~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~--~~W~l~~~~g~------~~~~~d~v 152 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLATDLTVVLETRVTEVARTD--NDWTLHTDDGT------RHTQFDDV 152 (331)
T ss_pred ccccccccCCCCCCCCCCc-cccCcchHHHHHHHhccchhhhhhhhhhheecC--CeeEEEecCCC------cccccceE
Confidence 11100 1111111 222 4467889999999999886 89999997753 57899999
Q ss_pred EEeeC
Q 035488 138 VVATG 142 (408)
Q Consensus 138 ViAtG 142 (408)
|||.-
T Consensus 153 vla~P 157 (331)
T COG3380 153 VLAIP 157 (331)
T ss_pred EEecC
Confidence 99976
No 103
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.06 E-value=5e-10 Score=91.91 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=72.4
Q ss_pred EEECCChHHHHHHHHHHHc-----CCCEEEEecCCCC-CCccCCCCCCCeeeecCCccccCC-CCC---CC-----CC--
Q 035488 23 VIVGAGPSGLAVAAGLKNQ-----GVPFIILERANCI-ASLWQNRTYDRLKLHLPKQFCQLP-NFP---FP-----ED-- 85 (408)
Q Consensus 23 vIIG~G~aGl~~A~~l~~~-----g~~v~lie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~~-~~~---~~-----~~-- 85 (408)
+|||||++|++++.+|.++ ..+|+|||+.+.. |+.|.....+...++.+...+... +.+ +. ..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999998 3699999996553 237765434444555544333221 100 00 00
Q ss_pred ------CCCCCC-------------------ccCccc-cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEE
Q 035488 86 ------FPRVPH-------------------QFDINP-RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVV 139 (408)
Q Consensus 86 ------~~~~~~-------------------~~~~~~-~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vVi 139 (408)
...|+- ..++++ ....+|++++..+ +.|.|++.++ ..+.||+||+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g-------~~~~~d~VvL 151 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADG-------QSIRADAVVL 151 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCC-------CEEEeCEEEE
Confidence 001111 223444 3467999999887 5677888776 5789999999
Q ss_pred eeCC
Q 035488 140 ATGE 143 (408)
Q Consensus 140 AtG~ 143 (408)
|||.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9993
No 104
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.05 E-value=6.6e-10 Score=98.37 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=74.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccCCCC-CCCeeeecC-Ccc---ccCCCCCCCCCC------
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-LWQNRT-YDRLKLHLP-KQF---CQLPNFPFPEDF------ 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-~w~~~~-~~~~~~~~~-~~~---~~~~~~~~~~~~------ 86 (408)
.+||+||||||+|++||+.|+++|++|+|+||+..+|+ .|.... ++......+ ..+ ...+.......+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 67999999999999999999999999999999998865 664321 111111000 001 011111111100
Q ss_pred ------CCCCCccCccccccceeEEEEEcCCC-CcEEEEEeecC----CCCcceEEEEeCEEEEeeCC
Q 035488 87 ------PRVPHQFDINPRFNETVQSAKYDETF-GFWRIKTISSS----DSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 87 ------~~~~~~~~~~~~~~~~V~~i~~~~~~-~~~~V~~~~~~----~~~~~~~~i~ad~vViAtG~ 143 (408)
.....+.++++++++.|.++...++. +..-|.+.... +...+...++++.||.|||.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 00111668889999999998876531 12223332210 00001268999999999994
No 105
>PRK08013 oxidoreductase; Provisional
Probab=99.05 E-value=1.3e-09 Score=104.10 Aligned_cols=36 Identities=39% Similarity=0.513 Sum_probs=33.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 347999999999999999999999999999999865
No 106
>PRK09126 hypothetical protein; Provisional
Probab=99.01 E-value=2.6e-09 Score=101.96 Aligned_cols=36 Identities=36% Similarity=0.615 Sum_probs=33.3
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..+||+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 357899999999999999999999999999999864
No 107
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.00 E-value=2.8e-09 Score=101.42 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecC-C----CCCCccC-------------CCCCCCeeeecCCccccCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERA-N----CIASLWQ-------------NRTYDRLKLHLPKQFCQLPNFP 81 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~-~----~~gg~w~-------------~~~~~~~~~~~~~~~~~~~~~~ 81 (408)
+||+||||||||+++|+.|++.|++|+|+|+. + +.++... ...+.......+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 58999999999999999999999999999997 2 1111100 0011112222221100000000
Q ss_pred CCCCCC---------CC----CCccCccccccceeEEEEEcCCCCcEEEEEeec----CCCCcceEEEEeCEEEEeeCCC
Q 035488 82 FPEDFP---------RV----PHQFDINPRFNETVQSAKYDETFGFWRIKTISS----SDSSFCEVEYICRWLVVATGEN 144 (408)
Q Consensus 82 ~~~~~~---------~~----~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~----~~~~~~~~~i~ad~vViAtG~~ 144 (408)
....+. ++ +.+.+++++. ++|+++...+ +.+.|++.++ .+.+ .++++|.||.|+|.+
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~---~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDR--DGVTLTYRTPKKGAGGEK---GSVEADVVIGADGAN 154 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcC--CeEEEEEEeccccCCCcc---eEEEeCEEEECCCCC
Confidence 000110 00 1145777754 4688887665 5666777642 1112 579999999999976
Q ss_pred CC
Q 035488 145 AE 146 (408)
Q Consensus 145 ~~ 146 (408)
+.
T Consensus 155 S~ 156 (388)
T TIGR02023 155 SP 156 (388)
T ss_pred cH
Confidence 53
No 108
>PRK06834 hypothetical protein; Provisional
Probab=99.00 E-value=2.4e-09 Score=104.51 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-------CccCC--------CCCCCeeee---cC-Ccc---
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA-------SLWQN--------RTYDRLKLH---LP-KQF--- 74 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g-------g~w~~--------~~~~~~~~~---~~-~~~--- 74 (408)
|..+||+||||||+|+++|..|++.|++|+|||+.+.+. +++.. ..++.+.-. .. ..+
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 345799999999999999999999999999999986431 11110 000000000 00 000
Q ss_pred -ccCCCCC----CCCCCC---------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEe
Q 035488 75 -CQLPNFP----FPEDFP---------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVA 140 (408)
Q Consensus 75 -~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViA 140 (408)
....... +...+. +.+.+.+++++++++|++++.++ +.+.|++.++ .++++|+||.|
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g-------~~i~a~~vVgA 151 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDG-------RTLRAQYLVGC 151 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCC-------CEEEeCEEEEe
Confidence 0000000 000000 11125578899999999998876 5555666443 47999999999
Q ss_pred eCCCCC
Q 035488 141 TGENAE 146 (408)
Q Consensus 141 tG~~~~ 146 (408)
+|.++.
T Consensus 152 DG~~S~ 157 (488)
T PRK06834 152 DGGRSL 157 (488)
T ss_pred cCCCCC
Confidence 997663
No 109
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.99 E-value=3.4e-09 Score=102.02 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=73.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----C-----------------ccCCC-----CCCCeeeecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA----S-----------------LWQNR-----TYDRLKLHLPK 72 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g----g-----------------~w~~~-----~~~~~~~~~~~ 72 (408)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+. | .|..- ...........
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 5799999999999999999999999999999987542 1 11110 00000000000
Q ss_pred --ccccCCCCCCCCCCCCC--------------CCc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeC
Q 035488 73 --QFCQLPNFPFPEDFPRV--------------PHQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICR 135 (408)
Q Consensus 73 --~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad 135 (408)
....+...........+ +.+ -+++++++++|++++.++ +.+.|++.++++ . .++++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~-~---~~i~ad 171 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIEGK-Q---QTLQSK 171 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccCCc-c---eEEeee
Confidence 00000000000000000 112 267888899999998766 556677764321 1 479999
Q ss_pred EEEEeeCCCCCC
Q 035488 136 WLVVATGENAEK 147 (408)
Q Consensus 136 ~vViAtG~~~~~ 147 (408)
.||.|+|.++..
T Consensus 172 lvIgADG~~S~v 183 (415)
T PRK07364 172 LVVAADGARSPI 183 (415)
T ss_pred EEEEeCCCCchh
Confidence 999999976643
No 110
>PRK06184 hypothetical protein; Provisional
Probab=98.99 E-value=4.2e-09 Score=103.70 Aligned_cols=123 Identities=22% Similarity=0.346 Sum_probs=74.2
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC------c-------------cCC-----CCCCCeeeecCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS------L-------------WQN-----RTYDRLKLHLPK 72 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg------~-------------w~~-----~~~~~~~~~~~~ 72 (408)
|..++|+||||||+|+++|..|+++|++|+|||+.+.+.. + |.. ..+.........
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 3457999999999999999999999999999999865421 1 100 001111110000
Q ss_pred c-ccc--C-------CCCCCCC--CCC---------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEE
Q 035488 73 Q-FCQ--L-------PNFPFPE--DFP---------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVE 131 (408)
Q Consensus 73 ~-~~~--~-------~~~~~~~--~~~---------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 131 (408)
. +.. . ...+++. .+. +.+.+.+++++++++|++++.++ +.+++++.+..+ . .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~~-~---~~ 154 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPAG-E---ET 154 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCCC-e---EE
Confidence 0 000 0 0000000 000 01114578899999999998776 555566643221 1 58
Q ss_pred EEeCEEEEeeCCCC
Q 035488 132 YICRWLVVATGENA 145 (408)
Q Consensus 132 i~ad~vViAtG~~~ 145 (408)
+++|+||.|+|.++
T Consensus 155 i~a~~vVgADG~~S 168 (502)
T PRK06184 155 VRARYLVGADGGRS 168 (502)
T ss_pred EEeCEEEECCCCch
Confidence 99999999999876
No 111
>PRK06847 hypothetical protein; Provisional
Probab=98.99 E-value=5.1e-09 Score=99.38 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=73.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------cCC--------C----------CCCCeeeecCCc-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL------WQN--------R----------TYDRLKLHLPKQ- 73 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~------w~~--------~----------~~~~~~~~~~~~- 73 (408)
+++|+||||||+|+++|..|++.|++|+|+|+.+.+... +.. . ............
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 458999999999999999999999999999998653210 000 0 001111110000
Q ss_pred -cccCCCCCC-CCCCCC---------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCE
Q 035488 74 -FCQLPNFPF-PEDFPR---------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRW 136 (408)
Q Consensus 74 -~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~ 136 (408)
+...+.... ...++. .+.+.+++++++++|++++... +.+.|++.++ .++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~~~ad~ 154 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDG-------TTGRYDL 154 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCC-------CEEEcCE
Confidence 001100000 000110 0114578899999999998766 5566777654 5789999
Q ss_pred EEEeeCCCCCC
Q 035488 137 LVVATGENAEK 147 (408)
Q Consensus 137 vViAtG~~~~~ 147 (408)
||+|+|.++..
T Consensus 155 vI~AdG~~s~~ 165 (375)
T PRK06847 155 VVGADGLYSKV 165 (375)
T ss_pred EEECcCCCcch
Confidence 99999976644
No 112
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.99 E-value=5.1e-09 Score=100.70 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=34.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||+||||||||++||..|++.|++|+|+||.+.++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 4799999999999999999999999999999987654
No 113
>PRK05868 hypothetical protein; Validated
Probab=98.98 E-value=5.9e-09 Score=98.48 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=73.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------ccCC-----CCCCCeeeecCCcc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-------------------LWQN-----RTYDRLKLHLPKQF 74 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~ 74 (408)
|++|+|||||++|+++|..|++.|++|+|||+.+.+.. +|.. ..........+...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 45899999999999999999999999999999875431 0100 00111111111100
Q ss_pred --ccCCC-CCCCCCC--C----------CC---CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCE
Q 035488 75 --CQLPN-FPFPEDF--P----------RV---PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRW 136 (408)
Q Consensus 75 --~~~~~-~~~~~~~--~----------~~---~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~ 136 (408)
..... ......+ . +. ....+++++++++|++++.+. +..+|++.++ .++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~~~adl 151 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG--DSVRVTFERA-------AAREFDL 151 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC--CeEEEEECCC-------CeEEeCE
Confidence 00000 0000000 0 00 003467789999999998665 5666777665 5789999
Q ss_pred EEEeeCCCCCC
Q 035488 137 LVVATGENAEK 147 (408)
Q Consensus 137 vViAtG~~~~~ 147 (408)
||.|.|..|.-
T Consensus 152 vIgADG~~S~v 162 (372)
T PRK05868 152 VIGADGLHSNV 162 (372)
T ss_pred EEECCCCCchH
Confidence 99999986643
No 114
>PRK08244 hypothetical protein; Provisional
Probab=98.96 E-value=4.4e-09 Score=103.37 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------ccCC-----CCCCCeeeecCCccc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-------------------LWQN-----RTYDRLKLHLPKQFC 75 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~~ 75 (408)
+||+||||||+|+++|..|++.|++|+|||+.+.+.. .|.. ...............
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 6899999999999999999999999999999864321 1100 000000000000000
Q ss_pred cCCCCCCCCCC----C---------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeC
Q 035488 76 QLPNFPFPEDF----P---------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATG 142 (408)
Q Consensus 76 ~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG 142 (408)
.+........+ . +.+.+.+++++++++|+++...+ +..++++.+.++ . .++++|+||.|+|
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~g-~---~~i~a~~vVgADG 156 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPDG-L---RTLTSSYVVGADG 156 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCCc-c---EEEEeCEEEECCC
Confidence 00000000000 0 00115578899999999998766 455566654322 2 5799999999999
Q ss_pred CCC
Q 035488 143 ENA 145 (408)
Q Consensus 143 ~~~ 145 (408)
.++
T Consensus 157 ~~S 159 (493)
T PRK08244 157 AGS 159 (493)
T ss_pred CCh
Confidence 866
No 115
>PLN02463 lycopene beta cyclase
Probab=98.96 E-value=1.6e-09 Score=103.84 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=70.3
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-----CccCCC------------CCCCeeeecCCccccCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA-----SLWQNR------------TYDRLKLHLPKQFCQLPN 79 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g-----g~w~~~------------~~~~~~~~~~~~~~~~~~ 79 (408)
...+||+||||||||+++|..|++.|++|+|+|+.+... +.|... .+................
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 346899999999999999999999999999999976421 222100 000000000000000000
Q ss_pred CCCC----CC----CCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 80 FPFP----ED----FPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 80 ~~~~----~~----~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
.++. .. +.+.+.+.+++++ .++|++++..+ +.+.|++.++ .++++|.||.|+|..+
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG-------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDG-------VKIQASLVLDATGFSR 169 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCC-------CEEEcCEEEECcCCCc
Confidence 0000 00 0000114466664 47899998766 5567877764 5899999999999654
No 116
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.96 E-value=6.9e-10 Score=92.60 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=67.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccCC-CCCCCeeeecCCcc-c---cCCCCCCCCCCCCCCC-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS-LWQN-RTYDRLKLHLPKQF-C---QLPNFPFPEDFPRVPH- 91 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg-~w~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~- 91 (408)
.+||+||||||+|++||+.|++.|++|++||++..+|| .|.. ..+..+..+.+... . .++..+..+.+ |..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~--~v~d 94 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGY--YVAD 94 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEE--EES-
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeE--EEEc
Confidence 57999999999999999999999999999999998886 7754 34555555443221 1 11111111100 000
Q ss_pred -------------ccCccccccceeEEEEEcCCCCcEEEEEeec----CCCCcceEEEEeCEEEEeeCC
Q 035488 92 -------------QFDINPRFNETVQSAKYDETFGFWRIKTISS----SDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 92 -------------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~----~~~~~~~~~i~ad~vViAtG~ 143 (408)
+.+++++..+.|+.+-..++.+.--|.++.. .+-.-++..+++++||-|||.
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 6677888888888877555212212222211 000002368999999999994
No 117
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.95 E-value=9.4e-09 Score=102.02 Aligned_cols=125 Identities=24% Similarity=0.345 Sum_probs=76.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC-------------------C-----CCCCCeeeecCCc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ-------------------N-----RTYDRLKLHLPKQ 73 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~-------------------~-----~~~~~~~~~~~~~ 73 (408)
..+||+||||||+|+++|..|++.|++|+|||+.+.+....+ . .............
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 457999999999999999999999999999999975432110 0 0011111110000
Q ss_pred --cccCCC-----CCCC--CCCCC-----C----CCc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEe
Q 035488 74 --FCQLPN-----FPFP--EDFPR-----V----PHQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYIC 134 (408)
Q Consensus 74 --~~~~~~-----~~~~--~~~~~-----~----~~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~a 134 (408)
...++. ..++ ..+.+ . +.+ .+++++++++|++++.++ +.++|++.+.++.. .++++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~~G~~---~~i~a 163 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDADGQR---ETVRA 163 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcCCCCE---EEEEE
Confidence 001110 0011 00000 0 002 378899999999999877 55667776433322 68999
Q ss_pred CEEEEeeCCCCCC
Q 035488 135 RWLVVATGENAEK 147 (408)
Q Consensus 135 d~vViAtG~~~~~ 147 (408)
|+||.|+|.++..
T Consensus 164 d~vVgADG~~S~v 176 (538)
T PRK06183 164 RYVVGCDGANSFV 176 (538)
T ss_pred EEEEecCCCchhH
Confidence 9999999986643
No 118
>PRK10015 oxidoreductase; Provisional
Probab=98.95 E-value=7.3e-09 Score=99.53 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=34.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||+||||||||++||+.|++.|++|+||||.+.++
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4799999999999999999999999999999987654
No 119
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.95 E-value=4.6e-10 Score=107.83 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=34.1
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCC---CCee--------------eecCC-ccc-------
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTY---DRLK--------------LHLPK-QFC------- 75 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~---~~~~--------------~~~~~-~~~------- 75 (408)
|||||||||+|++||+.+++.|.+|+|||+.+.+||....... .... ..... .-+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 6999999999999999999999999999999999985442211 1100 00000 000
Q ss_pred -----cCCCCCCCCCCCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 76 -----QLPNFPFPEDFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
.+....+..-+.+++.+.++++++++.|.++..++. +...|++.+..+ . .++.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~~g-~---~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETKSG-R---KEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-c---cccccccccccccc
Confidence 000011111233445578999999999999987753 455566665433 3 69999999999994
No 120
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.94 E-value=6.1e-09 Score=99.41 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=72.3
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----C--------------------ccCCC------CCCCee
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA----S--------------------LWQNR------TYDRLK 67 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g----g--------------------~w~~~------~~~~~~ 67 (408)
..+||+||||||+|+++|..|+++|++|+|||+.+.+. + .|..- .+....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 35799999999999999999999999999999976321 0 11100 000000
Q ss_pred eecCC--ccccCCCCCCCCC-C-------------CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEE
Q 035488 68 LHLPK--QFCQLPNFPFPED-F-------------PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVE 131 (408)
Q Consensus 68 ~~~~~--~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 131 (408)
..... ....+........ + .+.+.+.+++++++++|+++..+. +.++|++.++ .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~ 155 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDG-------RR 155 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCC-------CE
Confidence 00000 0000000000000 0 000114578889999999998766 5566766553 47
Q ss_pred EEeCEEEEeeCCCC
Q 035488 132 YICRWLVVATGENA 145 (408)
Q Consensus 132 i~ad~vViAtG~~~ 145 (408)
+++|.||.|+|.++
T Consensus 156 ~~a~~vV~AdG~~S 169 (392)
T PRK08773 156 LEAALAIAADGAAS 169 (392)
T ss_pred EEeCEEEEecCCCc
Confidence 89999999999765
No 121
>PRK07236 hypothetical protein; Provisional
Probab=98.94 E-value=2.9e-09 Score=101.32 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=72.2
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----CC---ccCC--------CCCCCeeeecC---CccccCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI----AS---LWQN--------RTYDRLKLHLP---KQFCQLP 78 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~----gg---~w~~--------~~~~~~~~~~~---~~~~~~~ 78 (408)
|..++|+|||||++|+++|..|++.|++|+|+|+.+.. |+ .+.. ...+......+ ..+....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 44578999999999999999999999999999998632 11 0100 00000000000 0000000
Q ss_pred C-----CCCCCCCCCCC-------Cc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 79 N-----FPFPEDFPRVP-------HQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 79 ~-----~~~~~~~~~~~-------~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
. ...+.....+. +. .+..++++++|++++... +.++|++.++ .++++|.||.|.|..+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~~~ad~vIgADG~~S 154 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG--DRVTARFADG-------RRETADLLVGADGGRS 154 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC--CeEEEEECCC-------CEEEeCEEEECCCCCc
Confidence 0 00000000000 01 124588899999998776 5677777764 5899999999999866
Q ss_pred CC
Q 035488 146 EK 147 (408)
Q Consensus 146 ~~ 147 (408)
..
T Consensus 155 ~v 156 (386)
T PRK07236 155 TV 156 (386)
T ss_pred hH
Confidence 43
No 122
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.94 E-value=4.2e-09 Score=100.16 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4699999999999999999999999999999864
No 123
>PRK07190 hypothetical protein; Provisional
Probab=98.93 E-value=3.2e-09 Score=103.43 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=71.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC--------------CCCC----------CeeeecCCcc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN--------------RTYD----------RLKLHLPKQF 74 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~--------------~~~~----------~~~~~~~~~~ 74 (408)
.+||+||||||+|+++|..|+++|++|+|||+.+.+...-+. ..++ .........+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 358999999999999999999999999999998754311000 0000 0000000000
Q ss_pred ccCCC--C-CCCCC-------CC---------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeC
Q 035488 75 CQLPN--F-PFPED-------FP---------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICR 135 (408)
Q Consensus 75 ~~~~~--~-~~~~~-------~~---------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad 135 (408)
..... + ..... +. +.+.+.+++++++++|+++..++ +.+.+++.++ .+++++
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g-------~~v~a~ 155 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNG-------ERIQSR 155 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCC-------cEEEeC
Confidence 00000 0 00000 00 01115688999999999998876 4455555443 489999
Q ss_pred EEEEeeCCCC
Q 035488 136 WLVVATGENA 145 (408)
Q Consensus 136 ~vViAtG~~~ 145 (408)
+||.|+|.++
T Consensus 156 ~vVgADG~~S 165 (487)
T PRK07190 156 YVIGADGSRS 165 (487)
T ss_pred EEEECCCCCH
Confidence 9999999765
No 124
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.92 E-value=3.9e-09 Score=101.19 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=71.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCC------C---------------ccCC---C--CCCCeeeec
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIA------S---------------LWQN---R--TYDRLKLHL 70 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~g------g---------------~w~~---~--~~~~~~~~~ 70 (408)
++||+||||||+|+++|..|++.| ++|+|+|+.+... + .|.. . ....+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999995 9999999976421 0 1100 0 000000000
Q ss_pred CCc-------cccCCC-CCCCCCCC-------------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcce
Q 035488 71 PKQ-------FCQLPN-FPFPEDFP-------------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCE 129 (408)
Q Consensus 71 ~~~-------~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 129 (408)
... ...+.. ......+. +.+.+.+++++++++|++++... +.+.|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g------- 151 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDG------- 151 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCC-------
Confidence 000 000000 00000000 00115578899999999998776 5666776553
Q ss_pred EEEEeCEEEEeeCCCCC
Q 035488 130 VEYICRWLVVATGENAE 146 (408)
Q Consensus 130 ~~i~ad~vViAtG~~~~ 146 (408)
..+.+|.||.|+|.++.
T Consensus 152 ~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 SVLEARLLVAADGARSK 168 (403)
T ss_pred CEEEeCEEEEcCCCChH
Confidence 47899999999997553
No 125
>PRK11445 putative oxidoreductase; Provisional
Probab=98.91 E-value=5.1e-09 Score=98.18 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=70.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC---------CC-ccCC--------CCCCC-eeeecCC--cccc-
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI---------AS-LWQN--------RTYDR-LKLHLPK--QFCQ- 76 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~---------gg-~w~~--------~~~~~-~~~~~~~--~~~~- 76 (408)
++||+||||||||+++|..|++. ++|+|+|+.+.. |+ ++.. ..... .....+. ....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 999999998642 22 1110 00000 0000000 0000
Q ss_pred -CCC-C--CCCCC--------CCCCC---CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEee
Q 035488 77 -LPN-F--PFPED--------FPRVP---HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVAT 141 (408)
Q Consensus 77 -~~~-~--~~~~~--------~~~~~---~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAt 141 (408)
... . .+... +..++ ...+++++++++|.++...+ +.|.|+...+ +.+ .++++|+||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~-g~~---~~i~a~~vV~Ad 153 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED--DGYHVIFRAD-GWE---QHITARYLVGAD 153 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC--CEEEEEEecC-CcE---EEEEeCEEEECC
Confidence 000 0 00000 00000 13467888999999998766 5677776322 111 479999999999
Q ss_pred CCCCC
Q 035488 142 GENAE 146 (408)
Q Consensus 142 G~~~~ 146 (408)
|..+.
T Consensus 154 G~~S~ 158 (351)
T PRK11445 154 GANSM 158 (351)
T ss_pred CCCcH
Confidence 97654
No 126
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.91 E-value=8.1e-09 Score=98.96 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=31.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
.+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 469999999999999999999999999999985
No 127
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.91 E-value=6.8e-09 Score=99.53 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=31.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 589999999999999999999999999999976
No 128
>PRK07045 putative monooxygenase; Reviewed
Probab=98.90 E-value=5.2e-09 Score=99.71 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=72.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---C---ccC-------------C---C---CCCCeeeecCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA---S---LWQ-------------N---R---TYDRLKLHLPKQ 73 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g---g---~w~-------------~---~---~~~~~~~~~~~~ 73 (408)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+. + ++. . . ....+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 4689999999999999999999999999999987541 1 111 0 0 000011000000
Q ss_pred -cccCCCCCC-CCCC-C--------C----C-CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEE
Q 035488 74 -FCQLPNFPF-PEDF-P--------R----V-PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWL 137 (408)
Q Consensus 74 -~~~~~~~~~-~~~~-~--------~----~-~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~v 137 (408)
....+.... ...+ . + . ....+++++++++|++++...+...+.|++.++ .++.+|.|
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~~~~~~v 157 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG-------ERVAPTVL 157 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC-------CEEECCEE
Confidence 000010000 0000 0 0 0 002357789999999998776422345666543 57999999
Q ss_pred EEeeCCCCC
Q 035488 138 VVATGENAE 146 (408)
Q Consensus 138 ViAtG~~~~ 146 (408)
|.|+|.++.
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999998663
No 129
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.90 E-value=4.3e-09 Score=100.58 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=32.4
Q ss_pred cccCCcEEECCChHHHHHHHHHHHc---CCCEEEEecC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQ---GVPFIILERA 51 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~---g~~v~lie~~ 51 (408)
|..+||+||||||+|+++|..|+++ |++|+|||+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4467999999999999999999998 9999999995
No 130
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.90 E-value=8.7e-09 Score=96.82 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=70.0
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------cCC---CC--CCCeeeecCCcc-
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL-------------------WQN---RT--YDRLKLHLPKQF- 74 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~-------------------w~~---~~--~~~~~~~~~~~~- 74 (408)
+||+||||||+|+++|..|+++|++|+|||+.+.+... |.. .. ...........+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 58999999999999999999999999999998754311 000 00 000000000000
Q ss_pred ---------ccCCCCCCCCCCCC---------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceE
Q 035488 75 ---------CQLPNFPFPEDFPR---------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEV 130 (408)
Q Consensus 75 ---------~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~ 130 (408)
.............. .+.+.+++++++++|+++..+. +..++.+.+...++ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~--~~ 157 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGE--EE 157 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCE--EE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCc--ee
Confidence 00000000000000 0015668899999999998877 55556666553332 25
Q ss_pred EEEeCEEEEeeCCCCC
Q 035488 131 EYICRWLVVATGENAE 146 (408)
Q Consensus 131 ~i~ad~vViAtG~~~~ 146 (408)
++++|.||.|.|.++.
T Consensus 158 ~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 158 TIEADLVVGADGAHSK 173 (356)
T ss_dssp EEEESEEEE-SGTT-H
T ss_pred EEEEeeeecccCcccc
Confidence 8999999999997663
No 131
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.89 E-value=2.2e-09 Score=102.38 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=68.7
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCC----eeee--cCCccc-----cCCCCCC--CCCC-
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDR----LKLH--LPKQFC-----QLPNFPF--PEDF- 86 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~----~~~~--~~~~~~-----~~~~~~~--~~~~- 86 (408)
||+||||||||+++|..|++.|++|+|||+.+.+++......+.. .... ....+. ..+.... ...+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999887765211111110 0000 000000 0000000 0000
Q ss_pred -----------CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 87 -----------PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 87 -----------~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
.+.+.+.++.++ .++|..+..... +.+.|++.++ .+++++.||+|+|.++
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~~v~~~~g-------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALSTVYCAGG-------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-ceeEEEeCCC-------CEEEeCEEEECCCCch
Confidence 001114456554 567888876622 5666777653 4899999999999755
No 132
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.88 E-value=1.4e-08 Score=96.89 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=33.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 468999999999999999999999999999998764
No 133
>PRK07588 hypothetical protein; Provisional
Probab=98.88 E-value=4.3e-09 Score=100.42 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=73.0
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--C----ccCCC------------------CCCCeeeecCCc--c
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA--S----LWQNR------------------TYDRLKLHLPKQ--F 74 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g--g----~w~~~------------------~~~~~~~~~~~~--~ 74 (408)
+|+|||||++|+++|..|++.|++|+|+|+.+.+. | .|... ....+....... .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 79999999999999999999999999999986542 1 12110 011111110000 0
Q ss_pred ccCCCCCCCCCCC-CCC--------------CccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEE
Q 035488 75 CQLPNFPFPEDFP-RVP--------------HQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVV 139 (408)
Q Consensus 75 ~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vVi 139 (408)
...+...+...+. .+. ...+++++++++|++++..+ +.++|++.++ .++++|.||.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~~~~d~vIg 152 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR--DGVRVTFERG-------TPRDFDLVIG 152 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC--CeEEEEECCC-------CEEEeCEEEE
Confidence 0010000000000 000 02357889999999998776 5667777664 4679999999
Q ss_pred eeCCCCCCC
Q 035488 140 ATGENAEKI 148 (408)
Q Consensus 140 AtG~~~~~~ 148 (408)
|.|.++...
T Consensus 153 ADG~~S~vR 161 (391)
T PRK07588 153 ADGLHSHVR 161 (391)
T ss_pred CCCCCccch
Confidence 999866543
No 134
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.87 E-value=6.7e-09 Score=99.10 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=32.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4699999999999999999999999999999975
No 135
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.87 E-value=1.5e-08 Score=96.42 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=32.1
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
||+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 6999999999999999999999999999999754
No 136
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.86 E-value=1.4e-08 Score=96.82 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=33.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
.+||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 469999999999999999999999999999998644
No 137
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.86 E-value=3.9e-09 Score=72.97 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=38.9
Q ss_pred EECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeee
Q 035488 24 IVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLH 69 (408)
Q Consensus 24 IIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~ 69 (408)
|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++...+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d 46 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFD 46 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEe
Confidence 8999999999999999999999999999999998876545554444
No 138
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.84 E-value=9.8e-09 Score=97.79 Aligned_cols=115 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred EEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCC-----C------CCeeeecCC--c-----cccC-------
Q 035488 23 VIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRT-----Y------DRLKLHLPK--Q-----FCQL------- 77 (408)
Q Consensus 23 vIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~-----~------~~~~~~~~~--~-----~~~~------- 77 (408)
+|||||++|++||..|++.|.+|+|+|+++.+|+.+.... + .......+. . +..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999998876432100 0 000000000 0 0000
Q ss_pred ----CCCCCC-----CCCCC-------------CCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeC
Q 035488 78 ----PNFPFP-----EDFPR-------------VPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICR 135 (408)
Q Consensus 78 ----~~~~~~-----~~~~~-------------~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad 135 (408)
....+. ..++. .+.+.+++++.+++|+++.... +.|.|++.. ..+.+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~~--------~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETSG--------GEYEAD 150 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEECC--------cEEEcC
Confidence 000000 00100 1115678889999999997765 566676632 478999
Q ss_pred EEEEeeCCCCCC
Q 035488 136 WLVVATGENAEK 147 (408)
Q Consensus 136 ~vViAtG~~~~~ 147 (408)
+||+|+|..+.|
T Consensus 151 ~VIlAtG~~s~p 162 (400)
T TIGR00275 151 KVILATGGLSYP 162 (400)
T ss_pred EEEECCCCcccC
Confidence 999999976543
No 139
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.84 E-value=1.9e-08 Score=95.25 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=31.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
+.||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 468999999999999999999999999999986
No 140
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.83 E-value=1e-08 Score=97.51 Aligned_cols=119 Identities=23% Similarity=0.319 Sum_probs=71.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCCC-------------------ccC---C---CCCCCeeeecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA-NCIAS-------------------LWQ---N---RTYDRLKLHLPK 72 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~-~~~gg-------------------~w~---~---~~~~~~~~~~~~ 72 (408)
.+||+||||||+|+++|..|++.|++|+|||+. ..+-. .+. . ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 468999999999999999999999999999998 22110 000 0 000000000000
Q ss_pred c-cccCCCCCCCCCCC--------------CCCCcc-CccccccceeEEEEEcCCCCcEEEEEe-ecCCCCcceEEEEeC
Q 035488 73 Q-FCQLPNFPFPEDFP--------------RVPHQF-DINPRFNETVQSAKYDETFGFWRIKTI-SSSDSSFCEVEYICR 135 (408)
Q Consensus 73 ~-~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~~~i~ad 135 (408)
. ...+........-. +...+. +++++++++|+.++.++ +..++++. ++ .+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG-------~~~~a~ 152 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDG-------ETLDAD 152 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCC-------cEEecC
Confidence 0 00000000000000 000033 37899999999999887 55557777 44 589999
Q ss_pred EEEEeeCCCCC
Q 035488 136 WLVVATGENAE 146 (408)
Q Consensus 136 ~vViAtG~~~~ 146 (408)
.||.|.|.+|.
T Consensus 153 llVgADG~~S~ 163 (387)
T COG0654 153 LLVGADGANSA 163 (387)
T ss_pred EEEECCCCchH
Confidence 99999997663
No 141
>PRK06753 hypothetical protein; Provisional
Probab=98.83 E-value=3.2e-08 Score=93.85 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=69.9
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------cCC-----CCCCCeeeecCCcccc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL-------------------WQN-----RTYDRLKLHLPKQFCQ 76 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~~ 76 (408)
+|+||||||+|+++|..|++.|++|+|+|+.+.+... |.. ..........+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 6999999999999999999999999999998754310 100 00011111111000 0
Q ss_pred CCCCCCCCCCCCC-CC-----------ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCC
Q 035488 77 LPNFPFPEDFPRV-PH-----------QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGEN 144 (408)
Q Consensus 77 ~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~ 144 (408)
.....+......+ .. -.+.+++++++|++++..+ +.++|++.++ .++.+|.||.|.|.+
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~~~~~~vigadG~~ 151 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET--DKVTIHFADG-------ESEAFDLCIGADGIH 151 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC--CcEEEEECCC-------CEEecCEEEECCCcc
Confidence 0000000000000 00 1134578899999998665 6677777654 578999999999976
Q ss_pred CC
Q 035488 145 AE 146 (408)
Q Consensus 145 ~~ 146 (408)
+.
T Consensus 152 S~ 153 (373)
T PRK06753 152 SK 153 (373)
T ss_pred hH
Confidence 53
No 142
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.82 E-value=1e-08 Score=97.56 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=70.2
Q ss_pred CcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCC----------ccCC--------CCCCCe----------eeecC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIAS----------LWQN--------RTYDRL----------KLHLP 71 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~gg----------~w~~--------~~~~~~----------~~~~~ 71 (408)
||+||||||+|+++|..|+++| ++|+|+|+.+.+.- ++.. ..++.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 6999999999999999999999 99999999864310 1100 000000 00000
Q ss_pred Ccccc--CCCCCCCCCCCCC-C-------------Cc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEe
Q 035488 72 KQFCQ--LPNFPFPEDFPRV-P-------------HQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYIC 134 (408)
Q Consensus 72 ~~~~~--~~~~~~~~~~~~~-~-------------~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~a 134 (408)
..... .....+......| . .+ .+++++++++|+++.... +.++|++.++ .++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g-------~~~~a 151 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNG-------QQLRA 151 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCC-------CEEEe
Confidence 00000 0000000000001 0 03 378889999999998766 5566776553 47999
Q ss_pred CEEEEeeCCCCC
Q 035488 135 RWLVVATGENAE 146 (408)
Q Consensus 135 d~vViAtG~~~~ 146 (408)
|.||.|+|.++.
T Consensus 152 d~vV~AdG~~S~ 163 (382)
T TIGR01984 152 KLLIAADGANSK 163 (382)
T ss_pred eEEEEecCCChH
Confidence 999999997653
No 143
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.80 E-value=1e-08 Score=98.07 Aligned_cols=37 Identities=43% Similarity=0.588 Sum_probs=33.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
..+|+|||||++|+++|..|++.|++|+|+|+.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 3589999999999999999999999999999987653
No 144
>PRK06126 hypothetical protein; Provisional
Probab=98.80 E-value=7.8e-08 Score=95.80 Aligned_cols=35 Identities=43% Similarity=0.655 Sum_probs=32.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.++|+||||||+|+++|..|+++|++|+|||+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 46999999999999999999999999999999864
No 145
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.80 E-value=3e-08 Score=98.69 Aligned_cols=123 Identities=20% Similarity=0.343 Sum_probs=73.2
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------cCC--------CCCCC----------eeee-cCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL------WQN--------RTYDR----------LKLH-LPK 72 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~------w~~--------~~~~~----------~~~~-~~~ 72 (408)
..+||+||||||+|+++|..|+++|++|+|||+.+.+... |.. ...+. .... ...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 4579999999999999999999999999999999754321 100 00000 0000 000
Q ss_pred ccccCCCCC-CCCCCCCC---------------CCc-cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeC
Q 035488 73 QFCQLPNFP-FPEDFPRV---------------PHQ-FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICR 135 (408)
Q Consensus 73 ~~~~~~~~~-~~~~~~~~---------------~~~-~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad 135 (408)
....+.... ....++.+ +.+ .+++++++++|++++.+. +.+++++.+.++ . .++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g-~---~~i~ad 175 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDG-P---YTLEAD 175 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCC-c---EEEEeC
Confidence 000000000 00000000 012 357889999999998776 555566554322 1 479999
Q ss_pred EEEEeeCCCCC
Q 035488 136 WLVVATGENAE 146 (408)
Q Consensus 136 ~vViAtG~~~~ 146 (408)
+||.|+|.++.
T Consensus 176 ~vVgADG~~S~ 186 (547)
T PRK08132 176 WVIACDGARSP 186 (547)
T ss_pred EEEECCCCCcH
Confidence 99999997663
No 146
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.78 E-value=4.8e-08 Score=92.32 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=68.3
Q ss_pred CcEEECCChHHHHHHHHH--HHcCCCEEEEecCCCC--CC--ccCC---C----------CCCCeeeecCCccccCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGL--KNQGVPFIILERANCI--AS--LWQN---R----------TYDRLKLHLPKQFCQLPNFP 81 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l--~~~g~~v~lie~~~~~--gg--~w~~---~----------~~~~~~~~~~~~~~~~~~~~ 81 (408)
||+||||||||+++|.+| ++.|.+|+|||+++.. +. +|.. . .++......+..-......+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7779999999998766 22 3321 1 01111111110000000000
Q ss_pred CC----CCCCCCCC---ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 82 FP----EDFPRVPH---QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 82 ~~----~~~~~~~~---~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
+. .++.+++. ..+...+++++|.+|+... ..+.|++.++ .+++|+.||-|+|.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~--~~~~v~~~~g-------~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETG--DGVLVVLADG-------RTIRARVVVDARGP 140 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecC--ceEEEEECCC-------CEEEeeEEEECCCc
Confidence 00 00000000 1123467788999999887 4555777765 68999999999994
No 147
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.77 E-value=5.5e-08 Score=92.73 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+||+||||||||++||..|++.|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4799999999999999999999999999999754
No 148
>PLN02697 lycopene epsilon cyclase
Probab=98.77 E-value=1.7e-08 Score=98.32 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=67.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---CccCCCCCCCeeee--cCCccc----cCCCCCCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA---SLWQNRTYDRLKLH--LPKQFC----QLPNFPFPEDFPRV 89 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g---g~w~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~ 89 (408)
.+||+||||||||+++|..|++.|++|+|||+....+ |.|... +..+... ....+. -.+.......-..|
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 5899999999999999999999999999999864332 344321 0000000 000000 00000000000011
Q ss_pred C---------------CccCccccccceeEEEEEcCCCCcEEE-EEeecCCCCcceEEEEeCEEEEeeCCCC
Q 035488 90 P---------------HQFDINPRFNETVQSAKYDETFGFWRI-KTISSSDSSFCEVEYICRWLVVATGENA 145 (408)
Q Consensus 90 ~---------------~~~~~~~~~~~~V~~i~~~~~~~~~~V-~~~~~~~~~~~~~~i~ad~vViAtG~~~ 145 (408)
. .+.++++ ++++|+.+.... +.+.+ ++.++ .++.++.||+|+|.++
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG-------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDG-------RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCC-------cEEECCEEEECCCcCh
Confidence 1 1446666 668899988665 33333 33333 5799999999999876
No 149
>PRK06185 hypothetical protein; Provisional
Probab=98.77 E-value=3.5e-08 Score=94.69 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=32.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 47999999999999999999999999999999754
No 150
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.76 E-value=2.5e-08 Score=95.39 Aligned_cols=35 Identities=37% Similarity=0.629 Sum_probs=32.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998754
No 151
>PLN02661 Putative thiazole synthesis
Probab=98.75 E-value=3.2e-08 Score=90.20 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCC-ccCCCC-CCCeeeecC-CccccCCCCCCCC--CC------
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-GVPFIILERANCIAS-LWQNRT-YDRLKLHLP-KQFCQLPNFPFPE--DF------ 86 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~~gg-~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~------ 86 (408)
.+||+|||||++|++||+.|++. |++|+|||+...+|| .|.... +.......+ ..+...-..++.. ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 57999999999999999999986 899999999988866 553221 111100000 0000000111110 00
Q ss_pred CCC--------CCccCccccccceeEEEEEcCCCCcEEEEE------eecCCCC-cceEEEEeCEEEEeeCC
Q 035488 87 PRV--------PHQFDINPRFNETVQSAKYDETFGFWRIKT------ISSSDSS-FCEVEYICRWLVVATGE 143 (408)
Q Consensus 87 ~~~--------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~------~~~~~~~-~~~~~i~ad~vViAtG~ 143 (408)
..+ ..+.+++++.++.|+.+-.+++ ...-|.+ .++.+.. .+...+.+++||+|||.
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 000 0135678888888888876542 3322332 2222110 00147899999999994
No 152
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.74 E-value=2.7e-08 Score=71.63 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=34.4
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccc
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREV 217 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~ 217 (408)
+++|||+|.+|+|+|..|+..|.+|+++++++ .+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~ 39 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFD 39 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcC
Confidence 68999999999999999999999999999999 4544444
No 153
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.74 E-value=9.5e-08 Score=91.14 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=32.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 36899999999999999999999999999999864
No 154
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.74 E-value=3.2e-08 Score=93.05 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred ccCccccccceeEEEEEcCCCCcEE-EEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWR-IKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+.|++++.+++|+++..+. +.++ |++.+ ..+.+|+||+|+|.++..
T Consensus 159 ~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~--------g~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVDG--GRVTGVRTSD--------GEIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HTT-EEEESEEEEEEEEET--TEEEEEEETT--------EEEEECEEEE--GGGHHH
T ss_pred Hhhhhccccccccchhhcc--cccccccccc--------cccccceeEeccccccee
Confidence 6789999999999999887 6666 77777 359999999999976543
No 155
>PRK07538 hypothetical protein; Provisional
Probab=98.73 E-value=2.7e-07 Score=88.72 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=32.1
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 7999999999999999999999999999998754
No 156
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.72 E-value=2.8e-08 Score=95.50 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=32.1
Q ss_pred CcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIA 55 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~g 55 (408)
+|+|||||++|+++|..|+++| ++|+|+|+.+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987654
No 157
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.72 E-value=7.6e-08 Score=93.07 Aligned_cols=32 Identities=44% Similarity=0.706 Sum_probs=30.3
Q ss_pred CCcEEECCChHHHHHHHHHHH----cCCCEEEEecC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKN----QGVPFIILERA 51 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~----~g~~v~lie~~ 51 (408)
+||+||||||+|+++|..|++ .|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999999 79999999994
No 158
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.72 E-value=6.2e-08 Score=91.98 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=33.6
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
..+||+|||||.+|+++|.+|++.|.+|+|+|+....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 3579999999999999999999999999999998643
No 159
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.72 E-value=1e-07 Score=93.68 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=33.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||+|||||..|+++|+.|+++|++|+|+|+++..+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS 42 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4799999999999999999999999999999986443
No 160
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.71 E-value=9.4e-08 Score=91.58 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=42.8
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAE 146 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~ 146 (408)
++|..+...++|+++..++ +.|.|++.+..+++ ..+++++.||.|||.|..
T Consensus 176 ~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~--~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 176 EHGAEILTYTRVESLRREG--GVWGVEVEDRETGE--TYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hcccchhhcceeeeeeecC--CEEEEEEEecCCCc--EEEEEcCEEEECCCccHH
Confidence 7788889999999999888 57889998866544 378999999999998764
No 161
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.71 E-value=6.2e-08 Score=94.74 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=33.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN-CIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~-~~g 55 (408)
.+||+|||||+||+.||..+++.|.+|+|+|++. .+|
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG 41 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 41 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence 5799999999999999999999999999999984 444
No 162
>PRK06996 hypothetical protein; Provisional
Probab=98.70 E-value=9.2e-08 Score=91.42 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=69.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC----CCEEEEecCCCCC---------------------CccCCCCCCCeeeecC--
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG----VPFIILERANCIA---------------------SLWQNRTYDRLKLHLP-- 71 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g----~~v~lie~~~~~g---------------------g~w~~~~~~~~~~~~~-- 71 (408)
.+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|.....+.......
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 469999999999999999999987 4699999974221 1222111110011100
Q ss_pred Ccc----ccCCCCCCCC-C-CCCC----------CCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeC
Q 035488 72 KQF----CQLPNFPFPE-D-FPRV----------PHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICR 135 (408)
Q Consensus 72 ~~~----~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad 135 (408)
... ........+. . .... +...++++++++++++++... ..+++++.++++ + .++++|
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~g-~---~~i~a~ 164 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQG-A---RTLRAR 164 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCCc-c---eEEeee
Confidence 000 0000000000 0 0000 014567788899999997766 566677655433 1 479999
Q ss_pred EEEEeeCC
Q 035488 136 WLVVATGE 143 (408)
Q Consensus 136 ~vViAtG~ 143 (408)
+||.|+|.
T Consensus 165 lvIgADG~ 172 (398)
T PRK06996 165 IAVQAEGG 172 (398)
T ss_pred EEEECCCC
Confidence 99999995
No 163
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.68 E-value=8.3e-08 Score=90.01 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=36.4
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIAS 56 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg 56 (408)
|.++||+|||||..|+++|..|.+++ ++|+|+||.+.++.
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 34689999999999999999999998 99999999987763
No 164
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.68 E-value=1.4e-07 Score=92.81 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=40.0
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+.|+.++.+++|+++...+ +.|.|++.++.+.+ .++.++.||+|+|.|+..
T Consensus 167 ~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~g~~---~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 167 ERGATILTRTRCVSARREG--GLWRVETRDADGET---RTVRARALVNAAGPWVTD 217 (502)
T ss_pred HCCCEEecCcEEEEEEEcC--CEEEEEEEeCCCCE---EEEEecEEEECCCccHHH
Confidence 5678888999999998765 66778777654333 679999999999987643
No 165
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.68 E-value=1.4e-07 Score=90.64 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=33.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
|+||+|||||..|+++|.+|++.|.+|+|+|+++.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 368999999999999999999999999999998643
No 166
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=8.3e-09 Score=74.29 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=57.8
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccccc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPRFN 100 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...+. . .....+.+++.+.+++++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~-----~---------------~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFD-----P---------------DAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS-----H---------------HHHHHHHHHHHHTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcC-----H---------------HHHHHHHHHHHHCCCEEEeC
Confidence 489999999999999999999999999999986531110 0 00001122344669999999
Q ss_pred ceeEEEEEcCCCCcEEEEEee
Q 035488 101 ETVQSAKYDETFGFWRIKTIS 121 (408)
Q Consensus 101 ~~V~~i~~~~~~~~~~V~~~~ 121 (408)
+.+..++.+++ + ++|++++
T Consensus 61 ~~v~~i~~~~~-~-~~V~~~~ 79 (80)
T PF00070_consen 61 TKVKEIEKDGD-G-VEVTLED 79 (80)
T ss_dssp EEEEEEEEETT-S-EEEEEET
T ss_pred CEEEEEEEeCC-E-EEEEEec
Confidence 99999998874 3 5577765
No 167
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.66 E-value=1.2e-07 Score=91.51 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=32.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+||||||||++||..|++.|++|+|+|+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999999999999999999974
No 168
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.65 E-value=5e-08 Score=93.01 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=76.8
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcc
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDIN 96 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
..+++++|||||+.|+..|..+++.|.+|+|+|+.+.+-..+ +......+...+.+.++.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~--------------------D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE--------------------DPEISKELTKQLEKGGVK 230 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC--------------------CHHHHHHHHHHHHhCCeE
Confidence 457789999999999999999999999999999998653100 000111122233345788
Q ss_pred ccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCC
Q 035488 97 PRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPE 151 (408)
Q Consensus 97 ~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~ 151 (408)
++.+++|+.++..+ +...+++.++.+ .++++|+|++|+| .+|+...
T Consensus 231 i~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~~~ad~vLvAiG--R~Pn~~~ 276 (454)
T COG1249 231 ILLNTKVTAVEKKD--DGVLVTLEDGEG-----GTIEADAVLVAIG--RKPNTDG 276 (454)
T ss_pred EEccceEEEEEecC--CeEEEEEecCCC-----CEEEeeEEEEccC--CccCCCC
Confidence 99999999998776 335577766521 3789999999999 6666653
No 169
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.64 E-value=1e-07 Score=93.05 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=32.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..||||||+|++|++||..+++.|.+|+||||.+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35999999999999999999999999999999863
No 170
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.64 E-value=1.2e-07 Score=89.38 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.8
Q ss_pred CcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIAS 56 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg 56 (408)
||+|||||+||+++|..|++. |++|+++|+.+.+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999987776
No 171
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.64 E-value=2.4e-07 Score=91.87 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=33.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
.+||+|||||..|+++|+.|+++|++|+|||+.+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 479999999999999999999999999999997543
No 172
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.64 E-value=6.8e-08 Score=94.90 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=35.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||||||+|.+|++||+.+++.|.+|+||||.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 46999999999999999999999999999999987776
No 173
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.62 E-value=7.9e-08 Score=93.14 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=33.8
Q ss_pred CcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIAS 56 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~gg 56 (408)
||||||+|.+|++||..+++.| .+|+|+||.+..+|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 7999999999999999999999 99999999987665
No 174
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.62 E-value=1.8e-07 Score=89.02 Aligned_cols=35 Identities=40% Similarity=0.617 Sum_probs=32.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35899999999999999999999999999999874
No 175
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.62 E-value=2.9e-07 Score=92.58 Aligned_cols=35 Identities=37% Similarity=0.508 Sum_probs=32.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-CCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-GVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~ 53 (408)
.+||+||||||+|+++|..|+++ |++|+|||+.+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 56999999999999999999995 999999999864
No 176
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.61 E-value=1.1e-07 Score=92.92 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=70.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+... + +......+.+.+.+.+++++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-----~---------------~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-----E---------------DAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-----C---------------CHHHHHHHHHHHHhcCCEEE
Confidence 578999999999999999999999999999998753210 0 00000011223445689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|+.++.....+...+...++ .+ .++.+|.||+|+| ..|+.+
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g--~~---~~i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNG--EE---KTLEADKVLVSVG--RRPNTE 284 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCC--ce---EEEEeCEEEEeeC--CccCCC
Confidence 999999997521113322223232 12 4799999999999 566554
No 177
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.59 E-value=1.2e-07 Score=90.40 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=33.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~g 55 (408)
++||+|||||.+|+++|++|+++ |.+|+|+|+...++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 36999999999999999999999 99999999986543
No 178
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.59 E-value=1.1e-07 Score=90.27 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.8
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+||+|||||.+|+++|++|+++|.+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 4899999999999999999999999999999754
No 179
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.57 E-value=3.8e-07 Score=83.11 Aligned_cols=150 Identities=13% Similarity=0.203 Sum_probs=95.6
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccC--C---chHHHHHHHHhhcc---hHHHHHHHHHHHH
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLG--K---STFQLAVLMMKYFP---LWLVDKILLILAR 247 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~--~---~~~~~~~~~~~~l~---~~~~~~~~~~~~~ 247 (408)
...|+|||+|.+|+-+|..+++.|.+|+++++.+..-.-....| + .+......+...+| .....-+.++-.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 35799999999999999999999999999998872221111222 1 22222334444455 4444444444444
Q ss_pred HHhhhhhhcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEeCC----eEEEecCcEEccCEEEEc
Q 035488 248 LILGNVEKYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFSPG----KVELVNGQVLEIDSVVLA 321 (408)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~----~v~~~~g~~~~~D~vi~a 321 (408)
.+..=.+.+|+.......-.+.....+....-+-++..+++.+|+++++ |.+++.+ .+.+.+|+++.||.+|+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEe
Confidence 4444456777653222222222222233344556677788899999987 7777655 266678889999999999
Q ss_pred CCCC
Q 035488 322 TGYR 325 (408)
Q Consensus 322 tG~~ 325 (408)
||=.
T Consensus 163 tGG~ 166 (408)
T COG2081 163 TGGK 166 (408)
T ss_pred cCCc
Confidence 9944
No 180
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.55 E-value=5.9e-07 Score=91.44 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
+||+|||||.+|+++|.+|+++|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 58999999999999999999999999999998543
No 181
>PLN02985 squalene monooxygenase
Probab=98.55 E-value=7.5e-07 Score=87.39 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=33.4
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 347899999999999999999999999999999975
No 182
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.53 E-value=2.4e-07 Score=90.42 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=71.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+... .+ . .....+.+.+.+.+++++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----~~-------~--------~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-----ED-------A--------EVSKVVAKALKKKGVKIL 229 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-----CC-------H--------HHHHHHHHHHHHcCCEEE
Confidence 578999999999999999999999999999998753210 00 0 000011123345688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|.+++..+ +.+.++..++ .+ .++.+|.||+|+| ..|+..
T Consensus 230 ~~~~v~~i~~~~--~~v~v~~~~g--~~---~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 230 TNTKVTAVEKND--DQVVYENKGG--ET---ETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred eCCEEEEEEEeC--CEEEEEEeCC--cE---EEEEeCEEEEecC--CcccCC
Confidence 999999998765 4444544332 11 4799999999999 555544
No 183
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.52 E-value=2.3e-07 Score=86.09 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCCCCceEEEeecccc--CccchhhHHHHHHHHHHHhhHH
Q 035488 351 GWKGKTGLYAVGFTKRG--LSGASLDAMSVALDIAKSWKEE 389 (408)
Q Consensus 351 ~~t~~~~iya~Gd~~~~--~~~a~~~a~~~a~~i~~~~~~~ 389 (408)
.....||+|++|+.++. +..|..||..++.+++..++++
T Consensus 351 ~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 351 ETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp BBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33469999999998874 5589999999999999988764
No 184
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.52 E-value=1.1e-06 Score=85.21 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=33.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~g 55 (408)
.+||+|||||.+|+++|..|++. +.+|+|+||.+.++
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 46999999999999999999999 89999999954444
No 185
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=1.9e-07 Score=90.33 Aligned_cols=100 Identities=20% Similarity=0.146 Sum_probs=70.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||++|+.+|..+++.|.+|+++++.+.+.... +. .......+.+.+.+++++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-----~~---------------~~~~~~~~~l~~~GI~i~ 216 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-----EP---------------SVAALAKQYMEEDGITFL 216 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-----CH---------------HHHHHHHHHHHHcCCEEE
Confidence 5689999999999999999999999999999987542100 00 000011123345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|+.++..+ +.+.++. ++ .++.+|.||+|+| ..|+..
T Consensus 217 ~~~~V~~i~~~~--~~v~v~~-~g-------~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 217 LNAHTTEVKNDG--DQVLVVT-ED-------ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred cCCEEEEEEecC--CEEEEEE-CC-------eEEEcCEEEEeeC--CCCCcc
Confidence 999999998754 4433432 22 5799999999999 566543
No 186
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=2.6e-07 Score=90.31 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=73.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... . +........+.+.+.+++++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----~---------------d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-----A---------------DEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----C---------------CHHHHHHHHHHHHHcCcEEE
Confidence 478999999999999999999999999999998753210 0 00000011122334589999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|+.++... +...++..++++.+ ..+.+|.|++|+| ..|+.+
T Consensus 243 ~~~~v~~i~~~~--~~v~v~~~~~~g~~---~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 243 LGVKIGEIKTGG--KGVSVAYTDADGEA---QTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred eCcEEEEEEEcC--CEEEEEEEeCCCce---eEEEcCEEEEccC--CccCCC
Confidence 999999998765 44446555543332 5799999999999 566654
No 187
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=1.5e-07 Score=91.83 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=44.2
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeec
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHL 70 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~ 70 (408)
|.++||+|||||++||+||..|+++|++|+|+||++.+||--+...+.+.+.+.
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~ 54 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDT 54 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEecc
Confidence 346799999999999999999999999999999999999854443344554443
No 188
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.49 E-value=4.5e-07 Score=90.23 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=32.7
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
...+|+|||||++|+++|..|+++|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 35789999999999999999999999999999975
No 189
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.48 E-value=3.2e-07 Score=89.50 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=72.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+ + ......+.+.+.+.+++++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-----d---------------~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-----E---------------PEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-----C---------------HHHHHHHHHHHHHcCCEEE
Confidence 4789999999999999999999999999999987542100 0 0000011223335689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|+.++.++ +.+.+++...+ +. .++.+|.||+|+| .+|+..
T Consensus 226 ~~~~V~~i~~~~--~~~~v~~~~~~-~~---~~i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 226 TSAQVKAVSVRG--GGKIITVEKPG-GQ---GEVEADELLVATG--RRPNTD 269 (463)
T ss_pred cCcEEEEEEEcC--CEEEEEEEeCC-Cc---eEEEeCEEEEeEC--CCcCCC
Confidence 999999998764 44445554321 12 5799999999999 566554
No 190
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=2.9e-07 Score=89.85 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=72.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+... .+ ......+.+.+.+.+++++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----~~---------------~~~~~~l~~~l~~~gV~i~ 231 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-----ED---------------KEISKLAERALKKRGIKIK 231 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----CC---------------HHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999999999999998754210 00 0000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|++++... +.+.+++.++ +.+ .++.+|.||+|+| .+|+..
T Consensus 232 ~~~~V~~i~~~~--~~v~v~~~~g-g~~---~~i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 232 TGAKAKKVEQTD--DGVTVTLEDG-GKE---ETLEADYVLVAVG--RRPNTE 275 (462)
T ss_pred eCCEEEEEEEeC--CEEEEEEEeC-Cee---EEEEeCEEEEeeC--CccCCC
Confidence 999999998765 4555555443 212 5799999999999 555543
No 191
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.46 E-value=1.9e-07 Score=90.86 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.7
Q ss_pred ccCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANC 53 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~ 53 (408)
...||+|||||.+|+++|++|++. |.+|+|+|++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 357999999999999999999998 899999999753
No 192
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.46 E-value=1.2e-06 Score=81.93 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=31.0
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
||+|||+|.|||++|..|.+. ++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999998754
No 193
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.44 E-value=2.3e-06 Score=83.33 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCI 54 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~ 54 (408)
+||+|||||.+|+++|.+|++. |.+|+|+||.+.+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~ 37 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAV 37 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcc
Confidence 4899999999999999999998 8999999997643
No 194
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.44 E-value=3.7e-07 Score=86.57 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=70.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.... .+. .....+.+.+.+.+++++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~----~~~---------------~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----MPP---------------EVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh----CCH---------------HHHHHHHHHHHhCCCEEE
Confidence 4689999999999999999999999999999987532100 000 000011223345688899
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
++++|.+++... +.+.|++.++ .++.+|.||+|+|.
T Consensus 202 ~~~~v~~i~~~~--~~~~v~~~~g-------~~i~~D~vI~a~G~ 237 (377)
T PRK04965 202 LKSQLQGLEKTD--SGIRATLDSG-------RSIEVDAVIAAAGL 237 (377)
T ss_pred ECCeEEEEEccC--CEEEEEEcCC-------cEEECCEEEECcCC
Confidence 999999998765 5566776654 58999999999994
No 195
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.44 E-value=3.9e-07 Score=81.92 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=106.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
+++++|||||..||..+.-..++|.+||++|-.+++++.... .....+.+.+.+.++.++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~--------------------Eisk~~qr~L~kQgikF~ 270 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDG--------------------EISKAFQRVLQKQGIKFK 270 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCH--------------------HHHHHHHHHHHhcCceeE
Confidence 678999999999999999999999999999999887753211 111122334445688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCC------CcceeeeeccCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQ------HFEGNVMHAGDYKSGA 172 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~------~~~~~~~~~~~~~~~~ 172 (408)
++++|++++.+.+ +...|++.+..+.+ ..++++|.+++|+| .+|+.-.+ |++ +..+++....++..
T Consensus 271 l~tkv~~a~~~~d-g~v~i~ve~ak~~k--~~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~D~r~rv~v~~~f~t-- 342 (506)
T KOG1335|consen 271 LGTKVTSATRNGD-GPVEIEVENAKTGK--KETLECDVLLVSIG--RRPFTEGL-GLEKIGIELDKRGRVIVNTRFQT-- 342 (506)
T ss_pred eccEEEEeeccCC-CceEEEEEecCCCc--eeEEEeeEEEEEcc--CcccccCC-Chhhcccccccccceeccccccc--
Confidence 9999999998885 47778887766555 37899999999999 56654332 111 12233333222221
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCC
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNA 200 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~ 200 (408)
.--++-.||.-..|--+|...-+.|.
T Consensus 343 --~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 343 --KVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred --cCCceEEecccCCcchhhhhhhhhch
Confidence 23478889987777777777666654
No 196
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=6.5e-07 Score=87.14 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=70.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||||+.|+.+|..+++.|.+|+++++.+.+.. .. +......+.+.+.+.+++++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~--------~~------------d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP--------GE------------DEDIAHILREKLENDGVKIF 229 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc--------cc------------cHHHHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999999999999875321 00 00000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|+.++... .. +.+..+ +.. .++.+|.|++|+| ..|+..
T Consensus 230 ~~~~V~~i~~~~--~~--v~~~~~-g~~---~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 230 TGAALKGLNSYK--KQ--ALFEYE-GSI---QEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred ECCEEEEEEEcC--CE--EEEEEC-Cce---EEEEeCEEEEecC--CccCCC
Confidence 999999998654 43 333222 111 4799999999999 565543
No 197
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=4.1e-07 Score=88.77 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=72.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...+ + ......+.+.+.+.+++++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-----d---------------~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-----D---------------AEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-----C---------------HHHHHHHHHHHHHCCCEEE
Confidence 5689999999999999999999999999999876432100 0 0000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|+.++... +.+.+++...++.. .++.+|.||+|+| .+|+..
T Consensus 232 ~~~~v~~i~~~~--~~~~v~~~~~~g~~---~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 232 TGTKVESIDDNG--SKVTVTVSKKDGKA---QELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred ECCEEEEEEEeC--CeEEEEEEecCCCe---EEEEeCEEEECcC--cccCCC
Confidence 999999998654 44445554212222 4799999999999 555543
No 198
>PRK06370 mercuric reductase; Validated
Probab=98.42 E-value=4.7e-07 Score=88.33 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=72.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.... + ......+.+.+.+.+++++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-----~---------------~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-----D---------------EDVAAAVREILEREGIDVR 230 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-----C---------------HHHHHHHHHHHHhCCCEEE
Confidence 5789999999999999999999999999999987542100 0 0000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|.+++..+ +...|++...++ . .++.+|.||+|+| .+|+..
T Consensus 231 ~~~~V~~i~~~~--~~~~v~~~~~~~-~---~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 231 LNAECIRVERDG--DGIAVGLDCNGG-A---PEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred eCCEEEEEEEcC--CEEEEEEEeCCC-c---eEEEeCEEEECcC--CCcCCC
Confidence 999999998765 333454432211 1 5799999999999 555543
No 199
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.41 E-value=3.2e-06 Score=82.12 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=36.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQ----GVPFIILERANCIASLW 58 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~~gg~w 58 (408)
..++|+|||||.|||+||.+|.+. |.+|+|+|+.+.+||..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 357899999999999999999996 68999999999999843
No 200
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.39 E-value=4.6e-07 Score=88.40 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=71.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+... ++ ......+.+.+.+.+++++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----~d---------------~~~~~~l~~~l~~~gI~v~ 234 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-----LD---------------DEISDALSYHLRDSGVTIR 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-----CC---------------HHHHHHHHHHHHHcCCEEE
Confidence 578999999999999999999999999999998754210 00 0000011222335588999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.+++|+.++..+ +.+.+++.++ .++.+|.|++|+| .+|+.
T Consensus 235 ~~~~v~~i~~~~--~~~~v~~~~g-------~~i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 235 HNEEVEKVEGGD--DGVIVHLKSG-------KKIKADCLLYANG--RTGNT 274 (461)
T ss_pred ECCEEEEEEEeC--CeEEEEECCC-------CEEEeCEEEEeec--CCccc
Confidence 999999998655 4455655443 4799999999999 55554
No 201
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=7.6e-07 Score=86.86 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=70.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+|+|+.+.+...+ + ......+.+.+.+. ++++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~-----d---------------~~~~~~~~~~l~~~-v~i~ 232 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA-----D---------------KDIVKVFTKRIKKQ-FNIM 232 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC-----C---------------HHHHHHHHHHHhhc-eEEE
Confidence 4789999999999999999999999999999987542100 0 00000111122233 7788
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|+.++..+ +...+++.++++.+ .++.+|.||+|+| .+|+..
T Consensus 233 ~~~~v~~i~~~~--~~~~v~~~~~~~~~---~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 233 LETKVTAVEAKE--DGIYVTMEGKKAPA---EPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred cCCEEEEEEEcC--CEEEEEEEeCCCcc---eEEEeCEEEEeec--ccccCC
Confidence 889999998655 44446555443323 5799999999999 565544
No 202
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.39 E-value=2.5e-06 Score=83.13 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=32.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
|+||+|||||.||++||..+++.|.+|+|+||...
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46999999999999999999999999999999754
No 203
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.38 E-value=7.3e-07 Score=89.57 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=34.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||+|||||..|.++|+.|+++|++|+|||+++...|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 48999999999999999999999999999999854333
No 204
>PRK07208 hypothetical protein; Provisional
Probab=98.37 E-value=6.1e-07 Score=88.05 Aligned_cols=44 Identities=32% Similarity=0.522 Sum_probs=39.9
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNR 61 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~ 61 (408)
.+++|+|||||++||+||..|+++|++|+|+|+.+.+||.+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 35689999999999999999999999999999999999976543
No 205
>PRK06116 glutathione reductase; Validated
Probab=98.36 E-value=6.9e-07 Score=86.85 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=72.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+ +. .....+.+.+.+.+++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~---------------~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF-----DP---------------DIRETLVEEMEKKGIRLH 226 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc-----CH---------------HHHHHHHHHHHHCCcEEE
Confidence 4789999999999999999999999999999876532110 00 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|.+++..++ +.+.+++.++ .++.+|.||+|+| .+|+..
T Consensus 227 ~~~~V~~i~~~~~-g~~~v~~~~g-------~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 227 TNAVPKAVEKNAD-GSLTLTLEDG-------ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred CCCEEEEEEEcCC-ceEEEEEcCC-------cEEEeCEEEEeeC--CCcCCC
Confidence 9999999987542 3355666543 5789999999999 555544
No 206
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.36 E-value=1.1e-06 Score=84.62 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
+||||||+|.||++||..+. .|.+|+|+||.+..+|
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 59999999999999999985 6999999999876665
No 207
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=5.4e-07 Score=87.23 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=37.8
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
+..++|+|||||.|||+||+.|.+.|++|+|+|..+.+||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3467999999999999999999999999999999999998
No 208
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.34 E-value=2e-06 Score=82.89 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=31.2
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 209
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=1.2e-06 Score=85.45 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=71.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+++|+.+.+... .+ ......+.+.+.+.+++++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-----~d---------------~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-----TD---------------TETAKTLQKALTKQGMKFK 233 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----CC---------------HHHHHHHHHHHHhcCCEEE
Confidence 578999999999999999999999999999987753210 00 0000011223335589999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecC-CCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSS-DSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~-~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.+++|.+++..+ +...+++.... +.. ..+.+|.|++|+| ..|+.
T Consensus 234 ~~~~V~~i~~~~--~~v~v~~~~~~~g~~---~~i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 234 LGSKVTGATAGA--DGVSLTLEPAAGGAA---ETLQADYVLVAIG--RRPYT 278 (466)
T ss_pred ECcEEEEEEEcC--CeEEEEEEEcCCCce---eEEEeCEEEEccC--Ccccc
Confidence 999999998654 34445444211 222 5799999999999 55554
No 210
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.33 E-value=6.1e-06 Score=82.88 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=40.4
Q ss_pred CCcchhhhhcccc-cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 4 SFITNDEFLSNRC-IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
+|.+..-+-+... ...+||+|||||.||++||..+++.|.+|+|+||....+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 13 TFFSGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccccchhhhcccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 3444444444321 1246999999999999999999999999999999876555
No 211
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=3.7e-06 Score=84.04 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=33.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIAS 56 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg 56 (408)
..+||+|||||.||++||..+++.| .+|+|+||....+|
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 3469999999999999999999874 89999999875553
No 212
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.33 E-value=7.5e-07 Score=86.36 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+++++.+.+...+ + . .....+.+.+.+.+++++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-----d-------~--------~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGF-----D-------D--------DMRALLARNMEGRGIRIH 225 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCccc-----C-------H--------HHHHHHHHHHHHCCCEEE
Confidence 5689999999999999999999999999999877532100 0 0 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.+++|.+++..+ +.+.+++.++ .++.+|.||+|+| ..|+.
T Consensus 226 ~~~~v~~i~~~~--~~~~v~~~~g-------~~i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 226 PQTSLTSITKTD--DGLKVTLSHG-------EEIVADVVLFATG--RSPNT 265 (446)
T ss_pred eCCEEEEEEEcC--CeEEEEEcCC-------cEeecCEEEEeeC--CCcCC
Confidence 999999998654 3445665443 5799999999999 55554
No 213
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.33 E-value=4e-06 Score=82.13 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+||+|||||++|+.+|..+++.|.+|+|+|++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 5899999999999999999999999999998743
No 214
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=2.7e-06 Score=84.69 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=34.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 35999999999999999999999999999999865444
No 215
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=76.57 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=32.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..+|+|||||..|+++|.+|+++|.+++++|+-+-
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 35899999999999999999999999999999763
No 216
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.33 E-value=2.1e-06 Score=85.09 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=34.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 47999999999999999999999999999999886654
No 217
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.32 E-value=2.5e-06 Score=83.22 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~g 55 (408)
.+||+|||||..|+++|++|++. |.+|+|+||.+.++
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 46999999999999999999986 78999999987543
No 218
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=3.3e-06 Score=84.53 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=33.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++.|.+|+||||....+|
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 46999999999999999999999999999999754443
No 219
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.32 E-value=5e-06 Score=83.19 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.9
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875543
No 220
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.32 E-value=1.6e-06 Score=85.02 Aligned_cols=36 Identities=33% Similarity=0.591 Sum_probs=32.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.||+|||+|.||++||..+++.|. |+|+||.+..+|
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 599999999999999999999998 999999975554
No 221
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.32 E-value=1.6e-06 Score=85.22 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=33.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||||||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4599999999999999999987 899999999876555
No 222
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=2.1e-06 Score=85.91 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=34.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+.||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 456999999999999999999999999999999875543
No 223
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.32 E-value=2.7e-06 Score=85.50 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=34.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 47999999999999999999999999999999875554
No 224
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1.7e-06 Score=87.10 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||+|||+|.||++||..+++.|.+|+|+||...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4699999999999999999999999999999876543
No 225
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.30 E-value=1.1e-06 Score=85.67 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=71.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+..... ......+.+.+.+.+++++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d--------------------~~~~~~l~~~L~~~gV~i~ 236 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGED--------------------ADAAEVLEEVFARRGMTVL 236 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCC--------------------HHHHHHHHHHHHHCCcEEE
Confidence 46899999999999999999999999999998775421100 0000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|..++..+ +.+.+++.++ .++.+|.|++|+| .+|+..
T Consensus 237 ~~~~v~~v~~~~--~~~~v~~~~g-------~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 237 KRSRAESVERTG--DGVVVTLTDG-------RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred cCCEEEEEEEeC--CEEEEEECCC-------cEEEecEEEEeec--CCcCCC
Confidence 999999998655 4444555443 5799999999999 555544
No 226
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.29 E-value=4.8e-06 Score=80.96 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=31.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-C-CCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-G-VPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g-~~v~lie~~~~ 53 (408)
.+||+|||||..|+++|+.|++. + .+|+|+||.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 58999999999999999999997 4 69999999864
No 227
>PRK07846 mycothione reductase; Reviewed
Probab=98.29 E-value=1.2e-06 Score=84.86 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=69.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+... .+ ..+ ...+.+. .+.+++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-----~d-------~~~--------~~~l~~l-~~~~v~i~ 224 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-----LD-------DDI--------SERFTEL-ASKRWDVR 224 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cC-------HHH--------HHHHHHH-HhcCeEEE
Confidence 578999999999999999999999999999998753210 00 000 0000011 12367888
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|++++..+ +...+++.++ .++.+|.|++|+| .+|+.+
T Consensus 225 ~~~~v~~i~~~~--~~v~v~~~~g-------~~i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 225 LGRNVVGVSQDG--SGVTLRLDDG-------STVEADVLLVATG--RVPNGD 265 (451)
T ss_pred eCCEEEEEEEcC--CEEEEEECCC-------cEeecCEEEEEEC--CccCcc
Confidence 999999998654 4444555432 5799999999999 555544
No 228
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.29 E-value=4.8e-06 Score=77.34 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=36.6
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
+..||+|||+|.+||.+|..|.+.|++|+|+|.++.+||
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 456999999999999999999999999999999998887
No 229
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.28 E-value=5.7e-07 Score=83.83 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=84.7
Q ss_pred CCcEEECCChHHHHHHHHHHHcC-------------CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQG-------------VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDF 86 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g-------------~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (408)
-+|+|||||+.|+.+|..|+.+- .+|+|+|+.+.+--. ++. . .....
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-----~~~-------~--------l~~~a 215 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-----FPP-------K--------LSKYA 215 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-----CCH-------H--------HHHHH
Confidence 47999999999999999998641 389999998864210 000 0 00011
Q ss_pred CCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCCCCCC-cceeeeec
Q 035488 87 PRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFEGLQH-FEGNVMHA 165 (408)
Q Consensus 87 ~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~g~~~-~~~~~~~~ 165 (408)
.+++++.|+++++++.|++++.+. |++.+++ .++.|+.+|=|+|....|..-.+-+.+. -.++++..
T Consensus 216 ~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~------~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~ 283 (405)
T COG1252 216 ERALEKLGVEVLLGTPVTEVTPDG------VTLKDGE------EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVN 283 (405)
T ss_pred HHHHHHCCCEEEcCCceEEECCCc------EEEccCC------eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeC
Confidence 234457899999999999998766 8887752 2599999999999766665545322332 23444444
Q ss_pred cCCCCCCCCCCCeEEEEcc
Q 035488 166 GDYKSGASYRGKRVLVVGC 184 (408)
Q Consensus 166 ~~~~~~~~~~~~~v~VvG~ 184 (408)
..+. . .....|.++|-
T Consensus 284 ~~L~-~--~~~~~IFa~GD 299 (405)
T COG1252 284 PTLQ-V--PGHPDIFAAGD 299 (405)
T ss_pred CCcc-c--CCCCCeEEEec
Confidence 3322 1 12345777764
No 230
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.28 E-value=7.1e-07 Score=85.20 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=69.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.+.. .+. .....+.+.+.+.+++++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----~~~---------------~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----APP---------------PVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----cCH---------------HHHHHHHHHHHHCCCEEE
Confidence 4689999999999999999999999999999987542110 000 000011122235588999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
++++|++++. + +.+.+++.++ ..+.+|.||+|+| ..|+
T Consensus 205 ~~~~V~~i~~-~--~~~~v~l~~g-------~~i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 205 LNNAIEHVVD-G--EKVELTLQSG-------ETLQADVVIYGIG--ISAN 242 (396)
T ss_pred eCCeeEEEEc-C--CEEEEEECCC-------CEEECCEEEECCC--CChh
Confidence 9999999875 2 3444666553 5799999999999 4444
No 231
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.27 E-value=4.7e-06 Score=80.01 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=31.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-CC-CEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-GV-PFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g~-~v~lie~~~ 52 (408)
.+||+|||||.+|+++|++|++. |. +|+|+|+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 46999999999999999999995 85 899999975
No 232
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.27 E-value=1.3e-06 Score=84.74 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=70.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+...+ + ......+.+.+.+.+++++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-----~---------------~~~~~~l~~~l~~~gV~v~ 217 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-----D---------------RDIADNIATILRDQGVDII 217 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-----C---------------HHHHHHHHHHHHhCCCEEE
Confidence 5689999999999999999999999999999976432100 0 0000011223445689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
++++|.+++..+ +.+.++..+ .++.+|.|++|+| ..|+.
T Consensus 218 ~~~~v~~i~~~~--~~v~v~~~~--------g~i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 218 LNAHVERISHHE--NQVQVHSEH--------AQLAVDALLIASG--RQPAT 256 (441)
T ss_pred eCCEEEEEEEcC--CEEEEEEcC--------CeEEeCEEEEeec--CCcCC
Confidence 999999998765 444444332 3688999999999 55554
No 233
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.27 E-value=1.3e-06 Score=77.77 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=35.9
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
.+.+|+|||+|++||+||..|.++ .+|+|+|.++.+||+-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 356899999999999999999987 7999999999999843
No 234
>PLN02507 glutathione reductase
Probab=98.26 E-value=1.4e-06 Score=85.42 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=70.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+|+++.+.+... ++. .....+.+.+.+.+++++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-----~d~---------------~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-----FDD---------------EMRAVVARNLEGRGINLH 262 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-----cCH---------------HHHHHHHHHHHhCCCEEE
Confidence 578999999999999999999999999999987643100 000 000011122345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|.+++..+ +...+++.++ .++.+|.|++|+| .+|+..
T Consensus 263 ~~~~V~~i~~~~--~~~~v~~~~g-------~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 263 PRTNLTQLTKTE--GGIKVITDHG-------EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred eCCEEEEEEEeC--CeEEEEECCC-------cEEEcCEEEEeec--CCCCCC
Confidence 999999998654 4444554332 4799999999999 555543
No 235
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.26 E-value=1.7e-06 Score=83.85 Aligned_cols=103 Identities=18% Similarity=0.084 Sum_probs=71.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+ +. .....+.+.+.+.+++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~-----d~---------------~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF-----DS---------------MISETITEEYEKEGINVH 225 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc-----CH---------------HHHHHHHHHHHHcCCEEE
Confidence 5789999999999999999999999999999987532100 00 000011223335589999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.++.|+.++.... +...+++.++ + ..+.+|.|++|+| ..|+..
T Consensus 226 ~~~~v~~i~~~~~-~~~~v~~~~g---~---~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 226 KLSKPVKVEKTVE-GKLVIHFEDG---K---SIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred cCCEEEEEEEeCC-ceEEEEECCC---c---EEEEcCEEEEeeC--CCcCcc
Confidence 9999999986542 3344555432 1 4799999999999 555543
No 236
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.26 E-value=8.1e-06 Score=76.24 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=42.3
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+.++.++++++|++|.+..+ +.|.|++.+..+++ ..++++++|+|..|..+-+
T Consensus 194 ~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~--~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 194 QKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGE--KREVRAKFVFVGAGGGALP 246 (488)
T ss_pred CCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCC--eEEEECCEEEECCchHhHH
Confidence 44788999999999999874 67999987754433 3789999999999975533
No 237
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.25 E-value=4e-06 Score=84.13 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=33.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~ 54 (408)
.+||+|||||.||++||..+++. |.+|+||||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 46999999999999999999998 9999999998643
No 238
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.24 E-value=3.3e-06 Score=84.57 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.9
Q ss_pred cEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 22 PVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
|||||+|.||++||..+++.|.+|+|+||...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998744
No 239
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=4.3e-06 Score=83.82 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=34.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||||.||++||..+++.|.+|+|+||....+|
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 46999999999999999999999999999999864433
No 240
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=6.6e-06 Score=82.89 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||||||+|.||++||..+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4699999999999999999999999999999987554
No 241
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.23 E-value=1.3e-06 Score=85.15 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=36.8
Q ss_pred CcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQN 60 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~ 60 (408)
+|+|||||+|||+||..|++.| ++|+|+|+++.+||..+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 6999999999999999999988 899999999999996543
No 242
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.22 E-value=9.7e-07 Score=85.36 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=68.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...+. . .....+.+.+++.+++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d-----~---------------~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMD-----A---------------DMNQPILDELDKREIPYR 207 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcC-----H---------------HHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999999999999875421100 0 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
++++|.+++. . .|++.++ ..+.+|.|++|+| .+|+.
T Consensus 208 ~~~~v~~i~~----~--~v~~~~g-------~~~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 208 LNEEIDAING----N--EVTFKSG-------KVEHYDMIIEGVG--THPNS 243 (438)
T ss_pred ECCeEEEEeC----C--EEEECCC-------CEEEeCEEEECcC--CCcCh
Confidence 9999999863 2 2666543 4789999999999 55554
No 243
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=9.3e-06 Score=81.20 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=34.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 35999999999999999999999999999999865543
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.22 E-value=2.2e-06 Score=83.20 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=69.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||||+.|+.+|..|++.|.+|++|++.+.+... .+ ..+ ...+.++. +.+++++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----~d-------~~~--------~~~l~~~~-~~gI~i~ 227 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----LD-------EDI--------SDRFTEIA-KKKWDIR 227 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----cC-------HHH--------HHHHHHHH-hcCCEEE
Confidence 578999999999999999999999999999997753210 00 000 00000111 2367888
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|.+++..+ +...+++.++ .++.+|.|++|+| .+|+..
T Consensus 228 ~~~~V~~i~~~~--~~v~v~~~~g-------~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 228 LGRNVTAVEQDG--DGVTLTLDDG-------STVTADVLLVATG--RVPNGD 268 (452)
T ss_pred eCCEEEEEEEcC--CeEEEEEcCC-------CEEEcCEEEEeec--cCcCCC
Confidence 899999998655 4444555443 4799999999999 555543
No 245
>PRK14694 putative mercuric reductase; Provisional
Probab=98.22 E-value=1.9e-06 Score=84.17 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||+|+.|+.+|..|++.|.+|+++++...++. .+ ......+.+.+.+.+++++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~------~~---------------~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ------ED---------------PAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC------CC---------------HHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999997532210 00 0000112233345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|..++.++ +.+.+.+.+ .++.+|.||+|+| ..|+..
T Consensus 237 ~~~~v~~i~~~~--~~~~v~~~~--------~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 237 KQTQASEVDYNG--REFILETNA--------GTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred eCCEEEEEEEcC--CEEEEEECC--------CEEEeCEEEEccC--CCCCcC
Confidence 999999998655 444444332 3699999999999 555543
No 246
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=6.2e-06 Score=80.47 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=69.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+ +......+.+.+.+. ++++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~--------------------d~~~~~~~~~~l~~~-I~i~ 227 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE--------------------DPEVSKQAQKILSKE-FKIK 227 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch--------------------hHHHHHHHHHHHhhc-cEEE
Confidence 5789999999999999999999999999999987542100 000000112233344 7888
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++|.+++.... ...+++..++ .+ .++.+|.|++|+| ..|+..
T Consensus 228 ~~~~v~~i~~~~~-~~v~~~~~~~--~~---~~i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 228 LGAKVTSVEKSGD-EKVEELEKGG--KT---ETIEADYVLVATG--RRPNTD 271 (460)
T ss_pred cCCEEEEEEEcCC-ceEEEEEcCC--ce---EEEEeCEEEEccC--CccCCC
Confidence 8999999986542 2333332222 22 5799999999999 566654
No 247
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=2.3e-06 Score=84.96 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=31.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..||||||+|.||++||..+ +.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 46999999999999999999 99999999999764
No 248
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=5e-06 Score=83.23 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG---VPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g---~~v~lie~~~~~gg 56 (408)
.+||+|||+|.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 359999999999999999999998 89999999876554
No 249
>PLN02815 L-aspartate oxidase
Probab=98.18 E-value=4.4e-06 Score=83.26 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=34.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++.| +|+|+||....+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 469999999999999999999999 9999999886665
No 250
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.18 E-value=1.7e-06 Score=83.55 Aligned_cols=98 Identities=27% Similarity=0.377 Sum_probs=68.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-CccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA-SLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g-g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+. ..+ + . .....+.+.+.+.++++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~-----~-------~--------~~~~~~~~~l~~~gV~v 196 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF-----D-------E--------EMNQIVEEELKKHEINL 196 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc-----C-------H--------HHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999877531 000 0 0 00001122334568999
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+++++|.+++... . . +.+.++ .++.+|.||+|+| ..|..
T Consensus 197 ~~~~~v~~i~~~~--~-~-v~~~~g-------~~i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 197 RLNEEVDSIEGEE--R-V-KVFTSG-------GVYQADMVILATG--IKPNS 235 (427)
T ss_pred EeCCEEEEEecCC--C-E-EEEcCC-------CEEEeCEEEECCC--ccCCH
Confidence 9999999997643 3 2 344443 4799999999999 55543
No 251
>PRK08275 putative oxidoreductase; Provisional
Probab=98.17 E-value=7.7e-06 Score=81.45 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~ 54 (408)
.+||+|||||.||++||..+++. |.+|+|+||....
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 46999999999999999999987 6899999998753
No 252
>PRK07233 hypothetical protein; Provisional
Probab=98.17 E-value=2.1e-06 Score=83.22 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=36.6
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ 59 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~ 59 (408)
+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 589999999999999999999999999999999999543
No 253
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.17 E-value=1.2e-05 Score=73.57 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=30.0
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+++|..|.+.|.+|+++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 58999999999999999999999999999765
No 254
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.16 E-value=8.7e-06 Score=71.78 Aligned_cols=39 Identities=31% Similarity=0.537 Sum_probs=35.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
+..|||||+|.||++|+..+...|-.|+++|+...+||.
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 446999999999999999999998889999999988873
No 255
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.2e-06 Score=80.98 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=36.1
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
++|+|+|||.|||+||..|++.|++|+|+|.++.+||.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 37999999999999999999999999999999999983
No 256
>PRK14727 putative mercuric reductase; Provisional
Probab=98.15 E-value=3.2e-06 Score=82.74 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=68.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+.. .+. .....+.+.+.+.+++++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~------~d~---------------~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR------EDP---------------LLGETLTACFEKEGIEVL 246 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc------chH---------------HHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999999999999997532210 000 000011223345688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
++++|..++..+ +.+.+...+ .++.+|.||+|+| ..|+.
T Consensus 247 ~~~~V~~i~~~~--~~~~v~~~~--------g~i~aD~VlvA~G--~~pn~ 285 (479)
T PRK14727 247 NNTQASLVEHDD--NGFVLTTGH--------GELRAEKLLISTG--RHANT 285 (479)
T ss_pred cCcEEEEEEEeC--CEEEEEEcC--------CeEEeCEEEEccC--CCCCc
Confidence 999999998655 444454433 3689999999999 45443
No 257
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.14 E-value=2.6e-06 Score=79.65 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=36.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
++||+|||||++|+++|..|++.|.+|+|+|+.+.+||.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 358999999999999999999999999999999999883
No 258
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.14 E-value=4.8e-06 Score=81.34 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=69.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
..+++|||||+.|+.+|..|++.|.+|+++++...+. . ++. .....+.+.+.+.+++++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~-----~d~---------------~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-G-----FDQ---------------DCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-c-----cCH---------------HHHHHHHHHHHHcCCEEE
Confidence 4689999999999999999999999999999742111 0 000 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
+++.+..++..+ +...|+..++.+ . .++.+|.|++|+| ..|+..
T Consensus 239 ~~~~v~~v~~~~--~~~~v~~~~~~~-~---~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 239 RQFVPIKVEQIE--AKVKVTFTDSTN-G---IEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred eCceEEEEEEcC--CeEEEEEecCCc-c---eEEEeCEEEEEec--CCcCCC
Confidence 999988887654 344455544321 1 4799999999999 555543
No 259
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.13 E-value=3.5e-06 Score=82.20 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=68.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ---GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDI 95 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~---g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
.++|+|||||+.|+.+|..+... |.+|+|+++.+.+... ++. .....+.+.+++.++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-----~d~---------------~~~~~l~~~L~~~GI 246 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-----FDS---------------TLRKELTKQLRANGI 246 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-----cCH---------------HHHHHHHHHHHHcCC
Confidence 57899999999999999766554 8999999988753210 000 000011223345689
Q ss_pred cccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 96 NPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 96 ~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+++.++.|.++....+ +...+++.++ .++.+|.|++|+| .+|+.
T Consensus 247 ~i~~~~~v~~i~~~~~-~~~~v~~~~g-------~~i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 247 NIMTNENPAKVTLNAD-GSKHVTFESG-------KTLDVDVVMMAIG--RVPRT 290 (486)
T ss_pred EEEcCCEEEEEEEcCC-ceEEEEEcCC-------CEEEcCEEEEeeC--CCcCc
Confidence 9999999999986542 3344555433 4799999999999 55554
No 260
>PLN02268 probable polyamine oxidase
Probab=98.13 E-value=2.7e-06 Score=82.40 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=36.4
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
++|+|||||.+||+||+.|.+.|++|+|+|+++.+||..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999999999843
No 261
>PRK13748 putative mercuric reductase; Provisional
Probab=98.12 E-value=3.5e-06 Score=84.37 Aligned_cols=99 Identities=18% Similarity=0.138 Sum_probs=69.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+.. .+. .....+.+.+.+.+++++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------~d~---------------~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR------EDP---------------AIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc------cCH---------------HHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999998542210 000 000011223345688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+++|..++..+ +.+.+.+.+ .++.+|.|++|+| ..|+..
T Consensus 329 ~~~~v~~i~~~~--~~~~v~~~~--------~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 329 EHTQASQVAHVD--GEFVLTTGH--------GELRADKLLVATG--RAPNTR 368 (561)
T ss_pred cCCEEEEEEecC--CEEEEEecC--------CeEEeCEEEEccC--CCcCCC
Confidence 999999998654 444454433 3689999999999 555543
No 262
>PTZ00058 glutathione reductase; Provisional
Probab=98.12 E-value=4.4e-06 Score=82.55 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=70.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+++++.+.+... ++. .....+.+.+.+.+++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-----~d~---------------~i~~~l~~~L~~~GV~i~ 296 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-----FDE---------------TIINELENDMKKNNINII 296 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-----CCH---------------HHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999999999999997643210 000 000011223335589999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.+.+|.+++.... +...+...++ . .++.+|.|++|+| ..|+..
T Consensus 297 ~~~~V~~I~~~~~-~~v~v~~~~~---~---~~i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 297 THANVEEIEKVKE-KNLTIYLSDG---R---KYEHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred eCCEEEEEEecCC-CcEEEEECCC---C---EEEECCEEEECcC--CCCCcc
Confidence 9999999986542 2333433221 1 4799999999999 555543
No 263
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.11 E-value=9.3e-06 Score=80.99 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=33.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg 56 (408)
.+||+|||||.||+.||..+++. |.+|+|+||....+|
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 35899999999999999999987 589999999876655
No 264
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=7.5e-06 Score=82.18 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=70.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCC-CCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPR-VPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 97 (408)
.++|+|||||+.|+.+|..+++.|.+|+|+|+.+.+... .+. . ....+.+ +..+.++++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-----~d~-------e--------is~~l~~~ll~~~GV~I 371 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-----LDA-------D--------VAKYFERVFLKSKPVRV 371 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----CCH-------H--------HHHHHHHHHhhcCCcEE
Confidence 468999999999999999999999999999998754210 000 0 0000011 122458999
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecC-CC-C------cceEEEEeCEEEEeeCCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSS-DS-S------FCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~-~~-~------~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
+.++.|..++...+.....+++.+.. +. . ....++.+|.|++|+| .+|+..
T Consensus 372 ~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 372 HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTN 430 (659)
T ss_pred EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCc
Confidence 99999999986542223444443211 00 0 0013799999999999 566654
No 265
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.11 E-value=2.3e-06 Score=80.34 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=35.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||+|||||..|..||..++-+|+++.++|+++...|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 58999999999999999999999999999999976554
No 266
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.11 E-value=5.3e-06 Score=80.57 Aligned_cols=100 Identities=24% Similarity=0.270 Sum_probs=67.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..+++.|.+|+++++.+.+.... ++ .. ....+.+.+.+.+++++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~----~~-------~~--------~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDS----FD-------KE--------ITDVMEEELRENGVELH 209 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchh----cC-------HH--------HHHHHHHHHHHCCCEEE
Confidence 4689999999999999999999999999999876432100 00 00 00011122335688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
++++|.+++..+ +...+.+.+ .++.+|.||+|+| ..|+.
T Consensus 210 ~~~~v~~i~~~~--~~~~v~~~~--------~~i~~d~vi~a~G--~~p~~ 248 (444)
T PRK09564 210 LNEFVKSLIGED--KVEGVVTDK--------GEYEADVVIVATG--VKPNT 248 (444)
T ss_pred cCCEEEEEecCC--cEEEEEeCC--------CEEEcCEEEECcC--CCcCH
Confidence 999999996533 333344332 4799999999999 44443
No 267
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.10 E-value=2.8e-06 Score=81.60 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=72.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||+|+.|+.+|..|+++|++|+++|+.+.+++.... ......+.+.+..++++++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------~~~~~~~~~~l~~~gi~~~ 196 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------PEVAEELAELLEKYGVELL 196 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-------------------HHHHHHHHHHHHHCCcEEE
Confidence 479999999999999999999999999999999987643210 0111122334445678888
Q ss_pred ccceeEEEEEcCCCCcEE-EEEeecCCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWR-IKTISSSDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
++..+..++......... +...++ ..+.+|.+++++| .+|+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 197 LGTKVVGVEGKGNTLVVERVVGIDG-------EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred eCCceEEEEcccCcceeeEEEEeCC-------cEEEeeEEEEeec--cccc
Confidence 999999999765211111 233332 5899999999999 5553
No 268
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.10 E-value=4.8e-06 Score=81.72 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=69.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||||+.|+.+|..|++.|.+|+|+++...+. . ++. .....+.+.+.+.+++++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~-----~d~---------------~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-G-----FDR---------------QCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-c-----CCH---------------HHHHHHHHHHHHcCCEEE
Confidence 4689999999999999999999999999998743211 0 000 000011223345688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.++.+..+.... +...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 241 ~~~~v~~v~~~~--~~~~v~~~~g-------~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 241 EGVVPINIEKMD--DKIKVLFSDG-------TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred cCCeEEEEEEcC--CeEEEEECCC-------CEEEcCEEEEeeC--CCCCcc
Confidence 999998888654 3344555443 4689999999999 555543
No 269
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.10 E-value=3.8e-06 Score=82.07 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=37.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ----GVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~~gg~w~ 59 (408)
++||+|||||++||+||..|+++ |++|+|+|+++.+||.-+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 35899999999999999999999 999999999999999533
No 270
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.10 E-value=2.5e-06 Score=77.64 Aligned_cols=44 Identities=34% Similarity=0.432 Sum_probs=38.2
Q ss_pred ccccccCCcEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCCc
Q 035488 14 NRCIWVNGPVIVGAGPSGLAVAAGLKNQ------GVPFIILERANCIASL 57 (408)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~~A~~l~~~------g~~v~lie~~~~~gg~ 57 (408)
+++...+||+|||||||||+||++|++. .++|+|+||...+||+
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 3455678999999999999999999986 3799999999998874
No 271
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.10 E-value=4.5e-06 Score=82.75 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=33.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||||||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCC
Confidence 4699999999999999999974 999999999876655
No 272
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.10 E-value=4.5e-06 Score=82.16 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
+||+|||||++||+||..|++.|++|+|+|+++.+||.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 48999999999999999999999999999999999984
No 273
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.10 E-value=3.4e-06 Score=79.94 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=41.1
Q ss_pred CcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCccCCCCCCCeee
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIASLWQNRTYDRLKL 68 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg~w~~~~~~~~~~ 68 (408)
+|+|||||++||+||..|++++ ++++|+|+++.+||..+.....+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~ 51 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLF 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEE
Confidence 6999999999999999999999 99999999999999766544444443
No 274
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.09 E-value=9.6e-06 Score=81.06 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=33.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG--VPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~gg 56 (408)
.+||+|||+|.||++||..+++.| .+|+|+||....+|
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 359999999999999999999874 79999999876554
No 275
>PLN02576 protoporphyrinogen oxidase
Probab=98.08 E-value=5e-06 Score=82.00 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=37.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ-GVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~~gg~w~ 59 (408)
.++|+|||||++||+||..|++. |++|+|+|+.+.+||...
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 45899999999999999999999 999999999999999433
No 276
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.07 E-value=1.1e-05 Score=80.41 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.6
Q ss_pred CcEEECCChHHHHHHHHHH----HcCCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLK----NQGVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~----~~g~~v~lie~~~~ 53 (408)
||||||||.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 277
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.07 E-value=3.9e-06 Score=76.83 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
+.+|+|||||.+|+++|..|++.|++|+|+|+...+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 3579999999999999999999999999999976553
No 278
>PLN02676 polyamine oxidase
Probab=98.06 E-value=6.6e-06 Score=80.38 Aligned_cols=49 Identities=29% Similarity=0.497 Sum_probs=42.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCee
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLK 67 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~ 67 (408)
.+||+|||||++||+||++|++.|. +|+|+|+.+.+||.+....+.+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~ 75 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVS 75 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeE
Confidence 5799999999999999999999998 699999999999976654454443
No 279
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.06 E-value=5.1e-06 Score=82.02 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=34.6
Q ss_pred cEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 22 PVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
|+|||||.+||+||..|++.|++|+|+|+++.+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 699999999999999999999999999999999983
No 280
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.05 E-value=4.2e-06 Score=81.74 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=36.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ------GVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~------g~~v~lie~~~~~gg~w~ 59 (408)
|++|+|||||++||+||..|++. |.+|+|+|+++.+||..+
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 45899999999999999999986 379999999999999533
No 281
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.04 E-value=6.4e-06 Score=76.64 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=36.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~ 59 (408)
..+|||||||.||++||.+|.+.|. +++|+|..+.+||-.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 4589999999999999999998875 8999999999998443
No 282
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=6.2e-06 Score=72.81 Aligned_cols=40 Identities=33% Similarity=0.373 Sum_probs=37.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
++|++|||+|.+|+.+|..|+++|.+|+|+||.+++||.-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 4689999999999999999999999999999999999864
No 283
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.01 E-value=2.4e-05 Score=81.07 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=71.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+-.. ..+. .....+.+.+++.+++++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~----~ld~---------------~~~~~l~~~L~~~GV~v~ 205 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE----QLDQ---------------MGGEQLRRKIESMGVRVH 205 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh----hcCH---------------HHHHHHHHHHHHCCCEEE
Confidence 468999999999999999999999999999987643100 0000 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.++.+..+..........|++.++ .++.+|.||+|+| .+|+.
T Consensus 206 ~~~~v~~I~~~~~~~~~~v~~~dG-------~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 206 TSKNTLEIVQEGVEARKTMRFADG-------SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred cCCeEEEEEecCCCceEEEEECCC-------CEEEcCEEEECCC--cccCc
Confidence 999999997543223334555554 5799999999999 55553
No 284
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.01 E-value=8.1e-06 Score=80.33 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=36.2
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
+||+|||||.+|+++|..|++.|++|+|+||+..+||.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 38 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGS 38 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCc
Confidence 48999999999999999999999999999999999983
No 285
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=1.5e-05 Score=79.81 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
+||+|||||.||++||..+++. .+|+|+||....+|
T Consensus 6 ~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 6 YDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred ccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 5999999999999999999987 99999999864443
No 286
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.00 E-value=6e-05 Score=67.10 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
++..-+|+|||+|.+|+-+|..|++.|.+|.++.+.+
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3455689999999999999999999999999999876
No 287
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=8.6e-06 Score=77.10 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=31.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+|||||.||+.||..+++.|.+++++--+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 4799999999999999999999999999888763
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.99 E-value=2.2e-05 Score=81.29 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=70.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+-.. ..+. .....+.+.+.+.+++++
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~----~ld~---------------~~~~~l~~~l~~~GV~v~ 200 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----QLDQ---------------TAGRLLQRELEQKGLTFL 200 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh----hcCH---------------HHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999999999999987643100 0000 000011223345689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+++.++.+.... ....|++.++ ..+.+|.||+|+| .+|+.
T Consensus 201 ~~~~v~~i~~~~--~~~~v~~~dG-------~~i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 201 LEKDTVEIVGAT--KADRIRFKDG-------SSLEADLIVMAAG--IRPND 240 (785)
T ss_pred eCCceEEEEcCC--ceEEEEECCC-------CEEEcCEEEECCC--CCcCc
Confidence 999998887543 3444666654 5899999999999 55554
No 289
>PLN02568 polyamine oxidase
Probab=97.99 E-value=8.2e-06 Score=80.43 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=37.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC-----CCEEEEecCCCCCCccCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG-----VPFIILERANCIASLWQN 60 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g-----~~v~lie~~~~~gg~w~~ 60 (408)
.++|+|||||++|++||..|++.| ++|+|+|+.+.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 358999999999999999999987 899999999999996543
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.97 E-value=4.6e-05 Score=73.44 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCc
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSV 210 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~ 210 (408)
...++|+|||+|..|+.+|..|.....+|+++.+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4667999999999999999999776789999988773
No 291
>PRK10262 thioredoxin reductase; Provisional
Probab=97.97 E-value=2.2e-05 Score=72.74 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=70.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ... .....+.+.+.+.+++++
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------~~~---------------~~~~~~~~~l~~~gV~i~ 203 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------AEK---------------ILIKRLMDKVENGNIILH 203 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------CCH---------------HHHHHHHhhccCCCeEEE
Confidence 4689999999999999999999999999999976431 000 000112233445688999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCC-CCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSD-SSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~-~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
.++.++++..... +.-.|++.+... +. ..++.+|.||+|+| ..|+.
T Consensus 204 ~~~~v~~v~~~~~-~~~~v~~~~~~~~~~--~~~i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 204 TNRTLEEVTGDQM-GVTGVRLRDTQNSDN--IESLDVAGLFVAIG--HSPNT 250 (321)
T ss_pred eCCEEEEEEcCCc-cEEEEEEEEcCCCCe--EEEEECCEEEEEeC--CccCh
Confidence 9999999976531 222355554321 11 15799999999999 55544
No 292
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.97 E-value=1.1e-05 Score=78.11 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=27.3
Q ss_pred CcEEECCChHHHHHHHHHHHcC---CCEEEEecCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG---VPFIILERAN 52 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g---~~v~lie~~~ 52 (408)
||+|||||+||..+|..|++.+ ++|+|||+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5999999999999999999998 8999999984
No 293
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.96 E-value=1.7e-06 Score=71.45 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=39.8
Q ss_pred CCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC-ccCC-CCCCCeeeecC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIAS-LWQN-RTYDRLKLHLP 71 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~gg-~w~~-~~~~~~~~~~~ 71 (408)
.||+|||+|.+|+++|+.+.++ +++|.|||..-.+|| .|-. ..+..+....|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKP 132 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKP 132 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcCh
Confidence 4999999999999999999966 589999999877765 6742 23444444444
No 294
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.96 E-value=9.4e-06 Score=79.08 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=35.9
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
+|+|||||++|++||..|++.|++|+|+|+.+.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999999954
No 295
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.93 E-value=6.1e-05 Score=66.87 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+..-+|+|||+|.+|+-+|..|++.|.+|.++.+++
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345579999999999999999999999999999987
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.93 E-value=3.1e-05 Score=75.15 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=66.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||..|+.+|..|++.|.+|+++++.+... .+.. ....+.+.+.|++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---------------------~~~~---~~~~~~l~~~GV~~~ 327 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---------------------MTAR---VEEIAHAEEEGVKFH 327 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---------------------CCCC---HHHHHHHHhCCCEEE
Confidence 4689999999999999999999999999999875310 0000 011122335588888
Q ss_pred ccceeEEEEEcCCCCcEEEEEe---------ec-------CCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTI---------SS-------SDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~---------~~-------~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+++.+..+..+++...-.|++. ++ .+++ ..+.+|.||+|+| ..|..
T Consensus 328 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~---~~i~~D~Vi~AiG--~~p~~ 389 (449)
T TIGR01316 328 FLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE---CKLEADAVIVAIG--NGSNP 389 (449)
T ss_pred eccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCce---EEEECCEEEECCC--CCCCc
Confidence 8888888865432122123332 11 1111 4799999999999 45543
No 297
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.92 E-value=6.8e-05 Score=66.67 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=34.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN--CIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~--~~gg 56 (408)
..||+|||+|.||+.||..|+..|.+|+|+|.+. .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 4689999999999999999999999999999864 4555
No 298
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.92 E-value=3.1e-05 Score=76.48 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=69.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCC-ccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPH-QFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 97 (408)
.++|+|||||+.|+.+|..|+..+.+|+++++.+.+.. . . .+.+.+. +.++++
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~--------~-----------~l~~~l~~~~gV~i 405 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------D--------K-----------VLQDKLKSLPNVDI 405 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------h--------H-----------HHHHHHhcCCCCEE
Confidence 46899999999999999999999999999998764320 0 0 0011111 248899
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
++++.++.+...+. +...|++.+...++ ...+.+|.|++|+| ..|+..
T Consensus 406 ~~~~~v~~i~~~~~-~v~~v~~~~~~~~~--~~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 406 LTSAQTTEIVGDGD-KVTGIRYQDRNSGE--EKQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred EECCeeEEEEcCCC-EEEEEEEEECCCCc--EEEEEcCEEEEEeC--CcCCch
Confidence 99999999976531 22236665542222 15799999999999 555443
No 299
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.91 E-value=1.5e-05 Score=75.56 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=69.1
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecc-cccC--C---ch--HHHHHHHHhh--cchHHHHHHHHHHHH
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPR-EVLG--K---ST--FQLAVLMMKY--FPLWLVDKILLILAR 247 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~-~~~~--~---~~--~~~~~~~~~~--l~~~~~~~~~~~~~~ 247 (408)
+|+|||+|++|+-+|..+++.|.+|.++.|++. +... ...| + ++ .....+...+ -+......+.+.-..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~-~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR-VGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS-S-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc-cccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 589999999999999999999999999999872 2210 0000 0 00 0000000000 000011111111111
Q ss_pred HHhhhhhhcCCCCC-CCCCcccccCCCCCcccChhhhhhhccCCeEEecC--ccEEe--CCe---EEEecCcEEccCEEE
Q 035488 248 LILGNVEKYGLKRP-PTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG--IKKFS--PGK---VELVNGQVLEIDSVV 319 (408)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--i~~~~--~~~---v~~~~g~~~~~D~vi 319 (408)
.+..-+.++|+... ...... .+...+...+.+.+.+.+++.+++++.+ |.++. +++ |.+.++..+.+|.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~-fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRV-FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEE-EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEE-CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEE
Confidence 11112244454321 111111 1122244455566677778889999987 77774 444 555577899999999
Q ss_pred EcCCCCCC
Q 035488 320 LATGYRSN 327 (408)
Q Consensus 320 ~atG~~~~ 327 (408)
+|||-...
T Consensus 160 LAtGG~S~ 167 (409)
T PF03486_consen 160 LATGGKSY 167 (409)
T ss_dssp E----SSS
T ss_pred EecCCCCc
Confidence 99997753
No 300
>PLN02546 glutathione reductase
Probab=97.90 E-value=1.7e-05 Score=78.44 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=68.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+...+ +. .....+.+.+.+.+++++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~-----d~---------------~~~~~l~~~L~~~GV~i~ 311 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF-----DE---------------EVRDFVAEQMSLRGIEFH 311 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc-----CH---------------HHHHHHHHHHHHCCcEEE
Confidence 5789999999999999999999999999999876532100 00 000011122335689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
.++++.++....+ +...+...++ ....+|.|++|+| ..|+..
T Consensus 312 ~~~~v~~i~~~~~-g~v~v~~~~g-------~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 312 TEESPQAIIKSAD-GSLSLKTNKG-------TVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred eCCEEEEEEEcCC-CEEEEEECCe-------EEEecCEEEEeec--cccCCC
Confidence 9999999976432 3333433221 3445899999999 555543
No 301
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.90 E-value=1.1e-05 Score=77.72 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=32.3
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
||||||+|.||++||+.|+++|.+|+|+||.+..+|
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 799999999999999999999999999999988666
No 302
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.90 E-value=1.5e-05 Score=75.00 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCI 54 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~ 54 (408)
+.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 358999999999999999999999999999987654
No 303
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.89 E-value=4.1e-05 Score=69.33 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=32.8
Q ss_pred cccCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 17 IWVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 17 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
....||+|||||.+|.++|..|++.|.+|+||||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34689999999999999999999999999999997
No 304
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.86 E-value=3.7e-05 Score=72.63 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=66.2
Q ss_pred eEEEEccCCcHHHHHHHHhcc---CCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhh
Q 035488 178 RVLVVGCGNSGMEVSLDLCNH---NAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVE 254 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~---g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (408)
+|+|||+|..|+.+|..+.+. +.+|+++.+++......... ..+...+.. +.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~--------~~~~g~~~~---~~-------------- 55 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLP--------GMIAGHYSL---DE-------------- 55 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhh--------HHHheeCCH---HH--------------
Confidence 589999999999999999643 57899999887322111000 000000000 00
Q ss_pred hcCCCCCCCCCcccccCCCCCcccChhhhhhhccCCeEEecC-ccEEeC--CeEEEecCcEEccCEEEEcCCCCCCCCC
Q 035488 255 KYGLKRPPTGPIELKNNEGKTPVLDIGALQKIRSGDIKVVPG-IKKFSP--GKVELVNGQVLEIDSVVLATGYRSNVPS 330 (408)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~--~~v~~~~g~~~~~D~vi~atG~~~~~~~ 330 (408)
......+.+++.+++++.+ +.+++. ..|.+.+|+++.+|.+|+|||..|..+.
T Consensus 56 -----------------------~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 56 -----------------------IRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred -----------------------hcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC
Confidence 0001123334456777766 777764 3588889989999999999999998643
No 305
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.86 E-value=3.1e-05 Score=81.16 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=33.6
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++|+|||+|+.|+.+|..|++.|++|+++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999999876
No 306
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.85 E-value=2.3e-05 Score=77.19 Aligned_cols=33 Identities=39% Similarity=0.582 Sum_probs=30.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..||+|||+|.||++||..++ +.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 469999999999999999997 579999999875
No 307
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.83 E-value=5.1e-05 Score=73.41 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=28.6
Q ss_pred EECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 24 IVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 24 IIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
|||+|.+|++||..+++.|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 308
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.83 E-value=2.3e-05 Score=78.43 Aligned_cols=38 Identities=21% Similarity=0.508 Sum_probs=35.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|++|++||..++++|.+|+|+||....||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 56999999999999999999999999999999987765
No 309
>PLN02529 lysine-specific histone demethylase 1
Probab=97.81 E-value=2.3e-05 Score=79.28 Aligned_cols=41 Identities=34% Similarity=0.376 Sum_probs=37.9
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
..++|+|||||++|++||..|+++|++|+|+|+.+.+||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 35799999999999999999999999999999999998854
No 310
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.80 E-value=2.4e-05 Score=76.29 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=35.2
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
+|+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 4899999999999999999999999999999999984
No 311
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.79 E-value=4.8e-05 Score=74.94 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||+|||||.||+.||..+++.|.+|+|+||....+|
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 56999999999999999999999999999999875554
No 312
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.79 E-value=9.1e-05 Score=73.28 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=69.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCC-CCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPR-VPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 97 (408)
.++|+|||||..|+.+|..|+..+.+|+|+++.+.+... . .+.. +....++++
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~---------------~-----------~l~~~l~~~~gI~i 404 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD---------------Q-----------VLQDKLRSLPNVTI 404 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccccc---------------H-----------HHHHHHhcCCCcEE
Confidence 468999999999999999999999999999987653100 0 0001 111248899
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+.++.++.+...++ ..-.+++.+..+++ +.++.+|.+++|+| ..|+.
T Consensus 405 ~~~~~v~~i~~~~g-~v~~v~~~~~~~g~--~~~i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 405 ITNAQTTEVTGDGD-KVTGLTYKDRTTGE--EHHLELEGVFVQIG--LVPNT 451 (517)
T ss_pred EECcEEEEEEcCCC-cEEEEEEEECCCCc--EEEEEcCEEEEeEC--CccCc
Confidence 99999999986531 22235555433222 25799999999999 44443
No 313
>PRK07121 hypothetical protein; Validated
Probab=97.79 E-value=2.6e-05 Score=76.68 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=35.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||||||+|.||++||.++++.|.+|+|+||....||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 57999999999999999999999999999999987665
No 314
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=6.6e-05 Score=70.51 Aligned_cols=98 Identities=14% Similarity=-0.032 Sum_probs=63.5
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVP-FIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~-v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
++|+|||+|+.|+.+|..|.+.|.+ |+|+++.+... . +.. ......+...+++++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----~-----------------~~~---~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----A-----------------PAG---KYEIERLIARGVEFL 228 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh----C-----------------CCC---HHHHHHHHHcCCEEe
Confidence 5899999999999999999999997 99999764210 0 000 001112334578888
Q ss_pred ccceeEEEEEcCCCCcEEEEEeec----------------CCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISS----------------SDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~----------------~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
+++.+.+++..+ +.-.|++.+. .+.+ ..+.+|.||+|+| .+|.
T Consensus 229 ~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~D~vi~a~G--~~p~ 287 (352)
T PRK12770 229 ELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSE---FVLEADTVVFAIG--EIPT 287 (352)
T ss_pred eccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCe---EEEECCEEEECcc--cCCC
Confidence 888888876443 2212332211 1222 5799999999999 4444
No 315
>PLN02487 zeta-carotene desaturase
Probab=97.77 E-value=2.9e-05 Score=76.80 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=37.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~ 59 (408)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35899999999999999999999999999999999998543
No 316
>PRK12831 putative oxidoreductase; Provisional
Probab=97.77 E-value=7e-05 Score=72.88 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=63.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||..|+.+|..|.+.|.+|+++++.+... ++... ...+.+.+.|++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~---------------------m~a~~---~e~~~a~~eGV~i~ 336 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE---------------------LPARV---EEVHHAKEEGVIFD 336 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc---------------------CCCCH---HHHHHHHHcCCEEE
Confidence 4789999999999999999999999999999865210 00000 00011223477888
Q ss_pred ccceeEEEEEcCCCCcEEEEEe---------ec-------CCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTI---------SS-------SDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~---------~~-------~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
+++.+..+...++...-.|++. ++ ++++ ..+.+|.||+|+| ..|.
T Consensus 337 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~---~~i~~D~Vi~AiG--~~p~ 397 (464)
T PRK12831 337 LLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSE---FVLEVDTVIMSLG--TSPN 397 (464)
T ss_pred ecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCce---EEEECCEEEECCC--CCCC
Confidence 8787777764332111112221 11 1112 5799999999999 4444
No 317
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.76 E-value=6.4e-05 Score=69.80 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=63.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCccCCCCCCCe--eeecC---CccccCCCC-----------
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV--PFIILERANCIASLWQNRTYDRL--KLHLP---KQFCQLPNF----------- 80 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~lie~~~~~gg~w~~~~~~~~--~~~~~---~~~~~~~~~----------- 80 (408)
.++|+|||||-++..++..|.+.+. +|+++-|...+--.- ...+ ....| ..++..+..
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~ 265 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH 265 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh
Confidence 5789999999999999999999874 899999986432100 0000 00000 011111100
Q ss_pred ----CCCCCCC----------CCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeC
Q 035488 81 ----PFPEDFP----------RVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATG 142 (408)
Q Consensus 81 ----~~~~~~~----------~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG 142 (408)
-...+.. .+..+..+.++.+++|++++..++ +.|.+++.+...++ ..++.+|+||+|||
T Consensus 266 ~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~--~~~~~~D~VilATG 338 (341)
T PF13434_consen 266 TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGE--EETLEVDAVILATG 338 (341)
T ss_dssp GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEEEEESEEEE---
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCC--eEEEecCEEEEcCC
Confidence 0000000 000023456778899999998873 48889998855444 37899999999999
No 318
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.74 E-value=2.9e-05 Score=74.43 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=39.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN 60 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~ 60 (408)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 469999999999999999999999999999999999997764
No 319
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.73 E-value=4.8e-05 Score=66.21 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC------CCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG------VPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g------~~v~lie~~~~~g 55 (408)
.++|+|||||..|+.+|+.|++++ ..++|||...-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 368999999999999999999997 7999999986444
No 320
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.72 E-value=4.8e-05 Score=77.46 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=37.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~ 59 (408)
.++|+|||||++|++||+.|++.|++|+|+|+++.+||...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 57899999999999999999999999999999999998543
No 321
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.71 E-value=4.6e-05 Score=72.03 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999999763
No 322
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.70 E-value=0.00018 Score=66.88 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=37.8
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAE 146 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~ 146 (408)
..|++++|+++|..+...+. +...|.+.++ .++.+|+||+|.|..++
T Consensus 185 ~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~g-------~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIEDN-EVLGVKLTKG-------EEIEADYVVLAPGRSGR 231 (486)
T ss_pred hcCcEEEeeeEEEEEEecCC-ceEEEEccCC-------cEEecCEEEEccCcchH
Confidence 77889999999999997763 3455777665 69999999999997443
No 323
>PTZ00367 squalene epoxidase; Provisional
Probab=97.70 E-value=2.5e-05 Score=77.34 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=32.8
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 36799999999999999999999999999999975
No 324
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.68 E-value=5e-05 Score=71.87 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.9
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+|+|||||++|+.+|..|+++|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877643
No 325
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.68 E-value=4.8e-05 Score=75.10 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=33.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+| +|++||..+++.|.+|+||||.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4599999999 999999999999999999999887654
No 326
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.68 E-value=5e-05 Score=74.36 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLW 58 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w 58 (408)
+||+|||+||+|+.+|..|++.|++|++||++...++.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 589999999999999999999999999999998887766
No 327
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.65 E-value=0.00014 Score=70.94 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=65.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||||..|+.+|..|++.|. +|+++++.+... .+ ... ...+.+.+.++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~-------~~--------------~~~---~~~~~~~~~GV~i 328 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE-------MP--------------ASE---EEVEHAKEEGVEF 328 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc-------CC--------------CCH---HHHHHHHHCCCEE
Confidence 4689999999999999999999998 899999865210 00 000 0012234568899
Q ss_pred cccceeEEEEEcCCCCcEEEEEee---------c------CCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTIS---------S------SDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~---------~------~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
++++.+..+..+.. +.-.|++.. + ++++ .++.+|.||+|+| ..|.
T Consensus 329 ~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~---~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 329 EWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSE---FTLPADLVIKAIG--QTPN 388 (457)
T ss_pred EecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCce---EEEECCEEEECcc--CCCC
Confidence 99998888875542 111132221 0 1122 5799999999999 5554
No 328
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.64 E-value=5.9e-05 Score=71.88 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
.+||+|||||.+|+++|++|++.|.+|+++|+....+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 5689999999999999999999999999999987543
No 329
>PLN02612 phytoene desaturase
Probab=97.62 E-value=6.9e-05 Score=74.74 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=36.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
.++|+|||||++|+++|.+|+++|++|+|+|+.+.+||.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 578999999999999999999999999999999999884
No 330
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.61 E-value=0.00014 Score=75.63 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357899999999999999999999999999999876
No 331
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.60 E-value=7.3e-05 Score=74.49 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=34.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN--CIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~--~~gg 56 (408)
..||||||+|.||++||..+++.|.+|+||||.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 3599999999999999999999999999999998 5565
No 332
>PLN02661 Putative thiazole synthesis
Probab=97.60 E-value=0.00043 Score=63.61 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCCCCCCCCeEEEEccCCcHHHHHHHHhcc-CCccEEEEecC
Q 035488 169 KSGASYRGKRVLVVGCGNSGMEVSLDLCNH-NAKPSMVVRSS 209 (408)
Q Consensus 169 ~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g~~V~~~~r~~ 209 (408)
.+...+..-+|+|||+|.+|+-+|..|++. |.+|+++.++.
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 334445566899999999999999999975 78999999876
No 333
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.59 E-value=6.3e-05 Score=70.24 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=79.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
...|+++|+|..|+.+|..|...+.+|++|++.+.+ .+.+.. ......+..|+++-+++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------~~~lf~-----------~~i~~~~~~y~e~kgVk~~ 273 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------LPRLFG-----------PSIGQFYEDYYENKGVKFY 273 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------hhhhhh-----------HHHHHHHHHHHHhcCeEEE
Confidence 456999999999999999999999999999998743 111110 0111123345556689999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEPEFE 153 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p~~~ 153 (408)
.++.+.+++-+.+.+.-.|.+.++ .++.+|.||+.+| .+|+.+.+.
T Consensus 274 ~~t~~s~l~~~~~Gev~~V~l~dg-------~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 274 LGTVVSSLEGNSDGEVSEVKLKDG-------KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred EecceeecccCCCCcEEEEEeccC-------CEeccCeEEEeec--ccccccccc
Confidence 999999998777556666777775 7999999999999 677766544
No 334
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.59 E-value=7.9e-05 Score=74.54 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=35.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.+|++||+.+++.|.+|+|+||.+..||
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 35999999999999999999999999999999987766
No 335
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.57 E-value=0.00042 Score=71.76 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCC-EEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVP-FIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~lie~~~ 52 (408)
.++|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99999865
No 336
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.56 E-value=9.4e-05 Score=73.68 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=35.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||+|||+|.+|+++|..+++.|.+|+|||+.+..||
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46999999999999999999999999999999877665
No 337
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.56 E-value=9.6e-05 Score=73.66 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=35.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||+|||+|++|++||..+++.|.+|+||||.+.+||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 46999999999999999999999999999999887665
No 338
>PLN02976 amine oxidase
Probab=97.55 E-value=9.4e-05 Score=78.44 Aligned_cols=42 Identities=33% Similarity=0.500 Sum_probs=39.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQN 60 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~ 60 (408)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 588999999999999999999999999999999999997654
No 339
>PLN03000 amine oxidase
Probab=97.54 E-value=0.00012 Score=74.68 Aligned_cols=41 Identities=37% Similarity=0.354 Sum_probs=38.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~ 59 (408)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 47899999999999999999999999999999999999544
No 340
>PLN02463 lycopene beta cyclase
Probab=97.52 E-value=0.00037 Score=67.23 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=71.8
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhhhc
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVEKY 256 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (408)
-+|+|||+|.+|+-+|..|++.|.+|.++.+++....|.... .+...+.. +. ..+.+ .... .....+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g-----~w~~~l~~-lg--l~~~l----~~~w-~~~~v~ 95 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG-----VWVDEFEA-LG--LLDCL----DTTW-PGAVVY 95 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccc-----hHHHHHHH-CC--cHHHH----HhhC-CCcEEE
Confidence 479999999999999999999999999999876322222111 00001100 00 00000 0000 000000
Q ss_pred CCCCCCCCCccccc--CCCCCcccChhhhhhhccCCeEEecC-ccEEeCC----eEEEecCcEEccCEEEEcCCCCCC
Q 035488 257 GLKRPPTGPIELKN--NEGKTPVLDIGALQKIRSGDIKVVPG-IKKFSPG----KVELVNGQVLEIDSVVLATGYRSN 327 (408)
Q Consensus 257 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 327 (408)
. .......... ..-.+..+.....+.+.+.+++++.. |.+++.. .|.+.+|+.+++|.||.|+|..+.
T Consensus 96 ~---~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 I---DDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred E---eCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 0000000000 00011223344455556668888755 6666532 367788889999999999998764
No 341
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.52 E-value=0.00019 Score=69.61 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCeEEEEccCCcHHHHHHHHhc--cCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCN--HNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~--~g~~V~~~~r~~ 209 (408)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 57899999999999999999986 699999999987
No 342
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.52 E-value=0.00011 Score=73.19 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=35.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||||||+| +|++||..+++.|.+|+||||.+.+||
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 5799999999 899999999999999999999988887
No 343
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.52 E-value=7e-05 Score=68.53 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=30.2
Q ss_pred CCcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCI 54 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~ 54 (408)
||++|||+|++|..+|.+|++.+ .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 68999999999999999999997 699999998753
No 344
>PRK06847 hypothetical protein; Provisional
Probab=97.51 E-value=0.00048 Score=65.33 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.++|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999877
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.46 E-value=0.00037 Score=69.48 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=63.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCcccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPR 98 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. ... . .......+.+++++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-------~~~-------~-----------~~~~~~~~~gV~i~ 197 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-------CAK-------L-----------IAEKVKNHPKIEVK 197 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-------cCH-------H-----------HHHHHHhCCCcEEE
Confidence 4689999999999999999999999999999976431 000 0 00001122488999
Q ss_pred ccceeEEEEEcCCCCcEEEEEeecCCCCcceEEE--EeCE----EEEeeCCCCCCCC
Q 035488 99 FNETVQSAKYDETFGFWRIKTISSSDSSFCEVEY--ICRW----LVVATGENAEKIE 149 (408)
Q Consensus 99 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i--~ad~----vViAtG~~~~~~~ 149 (408)
++++|+.+.... ....+.+.+..+++ ..++ .+|. |++|+| ..|+.
T Consensus 198 ~~~~V~~i~~~~--~v~~v~~~~~~~G~--~~~~~~~~D~~~~~Vi~a~G--~~Pn~ 248 (555)
T TIGR03143 198 FNTELKEATGDD--GLRYAKFVNNVTGE--ITEYKAPKDAGTFGVFVFVG--YAPSS 248 (555)
T ss_pred eCCEEEEEEcCC--cEEEEEEEECCCCC--EEEEeccccccceEEEEEeC--CCCCh
Confidence 999999997543 22223332211111 1233 3666 999999 45544
No 346
>PRK12839 hypothetical protein; Provisional
Probab=97.44 E-value=0.00019 Score=71.62 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=35.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||+|||+|.+|+++|..+++.|.+|+||||...+||
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46999999999999999999999999999999987776
No 347
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.42 E-value=0.00059 Score=61.03 Aligned_cols=33 Identities=36% Similarity=0.604 Sum_probs=30.4
Q ss_pred CcEEECCChHHHHHHHHHHHc----CCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQ----GVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~ 53 (408)
+|+|||||-.|.+.|..|+++ |++|+++|+++.
T Consensus 88 dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 88 DVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred CEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 899999999999999999876 699999999963
No 348
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.41 E-value=0.00014 Score=62.46 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=24.4
Q ss_pred EEEccCCcHHHHHHHHhccCCc-cEEEEecC
Q 035488 180 LVVGCGNSGMEVSLDLCNHNAK-PSMVVRSS 209 (408)
Q Consensus 180 ~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~ 209 (408)
+|||+|.+|+-+|..|.+.|.+ ++++++++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999885
No 349
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.40 E-value=0.00014 Score=62.38 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=29.2
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996655
No 350
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.39 E-value=0.00016 Score=74.83 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=31.6
Q ss_pred CcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCI 54 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~ 54 (408)
+|+||||||+|+++|..|++. |++|+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 699999999999999999998 8999999998753
No 351
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.38 E-value=0.0002 Score=72.53 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~g 55 (408)
..||||||||.||+.||..+++.|.+|+|+||.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 3599999999999999999999999999999986544
No 352
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00022 Score=63.46 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+||+|||||.||++|+..|+++|.++.||.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4699999999999999999999999999999864
No 353
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=7.5e-05 Score=73.28 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=31.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|+|||+|++|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999765
No 354
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00087 Score=62.61 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.3
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
..+||+|||||.||..||..+++.|.+.+|+-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 3689999999999999999999999998888776
No 355
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.35 E-value=0.0012 Score=64.49 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=63.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||+|..|+.+|..+.+.|. +|+|+++.+... .+. .. .....+.+.++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~-------~~~--------------~~---~e~~~~~~~GV~~ 337 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN-------MPG--------------SR---REVANAREEGVEF 337 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc-------CCC--------------CH---HHHHHHHhcCCEE
Confidence 4689999999999999999999996 799999875321 000 00 0011223457888
Q ss_pred cccceeEEEEEcCCCCcEEEEEee---------c-------CCCCcceEEEEeCEEEEeeCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTIS---------S-------SDSSFCEVEYICRWLVVATGENAEKI 148 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~---------~-------~~~~~~~~~i~ad~vViAtG~~~~~~ 148 (408)
++++.+..+..+.+...-.|++.. + .+++ ..+.+|.||+|+| ..|.
T Consensus 338 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~---~~i~~D~Vi~a~G--~~p~ 399 (467)
T TIGR01318 338 LFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE---FVLPADVVIMAFG--FQPH 399 (467)
T ss_pred EecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCce---EEEECCEEEECCc--CCCC
Confidence 888888887643321111122211 0 1112 5799999999999 4444
No 356
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.34 E-value=0.00024 Score=71.17 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=35.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
.+||+|||+|.+|+++|..+++.|++|+||||.+.+||
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 56999999999999999999999999999999877665
No 357
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.34 E-value=0.00024 Score=76.77 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=36.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
...||||||+|.||++||..+++.|.+|+|+||.+..||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999988776
No 358
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.32 E-value=0.0004 Score=72.60 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46799999999999999999999999999999876
No 359
>PRK06834 hypothetical protein; Provisional
Probab=97.32 E-value=0.001 Score=65.24 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3579999999999999999999999999999887
No 360
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.31 E-value=0.00032 Score=64.65 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=69.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--------------CCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--------------GVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPE 84 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--------------g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (408)
.-++|||||||.|..+|..|+.. .++|+++|..+.+-.. ++.-. ..+
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-----Fdkrl-------~~y------- 278 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-----FDKRL-------VEY------- 278 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-----HHHHH-------HHH-------
Confidence 45799999999999999999853 3699999998753211 00000 000
Q ss_pred CCCCCCCccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 85 DFPRVPHQFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
..+...+.++++..++.|..++... +++..+++.. .++.|-.+|=|||...+|.+-
T Consensus 279 -ae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~~~g~~---~~iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 279 -AENQFVRDGIDLDTGTMVKKVTEKT------IHAKTKDGEI---EEIPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred -HHHHhhhccceeecccEEEeecCcE------EEEEcCCCce---eeecceEEEecCCCCCchhhh
Confidence 0111224478888888888886543 6666665544 789999999999976666554
No 361
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.30 E-value=0.00034 Score=74.18 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35789999999999999999999999999999875
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.29 E-value=0.002 Score=65.58 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||||..|+.+|..+.+.|. +|+|+.+.+... .+. .. .++ ....+.|+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~-------mpa--------------~~--~ei-~~a~~eGV~i 378 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREE-------MPA--------------NR--AEI-EEALAEGVSL 378 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc-------CCC--------------CH--HHH-HHHHHcCCcE
Confidence 5789999999999999999999997 599999865210 000 00 000 0011347788
Q ss_pred cccceeEEEEEcCCCCcEEEE---Eeec-------------CCCCcceEEEEeCEEEEeeCC
Q 035488 98 RFNETVQSAKYDETFGFWRIK---TISS-------------SDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~---~~~~-------------~~~~~~~~~i~ad~vViAtG~ 143 (408)
++++.+.++...+ +...++ +..+ .+++ ..+.+|.||+|+|.
T Consensus 379 ~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~---~~i~~D~VI~AiG~ 435 (652)
T PRK12814 379 RELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSE---FTLQADTVISAIGQ 435 (652)
T ss_pred EeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCce---EEEECCEEEECCCC
Confidence 8888777776543 221122 1111 1112 57999999999993
No 363
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.28 E-value=0.00074 Score=68.82 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=62.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||||..|+.+|..+.++|. +|+++.+.+... |. . .. ...+.+.+.|+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~--~~-----~--------------~~---~e~~~~~~~Gv~~ 523 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN--MP-----G--------------SK---KEVKNAREEGANF 523 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC--CC-----C--------------CH---HHHHHHHHcCCeE
Confidence 4689999999999999999999997 699998865321 10 0 00 0011233457888
Q ss_pred cccceeEEEEEcCCCCcEEEEEee---------c-------CCCCcceEEEEeCEEEEeeCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTIS---------S-------SDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~---------~-------~~~~~~~~~i~ad~vViAtG~ 143 (408)
++++.+..+..+++...-.|++.. + .++ +..+.+|.||+|+|.
T Consensus 524 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~---~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 524 EFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGS---EFVMPADAVIMAFGF 582 (654)
T ss_pred EeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCc---eEEEECCEEEECccC
Confidence 887777777643321222233211 1 111 257999999999993
No 364
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.28 E-value=0.0027 Score=59.34 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=26.0
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEe
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVR 207 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r 207 (408)
+|+|||+|..|+|.|..+++.|.+|.++..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence 589999999999999999999999999953
No 365
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.27 E-value=0.00036 Score=69.30 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
..||||||+|.||++||..+++. .+|+|+||....+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 46999999999999999999987 89999999876665
No 366
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00036 Score=67.75 Aligned_cols=46 Identities=17% Similarity=0.023 Sum_probs=36.7
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAE 146 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~ 146 (408)
+.|+.+..++.|++|....+ +.+.|++.- ..|++.++|-|+|.|.+
T Consensus 199 ~~GA~viE~cpV~~i~~~~~-~~~gVeT~~--------G~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 199 ALGALVIENCPVTGLHVETD-KFGGVETPH--------GSIETECVVNAAGVWAR 244 (856)
T ss_pred hcCcEEEecCCcceEEeecC-CccceeccC--------cceecceEEechhHHHH
Confidence 78888999999999985543 555677766 48999999999998653
No 367
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.25 E-value=0.001 Score=61.15 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc----CCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ----GVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~ 51 (408)
.+||+||||||.|.+.|..|... ..+|+|+|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999999965 3699999998
No 368
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.24 E-value=0.0004 Score=69.63 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=36.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASL 57 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~ 57 (408)
.+||+|||+|++|+++|..+++.|.+|+|+||...+||.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 469999999999999999999999999999999877774
No 369
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.23 E-value=0.00036 Score=64.29 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=35.3
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCccC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV--PFIILERANCIASLWQ 59 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~lie~~~~~gg~w~ 59 (408)
..+|+|+|||.+||++|++|++++- .++|+|+.+..||-.+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 4689999999999999999999975 4667999999998433
No 370
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.22 E-value=0.00035 Score=65.95 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.4
Q ss_pred eEEEEccCCcHHHHHHHHhcc--CCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNH--NAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~--g~~V~~~~r~~ 209 (408)
.|+|||+|..|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 489999999999999999987 89999999876
No 371
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.20 E-value=0.001 Score=65.04 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=62.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||||+.|+.+|..+.+.|. +|++++....+...+. .. ...+.+... ...+.+.+.++++
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~----~~---------~~~~~~~~~-~~~~~~~~~GV~i 346 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN----KN---------NPWPYWPMK-LEVSNAHEEGVER 346 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccc----cc---------cCCcccchH-HHHHHHHHcCCeE
Confidence 4689999999999999999999986 7887776543221000 00 000000000 0011223558888
Q ss_pred cccceeEEEEEcCCCCcE-EEEEe-----ec-----CCCCcceEEEEeCEEEEeeC
Q 035488 98 RFNETVQSAKYDETFGFW-RIKTI-----SS-----SDSSFCEVEYICRWLVVATG 142 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~-~V~~~-----~~-----~~~~~~~~~i~ad~vViAtG 142 (408)
++++.++.+...+ +.. .|++. ++ .+++ .++.+|.||+|+|
T Consensus 347 ~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~---~~i~~D~VI~A~G 397 (471)
T PRK12810 347 EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSE---FVLPADLVLLAMG 397 (471)
T ss_pred EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCce---EEEECCEEEECcC
Confidence 8888888886433 221 13322 11 1222 6899999999999
No 372
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.19 E-value=0.00062 Score=64.99 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4579999999999999999999999999999976
No 373
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.17 E-value=0.00095 Score=64.76 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=31.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 5789999999999999999999999999999865
No 374
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0044 Score=56.48 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=26.5
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
-+|+|||+|+.|+-.|..+.+.+.+++++...
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~ 35 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEG 35 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 36999999999999999999999884444433
No 375
>PRK07236 hypothetical protein; Provisional
Probab=97.11 E-value=0.0027 Score=60.47 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=33.0
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
...+|+|||+|.+|+.+|..|++.|.+|+++.+++
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 56789999999999999999999999999999987
No 376
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.10 E-value=0.0059 Score=49.95 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=25.5
Q ss_pred EEEccCCcHHHHHHHHhccC-----CccEEEEecC
Q 035488 180 LVVGCGNSGMEVSLDLCNHN-----AKPSMVVRSS 209 (408)
Q Consensus 180 ~VvG~G~~a~e~a~~l~~~g-----~~V~~~~r~~ 209 (408)
+|||+|.+|+-++..|.+.. .+|+++.+++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 3788888865
No 377
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.09 E-value=0.00024 Score=68.53 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=33.7
Q ss_pred cCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 93 FDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 93 ~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
.+.+++++++|++|+..+ +.++|++.++ ..+.||+||+|+..
T Consensus 222 ~g~~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 222 LGGEIRLNTPVTRIERED--GGVTVTTEDG-------ETIEADAVISAVPP 263 (450)
T ss_dssp HGGGEESSEEEEEEEEES--SEEEEEETTS-------SEEEESEEEE-S-H
T ss_pred cCceeecCCcceeccccc--cccccccccc-------eEEecceeeecCch
Confidence 345799999999999988 7777888776 58999999999985
No 378
>PRK02106 choline dehydrogenase; Validated
Probab=97.06 E-value=0.00056 Score=68.46 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=31.5
Q ss_pred CCcEEECCChHHHHHHHHHHH-cCCCEEEEecCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKN-QGVPFIILERAN 52 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~-~g~~v~lie~~~ 52 (408)
+|++|||+|++|+.+|.+|++ .|++|+|||+.+
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 699999999999999999999 799999999985
No 379
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.01 E-value=0.00094 Score=65.43 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=32.7
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+++|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56899999999999999999999999999998876
No 380
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.01 E-value=0.0013 Score=69.96 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=66.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV-PFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+.. .+...+.+.++++
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~----------------------------~l~~~L~~~GV~i 368 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSP----------------------------EARAEARELGIEV 368 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhH----------------------------HHHHHHHHcCCEE
Confidence 4689999999999999999999996 5789998653210 0112233458889
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
+.++.|+.+..+. +.-.|++....+.. .++.+|.|+++.| ..|+.
T Consensus 369 ~~~~~v~~i~g~~--~v~~V~l~~~~g~~---~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 369 LTGHVVAATEGGK--RVSGVAVARNGGAG---QRLEADALAVSGG--WTPVV 413 (985)
T ss_pred EcCCeEEEEecCC--cEEEEEEEecCCce---EEEECCEEEEcCC--cCchh
Confidence 9999998887543 32224544212222 6899999999999 55543
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.00 E-value=0.00071 Score=71.37 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=32.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+||+|||||.||+.||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46999999999999999999999999999999864
No 382
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.00 E-value=0.0016 Score=67.44 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++|+|||+|+.|+.+|..|+..|++|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 478999999999999999999999999999999764
No 383
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.00 E-value=0.00088 Score=63.29 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=31.2
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
+||+|||+|++|+++|..+++.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 489999999999999999999999999999875
No 384
>PRK09126 hypothetical protein; Provisional
Probab=96.99 E-value=0.0024 Score=60.96 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=31.2
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 385
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.99 E-value=0.00094 Score=67.79 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+++|+|||+|.+|+..|..|+..|.+|+++.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 47899999999999999999999999999999877
No 386
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.96 E-value=0.0014 Score=62.41 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHHHHHHHHhhcchHHH-HHHHHHHHHHHhhhhhh
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQLAVLMMKYFPLWLV-DKILLILARLILGNVEK 255 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 255 (408)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+....+.. .+ ..+.....+.|..... +++...-... ...
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~-r~---~~l~~~~~~~L~~lG~~~~i~~~~~~~----~~~ 74 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG-RG---IALSPNALRALERLGLWDRLEALGVPP----LHV 74 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc-ee---eeecHhHHHHHHHcCChhhhhhccCCc----eee
Confidence 5799999999999999999999999999999832222211 11 0122222222211111 1111100000 000
Q ss_pred cCCCCCCCCCcccc--cCCCC-------CcccChhhhhhhcc-CCeEEecC--ccEEeCCe----EEEe-cCcEEccCEE
Q 035488 256 YGLKRPPTGPIELK--NNEGK-------TPVLDIGALQKIRS-GDIKVVPG--IKKFSPGK----VELV-NGQVLEIDSV 318 (408)
Q Consensus 256 ~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~-~~i~~~~~--i~~~~~~~----v~~~-~g~~~~~D~v 318 (408)
..+.........+. ..... ...+...+.+.+.+ .+++++.+ ++.++.+. +.+. +|+++.||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~ll 154 (387)
T COG0654 75 MVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLL 154 (387)
T ss_pred EEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEE
Confidence 00000000000111 11101 11223344555554 45899887 77776442 6777 9999999999
Q ss_pred EEcCCCCC
Q 035488 319 VLATGYRS 326 (408)
Q Consensus 319 i~atG~~~ 326 (408)
|-|-|...
T Consensus 155 VgADG~~S 162 (387)
T COG0654 155 VGADGANS 162 (387)
T ss_pred EECCCCch
Confidence 99999764
No 387
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0072 Score=58.42 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCc-cEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAK-PSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~-V~~~~r~~ 209 (408)
...+|+|||+|.+|+-+|..|.+.|.. +.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 345799999999999999999999988 99999886
No 388
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.95 E-value=0.005 Score=56.82 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=38.1
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
+.++.++-.++|.+++...+ +.+.+++.....++ ..++++|.||+|||-
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~--~~t~~~D~vIlATGY 338 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGE--LETVETDAVILATGY 338 (436)
T ss_pred CCCeeeccccceeeeecCCC-ceEEEEEeeccCCC--ceEEEeeEEEEeccc
Confidence 44567788899999998875 55888887764444 378999999999994
No 389
>PRK13984 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.0077 Score=60.99 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=26.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCC------CEEEEe
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGV------PFIILE 49 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~------~v~lie 49 (408)
.++|+|||||..|+.+|..|++++. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 677764
No 390
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.0038 Score=59.91 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=30.5
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999876
No 391
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.91 E-value=0.0031 Score=61.95 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++++|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357899999999999999999999999999988765
No 392
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.89 E-value=0.0035 Score=59.88 Aligned_cols=30 Identities=10% Similarity=0.381 Sum_probs=28.5
Q ss_pred EEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 180 LVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 180 ~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|||+|.+|+-+|..+++.|.+|+++.+++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999999999999887
No 393
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.89 E-value=0.0026 Score=56.45 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=33.8
Q ss_pred cCCcEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ--GVPFIILERANCIA 55 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~lie~~~~~g 55 (408)
.+|+||||||..|++.|+.|.-+ +.+|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 58999999999999999999887 78999999997665
No 394
>PRK09897 hypothetical protein; Provisional
Probab=96.87 E-value=0.0089 Score=58.87 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=28.8
Q ss_pred CeEEEEccCCcHHHHHHHHhccCC--ccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNA--KPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~--~V~~~~r~~ 209 (408)
++|+|||+|.+|+-+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999987654 799999865
No 395
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.84 E-value=0.00048 Score=63.14 Aligned_cols=100 Identities=22% Similarity=0.219 Sum_probs=67.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHc----CCCEE-EEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCcc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQ----GVPFI-ILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQF 93 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~-lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (408)
.+.|.|||+|+-|-.+|+.|.+. |.+|. ||+.+-.++... |..+ ..+-.+-..+.
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiL------------Peyl--------s~wt~ekir~~ 406 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKIL------------PEYL--------SQWTIEKIRKG 406 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhh------------HHHH--------HHHHHHHHHhc
Confidence 46899999999999999999885 45554 555443221100 0000 00111122356
Q ss_pred CccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCC
Q 035488 94 DINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIE 149 (408)
Q Consensus 94 ~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~ 149 (408)
|+.++-+..|.++.... +...+.+.++ .+++.|.||+|+| ..|+.
T Consensus 407 GV~V~pna~v~sv~~~~--~nl~lkL~dG-------~~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCC--KNLVLKLSDG-------SELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred Cceeccchhhhhhhhhc--cceEEEecCC-------CeeeeeeEEEEec--CCCch
Confidence 89999999999998776 5555777776 7999999999999 56654
No 396
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.83 E-value=0.0039 Score=61.71 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=30.6
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
=.|+|||+|..|+++|..+++.|.+|.++.++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 369999999999999999999999999999874
No 397
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.81 E-value=0.0048 Score=58.81 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=30.0
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 48999999999999999999999999999876
No 398
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.81 E-value=0.0045 Score=59.18 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=32.3
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 399
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.79 E-value=0.0024 Score=59.88 Aligned_cols=32 Identities=19% Similarity=0.517 Sum_probs=30.3
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 58999999999999999999999999999984
No 400
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.79 E-value=0.0061 Score=58.46 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
..+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 347999999999999999999999999999986
No 401
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.78 E-value=0.0026 Score=61.19 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCeEEEEccCCcHHHHHHHHh-ccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLC-NHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~-~~g~~V~~~~r~~ 209 (408)
.+++|+|||+|++|+.+|..|+ ..|.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5699999999988
No 402
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.76 E-value=0.0027 Score=60.48 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 369999999999999999999999999999887
No 403
>PRK05868 hypothetical protein; Validated
Probab=96.76 E-value=0.0048 Score=58.42 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=31.3
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
++|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 404
>PRK06753 hypothetical protein; Provisional
Probab=96.76 E-value=0.0046 Score=58.61 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=30.9
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999987
No 405
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.72 E-value=0.0013 Score=65.38 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=30.3
Q ss_pred CcEEECCChHHHHHHHHHHHcC-CCEEEEecCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQG-VPFIILERAN 52 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~ 52 (408)
|++|||||.+|+.+|.+|++.+ ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999985
No 406
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.71 E-value=0.0043 Score=59.46 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEEEEccCCcHHHHHHHHhccC--CccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHN--AKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g--~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.| .+|+++++++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 5899999999999999999985 8999999987
No 407
>PRK06184 hypothetical protein; Provisional
Probab=96.69 E-value=0.0078 Score=59.49 Aligned_cols=34 Identities=21% Similarity=0.538 Sum_probs=31.8
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.-+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999987
No 408
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.67 E-value=0.0028 Score=60.05 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=69.7
Q ss_pred eEEEEccCCcHHHHHHHH--hccCCccEEEEecCceeecccc-cCCchHHHHHHHHhhcchHHHHHHHHHHHHHHhhhhh
Q 035488 178 RVLVVGCGNSGMEVSLDL--CNHNAKPSMVVRSSVHVLPREV-LGKSTFQLAVLMMKYFPLWLVDKILLILARLILGNVE 254 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l--~~~g~~V~~~~r~~~~~~p~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (408)
.|+|||+|++|.-+|..| +..|.+|.++++.+....+... ......+... +.......+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-----------------~~~~v~~~w~ 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-----------------LDSLVSHRWS 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-----------------hHHHHheecC
Confidence 489999999999999999 7788999999887632222111 1000000000 0000000111
Q ss_pred hcCCCCCCCCCcccc--cCCCCCcccChhhhhhhccCCeEEecC-ccEEeCCe----EEEecCcEEccCEEEEcCCCCCC
Q 035488 255 KYGLKRPPTGPIELK--NNEGKTPVLDIGALQKIRSGDIKVVPG-IKKFSPGK----VELVNGQVLEIDSVVLATGYRSN 327 (408)
Q Consensus 255 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 327 (408)
...+..+........ ...-.+..+.....+.+.+.++..... |.+++..+ +.+.+|+++.++.||-|.|..+.
T Consensus 64 ~~~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 64 GWRVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred ceEEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 111110000000000 000011233333445555456665555 77776553 57889999999999999997654
No 409
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.62 E-value=0.0021 Score=62.10 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999876
No 410
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.61 E-value=0.0033 Score=59.08 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=33.1
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.++++|||||.+|++.|.+|++.|.+|+++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36789999999999999999999999999999988
No 411
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.60 E-value=0.018 Score=55.29 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..++|+|||+|.+|+-.|..|.+.|.+++++.|++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 47899999999999999999999999999999988
No 412
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.60 E-value=0.0021 Score=61.80 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=38.8
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecCceeecccccCCchHH
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVLGKSTFQ 224 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~~~~~p~~~~~~~~~~ 224 (408)
..+++|+|||+|+.|+.+|..|+..|+.|+++.+.+ ..--.-..|.+.+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~-~~GGll~yGIP~~k 170 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA-LDGGLLLYGIPDFK 170 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC-CCceeEEecCchhh
Confidence 467999999999999999999999999999988877 33333333444443
No 413
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.58 E-value=0.034 Score=54.37 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=30.4
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999998865
No 414
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.57 E-value=0.0042 Score=59.10 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=30.8
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|..|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999875
No 415
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0056 Score=63.05 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=34.2
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++|+|||+|++|+-+|..|.+.|+.|++..|++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 468999999999999999999999999999999988
No 416
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.50 E-value=0.013 Score=56.06 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=30.2
Q ss_pred eEEEEccCCcHHHHHHHHhcc--CCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNH--NAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~--g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999998 99999999875
No 417
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.50 E-value=0.0053 Score=52.56 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+++|+|||||.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468899999999999999999999999999986543
No 418
>PLN02785 Protein HOTHEAD
Probab=96.49 E-value=0.0029 Score=63.29 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=31.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+|++|||||.||+.+|.+|.+ +.+|+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 5899999999999999999999 699999999863
No 419
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.47 E-value=0.004 Score=59.18 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=30.5
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999987
No 420
>PRK07190 hypothetical protein; Provisional
Probab=96.45 E-value=0.01 Score=58.16 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.|+|||+|.+|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999987
No 421
>PLN02697 lycopene epsilon cyclase
Probab=96.44 E-value=0.0095 Score=58.67 Aligned_cols=33 Identities=15% Similarity=0.429 Sum_probs=29.9
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|.++.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 479999999999999999999999999997653
No 422
>PRK08244 hypothetical protein; Provisional
Probab=96.43 E-value=0.0087 Score=59.04 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=31.2
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999987
No 423
>PRK07588 hypothetical protein; Provisional
Probab=96.43 E-value=0.017 Score=55.19 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=30.7
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 79999999999999999999999999999886
No 424
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.43 E-value=0.0075 Score=57.55 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.9
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999875
No 425
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.41 E-value=0.0078 Score=57.20 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=30.4
Q ss_pred eEEEEccCCcHHHHHHHHhccC-CccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHN-AKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g-~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.| .+|+++++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999987
No 426
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.35 E-value=0.0031 Score=58.69 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=35.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIAS 56 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg 56 (408)
-+|++|||+|..||.||..|++.|.+|+++|+....||
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 57999999999999999999999999999999966665
No 427
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0031 Score=62.60 Aligned_cols=34 Identities=35% Similarity=0.582 Sum_probs=32.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+|+||||+|.+|..+|..|+..|++|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5799999999999999999998899999999984
No 428
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.29 E-value=0.0062 Score=55.44 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=30.4
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999886
No 429
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.0048 Score=55.17 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=31.8
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
..|-|||||.||-.||..++++|++|.|+|..+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4699999999999999999999999999999864
No 430
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.22 E-value=0.0037 Score=59.24 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=30.1
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 68999999999999999999999999999864
No 431
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.19 E-value=0.011 Score=50.80 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
..+++|+|||||.+|..=+..|.+.|++|+++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46889999999999999999999999999998643
No 432
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.18 E-value=0.029 Score=56.33 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=60.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQG-VPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.++|+|||+|..|+.+|..+.+.+ .+|+|+.+.+... +.. .. .. .....+.++++
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~-------~~~--------------~~--~~-~~~a~~~GVki 322 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRED-------MPA--------------HD--EE-IEEALREGVEI 322 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCccc-------CCC--------------CH--HH-HHHHHHcCCEE
Confidence 578999999999999999999998 5788988865210 000 00 00 00111347788
Q ss_pred cccceeEEEEEcCCCCcEEEE---Ee------ec-----CCCCcceEEEEeCEEEEeeCC
Q 035488 98 RFNETVQSAKYDETFGFWRIK---TI------SS-----SDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~---~~------~~-----~~~~~~~~~i~ad~vViAtG~ 143 (408)
++++.+..+....+ +...++ +. ++ .+++ .++.+|.||+|+|.
T Consensus 323 ~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~---~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 323 NWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEE---ETLEADLVVLAIGQ 378 (564)
T ss_pred EecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCce---EEEECCEEEECcCC
Confidence 88788877765432 221221 11 11 1222 68999999999993
No 433
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.17 E-value=0.0036 Score=60.44 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.|+|||||..|+-.|..+++.|.+|.++.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999887
No 434
>PRK07045 putative monooxygenase; Reviewed
Probab=96.16 E-value=0.014 Score=55.60 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=31.4
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 379999999999999999999999999999987
No 435
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.16 E-value=0.032 Score=53.67 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=32.0
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4579999999999999999999999999999987
No 436
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.14 E-value=0.011 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCeEEEecCcEEccCEEEEcCCCCCCC
Q 035488 302 PGKVELVNGQVLEIDSVVLATGYRSNV 328 (408)
Q Consensus 302 ~~~v~~~~g~~~~~D~vi~atG~~~~~ 328 (408)
++.|.+.+|..+.++.+++|||++|-.
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCcce
Confidence 345889999999999999999999975
No 437
>PRK08013 oxidoreductase; Provisional
Probab=96.14 E-value=0.016 Score=55.57 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=31.4
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 479999999999999999999999999999987
No 438
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.11 E-value=0.019 Score=56.97 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.8
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+++|..+++.|.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999999864
No 439
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.04 E-value=0.044 Score=53.16 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..-+|+|||+|..|.-+|..|++.|.+|.++++++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34579999999999999999999999999999876
No 440
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.02 E-value=0.016 Score=55.74 Aligned_cols=32 Identities=28% Similarity=0.661 Sum_probs=30.0
Q ss_pred eEEEEccCCcHHHHHHHHhccCC-ccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNA-KPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~-~V~~~~r~~ 209 (408)
+|+|||+|..|+-+|..|.+.|. +|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 69999999999999999999984 999999987
No 441
>PRK10015 oxidoreductase; Provisional
Probab=96.02 E-value=0.005 Score=59.42 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-+|+|||+|.+|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 379999999999999999999999999999877
No 442
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.00 E-value=0.0063 Score=49.85 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=30.4
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
+|+|||||..|.++|..|+.+|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999975
No 443
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.97 E-value=0.02 Score=54.80 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=30.4
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|+.|+-+|..|++.|.+|.++.++.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999875
No 444
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.95 E-value=0.042 Score=54.71 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=38.5
Q ss_pred hhhhccCCeEEecC--ccEEeCC--eEEEecCcEEccCEEEEcCCCCCCCCC
Q 035488 283 LQKIRSGDIKVVPG--IKKFSPG--KVELVNGQVLEIDSVVLATGYRSNVPS 330 (408)
Q Consensus 283 ~~~~~~~~i~~~~~--i~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~~ 330 (408)
.+..++.+|+++++ +..++.. .|....|..+.+|-+|+|||..|....
T Consensus 66 ~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 66 NDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred hhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC
Confidence 34556779999998 7777654 377788999999999999999998633
No 445
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.93 E-value=0.008 Score=53.53 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=27.4
Q ss_pred ccEEeCC--eEEEecCcEEccCEEEEcCCCCCCC
Q 035488 297 IKKFSPG--KVELVNGQVLEIDSVVLATGYRSNV 328 (408)
Q Consensus 297 i~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~ 328 (408)
+++++++ .|.+.+|++|.+|++|+|+|.+-+.
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence 5566554 5889999999999999999999988
No 446
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.90 E-value=0.023 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEe
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVR 207 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r 207 (408)
..+++|+|||+|.+|...+..|.+.|.+|+++.+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 4789999999999999999999999999999864
No 447
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.87 E-value=0.027 Score=53.70 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999886
No 448
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.79 E-value=0.019 Score=54.69 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=29.7
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
+|+|||+|++|+-+|..|++.|.+|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 449
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.79 E-value=0.0086 Score=41.17 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=27.0
Q ss_pred EEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 181 VVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 181 VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999988
No 450
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.77 E-value=0.028 Score=52.76 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=34.9
Q ss_pred ccCccccccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCC
Q 035488 92 QFDINPRFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEK 147 (408)
Q Consensus 92 ~~~~~~~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~ 147 (408)
+.+++++++++|++| .. +.|.+.+..+ ...++||+||+|||..+.|
T Consensus 98 ~~gV~i~~~~~V~~i--~~--~~~~v~~~~~------~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 98 EQGVQFHTRHRWIGW--QG--GTLRFETPDG------QSTIEADAVVLALGGASWS 143 (376)
T ss_pred HCCCEEEeCCEEEEE--eC--CcEEEEECCC------ceEEecCEEEEcCCCcccc
Confidence 789999999999999 22 3477776432 1469999999999965443
No 451
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.68 E-value=0.012 Score=49.25 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=28.4
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999985
No 452
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.68 E-value=0.017 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=31.0
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.|+|||+|++|.-+|..|++.|.+|.++.+..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~ 36 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS 36 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence 369999999999999999999999999999977
No 453
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.66 E-value=0.079 Score=50.55 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=29.9
Q ss_pred CeEEEEccCCcHHHHHHHHhcc---CCccEEEEec
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNH---NAKPSMVVRS 208 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~---g~~V~~~~r~ 208 (408)
-+|+|||+|.+|+-+|..|++. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 454
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.64 E-value=0.14 Score=50.47 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=28.6
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
.|+|||+|.+|+-.|..+++.|. |+++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 69999999999999999999997 99998875
No 455
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.62 E-value=0.017 Score=49.53 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.4
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|+|||||..|..-+..|.+.|.+|+|++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999999764
No 456
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.53 E-value=0.009 Score=44.99 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=30.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
.++|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 458999999999999999999999999999987
No 457
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.064 Score=50.66 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.9
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.|+|||||..|+|.|.+.++.|.+.++++.+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 379999999999999999999999998888655
No 458
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.51 E-value=0.013 Score=57.37 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=33.6
Q ss_pred ccCCcEEECCChHHHHHHHHHHHc-CCCEEEEecCCCC
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQ-GVPFIILERANCI 54 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~~ 54 (408)
..||.+|||||-||+.+|.+|.+. ..+|+|+|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 369999999999999999999998 5799999998655
No 459
>PRK06996 hypothetical protein; Provisional
Probab=95.51 E-value=0.014 Score=55.91 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred CeEEEEccCCcHHHHHHHHhccC----CccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHN----AKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g----~~V~~~~r~~ 209 (408)
.+|+|||+|.+|.-+|..|++.| .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999987 4699999875
No 460
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.017 Score=50.26 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=31.3
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+++|||+|..|.+.|..|.+.|+.|++||+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 699999999999999999999999999999863
No 461
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=0.031 Score=53.73 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.2
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.|+|||+|..|+|.|.+.++.|.++.+++-+.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 379999999999999999999999999888765
No 462
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.44 E-value=0.034 Score=55.45 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 176 GKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 176 ~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999987
No 463
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.015 Score=56.83 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.8
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+|+|||.|++|+++|+.|++.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998764
No 464
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.42 E-value=0.05 Score=54.43 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 175 RGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 175 ~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
...+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34579999999999999999999999999999887
No 465
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.068 Score=50.83 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred CeEEEEccCCcHHHHHHHHhccC---CccEEEEecCc
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHN---AKPSMVVRSSV 210 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g---~~V~~~~r~~~ 210 (408)
.+|+|||+|.+|+.+|.+|.+.- ..|+++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999999752 23888887773
No 466
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.33 E-value=0.016 Score=43.63 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCCCeEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 174 YRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 174 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
..+++|+|||+|..|..-+..|.+.|.+|+++.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 47899999999999999999999999999998765
No 467
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.31 E-value=0.017 Score=54.80 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=31.2
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
++|+|||+|.+|+++|..|++.|.+|+++..++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999776
No 468
>PRK11445 putative oxidoreductase; Provisional
Probab=95.30 E-value=0.098 Score=49.10 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=29.4
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|.-+|..|++. .+|++++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 689999999999999999999 9999999887
No 469
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.23 E-value=0.025 Score=46.19 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=30.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
.++|+|||||..|..-|..|.+.|.+|+||++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 568999999999999999999999999999643
No 470
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.21 E-value=0.041 Score=53.45 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=34.1
Q ss_pred cChhhhhhhccCCeEEecC-ccEE--eCC----eEEEecCcEEccCEEEEcCCCCCCC
Q 035488 278 LDIGALQKIRSGDIKVVPG-IKKF--SPG----KVELVNGQVLEIDSVVLATGYRSNV 328 (408)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~-i~~~--~~~----~v~~~~g~~~~~D~vi~atG~~~~~ 328 (408)
+...+.+...+.|++++.+ |.++ +++ .|.+.+|+++++|.+|=|+|+..-.
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 3444556566779999888 5444 333 3677889999999999999997543
No 471
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.17 E-value=0.034 Score=53.94 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.5
Q ss_pred eEEEEccCCcHHHHHHHHhc----cCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCN----HNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~----~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999854
No 472
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.17 E-value=0.025 Score=51.47 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
+++|.|||+|..|.+.|..+++.|++|+++|.++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3579999999999999999999999999999875
No 473
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.0041 Score=55.76 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccccc
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINPRF 99 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
-+-+|||||..+|.||-.|+-.|++|++.=|.--+-|. +.. ..+...+++.++|+.+.-
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGF------Dqd---------------mae~v~~~m~~~Gikf~~ 257 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGF------DQD---------------MAELVAEHMEERGIKFLR 257 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccc------cHH---------------HHHHHHHHHHHhCCceee
Confidence 36899999999999999999999999999887543221 000 000112233355777665
Q ss_pred cceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 100 NETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 100 ~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
....+.++..++ +...|...+..+++ ..+-.||.|+.|.|.
T Consensus 258 ~~vp~~Veq~~~-g~l~v~~k~t~t~~--~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 258 KTVPERVEQIDD-GKLRVFYKNTNTGE--EGEEEYDTVLWAIGR 298 (503)
T ss_pred cccceeeeeccC-CcEEEEeecccccc--cccchhhhhhhhhcc
Confidence 556666665554 55666666554444 256789999999993
No 474
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.08 E-value=0.016 Score=55.34 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred EEECCChHHHHHH-HHHH----HcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 23 VIVGAGPSGLAVA-AGLK----NQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 23 vIIG~G~aGl~~A-~~l~----~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
+|++.|..|+..+ ..++ +.|.+|++++..+.. .++.. ....+.+.+.+.++++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps--------lpG~r--------------L~~aL~~~l~~~Gv~I 276 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS--------VPGLR--------------LQNALRRAFERLGGRI 276 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC--------CchHH--------------HHHHHHHHHHhCCCEE
Confidence 7789999999888 4443 469999999886531 11110 1111222333558899
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGE 143 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~ 143 (408)
+.+++|++++..+ +...+.... .+.+ ..+++|.||+|+|.
T Consensus 277 ~~g~~V~~v~~~~--~~V~~v~~~-~g~~---~~i~AD~VVLAtGr 316 (422)
T PRK05329 277 MPGDEVLGAEFEG--GRVTAVWTR-NHGD---IPLRARHFVLATGS 316 (422)
T ss_pred EeCCEEEEEEEeC--CEEEEEEee-CCce---EEEECCEEEEeCCC
Confidence 9999999998765 332222221 2222 57999999999994
No 475
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.07 E-value=0.027 Score=54.91 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=31.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999974
No 476
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.06 E-value=0.047 Score=54.01 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.7
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|+|||+|.+|.-.|..|++...+|++.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 5789999999999999999999988998888764
No 477
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.04 E-value=0.027 Score=51.03 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=31.9
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+++|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 45799999999999999999999999999998753
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.97 E-value=0.023 Score=46.11 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=29.0
Q ss_pred EEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 179 VLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 179 v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998865
No 479
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.95 E-value=0.034 Score=47.55 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=30.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERA 51 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~ 51 (408)
.++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999864
No 480
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.029 Score=47.49 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=35.2
Q ss_pred CCCCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 171 GASYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 171 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
..++....|+|||+|++|+-+|..|++.|.+|.++.|+-
T Consensus 25 l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 25 LLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 345677899999999999999999999999999999876
No 481
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.89 E-value=0.024 Score=54.03 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=30.5
Q ss_pred eEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 178 RVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 178 ~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
+|+|||+|.+|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999999776
No 482
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.87 E-value=0.022 Score=51.49 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=69.4
Q ss_pred ccCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCccCccc
Q 035488 18 WVNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPRVPHQFDINP 97 (408)
Q Consensus 18 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (408)
.+++++|||||..++..|--++-.|.++.++=|.+.+--. ++... .+...+.+...++++
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-----FD~~i---------------~~~v~~~~~~~ginv 247 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-----FDEMI---------------SDLVTEHLEGRGINV 247 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----hhHHH---------------HHHHHHHhhhcceee
Confidence 4789999999999999999999999999888887653210 11110 001112233458889
Q ss_pred cccceeEEEEEcCCCCcEEEEEeecCCCCcceEEEEeCEEEEeeCCCCCCCCC
Q 035488 98 RFNETVQSAKYDETFGFWRIKTISSSDSSFCEVEYICRWLVVATGENAEKIEP 150 (408)
Q Consensus 98 ~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~i~ad~vViAtG~~~~~~~p 150 (408)
+.++.++.+....+ +...+....+ ....+|.|+-|+| ..|+..
T Consensus 248 h~~s~~~~v~K~~~-g~~~~i~~~~-------~i~~vd~llwAiG--R~Pntk 290 (478)
T KOG0405|consen 248 HKNSSVTKVIKTDD-GLELVITSHG-------TIEDVDTLLWAIG--RKPNTK 290 (478)
T ss_pred cccccceeeeecCC-CceEEEEecc-------ccccccEEEEEec--CCCCcc
Confidence 99999988887664 3343444443 3456999999999 455443
No 483
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.87 E-value=0.031 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.++|.|||+|..|...|..++..|++|+++|+++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 35799999999999999999999999999998763
No 484
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.84 E-value=0.4 Score=46.37 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=28.3
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
-.|+|||+|..|+-.|..+. .|.+|.++.+.+
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred ccEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 36999999999999999974 699999999876
No 485
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.79 E-value=0.039 Score=50.29 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.6
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.++|.|||+|..|...|..+++.|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999875
No 486
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.2 Score=42.62 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.0
Q ss_pred hhhccCCeEEecC-ccEEeCCe---EEEecCcEEccCEEEEcCCCCCCC
Q 035488 284 QKIRSGDIKVVPG-IKKFSPGK---VELVNGQVLEIDSVVLATGYRSNV 328 (408)
Q Consensus 284 ~~~~~~~i~~~~~-i~~~~~~~---v~~~~g~~~~~D~vi~atG~~~~~ 328 (408)
+...+-+.++++. |.+++-.+ ..+++.+.+.+|.||+|||-...-
T Consensus 78 kqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 78 KQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred HHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceee
Confidence 3334456777766 66555432 345677889999999999988764
No 487
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.78 E-value=0.026 Score=47.48 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.3
Q ss_pred CcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 21 GPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 21 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+|.|||.|..|+.+|..+++.|++|+.+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 599999999999999999999999999999863
No 488
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.73 E-value=0.034 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=31.0
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 369999999999999999999999999999975
No 489
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.71 E-value=0.042 Score=52.49 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=34.1
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANCIASLWQNR 61 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~gg~w~~~ 61 (408)
.+||+|+|-|..-.-+|..|++.|.+|+-+|+++.-||.|...
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl 46 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASL 46 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcc
Confidence 3699999999999999999999999999999999999988653
No 490
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.037 Score=50.37 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=31.1
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999875
No 491
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.68 E-value=0.043 Score=45.45 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.0
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
..+|+|+|+|.+|..||..|..+|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 5689999999999999999999999999999864
No 492
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.62 E-value=0.061 Score=42.74 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=31.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCC-EEEEecCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVP-FIILERAN 52 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~lie~~~ 52 (408)
.++++|||+|-+|-+++..|+..|.+ ++|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 56899999999999999999999986 99999864
No 493
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.62 E-value=0.042 Score=50.48 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=32.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.++|.|||+|..|...|..++..|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 45799999999999999999999999999999753
No 494
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.59 E-value=0.051 Score=44.04 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=29.5
Q ss_pred cEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 035488 22 PVIVGAGPSGLAVAAGLKNQGVPFIILERAN 52 (408)
Q Consensus 22 vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~ 52 (408)
|+|+|+|..|...|..|++.|.+|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999875
No 495
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.04 Score=49.96 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 20 NGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 20 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
.+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999999864
No 496
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.56 E-value=0.038 Score=53.03 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=32.2
Q ss_pred cCCcEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 035488 19 VNGPVIVGAGPSGLAVAAGLKNQGVPFIILERANC 53 (408)
Q Consensus 19 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~ 53 (408)
+++|.|||.|..|+..|..|++.|++|+.+|+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 45799999999999999999999999999998763
No 497
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.46 E-value=0.072 Score=45.62 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEEec
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRS 208 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~ 208 (408)
+..+++|+|||||..|..=+..|++.|.+|+++...
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 357899999999999999999999999999988543
No 498
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.40 E-value=0.047 Score=44.59 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCCCCeEEEEccCCcHHHHHHHHhccCCccEEEE
Q 035488 173 SYRGKRVLVVGCGNSGMEVSLDLCNHNAKPSMVV 206 (408)
Q Consensus 173 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~ 206 (408)
...+++|+|||||.+|...+..|.+.|++|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3578999999999999999999999999999883
No 499
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.18 E-value=0.5 Score=47.60 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=29.0
Q ss_pred CeEEEEccCCcHHHHHHHHhccC--CccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHN--AKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g--~~V~~~~r~~ 209 (408)
-.|+|||+|..|+-+|..+++.| .+|+++.+.+
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 36999999999999999999774 7899998865
No 500
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.18 E-value=0.047 Score=52.47 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=31.1
Q ss_pred CeEEEEccCCcHHHHHHHHhccCCccEEEEecC
Q 035488 177 KRVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSS 209 (408)
Q Consensus 177 ~~v~VvG~G~~a~e~a~~l~~~g~~V~~~~r~~ 209 (408)
++|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
Done!