Query 035490
Match_columns 142
No_of_seqs 118 out of 2694
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 4.3E-18 9.3E-23 136.6 10.8 137 3-141 41-200 (968)
2 PLN03150 hypothetical protein; 99.6 1.2E-15 2.7E-20 117.6 9.5 128 12-140 391-526 (623)
3 PLN00113 leucine-rich repeat r 99.5 2.2E-14 4.8E-19 115.4 8.9 110 32-142 475-584 (968)
4 KOG0617 Ras suppressor protein 99.4 9.7E-15 2.1E-19 94.6 -2.5 106 32-141 56-162 (264)
5 KOG0617 Ras suppressor protein 99.2 1.2E-12 2.6E-17 85.0 -0.8 106 32-141 33-139 (264)
6 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.7E-16 80.5 4.2 102 33-141 20-125 (175)
7 PLN03150 hypothetical protein; 99.2 3.6E-11 7.8E-16 93.1 6.5 84 59-142 420-503 (623)
8 KOG4194 Membrane glycoprotein 99.2 2.3E-12 4.9E-17 96.8 -1.2 109 32-141 269-377 (873)
9 KOG0472 Leucine-rich repeat pr 99.1 9.3E-12 2E-16 89.9 0.5 107 32-142 435-541 (565)
10 PF13855 LRR_8: Leucine rich r 99.0 5.4E-10 1.2E-14 61.0 3.7 9 61-69 5-13 (61)
11 PF13855 LRR_8: Leucine rich r 99.0 1.1E-09 2.3E-14 59.8 4.8 61 32-93 1-61 (61)
12 KOG4194 Membrane glycoprotein 99.0 6.3E-10 1.4E-14 84.0 4.1 107 32-141 78-185 (873)
13 KOG0618 Serine/threonine phosp 99.0 2.7E-11 5.8E-16 94.7 -3.3 104 32-140 383-487 (1081)
14 KOG1259 Nischarin, modulator o 99.0 6.1E-11 1.3E-15 83.2 -1.3 126 10-142 280-412 (490)
15 KOG0618 Serine/threonine phosp 98.9 1.2E-10 2.6E-15 91.2 -0.1 106 32-142 359-465 (1081)
16 KOG0444 Cytoskeletal regulator 98.9 5.9E-11 1.3E-15 90.4 -3.0 89 49-139 283-372 (1255)
17 KOG4237 Extracellular matrix p 98.9 1E-10 2.3E-15 84.3 -1.7 122 19-141 52-176 (498)
18 PF14580 LRR_9: Leucine-rich r 98.9 3.1E-09 6.8E-14 69.8 5.1 100 32-136 42-147 (175)
19 KOG0444 Cytoskeletal regulator 98.9 2.6E-10 5.6E-15 87.0 -0.5 105 33-141 79-185 (1255)
20 KOG1259 Nischarin, modulator o 98.8 6.3E-10 1.4E-14 78.2 -0.1 106 29-141 281-386 (490)
21 KOG0472 Leucine-rich repeat pr 98.8 2.2E-10 4.8E-15 82.9 -3.8 59 79-140 250-308 (565)
22 cd00116 LRR_RI Leucine-rich re 98.7 5.6E-09 1.2E-13 74.4 1.8 12 106-117 194-205 (319)
23 PRK15387 E3 ubiquitin-protein 98.7 4.1E-08 8.8E-13 77.5 6.2 76 58-142 383-458 (788)
24 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-08 2.4E-13 72.9 1.9 109 32-141 81-205 (319)
25 KOG0532 Leucine-rich repeat (L 98.6 1.2E-09 2.6E-14 82.1 -3.1 102 34-141 145-246 (722)
26 KOG0532 Leucine-rich repeat (L 98.6 8.1E-09 1.8E-13 77.7 0.5 104 32-142 121-224 (722)
27 PRK15370 E3 ubiquitin-protein 98.6 1.1E-07 2.5E-12 75.0 6.9 97 32-141 199-295 (754)
28 PLN03210 Resistant to P. syrin 98.6 1.3E-07 2.9E-12 78.1 7.5 101 32-138 778-878 (1153)
29 KOG4579 Leucine-rich repeat (L 98.6 1.2E-09 2.5E-14 68.6 -4.2 104 32-139 27-133 (177)
30 KOG4237 Extracellular matrix p 98.5 3.3E-08 7.2E-13 71.6 1.6 90 52-141 269-358 (498)
31 PLN03210 Resistant to P. syrin 98.5 3.8E-07 8.2E-12 75.4 7.4 104 32-139 611-714 (1153)
32 PRK15370 E3 ubiquitin-protein 98.5 8.9E-08 1.9E-12 75.6 3.6 100 32-142 325-428 (754)
33 PRK15387 E3 ubiquitin-protein 98.4 8.3E-07 1.8E-11 70.3 6.0 100 32-142 222-355 (788)
34 PF12799 LRR_4: Leucine Rich r 98.3 7.1E-07 1.5E-11 45.3 3.0 36 82-118 2-37 (44)
35 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 66.5 2.7 103 32-139 116-219 (394)
36 KOG4579 Leucine-rich repeat (L 98.3 5.1E-08 1.1E-12 61.3 -2.5 89 30-123 51-140 (177)
37 KOG1644 U2-associated snRNP A' 98.2 2.4E-06 5.1E-11 57.1 5.0 102 32-138 42-149 (233)
38 COG4886 Leucine-rich repeat (L 98.2 4E-07 8.7E-12 67.1 1.1 80 33-116 141-220 (394)
39 KOG4658 Apoptotic ATPase [Sign 98.2 6.7E-07 1.5E-11 71.9 2.4 106 32-138 545-651 (889)
40 KOG1859 Leucine-rich repeat pr 98.2 5E-08 1.1E-12 75.6 -4.3 103 32-141 187-291 (1096)
41 KOG1859 Leucine-rich repeat pr 98.1 5.2E-08 1.1E-12 75.5 -5.7 104 32-142 164-267 (1096)
42 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.3E-11 42.6 3.0 36 58-94 2-37 (44)
43 KOG0531 Protein phosphatase 1, 98.0 2.3E-06 5E-11 63.7 1.0 103 32-141 95-198 (414)
44 KOG0531 Protein phosphatase 1, 97.8 7.1E-06 1.5E-10 61.1 1.5 102 33-141 73-174 (414)
45 KOG4658 Apoptotic ATPase [Sign 97.7 2.2E-05 4.9E-10 63.3 2.9 84 31-116 570-653 (889)
46 KOG1644 U2-associated snRNP A' 97.6 9.5E-05 2E-09 49.6 4.4 102 34-141 21-125 (233)
47 KOG3207 Beta-tubulin folding c 97.6 7E-06 1.5E-10 60.5 -1.0 60 81-141 246-313 (505)
48 KOG3207 Beta-tubulin folding c 97.5 2E-05 4.4E-10 58.1 -0.3 107 32-141 222-338 (505)
49 KOG2739 Leucine-rich acidic nu 97.4 6.1E-05 1.3E-09 52.1 1.5 101 32-135 43-149 (260)
50 KOG3665 ZYG-1-like serine/thre 97.4 4.8E-05 1E-09 60.0 1.1 106 32-141 148-262 (699)
51 KOG3665 ZYG-1-like serine/thre 97.4 8.9E-05 1.9E-09 58.6 2.2 105 32-139 122-230 (699)
52 PF08263 LRRNT_2: Leucine rich 97.2 0.00016 3.4E-09 36.4 1.3 26 3-28 15-43 (43)
53 KOG1909 Ran GTPase-activating 97.2 6E-05 1.3E-09 54.2 -0.3 108 32-140 92-224 (382)
54 KOG1909 Ran GTPase-activating 97.1 6.3E-05 1.4E-09 54.1 -1.5 109 32-141 185-310 (382)
55 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 47.1 1.6 104 34-140 20-127 (260)
56 KOG2982 Uncharacterized conser 96.6 0.00074 1.6E-08 48.1 0.7 83 57-139 71-156 (418)
57 PF00560 LRR_1: Leucine Rich R 96.5 0.0017 3.6E-08 27.6 1.2 18 59-77 2-19 (22)
58 PRK15386 type III secretion pr 96.3 0.011 2.4E-07 44.1 5.5 12 106-117 157-168 (426)
59 PRK15386 type III secretion pr 96.3 0.013 2.7E-07 43.9 5.8 53 32-91 52-104 (426)
60 KOG2982 Uncharacterized conser 96.3 0.00059 1.3E-08 48.6 -1.1 83 32-116 71-157 (418)
61 KOG2123 Uncharacterized conser 95.7 0.0005 1.1E-08 48.5 -3.7 98 32-135 19-123 (388)
62 COG5238 RNA1 Ran GTPase-activa 95.6 0.029 6.3E-07 39.8 4.5 38 32-70 92-133 (388)
63 PF13306 LRR_5: Leucine rich r 95.2 0.18 3.9E-06 30.8 6.9 100 32-138 12-112 (129)
64 PF13504 LRR_7: Leucine rich r 94.9 0.016 3.4E-07 22.9 1.1 13 58-70 2-14 (17)
65 KOG2120 SCF ubiquitin ligase, 94.9 0.0013 2.8E-08 46.9 -3.7 45 27-71 229-274 (419)
66 KOG2123 Uncharacterized conser 94.6 0.0011 2.4E-08 46.9 -4.5 78 30-111 39-123 (388)
67 KOG2120 SCF ubiquitin ligase, 93.6 0.00093 2E-08 47.7 -6.6 85 32-117 185-272 (419)
68 KOG0473 Leucine-rich repeat pr 93.3 0.001 2.2E-08 45.9 -6.5 88 27-118 37-124 (326)
69 KOG0473 Leucine-rich repeat pr 93.3 0.002 4.4E-08 44.5 -5.1 87 52-141 37-123 (326)
70 COG5238 RNA1 Ran GTPase-activa 93.1 0.21 4.7E-06 35.6 4.4 67 51-118 86-170 (388)
71 smart00370 LRR Leucine-rich re 93.0 0.086 1.9E-06 23.0 1.6 14 57-70 2-15 (26)
72 smart00369 LRR_TYP Leucine-ric 93.0 0.086 1.9E-06 23.0 1.6 14 57-70 2-15 (26)
73 PF13306 LRR_5: Leucine rich r 91.6 1.3 2.9E-05 26.9 6.4 85 52-139 7-91 (129)
74 PF13516 LRR_6: Leucine Rich r 90.9 0.059 1.3E-06 23.1 -0.2 15 57-71 2-16 (24)
75 smart00365 LRR_SD22 Leucine-ri 89.7 0.32 6.8E-06 21.5 1.7 13 129-141 2-14 (26)
76 KOG3864 Uncharacterized conser 86.7 0.1 2.3E-06 35.3 -1.3 83 32-115 101-186 (221)
77 smart00368 LRR_RI Leucine rich 85.2 0.77 1.7E-05 20.4 1.6 12 130-141 3-14 (28)
78 smart00364 LRR_BAC Leucine-ric 83.6 0.7 1.5E-05 20.4 1.0 17 106-123 3-19 (26)
79 KOG3864 Uncharacterized conser 81.3 0.18 3.9E-06 34.2 -2.0 81 58-138 102-185 (221)
80 KOG1947 Leucine rich repeat pr 70.8 1 2.2E-05 33.8 -0.6 60 80-139 242-305 (482)
81 KOG3763 mRNA export factor TAP 60.3 6.2 0.00013 31.0 1.7 13 106-118 271-283 (585)
82 KOG3763 mRNA export factor TAP 53.2 6.9 0.00015 30.7 1.0 60 80-141 217-282 (585)
83 smart00367 LRR_CC Leucine-rich 40.8 17 0.00037 15.4 0.9 12 57-68 2-13 (26)
84 TIGR00864 PCC polycystin catio 29.0 33 0.00072 32.5 1.5 32 63-94 1-32 (2740)
85 TIGR00864 PCC polycystin catio 26.7 39 0.00085 32.1 1.5 34 38-72 1-34 (2740)
86 KOG4308 LRR-containing protein 26.7 1.8 3.9E-05 33.4 -5.7 86 56-141 203-302 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=4.3e-18 Score=136.63 Aligned_cols=137 Identities=29% Similarity=0.569 Sum_probs=96.5
Q ss_pred ccCCCCCcccCcCCCCCceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCC
Q 035490 3 FHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLF 81 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~ 81 (142)
+.||...+..|+...++|.|.|++|... .+++.|++++|. +.+..+..+..+++|+.|++++|.+++.+|..+. .+.
T Consensus 41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~ 118 (968)
T PLN00113 41 INDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118 (968)
T ss_pred CCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCC-ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC
Confidence 4577778889988889999999999754 689999999988 8888888888888888888888888877776554 566
Q ss_pred CCcEEEccCccccc----------------------CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490 82 SLETLMITDNSFSG----------------------LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 82 ~L~~l~l~~n~~~~----------------------~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n 139 (142)
+|+.+++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 66666666665544 34444455555555555555555455555555555555555555
Q ss_pred cC
Q 035490 140 LL 141 (142)
Q Consensus 140 ~i 141 (142)
.+
T Consensus 199 ~l 200 (968)
T PLN00113 199 QL 200 (968)
T ss_pred CC
Confidence 43
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=117.56 Aligned_cols=128 Identities=30% Similarity=0.551 Sum_probs=110.5
Q ss_pred cCcCCC---CCceeeeeEecCCC----CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc
Q 035490 12 SLNNSI---NLGQWTGVTCAHRH----QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE 84 (142)
Q Consensus 12 ~~~~~~---~~~~~~g~~~~~~~----~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (142)
+|.... ..|.|.|+.|.... ..++.|++++|. +.+.+|..+..+++|+.|++++|.+.+.+|..+..++.|+
T Consensus 391 ~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~ 469 (623)
T PLN03150 391 GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE 469 (623)
T ss_pred CCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 686421 12379999995321 358999999999 9999999999999999999999999999999999999999
Q ss_pred EEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCC-CCCCEEEccccc
Q 035490 85 TLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCL-FKLQKLSIRRNL 140 (142)
Q Consensus 85 ~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~-~~L~~L~l~~n~ 140 (142)
.|+++.|.+.+.+|..+..+++|+.|++++|.+++.+|..++.. .++..+++.+|.
T Consensus 470 ~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999999999999999999999999999999999999887653 456778887774
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=2.2e-14 Score=115.44 Aligned_cols=110 Identities=31% Similarity=0.551 Sum_probs=100.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|++++|. +.+..|..+..++.|+.|++++|.+.+.+|..+..+++|+.+++++|.+++.+|..+..+++|+.++
T Consensus 475 ~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 578899999998 8888888888899999999999999999999999999999999999999988999999999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|++.+.+|..+..+..|+.+++++|.++
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 9999999889999999999999999999763
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=9.7e-15 Score=94.63 Aligned_cols=106 Identities=30% Similarity=0.451 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc-cCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS-GLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~l 110 (142)
.+++.|++.+|+ ++ .+|..+.++++|+.|++..|.+. ..|..|+.++.|+.+|++.|.+. ..+|+.|..|..|+.+
T Consensus 56 ~nlevln~~nnq-ie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ-IE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhhcccch-hh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 667788888887 66 57888888888888888888888 78888888888888888888775 3467777778888888
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++.|.|+ -+|..++.+.+|++|.++.|.+
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 88888888 7788899999999999888753
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-12 Score=84.99 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=87.8
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|.+++|. ++ .+|+.+..+..|+.|++.+|++. .+|..++.++.|+.+++..|++. .+|.+|+.++.|+.++
T Consensus 33 s~ITrLtLSHNK-l~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCc-ee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 668888888888 66 67888888888999999999888 78888888889999998888887 6788899888999999
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+.+|.+.. .+|..|..+..|+.|.++.|.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 98888753 4677777777788888887754
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.7e-11 Score=80.48 Aligned_cols=102 Identities=27% Similarity=0.427 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccc-cCCCCCcEE
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL-SRCSNLIAF 110 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l 110 (142)
++++|++++|. ++.. ..+. .+.+|+.|++++|.++ .++ .+..++.|+.+++++|.++ .+.+.+ ..+++|+.|
T Consensus 20 ~~~~L~L~~n~-I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccc-cccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 46778888887 6642 2344 4667788888888877 444 4666778888888888887 344433 356778888
Q ss_pred EccCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIP--EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++. .+. ..+..+++|+.|++.+|++
T Consensus 94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence 88888876 332 3456677788888888775
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=3.6e-11 Score=93.07 Aligned_cols=84 Identities=27% Similarity=0.522 Sum_probs=79.7
Q ss_pred cceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccc
Q 035490 59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 59 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 138 (142)
++.|++++|.+.+.+|..+..+++|+.|+++.|.+.+.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 035490 139 NLLT 142 (142)
Q Consensus 139 n~is 142 (142)
|.++
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 9764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.17 E-value=2.3e-12 Score=96.78 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|+++.|+ +...-...+.++.+|+.|++++|.+...-++.|...+.|+.|+++.|+++..-++.|..+..|+.|+
T Consensus 269 ~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 446666777766 6654455566666667777777766655556666666666777766666643334455555555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++....-..|..+++|+.|||+.|.|
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 555555411111233444444444444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=9.3e-12 Score=89.92 Aligned_cols=107 Identities=31% Similarity=0.465 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+++.-|++++|- +. .+|..++++..|+.++++.|.|. .+|..+..+..++++-.+.|++...-++++..|..|.+++
T Consensus 435 ~kLt~L~L~NN~-Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 435 QKLTFLDLSNNL-LN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hcceeeecccch-hh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 334445555543 33 34555555555555555555554 4454444444445544445555534445688899999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+.+|.+. .+|..+++|.+|++|++.+|+|.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999 88999999999999999999874
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=5.4e-10 Score=61.03 Aligned_cols=9 Identities=11% Similarity=0.623 Sum_probs=3.3
Q ss_pred eeeeccCcc
Q 035490 61 HINIADNSF 69 (142)
Q Consensus 61 ~L~l~~n~l 69 (142)
+|++++|.+
T Consensus 5 ~L~l~~n~l 13 (61)
T PF13855_consen 5 SLDLSNNKL 13 (61)
T ss_dssp EEEETSSTE
T ss_pred EEECCCCCC
Confidence 333333333
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=1.1e-09 Score=59.85 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=53.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSF 93 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~ 93 (142)
++++.|++++|. +....+..|..+++|++|++++|.+....+..+..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999 9977667888999999999999999966667888999999999998864
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=6.3e-10 Score=83.96 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
...+.|++++|. +...-+..|..++.|+++.+.+|.++ .+|.......+++.|++..|.|+..-.+.+..++.|+.++
T Consensus 78 ~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345668888887 77666666677777777777777777 6665444444566666666666544444555556666666
Q ss_pred ccCceeeecCchh-hhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~i 141 (142)
++.|.++ .+|.. |..-.+++.|+|++|.|
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccc
Confidence 6666665 43322 22223455555555554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=2.7e-11 Score=94.73 Aligned_cols=104 Identities=24% Similarity=0.335 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. +.......+.++..|++|++++|+++ .+|..+..+..|+++.+.+|.+. ..| .+..++.|+.+|
T Consensus 383 ~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 667888888887 66433345666777788888888887 77777777777888877777776 556 566778888888
Q ss_pred ccCceeeec-CchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGE-IPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~ 140 (142)
++.|.++.. +|. -...++|++||++||.
T Consensus 459 lS~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhh-hCCCcccceeeccCCc
Confidence 888877622 222 2223678888888874
No 14
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=6.1e-11 Score=83.23 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=90.0
Q ss_pred cccCcCCC-CCceeeeeEecCCC----CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc
Q 035490 10 TTSLNNSI-NLGQWTGVTCAHRH----QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE 84 (142)
Q Consensus 10 ~~~~~~~~-~~~~~~g~~~~~~~----~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 84 (142)
+..|++-+ -.-+++.+.|.... +.++.|++++|. +.. -..+..+++|++||+++|.++ .+...=..+.+..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 45566532 23344556665433 778888888888 663 234777888888888888887 5554445678888
Q ss_pred EEEccCcccccCCCccccCCCCCcEEEccCceeeecCc--hhhhCCCCCCEEEcccccCC
Q 035490 85 TLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP--EEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 85 ~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~is 142 (142)
++.++.|.+.. -.++..+.+|..|++.+|+|+ .+- ..++.+++|+++.+.+|+|+
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 88888888863 256777888999999999987 432 35788899999999998874
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=1.2e-10 Score=91.19 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC-hhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP-REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
+.++.|.+.+|. +++...+.+.++++|+.|++++|.+. ..| ..+.++..|+.|++++|+++ .+|..+..+..|++|
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 668999999999 99998889999999999999999998 666 45678899999999999999 689999999999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
...+|++. .+| .+..++.|+.+|+++|.++
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 99999999 788 7888999999999999874
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.91 E-value=5.9e-11 Score=90.37 Aligned_cols=89 Identities=33% Similarity=0.531 Sum_probs=55.6
Q ss_pred cCccccCccccceeeeccCccee-eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhC
Q 035490 49 LSPYVGNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGC 127 (142)
Q Consensus 49 ~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~ 127 (142)
+|..+..++.|+.|.+.+|+++- -+|..++.+..|+.+.+++|.+. ..|+++..+..|+.|.+..|++. ++|+.+.-
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl 360 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL 360 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence 44444555555555555555432 24555555555555555555555 55677777777777777777776 67777777
Q ss_pred CCCCCEEEcccc
Q 035490 128 LFKLQKLSIRRN 139 (142)
Q Consensus 128 ~~~L~~L~l~~n 139 (142)
++-|+.||++.|
T Consensus 361 L~~l~vLDlreN 372 (1255)
T KOG0444|consen 361 LPDLKVLDLREN 372 (1255)
T ss_pred cCCcceeeccCC
Confidence 777777777766
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=1e-10 Score=84.25 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=95.5
Q ss_pred CceeeeeEecCCC--CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccC-ccccc
Q 035490 19 LGQWTGVTCAHRH--QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD-NSFSG 95 (142)
Q Consensus 19 ~~~~~g~~~~~~~--~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~-n~~~~ 95 (142)
.|.-.|++-++.. .+.+++.+..|. ++.+.+..|..+.+|+.||+++|.++...|+.|..++.+..+-+.+ |+|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 4444444433332 778999999999 8877777899999999999999999977889999999888776555 89984
Q ss_pred CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 96 LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 96 ~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.-...|.++.+++.|.+.-|++.....+.+..++++..|.+..|.+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 4335688888899998888888866666788888888888777754
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=3.1e-09 Score=69.84 Aligned_cols=100 Identities=25% Similarity=0.301 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhh-cCCCCCcEEEccCcccccCC-CccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLM-PTNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~ 109 (142)
.+++.|++++|. +... +.+..++.|+.|++++|.++ .+.+.+ ..+++|+.+++++|++...- -..+..+++|+.
T Consensus 42 ~~L~~L~Ls~N~-I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQ-ITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS---S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCC-Cccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 579999999999 8853 35778899999999999999 565444 46899999999999997421 245777899999
Q ss_pred EEccCceeeecCch----hhhCCCCCCEEEc
Q 035490 110 FHANNNKLAGEIPE----EIGCLFKLQKLSI 136 (142)
Q Consensus 110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l 136 (142)
|++.+|.++ ..+. .+..+|+|+.||-
T Consensus 118 L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 999999998 4332 4677899999874
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=2.6e-10 Score=86.95 Aligned_cols=105 Identities=21% Similarity=0.337 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc-ccCCCCCcEE
Q 035490 33 KVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAF 110 (142)
Q Consensus 33 ~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~~L~~l 110 (142)
.++.+.++.|+ +. ..+|+.+..+.-|+.||+++|++. ..|..+-...++..++++.|+|. .+|.. +-+++.|-.|
T Consensus 79 ~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 34455555555 33 335666666666666677777666 66666666666666677776666 34543 4456666667
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++.|++. .+|.....+..|+.|++++|++
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 77777776 6666666666777777777764
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=6.3e-10 Score=78.23 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=82.6
Q ss_pred CCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc
Q 035490 29 HRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI 108 (142)
Q Consensus 29 ~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~ 108 (142)
+.++.++++++++|. ++ .+..+..-.+.++.|++++|.+. .+. .+..+++|+.+|+++|.+. .+-+.-..+.+++
T Consensus 281 dTWq~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 445778889999998 66 45566666788899999999988 443 3778889999999999887 5555555677888
Q ss_pred EEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 109 AFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 109 ~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.|.++.|.+. .+ ..++.+.+|..||+++|.|
T Consensus 356 tL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 356 TLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeehhhhhHh-hh-hhhHhhhhheeccccccch
Confidence 9999999887 54 4577788899999999986
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.76 E-value=2.2e-10 Score=82.94 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=30.4
Q ss_pred CCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 79 NLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 79 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
.+.++..+|+.+|+++ ..|.++.-+.+|..+++++|.++ .+|..++++ .|+.|.+.||+
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence 3444555555555555 44555544555555555555555 444455554 45555555554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=5.6e-09 Score=74.40 Aligned_cols=12 Identities=50% Similarity=0.576 Sum_probs=5.1
Q ss_pred CCcEEEccCcee
Q 035490 106 NLIAFHANNNKL 117 (142)
Q Consensus 106 ~L~~l~l~~n~~ 117 (142)
.|+.+++++|.+
T Consensus 194 ~L~~L~L~~n~i 205 (319)
T cd00116 194 NLEVLDLNNNGL 205 (319)
T ss_pred CCCEEeccCCcc
Confidence 444444444443
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.69 E-value=4.1e-08 Score=77.51 Aligned_cols=76 Identities=22% Similarity=0.367 Sum_probs=52.1
Q ss_pred ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcc
Q 035490 58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIR 137 (142)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~ 137 (142)
.|+.|++++|.++ .+|.. ..+|+.+++++|.++ .+|... ..|+.|++++|+++ .+|..+..+++|+.++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 3555555555555 34322 245666777777766 345432 35677888888888 788888889999999999
Q ss_pred cccCC
Q 035490 138 RNLLT 142 (142)
Q Consensus 138 ~n~is 142 (142)
+|+|+
T Consensus 454 ~N~Ls 458 (788)
T PRK15387 454 GNPLS 458 (788)
T ss_pred CCCCC
Confidence 99875
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.1e-08 Score=72.92 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=75.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccc---cceeeeccCcceee----CChhhcCC-CCCcEEEccCcccccC----CCc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSF---LRHINIADNSFHGE----IPREIGNL-FSLETLMITDNSFSGL----MPT 99 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~l~l~~n~~~~~----~p~ 99 (142)
++++.|++++|. +.+..+..+..+.. |++|++++|.+++. +...+..+ ++|+.++++.|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 678899998888 76555555545544 89999998887732 22344556 7889999998888732 233
Q ss_pred cccCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490 100 NLSRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i 141 (142)
.+..+.+|+.++++.|.+++. ++..+..+++|+.|++++|.+
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 455667899999998888732 223344456788888887765
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=1.2e-09 Score=82.09 Aligned_cols=102 Identities=26% Similarity=0.417 Sum_probs=63.6
Q ss_pred EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490 34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113 (142)
Q Consensus 34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~ 113 (142)
|+.|.+++|. ++ .+|..+..+.+|.+||.++|.+. .+|..++.+.+|+.+.+..|.+. .+|..+.. -.|..|+++
T Consensus 145 Lkvli~sNNk-l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 145 LKVLIVSNNK-LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred ceeEEEecCc-cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 4444445554 33 35555555555666666666665 55556666666666666666665 45655553 346777777
Q ss_pred CceeeecCchhhhCCCCCCEEEcccccC
Q 035490 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.|++. .+|-.|..|..|++|.|.+|++
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCC
Confidence 77777 6777777777777777777765
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=8.1e-09 Score=77.71 Aligned_cols=104 Identities=28% Similarity=0.458 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..++.++++.|+ +. .+|..+..++ |+.|.+++|+++ .+|+.++.+.+|..++.+.|.+. .+|..+..+.+|+.+.
T Consensus 121 ~~lt~l~ls~Nq-lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 121 EALTFLDLSSNQ-LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hHHHHhhhccch-hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 568888899998 66 5787777777 899999999999 89999998899999999999997 5788899999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+..|++. .+|+.+..++ |..||+++|+|+
T Consensus 196 vrRn~l~-~lp~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred Hhhhhhh-hCCHHHhCCc-eeeeecccCcee
Confidence 9999999 8888888665 899999999874
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.62 E-value=1.1e-07 Score=75.00 Aligned_cols=97 Identities=21% Similarity=0.353 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+.++.|++++|. ++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.+++++|.+. .+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~-Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNE-LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCC-CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 456667777776 66 3444332 35667777777666 5554432 35666666666665 4555443 3566777
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++ .+|..+. .+|+.|++++|.|
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCcc
Confidence 7777666 5555432 3566777766655
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.62 E-value=1.3e-07 Score=78.07 Aligned_cols=101 Identities=24% Similarity=0.248 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+.|+.|++++|. ....+|..+..+++|+.|++++|...+.+|..+ .+++|+.+++++|.....+|.. ..+++.|+
T Consensus 778 ~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred ccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 468888888887 566788888889999999998876444676554 5677777777776543344432 24567777
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~ 138 (142)
++.|.++ .+|..+..+++|+.|++.+
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 7777776 6666666677777777665
No 29
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.57 E-value=1.2e-09 Score=68.61 Aligned_cols=104 Identities=26% Similarity=0.287 Sum_probs=63.2
Q ss_pred CcEEEEEcCCCCccee--ecCccccCccccceeeeccCcceeeCChhhcCC-CCCcEEEccCcccccCCCccccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRG--FLSPYVGNLSFLRHINIADNSFHGEIPREIGNL-FSLETLMITDNSFSGLMPTNLSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~~l~~L~ 108 (142)
+.+..+++++++ +.. ..+-.+....+|+..++++|.+. ..|+.+... +..++++++.|.++ .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 556666666665 431 11122333445666677777776 556555433 36677777777776 5676677777777
Q ss_pred EEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490 109 AFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 109 ~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n 139 (142)
.+++..|.+. ..|+.+..+.++..|+...|
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 7777777776 55666665666666665554
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=3.3e-08 Score=71.63 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=69.1
Q ss_pred cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490 52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131 (142)
Q Consensus 52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L 131 (142)
.|..+++|++|++++|++++.-+..|..+..++.+.+..|++...--..|.++..|++|++.+|+|+..-|..|..+-.|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 46778888888888888886666777788888888888888875444567777888888888888885556667777778
Q ss_pred CEEEcccccC
Q 035490 132 QKLSIRRNLL 141 (142)
Q Consensus 132 ~~L~l~~n~i 141 (142)
..|.+-.|++
T Consensus 349 ~~l~l~~Np~ 358 (498)
T KOG4237|consen 349 STLNLLSNPF 358 (498)
T ss_pred eeeehccCcc
Confidence 8888877765
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.51 E-value=3.8e-07 Score=75.44 Aligned_cols=104 Identities=24% Similarity=0.285 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+|+.|++.++. +. .++..+..+++|+.++++++...+.+| .+..+++|+.+++.+|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~-l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSK-LE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcc-cc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 456666666665 54 344445556666666666554333444 355566666666666554445666666666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n 139 (142)
++++.....+|..+ .+.+|+.|++++|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 66543222455433 3445555555543
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.51 E-value=8.9e-08 Score=75.63 Aligned_cols=100 Identities=20% Similarity=0.358 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. ++. +|..+. +.|+.|++++|.++ .+|..+ .+.|+.|++++|.++ .+|..+. ..|+.++
T Consensus 325 ~sL~~L~Ls~N~-Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 325 PGLKTLEAGENA-LTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred ccceeccccCCc-ccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 456666666666 553 443332 46777777777776 555544 246777777777776 4565443 3567777
Q ss_pred ccCceeeecCchhh----hCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEI----GCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~----~~~~~L~~L~l~~n~is 142 (142)
+++|++. .+|..+ ...+.+..+++.+|+|+
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7777776 555433 23466788888888764
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.37 E-value=8.3e-07 Score=70.30 Aligned_cols=100 Identities=24% Similarity=0.289 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-----------------CCCCCcEEEccCcccc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-----------------NLFSLETLMITDNSFS 94 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~l~l~~n~~~ 94 (142)
.+++.|.+.+|. ++. +|. .++.|+.|++++|.++ .+|.... .+..|..+++++|+++
T Consensus 222 ~~L~~L~L~~N~-Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCc-CCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence 345666666665 553 332 1345666666666665 3432110 1123444555555554
Q ss_pred cCCCccccCCCCCcEEEccCceeeecCchhh-------------hCC----CCCCEEEcccccCC
Q 035490 95 GLMPTNLSRCSNLIAFHANNNKLAGEIPEEI-------------GCL----FKLQKLSIRRNLLT 142 (142)
Q Consensus 95 ~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~-------------~~~----~~L~~L~l~~n~is 142 (142)
.+|.. .++|+.|++++|+++ .+|... ..+ .+|+.|++++|+|+
T Consensus 296 -~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 296 -SLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred -ccccc---ccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 33431 256788888888877 443311 111 25677777777663
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=7.1e-07 Score=45.34 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCcEEEccCcccccCCCccccCCCCCcEEEccCceee
Q 035490 82 SLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118 (142)
Q Consensus 82 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~ 118 (142)
+|+.+++++|+++ .+|..+..+++|+.+++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666677777666 44555666667777777766665
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=5.1e-07 Score=66.49 Aligned_cols=103 Identities=30% Similarity=0.504 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCcc-ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLS-FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
..++.|.+.+|. +. .+++....+. +|+.|+++.|.+. .+|..+..++.|+.++++.|.+. .+|......+.|+.+
T Consensus 116 ~~l~~L~l~~n~-i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNN-IT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcc-cc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 346666666666 55 3344444442 6677777777766 55555666677777777777766 444444355666677
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccc
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n 139 (142)
++++|++. .+|...+....|+.+.++.|
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 77777776 55554433344666666655
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=5.1e-08 Score=61.33 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCCcEEEEEcCCCCcceeecCccccC-ccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc
Q 035490 30 RHQKVAKLDLRKYQSLRGFLSPYVGN-LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI 108 (142)
Q Consensus 30 ~~~~l~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~ 108 (142)
...+++.+++++|. |.. .|+.|.. ++.++.+++++|.++ .+|..+..|+.|+.++++.|.+. ..|+.+..+.++.
T Consensus 51 ~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 34779999999999 875 4544444 567899999999999 89989999999999999999998 6688777788888
Q ss_pred EEEccCceeeecCch
Q 035490 109 AFHANNNKLAGEIPE 123 (142)
Q Consensus 109 ~l~l~~n~~~~~~p~ 123 (142)
.|+...|... +++-
T Consensus 127 ~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 127 MLDSPENARA-EIDV 140 (177)
T ss_pred HhcCCCCccc-cCcH
Confidence 8888888876 5553
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.24 E-value=2.4e-06 Score=57.06 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=77.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~ 109 (142)
.....+++++|. +.. .+.|+.++.|++|.+.+|.++...|.--..++.|..|.+.+|.+. .+. ..+..+++|+.
T Consensus 42 d~~d~iDLtdNd-l~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccc-hhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 457788899998 653 345788899999999999999444443345678999999999987 332 45778899999
Q ss_pred EEccCceeeecCch----hhhCCCCCCEEEccc
Q 035490 110 FHANNNKLAGEIPE----EIGCLFKLQKLSIRR 138 (142)
Q Consensus 110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l~~ 138 (142)
|.+-+|.++ .... .+..+++|+.||+..
T Consensus 118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 999999987 3332 356788999999754
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.22 E-value=4e-07 Score=67.05 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 112 (142)
+++.|++++|. +. .+|..+..++.|+.|+++.|.+. .++...+.++.|+.+++++|.+. .+|........|+.+.+
T Consensus 141 nL~~L~l~~N~-i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNK-IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccc-hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 68888888887 65 34455677788888888888887 66655556677777777777776 44554333334555555
Q ss_pred cCce
Q 035490 113 NNNK 116 (142)
Q Consensus 113 ~~n~ 116 (142)
+.|+
T Consensus 217 ~~N~ 220 (394)
T COG4886 217 SNNS 220 (394)
T ss_pred cCCc
Confidence 5553
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=6.7e-07 Score=71.87 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=82.0
Q ss_pred CcEEEEEcCCCCc-ceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQS-LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
+++++|-+..|.. +.......|..++.|+.||+++|.--+.+|..++.+.+|+.|+++...++ .+|..+.++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 5677777777741 22222334677899999999988766689999999999999999999998 789999999999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEccc
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 138 (142)
++..+.....+|.....+.+|++|.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 9987765435555566688888888754
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=5e-08 Score=75.60 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=58.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+.++.|++++|+ +... +.+..+++|++||+++|.+. .+|.--..-..|+.|.+.+|.++.. .++.++.+|+.|+
T Consensus 187 ~ale~LnLshNk-~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNK-FTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhh-hhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccc
Confidence 556667777776 5532 25566666777777777766 4442111112366666777666522 4455666677777
Q ss_pred ccCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIP--EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i 141 (142)
+++|-+. .+. ..+..+..|+.|.|.||++
T Consensus 261 lsyNll~-~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLS-EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhh-cchhhhHHHHHHHHHHHhhcCCcc
Confidence 7776665 221 1233445566666766654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=5.2e-08 Score=75.54 Aligned_cols=104 Identities=23% Similarity=0.298 Sum_probs=84.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..|...+++.|. +. .+..++.-++++++|++++|++.. .. .+..++.|.+||++.|.+. .+|..-..-..|..|.
T Consensus 164 n~L~~a~fsyN~-L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNR-LV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHhhhhcchhh-HH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 557777888888 66 466778888999999999999983 33 6788999999999999998 6676433334599999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+.+|.++ ++ ..+.++.+|..||++.|-|+
T Consensus 239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ecccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence 9999998 55 46788999999999998763
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.8e-06 Score=42.62 Aligned_cols=36 Identities=33% Similarity=0.623 Sum_probs=19.2
Q ss_pred ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490 58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 94 (142)
+|+.|++++|.++ .+|+.+..++.|+.+++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3555555555555 44444555556666666555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=2.3e-06 Score=63.67 Aligned_cols=103 Identities=18% Similarity=0.333 Sum_probs=58.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..++.|++.+|. +.+.. ..+..+++|+.|++++|.++ .+. .+..+..|+.|++.+|.+... ..+..+..|+.++
T Consensus 95 ~~l~~l~l~~n~-i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNK-IEKIE-NLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccc-hhhcc-cchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 556666666666 55322 11455666777777777766 222 244555566677777776522 3344466666667
Q ss_pred ccCceeeecCchh-hhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~i 141 (142)
+++|++. .+... ...+.+++.+.+.+|.+
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCch
Confidence 7776666 33221 24445555555555543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=7.1e-06 Score=61.06 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 112 (142)
.++.+.++.|. +.. .-..+..+.+++.+++..|.+. .+...+..+.+|+.++++.|.|+.. .++..++.|+.|++
T Consensus 73 ~l~~l~l~~n~-i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNL-IAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhh-hhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 34445556665 443 2234677888999999999988 5554467789999999999999843 45666777999999
Q ss_pred cCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 113 ~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.+|.++ .+ ..+..+..|+.+++++|.+
T Consensus 148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 148 SGNLIS-DI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred ccCcch-hc-cCCccchhhhcccCCcchh
Confidence 999998 54 3455578889999998876
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.73 E-value=2.2e-05 Score=63.35 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.+.++.|++++|. --+.+|..++.+-+|+.|++++..+. .+|..+..+..|.+|++..+.....+|.....+.+|+.|
T Consensus 570 m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 3889999999988 55689999999999999999999999 999999999999999999877654556667778999999
Q ss_pred EccCce
Q 035490 111 HANNNK 116 (142)
Q Consensus 111 ~l~~n~ 116 (142)
.+....
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 886544
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=9.5e-05 Score=49.59 Aligned_cols=102 Identities=24% Similarity=0.367 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490 34 VAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112 (142)
Q Consensus 34 l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 112 (142)
-+++++++.. ++.. ..++ .+.+...+|++.|.+. .+ +.+..+..|.+|.+.+|.|+...|.--..++.|..|.+
T Consensus 21 e~e~~LR~lk-ip~i--enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLK-IPVI--ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccc-ccch--hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 3455666665 3311 1111 1345567899999987 33 35778899999999999999666654445678999999
Q ss_pred cCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490 113 NNNKLAGEIP--EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 113 ~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i 141 (142)
.+|.+. .+. ..+..+++|+.|.+-+|.+
T Consensus 96 tnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 96 TNNSIQ-ELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cCcchh-hhhhcchhccCCccceeeecCCch
Confidence 999987 443 2467788999999988875
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=7e-06 Score=60.47 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=28.8
Q ss_pred CCCcEEEccCcccccCCC--ccccCCCCCcEEEccCceeeec-Cchh-----hhCCCCCCEEEcccccC
Q 035490 81 FSLETLMITDNSFSGLMP--TNLSRCSNLIAFHANNNKLAGE-IPEE-----IGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 81 ~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n~~~~~-~p~~-----~~~~~~L~~L~l~~n~i 141 (142)
..|+.|++++|.+-.. + .....++.|..++++.+.+... .|.. ...+++|+.|++..|+|
T Consensus 246 ~~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hHHhhccccCCccccc-ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 3445555555554321 2 2234455555555555555411 1211 12345677777777665
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=2e-05 Score=58.12 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC--hhhcCCCCCcEEEccCcccccC-CCcc-----ccC
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP--REIGNLFSLETLMITDNSFSGL-MPTN-----LSR 103 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~~~~~-~p~~-----~~~ 103 (142)
+.++.|++..|. ....-..+...+..|+.||+++|.+. ..+ .....++.|..++++.+++... .|+. ...
T Consensus 222 Psl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 222 PSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CcHHHhhhhccc-ccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 445555555553 11111122233455666666666655 222 2334555666666666665421 1221 223
Q ss_pred CCCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490 104 CSNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 104 l~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i 141 (142)
.++|+.|++..|++. .++. .+..+.+|+.|...+|.+
T Consensus 300 f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence 456667777766664 3332 222334555555545443
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=6.1e-05 Score=52.06 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccC--cceeeCChhhcCCCCCcEEEccCcccccC-CCccccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADN--SFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~ 108 (142)
..++.+++.+.. ++. -..+..+++|++|.++.| .+.+.++--...+++|+++.++.|++... .-..+..+.+|.
T Consensus 43 ~~le~ls~~n~g-ltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVG-LTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccc-eee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445555555554 332 123455677777788777 44444443344457778888887777621 012344455666
Q ss_pred EEEccCceeeec--Cc-hhhhCCCCCCEEE
Q 035490 109 AFHANNNKLAGE--IP-EEIGCLFKLQKLS 135 (142)
Q Consensus 109 ~l~l~~n~~~~~--~p-~~~~~~~~L~~L~ 135 (142)
.|++..+..+.. .. ..|.-+++|++||
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666666555421 11 1233445666554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=4.8e-05 Score=60.05 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccccc-CCCccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG-LMPTNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~~~~l~~L~~ 109 (142)
+.|++|.+.+-. +. +....-..++++|..||+++..++ .+ .+++.+.+|+.|.+.+=.+.. ..-..+..+++|++
T Consensus 148 PsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCce-ecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455566555544 32 112223345566666666666665 22 455566666666554444331 11123455677777
Q ss_pred EEccCceeeecCch-------hhhCCCCCCEEEcccccC
Q 035490 110 FHANNNKLAGEIPE-------EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 110 l~l~~n~~~~~~p~-------~~~~~~~L~~L~l~~n~i 141 (142)
||++..... ..+. .-..++.|+.||.++..+
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 777765543 1121 112357777777776654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=8.9e-05 Score=58.58 Aligned_cols=105 Identities=24% Similarity=0.320 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCCcceeecCccccC-ccccceeeeccCcceeeC-ChhhcCCCCCcEEEccCcccccCCCccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGN-LSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 109 (142)
.+|+.|++++...+...++..++. +|.|+.|.+.+-.+.... ..-....++|..||+++..++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567777777766454445544444 577777777665554221 12233567777777777777633 56667777777
Q ss_pred EEccCceeeecCc--hhhhCCCCCCEEEcccc
Q 035490 110 FHANNNKLAGEIP--EEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 110 l~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n 139 (142)
|.+.+=.|. ... ..+..+++|+.||++..
T Consensus 200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCC-chhhHHHHhcccCCCeeecccc
Confidence 766654554 211 23456777777777653
No 52
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.25 E-value=0.00016 Score=36.38 Aligned_cols=26 Identities=42% Similarity=0.806 Sum_probs=18.2
Q ss_pred cc-CCCCCcccCcCC--CCCceeeeeEec
Q 035490 3 FH-DPIGFTTSLNNS--INLGQWTGVTCA 28 (142)
Q Consensus 3 ~~-~~~~~~~~~~~~--~~~~~~~g~~~~ 28 (142)
+. ||.+++.+|+.. +++|.|.|++|.
T Consensus 15 l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 15 LNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp TT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cccccCcccccCCCcCCCCCeeeccEEeC
Confidence 45 677889999987 799999999994
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.24 E-value=6e-05 Score=54.18 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCCcceeecCcc----ccCccccceeeeccCcceeeCC-------------hhhcCCCCCcEEEccCcccc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPY----VGNLSFLRHINIADNSFHGEIP-------------REIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~l~l~~n~~~ 94 (142)
++|+.|++++|. |....++. +.+...|++|.+.+|.+...-- .....-+.|+.+...+|++.
T Consensus 92 ~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 578999999988 66433322 3445667888888887652110 11223345666666666654
Q ss_pred cC----CCccccCCCCCcEEEccCceeee----cCchhhhCCCCCCEEEccccc
Q 035490 95 GL----MPTNLSRCSNLIAFHANNNKLAG----EIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 95 ~~----~p~~~~~l~~L~~l~l~~n~~~~----~~p~~~~~~~~L~~L~l~~n~ 140 (142)
.. +...+...+.|+.+.+.+|.|.. .+...+..++.|+.||++.|-
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 22 11233344555555555555431 112234455556666665553
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.08 E-value=6.3e-05 Score=54.08 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCCcceee----cCccccCccccceeeeccCccee----eCChhhcCCCCCcEEEccCcccccCCCccc--
Q 035490 32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHG----EIPREIGNLFSLETLMITDNSFSGLMPTNL-- 101 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~-- 101 (142)
+.++.+.+.+|. +... +-..+...++|+.||+..|.|+. .+...++.+++|+.+++.++.+...-...+
T Consensus 185 ~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 456666666665 4311 22335556777777777777763 233455666777777777777764322211
Q ss_pred ---cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490 102 ---SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 102 ---~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i 141 (142)
...++|+.+.+.+|.++.. +.......+.|..|++.+|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1246777777777777531 112234456777777777765
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00066 Score=47.06 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=62.2
Q ss_pred EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc--ccccCCCccccCCCCCcEEE
Q 035490 34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN--SFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n--~~~~~~p~~~~~l~~L~~l~ 111 (142)
++.+.+..+....+.+..-...+..|+.+.+.+..++ .+. .+..|+.|+.+.++.| .+.+-++-....+++|++++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 4444444433222233333444566677777776666 332 4557788888888888 55544444445568889999
Q ss_pred ccCceeeecCc--hhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIP--EEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~ 140 (142)
++.|++. .+- ..+..+.+|..|+++.+.
T Consensus 98 ls~Nki~-~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 98 LSGNKIK-DLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred ecCCccc-cccccchhhhhcchhhhhcccCC
Confidence 9988876 221 123445567777777664
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00074 Score=48.13 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=37.8
Q ss_pred cccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCc-hhhhCCCCCCE
Q 035490 57 SFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP-EEIGCLFKLQK 133 (142)
Q Consensus 57 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~~~~L~~ 133 (142)
..++.+|+.+|.+++ .+-..+..|+.|++++++.|.+...+...-....+|+.+.+.+..+.+.-. ..+..+++++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 445556666666552 122233455666666666665542221110123355556555554432211 12334455555
Q ss_pred EEcccc
Q 035490 134 LSIRRN 139 (142)
Q Consensus 134 L~l~~n 139 (142)
|.++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555544
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.0017 Score=27.65 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=10.8
Q ss_pred cceeeeccCcceeeCChhh
Q 035490 59 LRHINIADNSFHGEIPREI 77 (142)
Q Consensus 59 L~~L~l~~n~l~~~~~~~~ 77 (142)
|++|++++|.++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 566666666666 555444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.33 E-value=0.011 Score=44.13 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=6.0
Q ss_pred CCcEEEccCcee
Q 035490 106 NLIAFHANNNKL 117 (142)
Q Consensus 106 ~L~~l~l~~n~~ 117 (142)
+|+.|++.++..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 455555554443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.33 E-value=0.013 Score=43.88 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN 91 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n 91 (142)
.+++.|++++|. ++. +| . -...|++|.++++.--..+|..+ ..+|+.|.+..|
T Consensus 52 ~~l~~L~Is~c~-L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCD-IES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCC-Ccc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 456777777776 552 33 1 12346777776533222445433 245666666665
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00059 Score=48.63 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCCcceee--cCccccCccccceeeeccCcceeeCChhh-cCCCCCcEEEccCcccccCC-CccccCCCCC
Q 035490 32 QKVAKLDLRKYQSLRGF--LSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLM-PTNLSRCSNL 107 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L 107 (142)
.+++++++.+|. +.+. +..-+.+|++|+.|+++.|.+...+. .+ ....+|+.+-+.+..+.... ...+..++.+
T Consensus 71 ~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 668899999998 7743 33446789999999999999884432 23 35667888888877765432 2345567777
Q ss_pred cEEEccCce
Q 035490 108 IAFHANNNK 116 (142)
Q Consensus 108 ~~l~l~~n~ 116 (142)
+.+.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777777773
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0005 Score=48.53 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~ 109 (142)
.+++.|++-++. +.++- -...|+.|+.|.++-|+++ .+. .+..++.|+.+++..|.|.. +. ..++++++|+.
T Consensus 19 ~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCC-ccHHH--HHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 345666666666 55321 1344666777777777776 322 34556666777777776652 22 23556677777
Q ss_pred EEccCceeeecCch-----hhhCCCCCCEEE
Q 035490 110 FHANNNKLAGEIPE-----EIGCLFKLQKLS 135 (142)
Q Consensus 110 l~l~~n~~~~~~p~-----~~~~~~~L~~L~ 135 (142)
|-|..|...+.-+. .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 76666665544332 234455666554
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.56 E-value=0.029 Score=39.84 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCcceeecCcc----ccCccccceeeeccCcce
Q 035490 32 QKVAKLDLRKYQSLRGFLSPY----VGNLSFLRHINIADNSFH 70 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~l~ 70 (142)
++++.+++++|. |....|+. +..-..|.+|.+++|.+.
T Consensus 92 p~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred Ccceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 455555555555 44333322 233344555555555543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.16 E-value=0.18 Score=30.85 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.+.+.. . +.......+.....|+.+.+..+ +...-...+....+++.+.+.. .+...-...+..+..++.+.
T Consensus 12 ~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 4677777774 3 45444556677777888888764 5533344566666788888865 33322234566678888888
Q ss_pred ccCceeeecCc-hhhhCCCCCCEEEccc
Q 035490 112 ANNNKLAGEIP-EEIGCLFKLQKLSIRR 138 (142)
Q Consensus 112 l~~n~~~~~~p-~~~~~~~~L~~L~l~~ 138 (142)
+..+ +. .++ ..+... .++.+.+..
T Consensus 88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 7654 43 222 335554 666666543
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.91 E-value=0.016 Score=22.93 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=5.4
Q ss_pred ccceeeeccCcce
Q 035490 58 FLRHINIADNSFH 70 (142)
Q Consensus 58 ~L~~L~l~~n~l~ 70 (142)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3555555555544
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.0013 Score=46.95 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=31.2
Q ss_pred ecCCCCcEEEEEcCCCCcceee-cCccccCccccceeeeccCccee
Q 035490 27 CAHRHQKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHG 71 (142)
Q Consensus 27 ~~~~~~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~ 71 (142)
|.+++.++++|+++.+.+++.. +.--+.++..|..|++++|.+..
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence 5566688999999888766632 22235667778888888887653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.0011 Score=46.89 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC--hhhcCCCCCcEEEccCcccccCCCc-----ccc
Q 035490 30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP--REIGNLFSLETLMITDNSFSGLMPT-----NLS 102 (142)
Q Consensus 30 ~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~~~~~~p~-----~~~ 102 (142)
+++.++.|.++-|. ++..-| +..++.|++|++..|.+. .+. ..+..+++|+.|.+..|...+..+. .+.
T Consensus 39 kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred hcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 33777777777777 664322 455677778888888776 333 3456777888888877777655443 233
Q ss_pred CCCCCcEEE
Q 035490 103 RCSNLIAFH 111 (142)
Q Consensus 103 ~l~~L~~l~ 111 (142)
.+++|+.|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 456666554
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.00093 Score=47.68 Aligned_cols=85 Identities=21% Similarity=0.222 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCcceee-cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccC-CCccccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGL-MPTNLSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~-~p~~~~~l~~L~ 108 (142)
.+++.|+++... ++.. +..-+....+|+.|.+.++.+.+.+-..+..-..|+.++++.+. ++.. +.-.+..+..|.
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 346666666655 4421 12223445556666666666665555555555566666655433 2211 111234455555
Q ss_pred EEEccCcee
Q 035490 109 AFHANNNKL 117 (142)
Q Consensus 109 ~l~l~~n~~ 117 (142)
.|+++.+.+
T Consensus 264 ~LNlsWc~l 272 (419)
T KOG2120|consen 264 ELNLSWCFL 272 (419)
T ss_pred hcCchHhhc
Confidence 555554433
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.35 E-value=0.001 Score=45.91 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred ecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCC
Q 035490 27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN 106 (142)
Q Consensus 27 ~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~ 106 (142)
-+...++.+.|++++|+ +. .+...+..+..+..++++.|.+. -.|.+++.+..+..+++..|..+ ..|..++..+.
T Consensus 37 ei~~~kr~tvld~~s~r-~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhH-HH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 33344788999999988 44 35566677788888999988887 78888888888888888888887 67888888999
Q ss_pred CcEEEccCceee
Q 035490 107 LIAFHANNNKLA 118 (142)
Q Consensus 107 L~~l~l~~n~~~ 118 (142)
++.++...|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999988888876
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.27 E-value=0.002 Score=44.50 Aligned_cols=87 Identities=10% Similarity=0.195 Sum_probs=62.6
Q ss_pred cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490 52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131 (142)
Q Consensus 52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L 131 (142)
.+..+...+.||++.|.+- ..-..++.++.+..++++.|.+. .+|..++....++.+++..|..+ ..|..++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455566778888888776 34445666777778888888887 66777777777777777777777 667777777777
Q ss_pred CEEEcccccC
Q 035490 132 QKLSIRRNLL 141 (142)
Q Consensus 132 ~~L~l~~n~i 141 (142)
+.+++.+|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 7777766643
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.07 E-value=0.21 Score=35.62 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=47.0
Q ss_pred ccccCccccceeeeccCcceeeCChh----hcCCCCCcEEEccCcccccCCCc-cc-------------cCCCCCcEEEc
Q 035490 51 PYVGNLSFLRHINIADNSFHGEIPRE----IGNLFSLETLMITDNSFSGLMPT-NL-------------SRCSNLIAFHA 112 (142)
Q Consensus 51 ~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~n~~~~~~p~-~~-------------~~l~~L~~l~l 112 (142)
+.+..+++|+.++++.|.|....|+. ++....|.++.+.+|.+. .+.+ -+ ...+.|+.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34566788999999999988666644 445678999999999876 2221 11 12467888888
Q ss_pred cCceee
Q 035490 113 NNNKLA 118 (142)
Q Consensus 113 ~~n~~~ 118 (142)
..|++.
T Consensus 165 grNRle 170 (388)
T COG5238 165 GRNRLE 170 (388)
T ss_pred ccchhc
Confidence 888775
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.01 E-value=0.086 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=7.5
Q ss_pred cccceeeeccCcce
Q 035490 57 SFLRHINIADNSFH 70 (142)
Q Consensus 57 ~~L~~L~l~~n~l~ 70 (142)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.01 E-value=0.086 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=7.5
Q ss_pred cccceeeeccCcce
Q 035490 57 SFLRHINIADNSFH 70 (142)
Q Consensus 57 ~~L~~L~l~~n~l~ 70 (142)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.59 E-value=1.3 Score=26.91 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=47.7
Q ss_pred cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490 52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131 (142)
Q Consensus 52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L 131 (142)
.|....+|+.+.+.. .+...-...+.....++.+.+..+ +...-...+..+..++.+.+.. .+...-...+..+.++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566788888874 455344456777778999998875 5533345677887899999865 3331223356667888
Q ss_pred CEEEcccc
Q 035490 132 QKLSIRRN 139 (142)
Q Consensus 132 ~~L~l~~n 139 (142)
+.+++..+
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 88887654
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.94 E-value=0.059 Score=23.08 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=7.1
Q ss_pred cccceeeeccCccee
Q 035490 57 SFLRHINIADNSFHG 71 (142)
Q Consensus 57 ~~L~~L~l~~n~l~~ 71 (142)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345566666665553
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.74 E-value=0.32 Score=21.52 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=8.6
Q ss_pred CCCCEEEcccccC
Q 035490 129 FKLQKLSIRRNLL 141 (142)
Q Consensus 129 ~~L~~L~l~~n~i 141 (142)
.+|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566777777766
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=0.1 Score=35.30 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee-CChhhc-CCCCCcEEEccCcc-cccCCCccccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE-IPREIG-NLFSLETLMITDNS-FSGLMPTNLSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~l~l~~n~-~~~~~p~~~~~l~~L~ 108 (142)
-.++.++-+++. +..+--..+..++.++.|.+.++.--+. .-+.++ ..++|+.|+++.|. |+...-..+..+++|+
T Consensus 101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 558888888888 8877777888888888888888774322 111222 35689999998654 5533334455667777
Q ss_pred EEEccCc
Q 035490 109 AFHANNN 115 (142)
Q Consensus 109 ~l~l~~n 115 (142)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 7776553
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.25 E-value=0.77 Score=20.44 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=7.8
Q ss_pred CCCEEEcccccC
Q 035490 130 KLQKLSIRRNLL 141 (142)
Q Consensus 130 ~L~~L~l~~n~i 141 (142)
+|+.|++++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 566666666665
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.58 E-value=0.7 Score=20.44 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=12.2
Q ss_pred CCcEEEccCceeeecCch
Q 035490 106 NLIAFHANNNKLAGEIPE 123 (142)
Q Consensus 106 ~L~~l~l~~n~~~~~~p~ 123 (142)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777777 6664
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=0.18 Score=34.21 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=49.5
Q ss_pred ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC-CCcccc-CCCCCcEEEccCc-eeeecCchhhhCCCCCCEE
Q 035490 58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLS-RCSNLIAFHANNN-KLAGEIPEEIGCLFKLQKL 134 (142)
Q Consensus 58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~-~l~~L~~l~l~~n-~~~~~~p~~~~~~~~L~~L 134 (142)
.++.+|.++..+...--+.+..++.++.+.+.++.-.+- .-+.+. -.++|+.|+++.+ +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 367888888887755555666777777777766653211 111111 2478999999965 6773222345666777766
Q ss_pred Eccc
Q 035490 135 SIRR 138 (142)
Q Consensus 135 ~l~~ 138 (142)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.80 E-value=1 Score=33.80 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=25.2
Q ss_pred CCCCcEEEccCcc-cccCCCcccc-CCCCCcEEEccCce-eeec-CchhhhCCCCCCEEEcccc
Q 035490 80 LFSLETLMITDNS-FSGLMPTNLS-RCSNLIAFHANNNK-LAGE-IPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 80 l~~L~~l~l~~n~-~~~~~p~~~~-~l~~L~~l~l~~n~-~~~~-~p~~~~~~~~L~~L~l~~n 139 (142)
...|+.++++.+. ++...-..+. .++.|+.+.+.... ++.. +-.....++.|+.|+++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3455556555555 3322111111 14556665544333 3311 1112233445666666543
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.30 E-value=6.2 Score=30.98 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=7.6
Q ss_pred CCcEEEccCceee
Q 035490 106 NLIAFHANNNKLA 118 (142)
Q Consensus 106 ~L~~l~l~~n~~~ 118 (142)
.|++|.+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3556666666654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.20 E-value=6.9 Score=30.71 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=35.0
Q ss_pred CCCCcEEEccCcccccC--CCccccCCCCCcEEEccCc--eeeecCch--hhhCCCCCCEEEcccccC
Q 035490 80 LFSLETLMITDNSFSGL--MPTNLSRCSNLIAFHANNN--KLAGEIPE--EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 80 l~~L~~l~l~~n~~~~~--~p~~~~~l~~L~~l~l~~n--~~~~~~p~--~~~~~~~L~~L~l~~n~i 141 (142)
.+.+..+.+++|++... +..--...++|+.|+|++| .+. ..++ .++. ..|+.|-+.||+|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~-l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKG-LPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcC-CCHHHeeecCCcc
Confidence 45667778888887632 1111223478888999888 333 1111 1222 3467888888875
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.82 E-value=17 Score=15.43 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=7.0
Q ss_pred cccceeeeccCc
Q 035490 57 SFLRHINIADNS 68 (142)
Q Consensus 57 ~~L~~L~l~~n~ 68 (142)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 346666666654
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.04 E-value=33 Score=32.49 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=24.4
Q ss_pred eeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490 63 NIADNSFHGEIPREIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 63 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 94 (142)
||++|+|+..-+..|..+.+|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889988333456677889999999988774
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.70 E-value=39 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=24.6
Q ss_pred EcCCCCcceeecCccccCccccceeeeccCcceee
Q 035490 38 DLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE 72 (142)
Q Consensus 38 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 72 (142)
+|++|+ +...-+..|..+..|+.|+|++|.+.-.
T Consensus 1 DLSnN~-LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNK-ISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCc-CCccChHHhccCCCceEEEeeCCccccc
Confidence 467777 7755556677788888888888887643
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.66 E-value=1.8 Score=33.36 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=41.1
Q ss_pred ccccceeeeccCcceee----CChhhcCCCC-CcEEEccCcccccC----CCccccCC-CCCcEEEccCceeeec----C
Q 035490 56 LSFLRHINIADNSFHGE----IPREIGNLFS-LETLMITDNSFSGL----MPTNLSRC-SNLIAFHANNNKLAGE----I 121 (142)
Q Consensus 56 l~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~l~l~~n~~~~~----~p~~~~~l-~~L~~l~l~~n~~~~~----~ 121 (142)
..+++.|.+++|.++.. +...+...+. +..+++..|.+... +...+..+ ..++.+++..|.|+.. +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44556666666665421 1112222333 44456666655422 11223333 4566777777766532 1
Q ss_pred chhhhCCCCCCEEEcccccC
Q 035490 122 PEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 122 p~~~~~~~~L~~L~l~~n~i 141 (142)
++.+...+.++.+.+..|.+
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 22333444566666666654
Done!