BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035490
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%)
Query: 42 YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
+ L G + +G+LS LR + + N GEIP+E+ + +LETL++ N +G +P+ L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
S C+NL +NN+L GEIP+ IG L L L + N
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 37 LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
LD+ Y L G++ +G++ +L +N+ N G IP E+G+L L L ++ N G
Sbjct: 634 LDM-SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 97 MPTNLSRCSNLIAFHANNNKLAGEIPE 123
+P +S + L +NN L+G IPE
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD 90
+ K + + + L G + + N + L I++++N GEIP+ IG L +L L +++
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 91 NSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEI 125
NSFSG +P L C +LI N N G IP +
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSF-LRHINIADNSFHGEI-PREIGNLF-SLETL 86
+ + + LDL + G L + NLS L ++++ N+F G I P N +L+ L
Sbjct: 338 KMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
+ +N F+G +P LS CS L++ H + N L+G IP +G L KL+ L + N+L
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 47 GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN 106
G SP N + ++++ N G IP+EIG++ L L + N SG +P +
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 107 LIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
L ++NKL G IP+ + L L ++ + N L+
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
L+ + + +N F G+IP + N L +L ++ N SG +P++L S L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
GEIP+E+ + L+ L + N LT
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLT 476
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 51 PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
P++G+ S L+H++I+ N G+ R I L+ L I+ N F G +P +L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 111 HANNNKLAGEIPE 123
NK GEIP+
Sbjct: 272 SLAENKFTGEIPD 284
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL 86
C + + +L L+ G + P + N S L ++++ N G IP +G+L L L
Sbjct: 386 CQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
+ N G +P L L + N L GEIP + L +S+ N LT
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 45 LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRC 104
L G + ++G L L + +++NSF G IP E+G+ SL L + N F+G +P + +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 105 SNLIA 109
S IA
Sbjct: 559 SGKIA 563
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 23 TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFS 82
TG+ + LD+ + L G S + + L+ +NI+ N F G IP L S
Sbjct: 211 TGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKS 267
Query: 83 LETLMITDNSFSGLMPTNLS-RCSNLIAFHANNNKLAGEIPEEIG 126
L+ L + +N F+G +P LS C L + N G +P G
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
L+H+ I+ N G++ ++ +LE L ++ N+FS +P L CS L + NKL+
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 119 GEIPEEIGCLFKLQKLSIRRN 139
G+ I +L+ L+I N
Sbjct: 234 GDFSRAISTCTELKLLNISSN 254
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 38 DLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLM 97
+L ++Q +R S + LS NI + G N S+ L ++ N SG +
Sbjct: 589 NLLEFQGIR---SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 98 PTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
P + L + +N ++G IP+E+G L L L + N L
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 54 GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHA 112
G L ++++ N F+G +P G+ LE+L ++ N+FSG +P + L + L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 113 NNNKLAGEIPEEI 125
+ N+ +GE+PE +
Sbjct: 348 SFNEFSGELPESL 360
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%)
Query: 42 YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
+ L G + +G+LS LR + + N GEIP+E+ + +LETL++ N +G +P+ L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
S C+NL +NN+L GEIP+ IG L L L + N
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 37 LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
LD+ Y L G++ +G++ +L +N+ N G IP E+G+L L L ++ N G
Sbjct: 637 LDM-SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 97 MPTNLSRCSNLIAFHANNNKLAGEIPE 123
+P +S + L +NN L+G IPE
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD 90
+ K + + + L G + + N + L I++++N GEIP+ IG L +L L +++
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 91 NSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEI 125
NSFSG +P L C +LI N N G IP +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSF-LRHINIADNSFHGEI-PREIGNLF-SLETL 86
+ + + LDL + G L + NLS L ++++ N+F G I P N +L+ L
Sbjct: 341 KMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
+ +N F+G +P LS CS L++ H + N L+G IP +G L KL+ L + N+L
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 47 GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN 106
G SP N + ++++ N G IP+EIG++ L L + N SG +P +
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 107 LIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
L ++NKL G IP+ + L L ++ + N L+
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
L+ + + +N F G+IP + N L +L ++ N SG +P++L S L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
GEIP+E+ + L+ L + N LT
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLT 479
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 51 PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
P++G+ S L+H++I+ N G+ R I L+ L I+ N F G +P +L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 111 HANNNKLAGEIPE 123
NK GEIP+
Sbjct: 275 SLAENKFTGEIPD 287
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL 86
C + + +L L+ G + P + N S L ++++ N G IP +G+L L L
Sbjct: 389 CQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
+ N G +P L L + N L GEIP + L +S+ N LT
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 45 LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRC 104
L G + ++G L L + +++NSF G IP E+G+ SL L + N F+G +P + +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 105 SNLIA 109
S IA
Sbjct: 562 SGKIA 566
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 23 TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFS 82
TG+ + LD+ + L G S + + L+ +NI+ N F G IP L S
Sbjct: 214 TGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKS 270
Query: 83 LETLMITDNSFSGLMPTNLS-RCSNLIAFHANNNKLAGEIPEEIG 126
L+ L + +N F+G +P LS C L + N G +P G
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
L+H+ I+ N G++ ++ +LE L ++ N+FS +P L CS L + NKL+
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 119 GEIPEEIGCLFKLQKLSIRRN 139
G+ I +L+ L+I N
Sbjct: 237 GDFSRAISTCTELKLLNISSN 257
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 38 DLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLM 97
+L ++Q +R S + LS NI + G N S+ L ++ N SG +
Sbjct: 592 NLLEFQGIR---SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 98 PTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
P + L + +N ++G IP+E+G L L L + N L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 54 GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHA 112
G L ++++ N F+G +P G+ LE+L ++ N+FSG +P + L + L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 113 NNNKLAGEIPEEI 125
+ N+ +GE+PE +
Sbjct: 351 SFNEFSGELPESL 363
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 45 LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRC 104
L G + P + L+ L ++ I + G IP + + +L TL + N+ SG +P ++S
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 105 SNLIAFHANNNKLAGEIPEEIGCLFKL-QKLSIRRNLLT 142
NL+ + N+++G IP+ G KL ++I RN LT
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSF 93
+A +DL + L G S G+ + I++A NS ++ ++G +L L + +N
Sbjct: 199 LAFVDLSR-NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 94 SGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
G +P L++ L + + + N L GEIP+
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 73 IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI 121
IPRE N+F++ET+ +D SF L +N + S L AF + GE+
Sbjct: 121 IPRE--NIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAKGLIDGEV 167
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 36 KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFS 94
KLDL+ + L S L+ LR + + DN +P I L +LETL +TDN
Sbjct: 41 KLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 95 GLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
L + NL + N+L P L KL LS+ N L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 49 LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI 108
LSP + NLS L + I N + +L L+ L + N S + + L+ S L
Sbjct: 236 LSP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLN 290
Query: 109 AFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
+ NNN+L E E IG L L L + +N +T
Sbjct: 291 SLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 6 PIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIA 65
P+ T L N LG+ + R + KL+L++ Q L G S ++ + +
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLG 86
Query: 66 DNSFHGEIPREIGN-----LFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNN 115
+N +EI N L L+TL + DN S +MP + ++L + + +N
Sbjct: 87 ENKI-----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan
Small Heat Shock Protein
pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan
Small Heat Shock Protein
Length = 314
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 67 NSFHGEIPREIGNLFSLETLMITDNSFSGLM 97
S H +I NLFSLE DN+F +M
Sbjct: 44 QSLHDDIVNMHRNLFSLEPFTAMDNAFESVM 74
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
LR + +D +P+EI +L L + +N S L + +L A NNK++
Sbjct: 35 LRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
+ L KLQKL I +N L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV 115
>pdb|1LT4|A Chain A, Heat-Labile Enterotoxin Mutant S63k
Length = 247
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 4 HDPIGFTTSLNNSINLGQW-TGVTCAHRHQKVAKLDLRKYQS 44
H P G S N+S + + TG TC Q ++ + LR+YQS
Sbjct: 182 HAPQGCGNSSNSSRTITRTITGDTCNEETQNLSTIYLREYQS 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,055,033
Number of Sequences: 62578
Number of extensions: 143021
Number of successful extensions: 348
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 56
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)