Query 035490
Match_columns 142
No_of_seqs 118 out of 2694
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-23 1.2E-27 146.4 10.4 137 3-141 18-161 (313)
2 4eco_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 141.5 10.8 130 10-142 57-287 (636)
3 3rgz_A Protein brassinosteroid 99.8 1.3E-19 4.3E-24 141.3 12.4 137 1-141 22-190 (768)
4 3e6j_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 120.6 11.0 131 10-142 9-148 (229)
5 1w8a_A SLIT protein; signaling 99.8 3.7E-18 1.3E-22 112.9 9.8 124 18-142 6-139 (192)
6 4ecn_A Leucine-rich repeat pro 99.8 4.3E-18 1.5E-22 134.1 10.2 117 23-141 315-528 (876)
7 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.7E-22 112.0 11.2 122 19-141 10-140 (220)
8 2o6s_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 109.9 10.7 123 18-141 5-136 (208)
9 2o6r_A Variable lymphocyte rec 99.7 2.4E-17 8.2E-22 107.5 10.3 123 18-142 5-137 (177)
10 4fcg_A Uncharacterized protein 99.7 2.2E-18 7.4E-23 122.6 4.3 114 5-122 42-167 (328)
11 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-16 4.4E-21 107.6 10.8 109 32-141 57-165 (220)
12 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.9E-21 105.9 10.3 107 32-141 31-138 (193)
13 2v70_A SLIT-2, SLIT homolog 2 99.7 8.4E-17 2.9E-21 108.5 9.4 124 18-142 9-142 (220)
14 1ogq_A PGIP-2, polygalacturona 99.7 1.6E-16 5.5E-21 112.2 8.7 109 32-141 76-186 (313)
15 2v9t_B SLIT homolog 2 protein 99.7 3.2E-16 1.1E-20 105.6 9.7 110 31-141 55-164 (220)
16 4g8a_A TOLL-like receptor 4; l 99.7 1.9E-16 6.4E-21 120.1 8.9 109 32-141 52-160 (635)
17 3m19_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 104.5 10.6 109 32-141 59-167 (251)
18 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4E-20 105.8 10.2 108 32-140 85-192 (272)
19 3m19_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 104.4 10.0 109 32-141 83-191 (251)
20 3e6j_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 102.9 9.8 110 31-142 63-172 (229)
21 2o6q_A Variable lymphocyte rec 99.6 2.3E-15 7.7E-20 104.2 10.9 109 32-141 37-145 (270)
22 2xot_A Amphoterin-induced prot 99.6 1.7E-15 5.8E-20 108.9 10.5 109 32-141 39-148 (361)
23 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.8E-20 101.3 8.2 111 27-142 83-194 (197)
24 3v47_A TOLL-like receptor 5B a 99.6 1.5E-15 5.1E-20 111.6 9.7 109 32-141 30-141 (455)
25 2je0_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 98.0 6.5 107 32-141 17-125 (149)
26 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 98.7 7.6 105 32-141 49-159 (168)
27 1ozn_A Reticulon 4 receptor; N 99.6 2.7E-15 9.1E-20 104.4 10.0 109 32-141 56-165 (285)
28 3rfs_A Internalin B, repeat mo 99.6 3.2E-15 1.1E-19 103.6 10.2 123 19-142 94-218 (272)
29 2o6s_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 99.3 9.8 110 31-141 51-160 (208)
30 3g39_A Variable lymphocyte rec 99.6 4.5E-15 1.6E-19 96.3 9.4 103 35-141 12-114 (170)
31 2z80_A TOLL-like receptor 2, v 99.6 2.9E-15 1E-19 107.1 8.8 124 13-139 23-159 (353)
32 3rgz_A Protein brassinosteroid 99.6 3.3E-15 1.1E-19 116.5 9.8 109 32-141 442-550 (768)
33 3v47_A TOLL-like receptor 5B a 99.6 4.8E-15 1.6E-19 108.9 9.9 110 32-142 299-408 (455)
34 2z62_A TOLL-like receptor 4, v 99.6 1.2E-14 4E-19 100.7 11.3 110 32-142 52-162 (276)
35 2xot_A Amphoterin-induced prot 99.6 6.1E-15 2.1E-19 106.0 10.1 110 31-142 63-176 (361)
36 4fcg_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 106.0 8.6 106 32-140 183-288 (328)
37 3vq2_A TLR4, TOLL-like recepto 99.6 4.7E-15 1.6E-19 112.5 9.5 109 32-141 56-165 (606)
38 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.4E-19 101.6 11.0 107 32-141 77-184 (290)
39 3zyi_A Leucine-rich repeat-con 99.6 9.4E-15 3.2E-19 107.7 10.5 106 32-138 75-180 (452)
40 2z81_A CD282 antigen, TOLL-lik 99.6 4E-15 1.4E-19 111.6 8.5 108 32-140 26-134 (549)
41 2r9u_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 94.7 9.6 102 35-141 15-117 (174)
42 1ozn_A Reticulon 4 receptor; N 99.6 9.1E-15 3.1E-19 101.7 9.6 60 80-139 176-235 (285)
43 3t6q_A CD180 antigen; protein- 99.6 1E-14 3.4E-19 110.7 10.2 109 32-141 33-141 (606)
44 2id5_A Lingo-1, leucine rich r 99.6 1.2E-14 4.1E-19 107.6 10.1 109 32-141 32-140 (477)
45 4g8a_A TOLL-like receptor 4; l 99.6 1.7E-14 5.9E-19 109.3 11.0 110 32-142 76-186 (635)
46 4b8c_D Glucose-repressible alc 99.6 5.6E-15 1.9E-19 114.8 8.2 106 32-142 224-329 (727)
47 2z62_A TOLL-like receptor 4, v 99.6 9.9E-15 3.4E-19 101.1 8.5 110 32-142 28-137 (276)
48 2ft3_A Biglycan; proteoglycan, 99.6 3E-14 1E-18 101.1 11.1 120 18-141 31-159 (332)
49 3vq2_A TLR4, TOLL-like recepto 99.6 1.8E-14 6.1E-19 109.3 10.4 110 32-142 32-141 (606)
50 2z66_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 101.6 9.2 109 32-141 150-260 (306)
51 2o6q_A Variable lymphocyte rec 99.6 2.5E-14 8.4E-19 98.9 10.0 62 79-140 155-216 (270)
52 2z66_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 101.9 8.6 111 31-142 125-236 (306)
53 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 94.0 7.6 107 32-142 24-133 (168)
54 1p9a_G Platelet glycoprotein I 99.5 3.4E-14 1.2E-18 99.4 10.1 109 31-141 99-207 (290)
55 4ezg_A Putative uncharacterize 99.5 1.5E-14 5.3E-19 95.7 7.3 106 32-142 66-172 (197)
56 3j0a_A TOLL-like receptor 5; m 99.5 1.5E-14 5.2E-19 113.8 8.5 109 32-141 48-160 (844)
57 1w8a_A SLIT protein; signaling 99.5 4E-14 1.4E-18 93.5 9.0 104 35-142 11-115 (192)
58 1dce_A Protein (RAB geranylger 99.5 2.5E-14 8.4E-19 108.5 9.0 104 33-142 442-546 (567)
59 2wfh_A SLIT homolog 2 protein 99.5 6.2E-14 2.1E-18 92.7 9.7 103 35-142 13-115 (193)
60 1xku_A Decorin; proteoglycan, 99.5 6.4E-14 2.2E-18 99.3 10.4 120 18-141 29-157 (330)
61 2xwt_C Thyrotropin receptor; s 99.5 6.7E-14 2.3E-18 95.1 9.9 105 32-139 31-140 (239)
62 3o6n_A APL1; leucine-rich repe 99.5 5.7E-14 1.9E-18 101.6 10.1 108 32-141 69-177 (390)
63 3oja_A Leucine-rich immune mol 99.5 5.2E-14 1.8E-18 104.9 10.0 118 19-141 108-226 (487)
64 3oja_B Anopheles plasmodium-re 99.5 5.2E-14 1.8E-18 107.1 10.1 109 32-141 75-183 (597)
65 3zyj_A Leucine-rich repeat-con 99.5 8.2E-14 2.8E-18 102.4 10.7 106 32-138 64-169 (440)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 5.4E-14 1.9E-18 106.1 9.4 107 32-142 52-159 (562)
67 3o6n_A APL1; leucine-rich repe 99.5 3E-14 1E-18 103.0 7.4 109 32-142 45-154 (390)
68 2z63_A TOLL-like receptor 4, v 99.5 4.7E-14 1.6E-18 106.1 8.7 109 32-141 421-530 (570)
69 1wwl_A Monocyte differentiatio 99.5 1.6E-14 5.6E-19 101.8 5.8 108 32-141 95-213 (312)
70 2z7x_B TOLL-like receptor 1, v 99.5 2.6E-14 9.1E-19 106.7 7.1 106 32-141 21-127 (520)
71 2z63_A TOLL-like receptor 4, v 99.5 1.3E-13 4.5E-18 103.7 10.8 109 32-141 52-161 (570)
72 2id5_A Lingo-1, leucine rich r 99.5 6.2E-14 2.1E-18 103.7 8.9 109 32-141 56-164 (477)
73 1a9n_A U2A', U2A'; complex (nu 99.5 5.9E-14 2E-18 91.3 7.6 103 33-140 43-151 (176)
74 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 92.6 6.3 104 32-141 19-125 (176)
75 1ziw_A TOLL-like receptor 3; i 99.5 8.4E-14 2.9E-18 107.0 9.7 108 32-140 25-132 (680)
76 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 89.8 8.5 101 19-120 8-117 (170)
77 3oja_B Anopheles plasmodium-re 99.5 8.5E-14 2.9E-18 105.9 8.4 109 32-142 51-160 (597)
78 4eco_A Uncharacterized protein 99.5 1.4E-14 4.9E-19 110.9 4.1 121 19-141 192-342 (636)
79 3o53_A Protein LRIM1, AGAP0063 99.5 2.6E-13 9E-18 95.8 10.1 108 32-141 120-249 (317)
80 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 89.8 5.1 104 31-137 41-148 (149)
81 3t6q_A CD180 antigen; protein- 99.5 1.9E-13 6.5E-18 103.7 9.3 110 31-141 56-165 (606)
82 1xku_A Decorin; proteoglycan, 99.5 3.3E-13 1.1E-17 95.6 9.6 108 32-141 192-305 (330)
83 2z80_A TOLL-like receptor 2, v 99.5 2.4E-13 8.2E-18 97.2 8.4 108 31-141 75-186 (353)
84 3zyi_A Leucine-rich repeat-con 99.5 2.5E-13 8.6E-18 100.1 8.7 107 32-141 196-302 (452)
85 2z7x_B TOLL-like receptor 1, v 99.5 1.8E-13 6.3E-18 102.1 7.9 109 31-141 323-456 (520)
86 1ziw_A TOLL-like receptor 3; i 99.4 2E-13 6.9E-18 104.8 8.3 109 32-141 49-157 (680)
87 3zyj_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 99.2 8.9 107 32-141 185-291 (440)
88 2z81_A CD282 antigen, TOLL-lik 99.4 2.9E-13 1E-17 101.5 8.6 123 19-142 35-161 (549)
89 2o6r_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 86.0 9.4 105 34-142 9-113 (177)
90 4ecn_A Leucine-rich repeat pro 99.4 5.2E-14 1.8E-18 111.1 4.4 121 20-142 435-586 (876)
91 2ifg_A High affinity nerve gro 99.4 6.1E-13 2.1E-17 94.8 9.2 90 49-141 24-115 (347)
92 3o53_A Protein LRIM1, AGAP0063 99.4 4.5E-13 1.5E-17 94.6 8.1 102 32-138 169-271 (317)
93 4fmz_A Internalin; leucine ric 99.4 4E-13 1.4E-17 95.6 7.0 103 32-141 243-345 (347)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.1E-13 2.1E-17 100.4 8.3 111 30-142 351-486 (562)
95 1h6t_A Internalin B; cell adhe 99.4 7.6E-13 2.6E-17 92.6 8.2 102 31-141 89-190 (291)
96 3j0a_A TOLL-like receptor 5; m 99.4 1.2E-12 4.1E-17 103.1 10.1 110 32-142 266-375 (844)
97 1h6t_A Internalin B; cell adhe 99.4 1.8E-12 6.2E-17 90.6 10.0 100 32-140 112-211 (291)
98 2xwt_C Thyrotropin receptor; s 99.4 1E-12 3.5E-17 89.2 8.3 108 32-141 55-168 (239)
99 3oja_A Leucine-rich immune mol 99.4 8.5E-13 2.9E-17 98.3 8.3 106 32-142 144-250 (487)
100 1xeu_A Internalin C; cellular 99.4 1.4E-12 4.8E-17 90.0 8.7 100 32-141 63-162 (263)
101 1h6u_A Internalin H; cell adhe 99.4 2E-12 6.8E-17 91.1 9.5 80 32-118 85-164 (308)
102 1wwl_A Monocyte differentiatio 99.4 1.8E-13 6.1E-18 96.5 3.9 108 33-141 150-265 (312)
103 2ft3_A Biglycan; proteoglycan, 99.4 8.4E-13 2.9E-17 93.6 7.4 108 32-141 193-306 (332)
104 1h6u_A Internalin H; cell adhe 99.4 2.4E-12 8.3E-17 90.6 9.7 101 32-141 107-207 (308)
105 1dce_A Protein (RAB geranylger 99.4 9.9E-13 3.4E-17 99.7 7.8 113 20-136 451-567 (567)
106 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 83.9 8.4 87 32-119 33-119 (174)
107 4glp_A Monocyte differentiatio 99.4 5.9E-13 2E-17 93.7 6.0 109 32-141 91-209 (310)
108 4fmz_A Internalin; leucine ric 99.4 2.6E-12 9E-17 91.3 9.0 105 31-142 220-324 (347)
109 4glp_A Monocyte differentiatio 99.3 2.2E-13 7.7E-18 95.8 2.3 61 78-141 221-284 (310)
110 1m9s_A Internalin B; cell inva 99.3 4.2E-12 1.4E-16 96.9 9.4 82 53-140 105-186 (605)
111 1m9s_A Internalin B; cell inva 99.3 3.2E-12 1.1E-16 97.6 8.6 114 19-141 96-209 (605)
112 4b8c_D Glucose-repressible alc 99.3 1.8E-12 6.1E-17 100.8 6.2 91 49-142 216-306 (727)
113 1xeu_A Internalin C; cellular 99.3 1.2E-11 4.1E-16 85.3 9.6 101 32-142 41-141 (263)
114 2ifg_A High affinity nerve gro 99.3 1.2E-11 4.3E-16 88.0 8.9 99 19-119 7-117 (347)
115 1ds9_A Outer arm dynein; leuci 99.3 6.8E-14 2.3E-18 92.6 -3.4 103 32-141 48-152 (198)
116 1o6v_A Internalin A; bacterial 99.3 1.2E-11 4.1E-16 91.4 8.1 101 32-141 287-387 (466)
117 3cvr_A Invasion plasmid antige 99.3 3.3E-12 1.1E-16 96.9 5.2 114 10-141 33-152 (571)
118 1ds9_A Outer arm dynein; leuci 99.3 6.5E-14 2.2E-18 92.7 -4.0 105 32-142 18-128 (198)
119 1o6v_A Internalin A; bacterial 99.3 2.4E-11 8.2E-16 89.8 8.8 101 32-141 265-365 (466)
120 3cvr_A Invasion plasmid antige 99.2 3E-11 1E-15 91.7 8.7 97 32-142 140-243 (571)
121 2ca6_A RAN GTPase-activating p 99.2 2.5E-12 8.4E-17 92.9 2.4 110 32-142 187-316 (386)
122 3bz5_A Internalin-J, INLJ; leu 99.2 5.4E-11 1.8E-15 88.0 9.1 97 32-140 42-138 (457)
123 2ast_B S-phase kinase-associat 99.2 5E-12 1.7E-16 89.5 3.4 107 32-139 93-205 (336)
124 4ay9_X Follicle-stimulating ho 99.2 3.3E-11 1.1E-15 86.1 7.3 100 18-118 7-117 (350)
125 2ast_B S-phase kinase-associat 99.2 2.1E-12 7E-17 91.5 0.7 106 32-139 70-178 (336)
126 3goz_A Leucine-rich repeat-con 99.2 8.2E-12 2.8E-16 89.6 2.4 108 33-141 52-179 (362)
127 3g06_A SSPH2 (leucine-rich rep 99.2 2.2E-10 7.4E-15 87.8 10.0 77 57-142 221-297 (622)
128 3bz5_A Internalin-J, INLJ; leu 99.1 2.7E-10 9.1E-15 84.3 9.7 80 53-141 166-245 (457)
129 2ca6_A RAN GTPase-activating p 99.1 1.1E-11 3.8E-16 89.5 1.7 108 33-141 160-286 (386)
130 3g06_A SSPH2 (leucine-rich rep 99.1 2.4E-11 8.2E-16 93.0 2.8 97 8-118 10-114 (622)
131 3goz_A Leucine-rich repeat-con 99.1 4E-11 1.4E-15 86.0 3.1 110 32-142 22-151 (362)
132 1jl5_A Outer protein YOPM; leu 99.1 7.6E-10 2.6E-14 81.8 9.0 56 32-94 131-186 (454)
133 1z7x_W Ribonuclease inhibitor; 99.0 2E-11 6.9E-16 89.7 -0.4 85 58-142 314-411 (461)
134 4ay9_X Follicle-stimulating ho 99.0 6.4E-10 2.2E-14 79.5 7.1 104 35-142 12-117 (350)
135 1jl5_A Outer protein YOPM; leu 99.0 1.2E-09 3.9E-14 80.9 8.2 76 57-140 131-206 (454)
136 1z7x_W Ribonuclease inhibitor; 98.9 7.1E-11 2.4E-15 86.7 -0.3 109 32-141 256-382 (461)
137 3un9_A NLR family member X1; l 98.9 2.7E-10 9.2E-15 82.3 2.3 109 33-142 127-252 (372)
138 3un9_A NLR family member X1; l 98.8 9.7E-10 3.3E-14 79.4 1.2 110 32-142 101-224 (372)
139 1io0_A Tropomodulin; LRR prote 98.7 3.2E-09 1.1E-13 69.5 1.1 110 31-141 35-163 (185)
140 3sb4_A Hypothetical leucine ri 98.7 1.2E-07 4.1E-12 67.1 8.4 102 32-136 226-328 (329)
141 3rw6_A Nuclear RNA export fact 98.6 3.9E-08 1.3E-12 68.0 4.5 78 56-135 169-257 (267)
142 3ogk_B Coronatine-insensitive 98.5 1.2E-08 4.1E-13 77.1 0.8 90 53-142 432-526 (592)
143 3rw6_A Nuclear RNA export fact 98.5 7.9E-09 2.7E-13 71.4 -0.8 63 78-142 167-233 (267)
144 3ogk_B Coronatine-insensitive 98.4 3.1E-07 1E-11 69.4 4.9 62 32-94 164-233 (592)
145 2p1m_B Transport inhibitor res 98.3 2.4E-07 8.3E-12 69.9 2.9 107 32-139 105-221 (594)
146 2p1m_B Transport inhibitor res 98.2 1E-07 3.4E-12 72.0 -1.3 88 53-141 428-518 (594)
147 3e4g_A ATP synthase subunit S, 98.2 5.1E-07 1.7E-11 58.6 1.9 86 32-118 61-153 (176)
148 2ra8_A Uncharacterized protein 98.2 3.3E-07 1.1E-11 66.0 1.0 62 80-141 251-319 (362)
149 3sb4_A Hypothetical leucine ri 98.2 4.4E-06 1.5E-10 59.0 6.7 84 56-141 225-309 (329)
150 1io0_A Tropomodulin; LRR prote 98.2 7.2E-07 2.5E-11 58.2 2.3 94 49-142 28-136 (185)
151 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 57.0 2.4 83 57-139 61-149 (176)
152 2ra8_A Uncharacterized protein 97.9 1.5E-05 5E-10 57.4 5.6 107 32-142 172-292 (362)
153 4fdw_A Leucine rich hypothetic 97.7 0.00019 6.3E-09 52.3 8.3 88 50-140 264-356 (401)
154 4fdw_A Leucine rich hypothetic 97.4 0.00058 2E-08 49.7 7.4 105 32-140 271-381 (401)
155 1pgv_A TMD-1, tropomodulin TMD 97.3 6.5E-05 2.2E-09 49.5 1.2 109 31-140 40-168 (197)
156 3rfe_A Platelet glycoprotein I 97.2 0.00071 2.4E-08 41.5 5.3 58 60-119 11-69 (130)
157 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00061 2.1E-08 44.9 3.0 87 53-139 37-136 (197)
158 4gt6_A Cell surface protein; l 96.7 0.019 6.4E-07 41.3 9.6 101 33-139 266-367 (394)
159 3rfe_A Platelet glycoprotein I 96.6 0.0011 3.9E-08 40.6 2.6 56 36-94 12-68 (130)
160 4h09_A Hypothetical leucine ri 96.5 0.017 5.7E-07 41.2 8.2 81 53-136 259-340 (379)
161 4gt6_A Cell surface protein; l 96.2 0.017 5.8E-07 41.6 7.1 103 32-141 288-390 (394)
162 4fs7_A Uncharacterized protein 96.1 0.016 5.3E-07 41.7 6.6 84 52-138 292-375 (394)
163 4fs7_A Uncharacterized protein 95.7 0.064 2.2E-06 38.5 8.1 61 51-113 314-374 (394)
164 4h09_A Hypothetical leucine ri 95.4 0.15 5E-06 36.3 9.1 88 50-139 233-320 (379)
165 3ox7_P MH027; urokinase-type p 41.5 5.9 0.0002 15.6 0.1 9 18-26 6-14 (23)
166 2lz0_A Uncharacterized protein 36.0 50 0.0017 18.6 3.5 39 51-90 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=3.6e-23 Score=146.36 Aligned_cols=137 Identities=28% Similarity=0.471 Sum_probs=119.6
Q ss_pred ccCCCCCcccCcCCCCCce--eeeeEecCCC--CcEEEEEcCCCCccee--ecCccccCccccceeeecc-CcceeeCCh
Q 035490 3 FHDPIGFTTSLNNSINLGQ--WTGVTCAHRH--QKVAKLDLRKYQSLRG--FLSPYVGNLSFLRHINIAD-NSFHGEIPR 75 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~--~~l~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~ 75 (142)
+.||. .+.+|..++++|. |.|++|.... .+++.|++++|. +.+ .+|..+..+++|++|++++ |.+.+.+|.
T Consensus 18 ~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~ 95 (313)
T 1ogq_A 18 LGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95 (313)
T ss_dssp TTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG
T ss_pred cCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCCh
Confidence 34565 6888988888998 9999998654 789999999999 988 8889999999999999994 889888898
Q ss_pred hhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 76 EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 76 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.+..+++|+.++++.|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.|
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 899999999999999999878888888899999999999999877888888888999999988876
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.2e-20 Score=141.46 Aligned_cols=130 Identities=17% Similarity=0.297 Sum_probs=117.2
Q ss_pred cccCcCCCCCcee---eeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccC-------------------
Q 035490 10 TTSLNNSINLGQW---TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADN------------------- 67 (142)
Q Consensus 10 ~~~~~~~~~~~~~---~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n------------------- 67 (142)
..+|+.+++.|.| .|++|... .+++.|+++++. +.|.+|+.+..+++|+.|++++|
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~ 134 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC
T ss_pred CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCch
Confidence 4579988999999 99999765 799999999999 99999999999999999999888
Q ss_pred -----------------------------------------------------------cceeeCChhhcCCCCCcEEEc
Q 035490 68 -----------------------------------------------------------SFHGEIPREIGNLFSLETLMI 88 (142)
Q Consensus 68 -----------------------------------------------------------~l~~~~~~~~~~l~~L~~l~l 88 (142)
.+++ +|..++.+++|+.+++
T Consensus 135 ~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~L 213 (636)
T 4eco_A 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM 213 (636)
T ss_dssp HHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEE
T ss_pred HHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEEC
Confidence 3444 7888999999999999
Q ss_pred cCcccccC-----------------CCcccc--CCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc-CC
Q 035490 89 TDNSFSGL-----------------MPTNLS--RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL-LT 142 (142)
Q Consensus 89 ~~n~~~~~-----------------~p~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-is 142 (142)
+.|.+++. +|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|. ++
T Consensus 214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 99999974 899888 99999999999999988899999999999999999997 53
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.3e-19 Score=141.31 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=109.7
Q ss_pred CCccCCCCCcccCcCCCCCceeeeeEecCCCCcEEEEEcCCCCcceee---cC-----------------------cccc
Q 035490 1 SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGF---LS-----------------------PYVG 54 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~---~~-----------------------~~l~ 54 (142)
+++.||. .+.+|+.++++|.|.|++|. ..+++.|+++++. +.+. ++ ..+.
T Consensus 22 ~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~-l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~ 97 (768)
T 3rgz_A 22 DVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKP-LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK 97 (768)
T ss_dssp TTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSC-CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCC
T ss_pred hhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCC-cCCccCccChhHhccCcccccCCcCCCcCCCchhhc
Confidence 3567888 89999988899999999998 3899999999988 7775 33 4667
Q ss_pred CccccceeeeccCcceeeCCh--hhcCCCCCcEEEccCcccccCCCccc-cCCCCCcEEEccCceeeecCchh---hhCC
Q 035490 55 NLSFLRHINIADNSFHGEIPR--EIGNLFSLETLMITDNSFSGLMPTNL-SRCSNLIAFHANNNKLAGEIPEE---IGCL 128 (142)
Q Consensus 55 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~~~~~~p~~---~~~~ 128 (142)
.+++|++|++++|.+.+.+|. .++.+++|++++++.|.+.+..|..+ ..+++|++|++++|.+++..+.. +..+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 788899999999999988887 88889999999999998887766654 67788888888888888666554 5566
Q ss_pred CCCCEEEcccccC
Q 035490 129 FKLQKLSIRRNLL 141 (142)
Q Consensus 129 ~~L~~L~l~~n~i 141 (142)
++|+.|++++|.+
T Consensus 178 ~~L~~L~Ls~n~l 190 (768)
T 3rgz_A 178 GELKHLAISGNKI 190 (768)
T ss_dssp TTCCEEECCSSEE
T ss_pred CCCCEEECCCCcc
Confidence 6666666666643
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4e-19 Score=120.59 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=105.4
Q ss_pred cccCcCCCCCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCC
Q 035490 10 TTSLNNSINLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL 80 (142)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 80 (142)
...|...+..|.|+++.|.... ++++.|++++|. +.+..+..+..+++|+.|++++|.+....+..+..+
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 3446667899999999997633 679999999999 998778888889999999999999974444556788
Q ss_pred CCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 81 FSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 81 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
++|+.+++++|.++...+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.|+
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 89999999999988555555778888888888888888 77877778888888888888763
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=3.7e-18 Score=112.94 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=107.3
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCc-cccCccccceeeeccCcceeeCChhhcCCCCCcEEE
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSP-YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLM 87 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 87 (142)
..|.|+.+.|.... .+++.|++++|. +.+..+. .+..+++|++|++++|.+++..|..+..++.|+.++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 35667667665432 479999999999 8866554 488899999999999999977788999999999999
Q ss_pred ccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 88 ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 88 l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999777777999999999999999999777888999999999999999874
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.3e-18 Score=134.12 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=105.2
Q ss_pred eeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeee-ccCcceee-----------------------------
Q 035490 23 TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINI-ADNSFHGE----------------------------- 72 (142)
Q Consensus 23 ~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l-~~n~l~~~----------------------------- 72 (142)
.|+.|... .+++.|+++++. +.|.+|+.+..+++|+.|++ ++|.++|.
T Consensus 315 ~GV~C~~~-~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l 392 (876)
T 4ecn_A 315 PGVDLDNN-GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392 (876)
T ss_dssp TTEEECTT-SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHT
T ss_pred CceEecCC-CCEEEEECccCC-CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhh
Confidence 99999863 889999999999 99999999999999999999 77755433
Q ss_pred -----------------------------------------------CChhhcCCCCCcEEEccCccccc----------
Q 035490 73 -----------------------------------------------IPREIGNLFSLETLMITDNSFSG---------- 95 (142)
Q Consensus 73 -----------------------------------------------~~~~~~~l~~L~~l~l~~n~~~~---------- 95 (142)
+|..++.+++|+.|+++.|.+++
T Consensus 393 ~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472 (876)
T ss_dssp CCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred ccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence 78889999999999999999997
Q ss_pred -------CCCcccc--CCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc-C
Q 035490 96 -------LMPTNLS--RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL-L 141 (142)
Q Consensus 96 -------~~p~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-i 141 (142)
.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|. +
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 2888877 99999999999999988999999999999999999997 5
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.7e-17 Score=111.97 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=81.0
Q ss_pred CceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEcc
Q 035490 19 LGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT 89 (142)
Q Consensus 19 ~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 89 (142)
.|.+..+.|.... +.++.|++++|. +.+..+..+..+++|+.|++++|.+++..|..+..+++|+.++++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4556666665422 457777777777 776655567777777777777777776666677777777777777
Q ss_pred CcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 90 DNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 90 ~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 7777643333456667777777777777644455566666677777766655
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.5e-17 Score=109.92 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI 88 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 88 (142)
..|.|.++.|.... ++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 45677777775432 457888888887 77555555667777888888888777443444567777777777
Q ss_pred cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.|
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 77777744444466677777777777777633333456666777777777655
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-17 Score=107.48 Aligned_cols=123 Identities=18% Similarity=0.283 Sum_probs=102.8
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI 88 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 88 (142)
..|.|.++.|.... ++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 45778888886532 679999999999 88766667788999999999999999555555789999999999
Q ss_pred cCcccccCCCccccCCCCCcEEEccCceeeecCch-hhhCCCCCCEEEcccccCC
Q 035490 89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE-EIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~is 142 (142)
++|.+++..+..+..+++|+.+++++|.++ .+|. .+..+++|+.|++++|++.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 999999665556788999999999999999 5554 4678899999999999863
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=2.2e-18 Score=122.62 Aligned_cols=114 Identities=21% Similarity=0.318 Sum_probs=65.4
Q ss_pred CCCCCcccC----cCCCCCceeeeeEecC--------CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee
Q 035490 5 DPIGFTTSL----NNSINLGQWTGVTCAH--------RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE 72 (142)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~~~g~~~~~--------~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 72 (142)
|+...+..| ....+.|.|.|+.|.. ...+++.|++++|. +. .+|+.+..+++|++|++++|.++ .
T Consensus 42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~l~-~ 118 (328)
T 4fcg_A 42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LP-QFPDQAFRLSHLQHMTIDAAGLM-E 118 (328)
T ss_dssp CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC-CS-SCCSCGGGGTTCSEEEEESSCCC-C
T ss_pred CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCC-ch-hcChhhhhCCCCCEEECCCCCcc-c
Confidence 565667778 4466899999998842 12456666666665 55 44555555555555555555555 5
Q ss_pred CChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCc
Q 035490 73 IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP 122 (142)
Q Consensus 73 ~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p 122 (142)
+|..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+.+|
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence 5555555555555555555555 445445555555555555443333333
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=107.61 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=62.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 57 ~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 445555555555 5544444555555566666666665544444455566666666666666554455555666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..|..+..+++|+.|++++|++
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 666666644455556666666666666654
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=105.92 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=96.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. ++ .+|..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.++...+..+..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~-i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSC-CC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-Cc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 679999999999 87 5778899999999999999999966667799999999999999999977777899999999999
Q ss_pred ccCceeeecCch-hhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~i 141 (142)
+++|.++ .+|. .+..+++|+.|++++|++
T Consensus 109 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 9999999 5554 588899999999999976
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=108.52 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=105.1
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecC-ccccCccccceeeeccCcceeeCChhhcCCCCCcEEE
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLS-PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLM 87 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 87 (142)
..|.|..+.|.... ..++.|++++|. +.+..+ ..+..+++|+.|++++|.+++..+..+..+++|+.++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 34666666665422 468899999999 987755 4478899999999999999977677899999999999
Q ss_pred ccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 88 ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 88 l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 9999999766667999999999999999999666788999999999999999874
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=1.6e-16 Score=112.23 Aligned_cols=109 Identities=27% Similarity=0.457 Sum_probs=97.0
Q ss_pred CcEEEEEcCC-CCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRK-YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++ |. +.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.++++.|.+.+.+|..+..+++|+.|
T Consensus 76 ~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 7799999995 77 888889889999999999999999998889889999999999999999988888888889999999
Q ss_pred EccCceeeecCchhhhCCC-CCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLF-KLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~i 141 (142)
++++|++++.+|..++.+. +|+.|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 9999999888888888887 889999988865
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=3.2e-16 Score=105.65 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=97.8
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +.+..|..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+++..+..+..+++|+.|
T Consensus 55 l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 55 YKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 3789999999999 998889999999999999999999994444456889999999999999997778889999999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++..+..+..+++|+.|++++|++
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9999999955455688899999999999976
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.9e-16 Score=120.07 Aligned_cols=109 Identities=25% Similarity=0.219 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..++.|++++|. +++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|+++...+..|..+++|+.|+
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 578999999999 8877777888999999999999999865566788899999999999988854445678888888888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..++.+++|+.|++++|.|
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 888888733333577788888888888765
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.2e-15 Score=104.54 Aligned_cols=109 Identities=24% Similarity=0.277 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus 59 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 59 TKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 455666666665 5554444555566666666666666643344455566666666666666643333455666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..+..+++|+.|++++|.|
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 666666633233466666677777776655
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.2e-15 Score=105.76 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.|+
T Consensus 85 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 445555555554 4443333344444555555555554433333344444444444444444433223334444444444
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|++++..+..++.+++|+.|++++|.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 44444442222223344444444444443
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.3e-15 Score=104.37 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=65.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus 83 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 556666666666 6654445556666666666666666633333445666666666666666644333566666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..+..+++|+.|++++|++
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 666666633333555666666666666654
No 20
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.5e-15 Score=102.91 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++|+.|++++|. +....+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .+|..+..+++|+.|
T Consensus 63 l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 63 LINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred ccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 3789999999999 87655566788999999999999999555556788999999999999998 789889999999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
++++|++++..+..+..+++|+.|++++|++.
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999443456888999999999999863
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.3e-15 Score=104.18 Aligned_cols=109 Identities=29% Similarity=0.321 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+.++.|++++|. +.+..+..+..+++|++|++++|.++...+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 457788888887 7765555677777777777777777733333446677777777777777644334455666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..+..+++|+.|++++|.|
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 666666633334455555666666665544
No 22
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=108.88 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
..++.|++++|. +++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 346666666666 6655444444 56666666666666664444455566666666666666654433445555556666
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|+++...+..+..+++|+.|++++|.|
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 6665555533344455555555555555544
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-15 Score=101.25 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=88.7
Q ss_pred ecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccCCCccccCCC
Q 035490 27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGLMPTNLSRCS 105 (142)
Q Consensus 27 ~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~p~~~~~l~ 105 (142)
.....++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|. ++ .++ .+..++
T Consensus 83 ~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~ 159 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP 159 (197)
T ss_dssp GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS
T ss_pred hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC
Confidence 33444788899999988 887778888888899999999999887677788888999999999987 65 455 678888
Q ss_pred CCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 106 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+|+.+++++|+++ .++ .+..+++|+.|++++|+|+
T Consensus 160 ~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 160 ELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred CCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence 9999999999888 554 6778888999999998874
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=1.5e-15 Score=111.61 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=74.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeC-ChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+.+++++|.+.+..|..+..+++|+.|
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 567888888887 77766777777777777777777765444 3456677777777777777765556667777777777
Q ss_pred EccCceeeecCchh--hhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEE--IGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~--~~~~~~L~~L~l~~n~i 141 (142)
++++|.+++..+.. ++.+++|+.|++++|.|
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 141 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCcc
Confidence 77777766433333 55566666666666654
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.4e-16 Score=98.00 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +. +.+|..+..+++|+.|++++|.+++. ..+..+++|+.+++++|.+++.+|..+..+++|+.+
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456666666666 55 45555556666666666666666533 445566666666666666664455555556666666
Q ss_pred EccCceeeec-CchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGE-IPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++. .+..+..+++|+.|++++|.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 6666666521 124555666666666666654
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=98.69 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~ 109 (142)
++++.|++++|. +.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.+++++|.+++ ++ ..+..+++|+.
T Consensus 49 ~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence 667777777777 6654 556667777777777777775566666567777777777777763 23 45666777777
Q ss_pred EEccCceeeecCch----hhhCCCCCCEEEcccccC
Q 035490 110 FHANNNKLAGEIPE----EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l~~n~i 141 (142)
+++++|.++ .+|. .+..+++|+.|++++|.+
T Consensus 125 L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 125 LDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777776 4443 566677777777777654
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=2.7e-15 Score=104.38 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +.+..+..+..+++|++|++++|. +....+..+..+++|+.+++++|.+....+..+..+++|+.+
T Consensus 56 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 344444554444 444444444445555555555554 332223444445555555555555544334445555555555
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++..+..++.+++|+.|++++|.|
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 5555555522223345555566666655544
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.2e-15 Score=103.56 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=102.0
Q ss_pred CceeeeeEe--cCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC
Q 035490 19 LGQWTGVTC--AHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96 (142)
Q Consensus 19 ~~~~~g~~~--~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~ 96 (142)
+|.+.++.. ....++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 444555443 2233889999999999 9877777788999999999999999965566678899999999999999966
Q ss_pred CCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 97 MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 97 ~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
.+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 6666788999999999999999655666888999999999999763
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.8e-15 Score=99.27 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.++++.|.++...+..+..+++|+.+
T Consensus 51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 51 LTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 3889999999999 886656667889999999999999995555557899999999999999986655568889999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++..+..+..+++|+.|++++|.+
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 9999999944444578899999999999976
No 30
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=4.5e-15 Score=96.32 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490 35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114 (142)
Q Consensus 35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 114 (142)
+.+++++|. ++. +|..+ .+.++.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.|++++
T Consensus 12 ~~l~~s~n~-l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKS-LAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSC-CSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356666666 553 44433 25667777777777755566666677777777777777644444456667777777777
Q ss_pred ceeeecCchhhhCCCCCCEEEcccccC
Q 035490 115 NKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 115 n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
|++++..+..+..+++|+.|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 777633233466667777777777755
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=107.11 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=95.7
Q ss_pred CcCCCCCceeeeeEecCC-----------CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCC
Q 035490 13 LNNSINLGQWTGVTCAHR-----------HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLF 81 (142)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~-----------~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 81 (142)
|..+...|.|.++ |.-. .++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 4555667777765 4321 1579999999999 8876666888899999999999999876677788899
Q ss_pred CCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCch--hhhCCCCCCEEEcccc
Q 035490 82 SLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRN 139 (142)
Q Consensus 82 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n 139 (142)
+|+.+++++|.++...+..+..+++|+.|++++|+++ .+|. .+..+++|+.|++++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence 9999999999998433334788889999999999888 5655 5777888888888887
No 32
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=3.3e-15 Score=116.54 Aligned_cols=109 Identities=28% Similarity=0.421 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|+
T Consensus 442 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 442 SKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp TTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 445555555555 5555555555566666666666666655666666666666666666666656666666666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++.+|..++.+++|+.|++++|.+
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 666666666666666666666666666654
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.60 E-value=4.8e-15 Score=108.91 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+++..|..+..+++|+.|+
T Consensus 299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 678888888888 7777777777888888888888888766677777888888888888888766677788888888888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|++++..+..+..+++|+.|++++|+++
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 8888888433345677888888888888763
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=1.2e-14 Score=100.69 Aligned_cols=110 Identities=18% Similarity=0.289 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus 52 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 678888888887 7766666777778888888888888766666777788888888888887755444677788888888
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.+++ .+|..++.+++|+.|++++|.|+
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 88888874 25777888888888888888763
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=6.1e-15 Score=105.99 Aligned_cols=110 Identities=22% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
..+|+.|++++|. +.+..+..|..+++|+.|++++|.++...+..+..+.+|+.|++++|.+....+..+..+++|+.|
T Consensus 63 l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 3789999999999 998777889999999999999999996666678899999999999999987777889999999999
Q ss_pred EccCceeeecCchh-h---hCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIPEE-I---GCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p~~-~---~~~~~L~~L~l~~n~is 142 (142)
++++|+++ .+|.. + ..+++|+.|++++|.|+
T Consensus 142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999999 56654 3 56889999999999874
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=3.5e-15 Score=106.04 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. ++ .+|..+..+++|++|++++|.++ .+|+.+..+++|+.+++++|.+.+.+|..+..+++|+.|+
T Consensus 183 ~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 183 VNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp TTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 456666666665 55 45555666666666666666666 4555566666666666666666555666666666666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|.+.+.+|..+..+++|+.|++++|.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 66665555566666666666666666654
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=4.7e-15 Score=112.49 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..|..|..+++|++|++++|.+++..|..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus 56 ~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 56 SELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred ccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 445555555555 5544444555555555555555555544455555555555555555555533334455556666666
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|.+++ .+|..++.+++|+.|++++|.+
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 66666553 3466666666677777766654
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.3e-14 Score=101.57 Aligned_cols=107 Identities=25% Similarity=0.298 Sum_probs=59.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +. .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus 77 ~~L~~L~Ls~N~-l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSC-CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCc-CC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 455555555555 44 3444555566666666666666633334555666666666666666543333455556666666
Q ss_pred ccCceeeecCch-hhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++ .+|. .+..+++|+.|++++|.|
T Consensus 155 L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CTTSCCS-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccCHHHhcCcCCCCEEECCCCcC
Confidence 6666665 3333 344555666666655554
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=9.4e-15 Score=107.69 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=88.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..|..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 679999999999 9988888999999999999999999977778899999999999999999865556688899999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~ 138 (142)
+++|+++...+..+..+++|+.|++++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 999998843333455556666666655
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=4e-15 Score=111.62 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 568888888887 7776677777788888888888888766666777778888888888877755445577777788888
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|.+++ ..|..++.+++|+.|++++|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCc
Confidence 88777763 234556667777777777664
No 41
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.2e-14 Score=94.73 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=73.2
Q ss_pred EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490 35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114 (142)
Q Consensus 35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 114 (142)
+.+++++|. +. .+|..+. +.|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~-l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467777777 64 4555443 6778888888888865566777788888888888888754334466778888888888
Q ss_pred ceeeecCch-hhhCCCCCCEEEcccccC
Q 035490 115 NKLAGEIPE-EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 115 n~~~~~~p~-~~~~~~~L~~L~l~~n~i 141 (142)
|+++ .+|. .+..+++|+.|++++|++
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence 8887 4444 477778888888888875
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=9.1e-15 Score=101.68 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490 80 LFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 80 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n 139 (142)
+++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 333333333333333333333333333444444443333221222333344444444443
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=1e-14 Score=110.70 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..++.|++++|. +++..|..+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 567788888887 7776677777778888888888877766677777777788888887777766666777777777777
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..++.+++|+.|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcc
Confidence 777777633344566666777777776655
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=107.56 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|++++|. +.+..+..|..+++|+.|++++|.+++..|..+..+++|+.++++.|.++...+..+..+++|+.|+
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 568888888888 8877777788888888888888888866677788888888888888888744334567778888888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++.+..+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred CCCCccccCChhHccccccCCEEECCCCcc
Confidence 888887755566677777777777777654
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=1.7e-14 Score=109.30 Aligned_cols=110 Identities=18% Similarity=0.289 Sum_probs=97.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. +++..+..|..+++|++|++++|.+++..+..+..+++|+.++++.|.+++..+..+..+++|+.|+
T Consensus 76 ~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 76 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 789999999999 9987777899999999999999999955556789999999999999999865556799999999999
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.++. ..|..++.+++|+.|++++|.|+
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999974 35778888999999999999874
No 46
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.6e-15 Score=114.77 Aligned_cols=106 Identities=32% Similarity=0.451 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..|+.|++++|. +. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 224 ~~L~~L~Ls~n~-l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSC-CS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCC-CC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 679999999999 77 67878889999999999999999 89999999999999999999999 7899999999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.++ .+|..++.+++|+.|++++|.|+
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 9999998 88988999999999999999874
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=9.9e-15 Score=101.07 Aligned_cols=110 Identities=25% Similarity=0.217 Sum_probs=97.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
+.++.|++++|. +++..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 579999999999 9987777899999999999999999966667889999999999999999877667899999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 9999998444446888999999999999763
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=3e-14 Score=101.07 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=101.7
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI 88 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 88 (142)
..|.++.+.|.... ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35788888886432 579999999999 99877788999999999999999999777888999999999999
Q ss_pred cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+.|.+. .+|..+. ++|+.|++++|+++...+..+..+++|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 999998 6676554 7899999999999844445688899999999999876
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=1.8e-14 Score=109.32 Aligned_cols=110 Identities=24% Similarity=0.294 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+....|..+..+++|+.|+
T Consensus 32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 779999999999 8887777899999999999999999977788889999999999999999877788899999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|.+++..+..++.+++|+.|++++|.+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 9999998444467888999999999998763
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=1.4e-14 Score=101.61 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCccee-ecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRG-FLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +.+ ..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+....+..+..+++|+.+
T Consensus 150 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred cCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 445555555554 443 334444445555555555555554444444455555555555555543333344445555555
Q ss_pred EccCceeeecCchhhhCCC-CCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLF-KLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~i 141 (142)
++++|++++..|..+..++ +|+.|++++|++
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5555555544444444442 555555555543
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.5e-14 Score=98.95 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=23.0
Q ss_pred CCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 79 NLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 79 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
.+++|+.+++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 33334444444333332222223333444444444444431111123333444444444443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=1.3e-14 Score=101.86 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=99.0
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee-eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIA 109 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~ 109 (142)
.++++.|++++|. +.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus 125 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 125 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 3789999999999 988888888999999999999999986 57888889999999999999999777888999999999
Q ss_pred EEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 110 FHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 110 l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
|++++|++++..+..+..+++|+.|++++|.|.
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 999999998554557888999999999999874
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.1e-14 Score=94.03 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +. +.+|..+..+++|+.|++++|.+++. ..+..+++|+.+++++|.+.+.+|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 779999999999 87 67788888999999999999999854 678889999999999999997678777779999999
Q ss_pred EccCceeeecCc--hhhhCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIP--EEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~is 142 (142)
++++|.++ .++ ..+..+++|+.|++++|.|+
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999998 554 67888999999999999863
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.4e-14 Score=99.38 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.|
T Consensus 99 l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 99 LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp CTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 3789999999999 997777789999999999999999995555667889999999999999995444557889999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|+++ .+|..+....+|+.+++++|++
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 99999999 8888888888999999999986
No 55
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.5e-14 Score=95.69 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=76.8
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.. ++.+..+++|++|++++|.+++..+..+..+++|+.++++.|.+++..+..+..+++|+.|+
T Consensus 66 ~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 667777777776 552 23566777788888888877765666777777888888888887765666677777888888
Q ss_pred ccCce-eeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNK-LAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~-~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|. ++ .++ .+..+++|+.|++++|.|+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 88776 55 555 5677778888888877663
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=113.81 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCCcceeec-CccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc--ccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRGFL-SPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN--LSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~--~~~l~~L~ 108 (142)
++|+.|++++|. ..+.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.++++.|.+.+..|.. +..+++|+
T Consensus 48 ~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 48 EQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred ccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 344444444443 22222 344555555555555555555444555555555555555555555433332 55555666
Q ss_pred EEEccCceeeecCc-hhhhCCCCCCEEEcccccC
Q 035490 109 AFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 109 ~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~i 141 (142)
.|++++|.+++..+ ..++.+++|+.|++++|.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 66666666553322 3455666666666666654
No 57
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=4e-14 Score=93.47 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=89.5
Q ss_pred EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490 35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113 (142)
Q Consensus 35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~ 113 (142)
+.++++++. ++ .+|..+. ..++.|++++|.+.+..+. .+..+++|+.+++++|.+++..|..+..+++|+.|+++
T Consensus 11 ~~l~~s~~~-l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRG-LK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSC-CS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-cC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 688999998 75 5676554 3899999999999854443 38899999999999999998778899999999999999
Q ss_pred CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+|++++..+..+..+++|+.|++++|.|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 99999766667889999999999999874
No 58
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.5e-14 Score=108.46 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 112 (142)
.++.|++++|. +++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~-l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKD-LTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSC-CSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCC-CCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 47889999998 886 565 888999999999999999 888889999999999999999985 67 7888999999999
Q ss_pred cCceeeecC-chhhhCCCCCCEEEcccccCC
Q 035490 113 NNNKLAGEI-PEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 113 ~~n~~~~~~-p~~~~~~~~L~~L~l~~n~is 142 (142)
++|++++.. |..++.+++|+.|++++|.|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 999998554 888889999999999999763
No 59
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=6.2e-14 Score=92.69 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=88.7
Q ss_pred EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490 35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114 (142)
Q Consensus 35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 114 (142)
+.++++++. ++ .+|..+ .+.++.|++++|.++ .+|..+..+++|+.++++.|.++...+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~-l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG-LK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC-CS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-CC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467788887 66 456544 357999999999998 8888999999999999999999977667899999999999999
Q ss_pred ceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 115 n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
|++++..+..+..+++|+.|++++|.|+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 9999555667899999999999999874
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=6.4e-14 Score=99.26 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=92.2
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI 88 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 88 (142)
..|.++.+.|.... +.++.|++++|. +++..+..+..+++|++|++++|.+++..|..+..+++|+.+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36778888876422 678999999999 98777778899999999999999999777888999999999999
Q ss_pred cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+.|.++ .+|..+. ++|+.+++++|++++..+..+..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 999987 5565443 5677777777777644444566666666666666654
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=6.7e-14 Score=95.06 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCCCCCcEEEccC-cccccCCCccccCCCCCcE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNLFSLETLMITD-NSFSGLMPTNLSRCSNLIA 109 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~-n~~~~~~p~~~~~l~~L~~ 109 (142)
..++.|++++|. +++..+..+..+++|+.|++++|. ++...+..+..+++|+.+++++ |.++...+..+..+++|+.
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467888888888 776666677778888888888886 6644445677777888888877 7777544456777777777
Q ss_pred EEccCceeeecCchhhhCCCCCC---EEEcccc
Q 035490 110 FHANNNKLAGEIPEEIGCLFKLQ---KLSIRRN 139 (142)
Q Consensus 110 l~l~~n~~~~~~p~~~~~~~~L~---~L~l~~n 139 (142)
+++++|+++ .+|. +..+.+|+ .|++++|
T Consensus 110 L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEECCC-SCCC-CTTCCBCCSEEEEEEESC
T ss_pred EeCCCCCCc-cccc-cccccccccccEEECCCC
Confidence 777777666 3544 44555555 5555555
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=5.7e-14 Score=101.60 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=72.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc-ccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~~L~~l 110 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+. .+|.. +..+++|+.|
T Consensus 69 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 69 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 456777777776 66655556677777777777777777555555667777777777777776 34433 5667777777
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++..+..+..+++|+.|++++|.+
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 7777777644455566677777777777765
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=5.2e-14 Score=104.89 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=76.6
Q ss_pred CceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCCCCcEEEccCcccccCC
Q 035490 19 LGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLFSLETLMITDNSFSGLM 97 (142)
Q Consensus 19 ~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~n~~~~~~ 97 (142)
+|.+.++.+... ++++.|++++|. +.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.+++++|.+++.
T Consensus 108 ~N~l~~~~~~~l-~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSCSRG-QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEECCC-SSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCcccc-CCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 445555555433 667888888887 7776676777777888888888888766666654 567777777777776643
Q ss_pred CccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 98 PTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 98 p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+ ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.|
T Consensus 185 ~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 185 K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC
Confidence 2 22345666666666666663 344455566666666666654
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=5.2e-14 Score=107.06 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=80.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+++..|..++.+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 75 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 457777777777 7766666777778888888888887765566667788888888888887743333457778888888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|.+++..|..++.+++|+.|++++|.|
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 888888755566677778888888887765
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=8.2e-14 Score=102.36 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=86.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 668999999999 9988888899999999999999999976677888999999999999999855455688889999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~ 138 (142)
+++|+++...+..+..+++|+.|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCC
Confidence 999988744343555566666666655
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=5.4e-14 Score=106.11 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=94.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++ .+|.. .+++|+.|+
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 789999999999 98777788999999999999999999777888999999999999999998 56765 789999999
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|++++ ..|..++.+++|+.|++++|.|+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 99999984 34578999999999999998763
No 67
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=3e-14 Score=103.05 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|+++++. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 678999999998 7754444567899999999999999976677899999999999999999977677789999999999
Q ss_pred ccCceeeecCchh-hhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~is 142 (142)
+++|+++ .+|.. +..+++|+.|++++|.|.
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccC
Confidence 9999999 66654 688999999999999763
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=106.10 Aligned_cols=109 Identities=24% Similarity=0.280 Sum_probs=71.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcce-eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH-GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++|.+++..|..+..+++|+.+
T Consensus 421 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 556666666666 66555556666666666666666665 3556666666677777777777665556666667777777
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++..+..+..+++|+.|++++|++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 7777777644444566667777777777765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.6e-14 Score=101.79 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=69.3
Q ss_pred CcEEEEEcCCCCcceeecCccc--cCccccceeeeccCcceeeCChhhcCC-----CCCcEEEccCcccccCCCccccCC
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYV--GNLSFLRHINIADNSFHGEIPREIGNL-----FSLETLMITDNSFSGLMPTNLSRC 104 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~p~~~~~l 104 (142)
++++.|++++|. +.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|+.+++++|.+.+..+..+..+
T Consensus 95 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 567777777777 766666655 6677777777777777744 5555544 667777777777765555666667
Q ss_pred CCCcEEEccCceeeec--Cchhh--hCCCCCCEEEcccccC
Q 035490 105 SNLIAFHANNNKLAGE--IPEEI--GCLFKLQKLSIRRNLL 141 (142)
Q Consensus 105 ~~L~~l~l~~n~~~~~--~p~~~--~~~~~L~~L~l~~n~i 141 (142)
++|+.|++++|++.+. .+..+ ..+++|+.|++++|.|
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 7777777777765533 22222 5556666666666655
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=106.68 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++ .+|.. .+++|+.|+
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 667777777777 77665566777777777777777777666677777777777777777776 45554 567777777
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++ .+|..++.+++|+.|++++|.|
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccCCccccccchhhhccCCcceEEEecCccc
Confidence 77777764 3566777777777777777765
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=103.68 Aligned_cols=109 Identities=18% Similarity=0.291 Sum_probs=84.8
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus 52 ~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 678888888887 7776666777788888888888888766666777888888888888887744334577888888888
Q ss_pred ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|.+++ .+|..++.+++|+.|++++|.+
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 88888874 3577888888888888888875
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=103.75 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. +.+..|..+..+++|+.|++++|.++...+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus 56 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 678888888887 7777777777778888888888877743334466777777777777777765566666777777777
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|.+.+..+..+..+++|+.|++++|.+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 777776644455566666666666666654
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.9e-14 Score=91.31 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=75.1
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCc--cccCCCCCcEE
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPT--NLSRCSNLIAF 110 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~l 110 (142)
+++.|++++|. +.+. ..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .+|. .+..+++|+.+
T Consensus 43 ~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCC-CCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 77888888887 7754 56777778888888888887433333477788888888888876 4454 67777788888
Q ss_pred EccCceeeecCchh----hhCCCCCCEEEccccc
Q 035490 111 HANNNKLAGEIPEE----IGCLFKLQKLSIRRNL 140 (142)
Q Consensus 111 ~l~~n~~~~~~p~~----~~~~~~L~~L~l~~n~ 140 (142)
++++|.++ .+|.. +..+++|+.||++.|.
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888887 55553 6777788888887765
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=3.2e-14 Score=92.59 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=87.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCcc-ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLS-FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.+++.|++++|. +.. ++ .+..+. +|+.|++++|.+++. +.+..+++|+.+++++|.++...+..+..+++|+.|
T Consensus 19 ~~L~~L~l~~n~-l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSC-CCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCC-Cch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 679999999999 884 34 455555 899999999999954 578889999999999999985433445889999999
Q ss_pred EccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i 141 (142)
++++|++. .+|. .+..+++|+.|++++|.+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 99999997 6776 788899999999999986
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=8.4e-14 Score=106.96 Aligned_cols=108 Identities=21% Similarity=0.238 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 445555555555 5544444455555555555555555544444455555555555555555422222344555555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|++++..|..++.+++|+.|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCc
Confidence 55555542222334444445555554443
No 76
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=89.83 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=85.1
Q ss_pred CceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEcc
Q 035490 19 LGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT 89 (142)
Q Consensus 19 ~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 89 (142)
.|.|+.+.|.... .+++.|++++|. +++..+..+..+++|++|++++|.+++..+..+..+++|+.++++
T Consensus 8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4566666665422 679999999999 998888889999999999999999995555567899999999999
Q ss_pred CcccccCCCccccCCCCCcEEEccCceeeec
Q 035490 90 DNSFSGLMPTNLSRCSNLIAFHANNNKLAGE 120 (142)
Q Consensus 90 ~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~ 120 (142)
+|.+++..+..+..+++|+.+++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999965555688999999999999999754
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=8.5e-14 Score=105.88 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.+++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 567899999998 7765555577899999999999999977777899999999999999999977777789999999999
Q ss_pred ccCceeeecCch-hhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~is 142 (142)
+++|.++ .+|. .++.+++|+.|++++|.|+
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC
Confidence 9999999 5555 4688999999999999864
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.48 E-value=1.4e-14 Score=110.94 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=96.4
Q ss_pred CceeeeeEe-cCCCCcEEEEEcCCCCcceee-----------------cCcccc--CccccceeeeccCcceeeCChhhc
Q 035490 19 LGQWTGVTC-AHRHQKVAKLDLRKYQSLRGF-----------------LSPYVG--NLSFLRHINIADNSFHGEIPREIG 78 (142)
Q Consensus 19 ~~~~~g~~~-~~~~~~l~~L~l~~n~~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~ 78 (142)
.+.+.|+.- ....++++.|++++|. +++. +|..+. .+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 345666322 1233789999999999 8875 888888 899999999999998888898888
Q ss_pred CCCCCcEEEccCcc-ccc-CCCccccCC------CCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490 79 NLFSLETLMITDNS-FSG-LMPTNLSRC------SNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 79 ~l~~L~~l~l~~n~-~~~-~~p~~~~~l------~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i 141 (142)
.+++|+.++++.|. +++ .+|..+..+ ++|+.|++++|+++ .+|. .++.+++|+.|++++|.+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 89999999999998 776 677766665 78888888888888 7777 788888888888888765
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=2.6e-13 Score=95.79 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCCCCcEEEccCccccc---------------
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLFSLETLMITDNSFSG--------------- 95 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~n~~~~--------------- 95 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+. .+++|+.+++++|.++.
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence 445555555555 5544444455555555555555555543333332 34445555555554442
Q ss_pred ------CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 96 ------LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 96 ------~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
.+|..+..+++|+.+++++|+++ .+|..+..+++|+.|++++|.+
T Consensus 199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred CCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 22333444455555555555554 3444444455555555555543
No 80
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.7e-14 Score=89.80 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC-CCccccCCCCCcE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLIA 109 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~ 109 (142)
.++++.|++++|. +.+. ..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|.+++. .+..+..+++|+.
T Consensus 41 l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred cCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3889999999999 8865 7788899999999999999966887777899999999999999852 2377889999999
Q ss_pred EEccCceeeecCc---hhhhCCCCCCEEEcc
Q 035490 110 FHANNNKLAGEIP---EEIGCLFKLQKLSIR 137 (142)
Q Consensus 110 l~l~~n~~~~~~p---~~~~~~~~L~~L~l~ 137 (142)
+++++|++++..+ ..+..+++|+.|+++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999984333 368889999999986
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=1.9e-13 Score=103.69 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +.+..|..|..+++|++|++++|.+.+..|..+..+++|+.+++++|.++...+..+..+++|+.|
T Consensus 56 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 3789999999998 888788888889999999999999887778888888899999999888885445667788888888
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|++++.....+..+++|+.|++++|.+
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 8888888742223333477788888887765
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=3.3e-13 Score=95.60 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+. .+|..+..+++|+.++
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 445555555555 55555555555666666666666665444445555666666666666665 4555555556666666
Q ss_pred ccCceeeecCchhhhC------CCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGC------LFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~------~~~L~~L~l~~n~i 141 (142)
+++|++++.-+..+.. ...++.+++.+|++
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 6666665221222211 23455566666554
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=97.18 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=87.6
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcEEEccCcccccCCCc--cccCCCCC
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLETLMITDNSFSGLMPT--NLSRCSNL 107 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~p~--~~~~l~~L 107 (142)
.++++.|++++|. +.+..+..+..+++|++|++++|.++ .++. .+..+++|+.+++++|.+. .+|. .+..+++|
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L 151 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred CCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence 3789999999998 88877788889999999999999998 4554 4788999999999999988 4554 67788899
Q ss_pred cEEEccCc-eeeecCchhhhCCCCCCEEEcccccC
Q 035490 108 IAFHANNN-KLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 108 ~~l~l~~n-~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+.+++++| .+....+..+..+++|+.|++++|.+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999888 46644455677778888888888765
No 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=2.5e-13 Score=100.07 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. +.+. +.+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus 196 ~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 196 FNLKYLNLGMCN-IKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp TTCCEEECTTSC-CSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-cccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 556666666666 5532 2456667777777777777766667777777788888877777766666777777888888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..+..+..+++|+.|++++|++
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 888877733334566677788888887764
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=102.13 Aligned_cols=109 Identities=24% Similarity=0.259 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCcc-ccCCC--
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCS-- 105 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~-- 105 (142)
.++++.|++++|. +.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+.+++++|.+.+.+|.. +..++
T Consensus 323 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 3667777777777 776667777777777777777777764 34455666777777777777776434432 33333
Q ss_pred --------------------CCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 106 --------------------NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 106 --------------------~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+|+.|++++|+++ .+|..+..+++|+.|++++|+|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 5555555555555 5555555666777777777765
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=2e-13 Score=104.84 Aligned_cols=109 Identities=18% Similarity=0.226 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..|..+..+++|+.|++++|.+++..+..+..+++|+.++++.|.+.+..+..+..+++|++|+
T Consensus 49 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 567777777777 7766666666777777777777777632233466677777777777777644445666677777777
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|.+++..+..++.+++|+.|++++|.+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcc
Confidence 777776655455566666677777666654
No 87
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=99.24 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=74.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++|+.|++++|. ++. +| .+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus 185 ~~L~~L~L~~n~-l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 185 SNLRYLNLAMCN-LRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp SSCCEEECTTSC-CSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred cccCeecCCCCc-Ccc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 556666666666 552 22 356666777777777777766666777777777777777777766666677777788888
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++...+..+..+++|+.|++++|++
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 888877743344566777788888877764
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=2.9e-13 Score=101.50 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=98.2
Q ss_pred CceeeeeEe--cCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccccc-
Q 035490 19 LGQWTGVTC--AHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG- 95 (142)
Q Consensus 19 ~~~~~g~~~--~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~- 95 (142)
++...++.. ....++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred CCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 444555432 2333889999999999 998888889999999999999999996666668999999999999999975
Q ss_pred CCCccccCCCCCcEEEccCceeeecCc-hhhhCCCCCCEEEcccccCC
Q 035490 96 LMPTNLSRCSNLIAFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 96 ~~p~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~is 142 (142)
..|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 246678889999999999988433554 46888888899998888763
No 89
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=7.5e-13 Score=86.03 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=86.0
Q ss_pred EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490 34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113 (142)
Q Consensus 34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~ 113 (142)
.+.++++++. +.. +|..+ .+.|+.|++++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~-l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKG-LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSC-CSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCC-Ccc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4678899988 763 45433 3689999999999995555567889999999999999986555567889999999999
Q ss_pred CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+|++++..+..+..+++|+.|++++|.|+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce
Confidence 99999544455788999999999999874
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=5.2e-14 Score=111.13 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=95.4
Q ss_pred ceeeeeEe-cCCCCcEEEEEcCCCCccee-----------------ecCcccc--CccccceeeeccCcceeeCChhhcC
Q 035490 20 GQWTGVTC-AHRHQKVAKLDLRKYQSLRG-----------------FLSPYVG--NLSFLRHINIADNSFHGEIPREIGN 79 (142)
Q Consensus 20 ~~~~g~~~-~~~~~~l~~L~l~~n~~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~ 79 (142)
+.+.|+.. ....++|+.|++++|. +.+ .+|..+. .+++|+.|++++|.+.+.+|..+..
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 45666332 1233789999999999 887 3788877 8999999999999988889988999
Q ss_pred CCCCcEEEccCcc-ccc-CCCccccCC-------CCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccCC
Q 035490 80 LFSLETLMITDNS-FSG-LMPTNLSRC-------SNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 80 l~~L~~l~l~~n~-~~~-~~p~~~~~l-------~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~is 142 (142)
+++|+.+++++|. +++ .+|..+..+ ++|+.|++++|+++ .+|. .++.+++|+.|++++|.|+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 9999999999997 776 566655444 48888888888888 7787 7888888888888888763
No 91
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=6.1e-13 Score=94.80 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=50.2
Q ss_pred cCccccCccccceeeecc-CcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCch-hhh
Q 035490 49 LSPYVGNLSFLRHINIAD-NSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE-EIG 126 (142)
Q Consensus 49 ~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~ 126 (142)
+|. +..+.+|+.|++++ |.+.+..+..+..+.+|+.|+++.|.+++..|..|..+++|+.|+|++|+|+ .+|. .+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence 444 55555666666664 6665444455556666666666666665554555556666666666666665 3333 233
Q ss_pred CCCCCCEEEcccccC
Q 035490 127 CLFKLQKLSIRRNLL 141 (142)
Q Consensus 127 ~~~~L~~L~l~~n~i 141 (142)
.+. |+.|++.+|.|
T Consensus 102 ~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 102 GLS-LQELVLSGNPL 115 (347)
T ss_dssp SCC-CCEEECCSSCC
T ss_pred cCC-ceEEEeeCCCc
Confidence 332 66666666554
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=4.5e-13 Score=94.63 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +++. + ....+++|++|++++|.++ .+++.+..+++|+.+++++|.+. .+|..+..+++|+.++
T Consensus 169 ~~L~~L~L~~N~-l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 169 DTLEHLNLQYNF-IYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp TTCCEEECTTSC-CCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred CcCCEEECCCCc-Cccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence 566777777776 6644 2 2234778888899999888 56666889999999999999998 5688888999999999
Q ss_pred ccCceee-ecCchhhhCCCCCCEEEccc
Q 035490 112 ANNNKLA-GEIPEEIGCLFKLQKLSIRR 138 (142)
Q Consensus 112 l~~n~~~-~~~p~~~~~~~~L~~L~l~~ 138 (142)
+++|.+. +.++..+..+++|+.+++.+
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECCC
Confidence 9999998 56677788888888777764
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=4e-13 Score=95.56 Aligned_cols=103 Identities=18% Similarity=0.333 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+. +.+..+++|+.|++++|.+++ + +.+..+++|+.+++++|.+.+..+..+..+++|+.++
T Consensus 243 ~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 243 SQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 344444444444 3321 223444444444444444442 2 2344444455555554444433334444445555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..| +..+++|+.|++++|.|
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ccCCccccccC--hhhhhccceeehhhhcc
Confidence 55555542222 44445555555555544
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=6.1e-13 Score=100.39 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCcc-ccCC--
Q 035490 30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTN-LSRC-- 104 (142)
Q Consensus 30 ~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l-- 104 (142)
..++++.|++++|. +.+..|..+..+++|+.|++++|.+++ .+|..+..+++|+.+++++|.+.+.+|.. +..+
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 33677888888887 777677777777777888887777774 22344667777777777777776534432 3333
Q ss_pred --------------------CCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 105 --------------------SNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 105 --------------------~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
++|+.|++++|+++ .+|..+..+++|+.|++++|.|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 35556666666665 55555556677777777777653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=7.6e-13 Score=92.56 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +.+ .+.+..+++|++|++++|.+.+ + +.+..+++|+.+++++|.++.. ..+..+++|+.|
T Consensus 89 l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 89 LKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECCSSC-CCC--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCc-CCC--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 3556666666665 553 1235555556666666665552 2 2344555555555555555422 334445555555
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
++++|+++ .++. +..+++|+.|++++|.|
T Consensus 162 ~L~~N~l~-~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 162 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECCSSCCC-CCGG-GTTCTTCCEEECCSSCC
T ss_pred EccCCccc-cchh-hcCCCccCEEECCCCcC
Confidence 55555554 2222 44444555555554443
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=103.10 Aligned_cols=110 Identities=25% Similarity=0.223 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 578999999998 8888888888899999999999999977788888899999999999999877778888899999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|++.+..+..+..+++|+.|++++|.++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 9999988544556788889999999988763
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=1.8e-12 Score=90.64 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+. +.+..+++|+.|++++|.+++ + +.+..+++|+.+++++|.+.+. +. +..+++|+.|+
T Consensus 112 ~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLY 184 (291)
T ss_dssp TTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred CCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEE
Confidence 455555555555 4432 334455555555555555552 2 3445555555555555555532 22 44555555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|.++ .++ .+..+++|+.|++++|+
T Consensus 185 L~~N~i~-~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 185 LSKNHIS-DLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSCCC-BCG-GGTTCTTCSEEEEEEEE
T ss_pred CCCCcCC-CCh-hhccCCCCCEEECcCCc
Confidence 5555555 333 24455555555555554
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=1e-12 Score=89.19 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeecc-CcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc--
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIAD-NSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI-- 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~-- 108 (142)
++++.|++++|..++...+..+..+++|++|++++ |.++...+..+..+++|+.+++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 77888888888425555555777888888888887 88885555667788888888888888874 565 66667776
Q ss_pred -EEEccCc-eeeecCchhhhCCCCCC-EEEcccccC
Q 035490 109 -AFHANNN-KLAGEIPEEIGCLFKLQ-KLSIRRNLL 141 (142)
Q Consensus 109 -~l~l~~n-~~~~~~p~~~~~~~~L~-~L~l~~n~i 141 (142)
.+++++| .+++..+..+..+++|+ .|++++|.|
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 8888887 77733334567777777 888877765
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=8.5e-13 Score=98.35 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
++|+.|++++|. +.+..|..+. .++.|+.|++++|.+++. + ....+++|+.+++++|.+++ +|..+..+++|+.|
T Consensus 144 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 789999999999 9988887776 789999999999999955 3 24468999999999999995 45668889999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred EecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 99999999 57888888999999999999863
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=1.4e-12 Score=90.01 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+ +..+++|+.|++++|.++ .++.. .. .+|+.+++++|.+++ + ..+..+++|+.|+
T Consensus 63 ~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 63 TNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILS 134 (263)
T ss_dssp TTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEE
T ss_pred CCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEE
Confidence 556666666666 554322 555666666666666665 23321 12 455555555555542 2 2355555555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++ .++ .+..+++|+.|++++|.|
T Consensus 135 Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 135 IRNNKLK-SIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp CTTSCCC-BCG-GGGGCTTCCEEECTTSCC
T ss_pred CCCCcCC-CCh-HHccCCCCCEEECCCCcC
Confidence 5555555 332 344555555555555544
No 101
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2e-12 Score=91.08 Aligned_cols=80 Identities=16% Similarity=0.361 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+. +.+..+++|++|++++|.+++ ++ .+..+++|+.+++++|.+++. +. +..+++|+.|+
T Consensus 85 ~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 85 TKITELELSGNP-LKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CSCCEEECCSCC-CSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCEEEccCCc-CCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 444444444444 4321 123444444444444444442 22 133444444444444444321 11 33334444444
Q ss_pred ccCceee
Q 035490 112 ANNNKLA 118 (142)
Q Consensus 112 l~~n~~~ 118 (142)
+++|+++
T Consensus 158 l~~n~l~ 164 (308)
T 1h6u_A 158 IGNAQVS 164 (308)
T ss_dssp CCSSCCC
T ss_pred ccCCcCC
Confidence 4444443
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=1.8e-13 Score=96.47 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceee--CChhh--cCCCCCcEEEccCcccccC--CC-ccccCCC
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE--IPREI--GNLFSLETLMITDNSFSGL--MP-TNLSRCS 105 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~l~l~~n~~~~~--~p-~~~~~l~ 105 (142)
+++.|++++|. +.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|+.+++++|.++.. ++ ..+..++
T Consensus 150 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 150 GLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 34444444444 4433334444444444444444444322 11222 3444444444444444310 01 1122344
Q ss_pred CCcEEEccCceeeecCc-hhhhCCCCCCEEEcccccC
Q 035490 106 NLIAFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 106 ~L~~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~i 141 (142)
+|+.|++++|++++..| ..+..+++|+.|++++|.|
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 55555555555543222 2233344555555555544
No 103
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=8.4e-13 Score=93.60 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=75.5
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.++ .+|..+..+++|+.++
T Consensus 193 ~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 467777777777 77666667777777888888888777555556777778888888888777 5677777777788888
Q ss_pred ccCceeeecCchhhhC------CCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGC------LFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~------~~~L~~L~l~~n~i 141 (142)
+++|++++.-+..+.. ...++.+++.+|++
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 8887777332333332 24567777777754
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.4e-12 Score=90.63 Aligned_cols=101 Identities=25% Similarity=0.394 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+. + .+..+++|++|++++|.+++ ++. +..+++|+.+++++|.++. ++. +..+++|+.|+
T Consensus 107 ~~L~~L~l~~n~-l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK 179 (308)
T ss_dssp TTCCEEECTTSC-CCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEECCCCC-CCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence 556666666665 5532 2 24555555555555555552 222 4455555555555555542 222 44445555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++ .++. +..+++|+.|++++|.|
T Consensus 180 l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 180 ADDNKIS-DISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCSSCCC-CCGG-GGGCTTCCEEECTTSCC
T ss_pred CCCCccC-cChh-hcCCCCCCEEEccCCcc
Confidence 5555554 2222 34444444455444443
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=9.9e-13 Score=99.71 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=93.0
Q ss_pred ceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCC-C
Q 035490 20 GQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLM-P 98 (142)
Q Consensus 20 ~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~-p 98 (142)
+...++.-....++|+.|++++|. +. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |
T Consensus 451 n~l~~lp~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 451 KDLTVLCHLEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp SCCSSCCCGGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred CCCCCCcCccccccCcEeecCccc-cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence 334444333334789999999999 88 778899999999999999999994 77 8999999999999999999665 8
Q ss_pred ccccCCCCCcEEEccCceeeecCch---hhhCCCCCCEEEc
Q 035490 99 TNLSRCSNLIAFHANNNKLAGEIPE---EIGCLFKLQKLSI 136 (142)
Q Consensus 99 ~~~~~l~~L~~l~l~~n~~~~~~p~---~~~~~~~L~~L~l 136 (142)
..+..+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999999844332 2345789999874
No 106
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.2e-12 Score=83.91 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
.+++.|++++|. +.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 779999999999 9988788899999999999999999954444568899999999999999955444588999999999
Q ss_pred ccCceeee
Q 035490 112 ANNNKLAG 119 (142)
Q Consensus 112 l~~n~~~~ 119 (142)
+++|.+..
T Consensus 112 L~~N~~~c 119 (174)
T 2r9u_A 112 LYNNPWDC 119 (174)
T ss_dssp CCSSCBCT
T ss_pred eCCCCccc
Confidence 99999974
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.9e-13 Score=93.66 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=74.3
Q ss_pred CcEEEEEcCCCCcceeecCccc--cCccccceeeeccCcceeeCC----hhhcCCCCCcEEEccCcccccCCCccccCCC
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYV--GNLSFLRHINIADNSFHGEIP----REIGNLFSLETLMITDNSFSGLMPTNLSRCS 105 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~ 105 (142)
.++++|++++|. +.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.++++.|.+....+..+..++
T Consensus 91 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 348888888888 887777776 778888888888888875443 2234577788888888888766566777777
Q ss_pred CCcEEEccCceeeec--Cc--hhhhCCCCCCEEEcccccC
Q 035490 106 NLIAFHANNNKLAGE--IP--EEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 106 ~L~~l~l~~n~~~~~--~p--~~~~~~~~L~~L~l~~n~i 141 (142)
+|+.|++++|++.+. ++ ..++.+++|+.|++++|.|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 788888887776431 11 1124455566666666554
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=2.6e-12 Score=91.34 Aligned_cols=105 Identities=28% Similarity=0.388 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.++++.|++++|. +.+..+ +..+++|++|++++|.+++ + +.+..+++|+.+++++|.++. + ..+..+++|+.+
T Consensus 220 ~~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 220 MTRLNSLKIGNNK-ITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred CCcCCEEEccCCc-cCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 3678888888888 775433 7788888999999888873 3 467788899999999998874 3 457788899999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
++++|++++..+..+..+++|+.|++++|+++
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99999998666777888999999999999864
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=2.2e-13 Score=95.83 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=33.4
Q ss_pred cCCCCCcEEEccCcccccCCCccccCC---CCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 78 GNLFSLETLMITDNSFSGLMPTNLSRC---SNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 78 ~~l~~L~~l~l~~n~~~~~~p~~~~~l---~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
..+++|+.+++++|.+.+..|..+..+ ++|+.|++++|+++ .+|..+. ++|+.|++++|+|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 344555566666666554445444443 45666666666665 4554432 4566666666654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=4.2e-12 Score=96.93 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=33.3
Q ss_pred ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490 53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ 132 (142)
Q Consensus 53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~ 132 (142)
+..+++|+.|++++|.+.+ + +.+..+++|+.|+++.|.+... ..+..+++|+.|++++|.+.+..| +..+++|+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 3344444444444444442 2 2233444444444444444321 233444444444444444442211 33344444
Q ss_pred EEEccccc
Q 035490 133 KLSIRRNL 140 (142)
Q Consensus 133 ~L~l~~n~ 140 (142)
.|++++|.
T Consensus 179 ~L~Ls~N~ 186 (605)
T 1m9s_A 179 NLYLSKNH 186 (605)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 44444443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=3.2e-12 Score=97.57 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=93.2
Q ss_pred CceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC
Q 035490 19 LGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP 98 (142)
Q Consensus 19 ~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p 98 (142)
.|...++......++|+.|++++|. +.+. +.+..+++|+.|++++|.+++ + ..+..+++|+.|+++.|.+.+..|
T Consensus 96 ~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDLSSLKDLKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCCTTSTTCTTCCEEECTTSC-CCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCChhhccCCCCCEEEecCCC-CCCC--ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh
Confidence 3344444434444789999999998 8753 468889999999999999994 4 578899999999999999986544
Q ss_pred ccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 99 TNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 99 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+..+++|+.|++++|++. .++ .+..+++|+.|++++|.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEEE
T ss_pred --hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCcC
Confidence 888999999999999998 554 588899999999999875
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.8e-12 Score=100.83 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=80.0
Q ss_pred cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCC
Q 035490 49 LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCL 128 (142)
Q Consensus 49 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~ 128 (142)
.+..+..+..|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3566788899999999999999 88888889999999999999999 88999999999999999999999 889999999
Q ss_pred CCCCEEEcccccCC
Q 035490 129 FKLQKLSIRRNLLT 142 (142)
Q Consensus 129 ~~L~~L~l~~n~is 142 (142)
++|+.|+|++|.|+
T Consensus 293 ~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT 306 (727)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999999874
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.2e-11 Score=85.30 Aligned_cols=101 Identities=21% Similarity=0.316 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.. ++ .+..+++|+.|++++|.++ .+++ +..+++|+.+++++|.+++ ++.. .. ++|+.|+
T Consensus 41 ~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred CcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 789999999998 874 44 6888999999999999999 4554 8899999999999999984 4543 33 8999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+++|+++ .++ .+..+++|+.|++++|.|+
T Consensus 113 L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 113 LDNNELR-DTD-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCCS-BSG-GGTTCTTCCEEECTTSCCC
T ss_pred ccCCccC-CCh-hhcCcccccEEECCCCcCC
Confidence 9999998 554 5888999999999999874
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.2e-11 Score=88.01 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=81.8
Q ss_pred CceeeeeEecCC-----------CCcEEEEEcCC-CCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEE
Q 035490 19 LGQWTGVTCAHR-----------HQKVAKLDLRK-YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL 86 (142)
Q Consensus 19 ~~~~~g~~~~~~-----------~~~l~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 86 (142)
.|.+..+.|... ..+|+.|++++ |. +.+..+..|..+++|+.|++++|.+++..|..|..+++|+.|
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 366666666544 25699999996 88 998777889999999999999999998888889999999999
Q ss_pred EccCcccccCCCccccCCCCCcEEEccCceeee
Q 035490 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAG 119 (142)
Q Consensus 87 ~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~ 119 (142)
++++|.+++..+..+..+. |+.|++.+|.+..
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999999954344455444 9999999999974
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=6.8e-14 Score=92.64 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+.+++++|.+++ +| .+..+++|+.++
T Consensus 48 ~~L~~L~ls~n~-l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEE-ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCC-Ccc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 678999999998 776 55 7788889999999999988 777777777889999999998874 44 577778899999
Q ss_pred ccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i 141 (142)
+++|+++ .++. .+..+++|+.|++++|.+
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEEEecCCcc
Confidence 9999888 4443 577888899999988865
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=1.2e-11 Score=91.44 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+ +..+++|+.|++++|.+++..+ +..+++|+.+++++|.+++. ..+..+++|+.++
T Consensus 287 ~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 287 TALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp TTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 344444444444 333211 3444445555555555443222 34455555555555555432 2344555555555
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++..| +..+++|+.|++++|.+
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 55555553332 45555566666655543
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3.3e-12 Score=96.86 Aligned_cols=114 Identities=24% Similarity=0.323 Sum_probs=66.5
Q ss_pred cccCcCCCCCc-----eeeee-EecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCC
Q 035490 10 TTSLNNSINLG-----QWTGV-TCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSL 83 (142)
Q Consensus 10 ~~~~~~~~~~~-----~~~g~-~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 83 (142)
+..|......| .|.++ .|.. .+++.|++++|. +.+ +|..+ +++|+.|++++|.++ .+| ..+++|
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 45676666667 67777 5653 467777777777 665 55544 256677777777766 555 345566
Q ss_pred cEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 84 ETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 84 ~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+.+++++|.+++ +|. +.. +|+.|++++|+++ .+|. .+++|+.|++++|.|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQL 152 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC---cCccccEEeCCCCcc
Confidence 666666666653 444 332 5555555555555 2443 334444444444443
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=6.5e-14 Score=92.75 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCCcceeecCc------cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCC
Q 035490 32 QKVAKLDLRKYQSLRGFLSP------YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS 105 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~ 105 (142)
..++.++++.+. +.+..|. .+..+++|+.|++++|.+++ +| .+..+++|+.+++++|.+. .+|..+..++
T Consensus 18 ~~l~~l~l~~~~-l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEE-CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeE-eccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 345555555555 5555554 78889999999999999994 77 8889999999999999998 6787777778
Q ss_pred CCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 106 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+|+.|++++|+++ .+| .+..+++|+.|++++|.|+
T Consensus 94 ~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 94 TLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECC
T ss_pred cCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCC
Confidence 9999999999998 555 6788899999999999874
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.25 E-value=2.4e-11 Score=89.82 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +.+..+ +..+++|+.|++++|.+.+ ++. +..+++|+.+++++|.+.+..| +..+++|+.++
T Consensus 265 ~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 265 TKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp TTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCEEECCCCc-cCcccc--ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 445555555554 443222 4445555555555555552 221 4455566666666665553322 45556666666
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|++++ + ..+..+++|+.|++++|.+
T Consensus 338 l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 338 FYNNKVSD-V-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCSSCCCC-C-GGGTTCTTCCEEECCSSCC
T ss_pred CCCCccCC-c-hhhccCCCCCEEeCCCCcc
Confidence 66666652 2 3455666677777766655
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=3e-11 Score=91.69 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCC----
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL---- 107 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L---- 107 (142)
++|+.|++++|. +++ +|. .+++|+.|++++|.+++ +|. +. ++|+.+++++|.++ .+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 140 ALLEYINADNNQ-LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp TTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred ccccEEeCCCCc-cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 456666666666 554 333 35667777777777773 555 44 67888888888887 5666 443 66
Q ss_pred ---cEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 108 ---IAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 108 ---~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
+.|++++|+++ .+|..+..+++|+.|++++|+|+
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 88899999888 78887777889999999999874
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=2.5e-12 Score=92.93 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=79.5
Q ss_pred CcEEEEEcCCCCccee-----ecCccccCccccceeeeccCcce----eeCChhhcCCCCCcEEEccCcccccC----CC
Q 035490 32 QKVAKLDLRKYQSLRG-----FLSPYVGNLSFLRHINIADNSFH----GEIPREIGNLFSLETLMITDNSFSGL----MP 98 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~l~l~~n~~~~~----~p 98 (142)
++++.|++++|. +.. ..+..+..+++|+.|++++|.++ ..++..+..+++|+.+++++|.++.. ++
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 567888888887 662 23336677788888888888875 45666777788888888888887643 34
Q ss_pred cccc--CCCCCcEEEccCceeee----cCchhh-hCCCCCCEEEcccccCC
Q 035490 99 TNLS--RCSNLIAFHANNNKLAG----EIPEEI-GCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 99 ~~~~--~l~~L~~l~l~~n~~~~----~~p~~~-~~~~~L~~L~l~~n~is 142 (142)
..+. .+++|+.|++++|.++. .+|..+ ..+++|+.|++++|.|+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4453 37788888888888885 366665 55788888888888764
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=5.4e-11 Score=88.04 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=43.0
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
++++.|++++|. +++. | .+..+++|+.|++++|.+++ ++ +..+++|+.+++++|.+++. + +..+++|+.|+
T Consensus 42 ~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 444555555554 4432 2 34444455555555554442 22 34444444555544444421 1 34444444444
Q ss_pred ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 140 (142)
+++|+++ .++ ++.+++|+.|++++|.
T Consensus 113 L~~N~l~-~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 113 CDTNKLT-KLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp CCSSCCS-CCC--CTTCTTCCEEECTTSC
T ss_pred CCCCcCC-eec--CCCCCcCCEEECCCCc
Confidence 4444444 222 3344444444444443
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.22 E-value=5e-12 Score=89.46 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCCcceee-cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc-ccccC-CCccccCCCCCc
Q 035490 32 QKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN-SFSGL-MPTNLSRCSNLI 108 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~~~~~-~p~~~~~l~~L~ 108 (142)
++++.|++++|. +.+. ++..+..+++|++|++++|.+++..+..+..+++|+.+++++| .+++. ++..+..+++|+
T Consensus 93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 445555555554 4433 3344444555555555555554444444445555555555555 33321 233344455555
Q ss_pred EEEccCc-eeeec-CchhhhCCC-CCCEEEcccc
Q 035490 109 AFHANNN-KLAGE-IPEEIGCLF-KLQKLSIRRN 139 (142)
Q Consensus 109 ~l~l~~n-~~~~~-~p~~~~~~~-~L~~L~l~~n 139 (142)
.|++++| .+++. ++..+..++ +|+.|++++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5555555 44422 333444455 5555555555
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=3.3e-11 Score=86.14 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcE-E
Q 035490 18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLET-L 86 (142)
Q Consensus 18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-l 86 (142)
..|.++.+.|.... .++++|++++|. ++...+..|..+++|++|++++|.+.+.++. .+..++++.. +
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 34667777776422 579999999999 8865556789999999999999998766654 4667777665 4
Q ss_pred EccCcccccCCCccccCCCCCcEEEccCceee
Q 035490 87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118 (142)
Q Consensus 87 ~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~ 118 (142)
.+..|++....|+.+..+++|+.+++++|++.
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cccCCcccccCchhhhhccccccccccccccc
Confidence 56678888666777888899999999988886
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=2.1e-12 Score=91.45 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee-CChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE-IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
+.++.|++++|. +.+..+. +..+++|++|++++|.+++. ++..+..+++|+.+++++|.+++..+..+..+++|+.|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCcc-ccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 345555555555 5443332 34455555556555555433 44445555555666555555544444445555555556
Q ss_pred EccCc-eeeec-CchhhhCCCCCCEEEcccc
Q 035490 111 HANNN-KLAGE-IPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 111 ~l~~n-~~~~~-~p~~~~~~~~L~~L~l~~n 139 (142)
++++| .+++. ++..+..+++|+.|++++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 55555 34421 3444455555555555555
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=8.2e-12 Score=89.63 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCcceeecCccccCc-----cccceeeeccCcceeeCChh----hcCC-CCCcEEEccCcccccCCCccc-
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNL-----SFLRHINIADNSFHGEIPRE----IGNL-FSLETLMITDNSFSGLMPTNL- 101 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~l~l~~n~~~~~~p~~~- 101 (142)
+++.|++++|. +.+..+..+..+ +.|++|++++|.+++..+.. +..+ ++|+.+++++|.++...+..+
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 56777777776 665544444443 66777777777766444432 2233 567777777777664433222
Q ss_pred ---cC-CCCCcEEEccCceeeec----CchhhhCCC-CCCEEEcccccC
Q 035490 102 ---SR-CSNLIAFHANNNKLAGE----IPEEIGCLF-KLQKLSIRRNLL 141 (142)
Q Consensus 102 ---~~-l~~L~~l~l~~n~~~~~----~p~~~~~~~-~L~~L~l~~n~i 141 (142)
.. ..+|+.|++++|.++.. ++..+..++ +|+.|++++|.|
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 22 24677777777776632 223334443 677777777765
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.15 E-value=2.2e-10 Score=87.78 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=63.0
Q ss_pred cccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEc
Q 035490 57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI 136 (142)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l 136 (142)
++|+.|++++|.++ .+| ..+++|+.+++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 56778888888777 355 35578888888888887 5565 5678999999999999 88888999999999999
Q ss_pred ccccCC
Q 035490 137 RRNLLT 142 (142)
Q Consensus 137 ~~n~is 142 (142)
++|+|+
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 999874
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=2.7e-10 Score=84.32 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=44.1
Q ss_pred ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490 53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ 132 (142)
Q Consensus 53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~ 132 (142)
+..+++|+.|++++|.+++ +| +..+++|+.++++.|.+++. .+..+++|+.+++++|++++ +| ++.+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 3444555555555555552 33 44555555555555555532 24555666666666666663 44 55556666
Q ss_pred EEEcccccC
Q 035490 133 KLSIRRNLL 141 (142)
Q Consensus 133 ~L~l~~n~i 141 (142)
.|++++|.+
T Consensus 237 ~L~l~~N~l 245 (457)
T 3bz5_A 237 YFDCSVNPL 245 (457)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCcC
Confidence 666666654
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=1.1e-11 Score=89.53 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcce-eecC---ccccCccccceeeeccCcceee-----CChhhcCCCCCcEEEccCcccc----cCCCc
Q 035490 33 KVAKLDLRKYQSLR-GFLS---PYVGNLSFLRHINIADNSFHGE-----IPREIGNLFSLETLMITDNSFS----GLMPT 99 (142)
Q Consensus 33 ~l~~L~l~~n~~~~-~~~~---~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~l~l~~n~~~----~~~p~ 99 (142)
+++.|++++|. +. ..++ ..+..++.|++|++++|.+... .+..+..+++|+.+++++|.++ ..+|.
T Consensus 160 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 160 PLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555554 43 1122 2333445555555555555421 1224445555666666666553 23444
Q ss_pred cccCCCCCcEEEccCceeeec----CchhhhC--CCCCCEEEcccccC
Q 035490 100 NLSRCSNLIAFHANNNKLAGE----IPEEIGC--LFKLQKLSIRRNLL 141 (142)
Q Consensus 100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~--~~~L~~L~l~~n~i 141 (142)
.+..+++|+.|++++|.+++. ++..+.. +++|+.|++++|.|
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 555555666666666665532 2333322 55666666666654
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.11 E-value=2.4e-11 Score=93.03 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCcccCcCCCCCceeeee--------EecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcC
Q 035490 8 GFTTSLNNSINLGQWTGV--------TCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGN 79 (142)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~--------~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 79 (142)
.+...|...++.|.|+|. .|.. ..++.|++++|. ++ .+|..+. ++|+.|++++|.++ .+|. .
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~-L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~ 79 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLT-SLPA---L 79 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSC-CS-CCCSCCC--TTCSEEEECSCCCS-CCCC---C
T ss_pred HHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCC-cC-ccChhhC--CCCcEEEecCCCCC-CCCC---c
Confidence 335667777777877542 1211 335566666665 55 3444333 45555555555555 3443 3
Q ss_pred CCCCcEEEccCcccccCCCccccCCCCCcEEEccCceee
Q 035490 80 LFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118 (142)
Q Consensus 80 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~ 118 (142)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 445555555555554 2333 2344444444444444
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.09 E-value=4e-11 Score=86.04 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCcceeecC----ccccCcc-ccceeeeccCcceeeCChhhcCC-----CCCcEEEccCcccccCCCcc-
Q 035490 32 QKVAKLDLRKYQSLRGFLS----PYVGNLS-FLRHINIADNSFHGEIPREIGNL-----FSLETLMITDNSFSGLMPTN- 100 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~p~~- 100 (142)
++++.|++++|. +.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+.+++++|.++...+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 569999999999 887655 6677788 89999999999997666666664 89999999999998665543
Q ss_pred ---ccCC-CCCcEEEccCceeeecCchhh----hC-CCCCCEEEcccccCC
Q 035490 101 ---LSRC-SNLIAFHANNNKLAGEIPEEI----GC-LFKLQKLSIRRNLLT 142 (142)
Q Consensus 101 ---~~~l-~~L~~l~l~~n~~~~~~p~~~----~~-~~~L~~L~l~~n~is 142 (142)
+..+ ++|+.|++++|+++...+..+ .. ..+|+.|++++|.|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 4444 799999999999985444333 33 258999999999863
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.06 E-value=7.6e-10 Score=81.84 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 94 (142)
++++.|++++|. +.+ +| .+..+++|++|++++|.+++ +|.. ..+|+.+++++|.+.
T Consensus 131 ~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE 186 (454)
T ss_dssp TTCCEEECCSSC-CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCC-CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC
Confidence 456666666666 554 44 35556666666666665552 3321 124444444444444
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=2e-11 Score=89.65 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=48.5
Q ss_pred ccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccCCCccccC-----CCCCcEEEccCceeee----cCchh
Q 035490 58 FLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGLMPTNLSR-----CSNLIAFHANNNKLAG----EIPEE 124 (142)
Q Consensus 58 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~l~l~~n~~~~----~~p~~ 124 (142)
+|++|++++|.+++. ++..+..+++|+.+++++|.++...+..+.. .++|+.|++++|.++. .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 455555555554432 2333444566667777666665332222221 4567777777777764 45556
Q ss_pred hhCCCCCCEEEcccccCC
Q 035490 125 IGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 125 ~~~~~~L~~L~l~~n~is 142 (142)
+..+++|+.|++++|.|+
T Consensus 394 l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHCCCCCEEECCSSSCC
T ss_pred HHhCCCccEEECCCCCCC
Confidence 666777777777777653
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=6.4e-10 Score=79.47 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=81.9
Q ss_pred EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC-ccccCCCCCcE-EEc
Q 035490 35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP-TNLSRCSNLIA-FHA 112 (142)
Q Consensus 35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~-l~l 112 (142)
+.++.+++. ++ .+|..+ ...+++|++++|.++...+..|..+++|+.|++++|.+.+.++ ..|.+++++.. +.+
T Consensus 12 ~~v~C~~~~-Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 356778887 77 567655 3679999999999994334568999999999999999865555 45788888765 556
Q ss_pred cCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 113 ~~n~~~~~~p~~~~~~~~L~~L~l~~n~is 142 (142)
..|+++...|..|..+++|+.|++++|.|.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccc
Confidence 678898555677899999999999999763
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.01 E-value=1.2e-09 Score=80.86 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=36.8
Q ss_pred cccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEc
Q 035490 57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI 136 (142)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l 136 (142)
++|++|++++|.+++ +| .+..+++|+.+++++|.+++ +|..+ .+|+.+++++|+++ .+| .++.+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEEC
Confidence 345555555555552 44 35555555555555555552 33322 24445555555444 233 2444444444444
Q ss_pred cccc
Q 035490 137 RRNL 140 (142)
Q Consensus 137 ~~n~ 140 (142)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.95 E-value=7.1e-11 Score=86.74 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcceeeCChhhcC-----CCCCcEEEccCcccccC----CC
Q 035490 32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHGEIPREIGN-----LFSLETLMITDNSFSGL----MP 98 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~~----~p 98 (142)
++++.|++++|. ++.. ++..+..++.|++|++++|.+.+..+..+.. .++|+.+++++|.++.. ++
T Consensus 256 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 256 SRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 344444444444 4432 2333333444555555555444322222211 13555555555555432 22
Q ss_pred ccccCCCCCcEEEccCceeeecCchhhhC-----CCCCCEEEcccccC
Q 035490 99 TNLSRCSNLIAFHANNNKLAGEIPEEIGC-----LFKLQKLSIRRNLL 141 (142)
Q Consensus 99 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----~~~L~~L~l~~n~i 141 (142)
..+..+++|+.+++++|.+....+..+.. .++|+.|++++|.|
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 33444566666666666665322222221 44666666666655
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=82.31 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCcceeecCccc-----cCccccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccC----CCc
Q 035490 33 KVAKLDLRKYQSLRGFLSPYV-----GNLSFLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGL----MPT 99 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~ 99 (142)
+++.|++++|. +.......+ ...+.|++|++++|.++.. ++..+...++|+.+++++|.++.. ++.
T Consensus 127 ~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 127 RARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp TEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred hccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 45555666555 543222222 1235567777777766531 233345566777777777776532 133
Q ss_pred cccCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccCC
Q 035490 100 NLSRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~is 142 (142)
.+...++|+.|++++|.++.. ++..+...++|+.|++++|.|+
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 455566777777777777632 2233445567778888777763
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=9.7e-10 Score=79.40 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=80.5
Q ss_pred CcEEEEEcCCCCcceeecCccc-cCccccceeeeccCcceeeCChhh-----cCCCCCcEEEccCcccccC----CCccc
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYV-GNLSFLRHINIADNSFHGEIPREI-----GNLFSLETLMITDNSFSGL----MPTNL 101 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~l~l~~n~~~~~----~p~~~ 101 (142)
.+++.|++++|. +.......+ ..+.+|++|++++|.++......+ ...+.|+.+++++|.++.. ++..+
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 579999999998 765433333 345678999999999875433333 2457899999999998642 33445
Q ss_pred cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccCC
Q 035490 102 SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLLT 142 (142)
Q Consensus 102 ~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~is 142 (142)
...++|+.|++++|.+... ++..+...++|+.|++++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 6788999999999998732 2445666788999999999874
No 139
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=3.2e-09 Score=69.53 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=84.2
Q ss_pred CCcEEEEEcCCC-Ccceee----cCccccCccccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccC----C
Q 035490 31 HQKVAKLDLRKY-QSLRGF----LSPYVGNLSFLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGL----M 97 (142)
Q Consensus 31 ~~~l~~L~l~~n-~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~ 97 (142)
.+.++.|++++| . +... +...+...+.|++|++++|.+... +...+...++|+.|++++|.++.. +
T Consensus 35 ~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 378999999999 7 7643 334456678899999999998743 334455668899999999999843 3
Q ss_pred CccccCCCCCcEEEc--cCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490 98 PTNLSRCSNLIAFHA--NNNKLAGE----IPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 98 p~~~~~l~~L~~l~l--~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i 141 (142)
...+...+.|+.|++ +.|.+... +.+.+...++|+.|++++|.|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 456677789999999 88999743 334555668999999999875
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1.2e-07 Score=67.05 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=83.6
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc-EEEccCcccccCCCccccCCCCCcEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE-TLMITDNSFSGLMPTNLSRCSNLIAF 110 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~l~l~~n~~~~~~p~~~~~l~~L~~l 110 (142)
.+++.+++++|. ++......|..+.+|+.+++..| +....+..|..+.+|+ .+.+.. .++..-+..|..+++|+.+
T Consensus 226 ~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 679999999998 88766677888999999999988 6645556788899999 999988 6664556789999999999
Q ss_pred EccCceeeecCchhhhCCCCCCEEEc
Q 035490 111 HANNNKLAGEIPEEIGCLFKLQKLSI 136 (142)
Q Consensus 111 ~l~~n~~~~~~p~~~~~~~~L~~L~l 136 (142)
++..|.++..-+..|..+++|+.+..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999988343457888889988764
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=3.9e-08 Score=67.99 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred ccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCccccCCC--CCcEEEccCceeeecCc-------hh
Q 035490 56 LSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS--NLIAFHANNNKLAGEIP-------EE 124 (142)
Q Consensus 56 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~--~L~~l~l~~n~~~~~~p-------~~ 124 (142)
+++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+. ..+..+. +|+.|++.+|.+.+.+| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4566677777777664 3344455666677777777766632 2222222 66677777766664333 13
Q ss_pred hhCCCCCCEEE
Q 035490 125 IGCLFKLQKLS 135 (142)
Q Consensus 125 ~~~~~~L~~L~ 135 (142)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666665
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.55 E-value=1.2e-08 Score=77.09 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=59.8
Q ss_pred ccCccccceeeeccCc--ceeeCChhhc-CCCCCcEEEccCcccccC-CCccccCCCCCcEEEccCceeeec-CchhhhC
Q 035490 53 VGNLSFLRHINIADNS--FHGEIPREIG-NLFSLETLMITDNSFSGL-MPTNLSRCSNLIAFHANNNKLAGE-IPEEIGC 127 (142)
Q Consensus 53 l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~ 127 (142)
+..+++|+.|++++|. +++.....+. .+++|+.++++.|.+++. ++..+..+++|+.|++++|.++.. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4446677777776433 4433333333 367788888888887642 233456678899999998887643 3444566
Q ss_pred CCCCCEEEcccccCC
Q 035490 128 LFKLQKLSIRRNLLT 142 (142)
Q Consensus 128 ~~~L~~L~l~~n~is 142 (142)
+++|+.|++++|+++
T Consensus 512 l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CSSCCEEEEESCBCC
T ss_pred cCccCeeECcCCcCC
Confidence 788999999988764
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=7.9e-09 Score=71.45 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=50.0
Q ss_pred cCCCCCcEEEccCccccc--CCCccccCCCCCcEEEccCceeeecCchhhhCCC--CCCEEEcccccCC
Q 035490 78 GNLFSLETLMITDNSFSG--LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLF--KLQKLSIRRNLLT 142 (142)
Q Consensus 78 ~~l~~L~~l~l~~n~~~~--~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~--~L~~L~l~~n~is 142 (142)
..++.|+.|++++|.+++ .++..+..+++|+.|++++|++.+ + ..+..+. +|+.|++.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCc
Confidence 357899999999999986 334556688999999999999984 3 2344444 8999999999873
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.38 E-value=3.1e-07 Score=69.38 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcce----eeCChhhcCCCCCcEEEccCcccc
Q 035490 32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFH----GEIPREIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~l~l~~n~~~ 94 (142)
++|+.|++++|. +.+. ++..+..+++|++|++++|.++ +.++..+..+++|+.+++..+.+.
T Consensus 164 ~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 164 RKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 567777777776 5543 2222334556666666666654 122333344556666666555543
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.31 E-value=2.4e-07 Score=69.91 Aligned_cols=107 Identities=9% Similarity=0.157 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCCcceeecCcccc-CccccceeeeccC-cceee-CChhhcCCCCCcEEEccCcccccCCCcccc----CC
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADN-SFHGE-IPREIGNLFSLETLMITDNSFSGLMPTNLS----RC 104 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~----~l 104 (142)
++++.|++++|. +.+..+..+. .+++|++|++++| .++.. ++.....+++|+.+++++|.+++..+..+. .+
T Consensus 105 ~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 567888888887 7665555554 4677888888877 44422 333344677888888888876644333232 45
Q ss_pred CCCcEEEccCce--eee-cCchhhhCCCCCCEEEcccc
Q 035490 105 SNLIAFHANNNK--LAG-EIPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 105 ~~L~~l~l~~n~--~~~-~~p~~~~~~~~L~~L~l~~n 139 (142)
++|+.|+++.+. +.. .++..+..+++|+.|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 678888887765 221 12222344577777777765
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.20 E-value=1e-07 Score=71.99 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=53.8
Q ss_pred ccCccccceeeeccCcceeeCChhhcC-CCCCcEEEccCcccccCCCccc-cCCCCCcEEEccCceeeecCch-hhhCCC
Q 035490 53 VGNLSFLRHINIADNSFHGEIPREIGN-LFSLETLMITDNSFSGLMPTNL-SRCSNLIAFHANNNKLAGEIPE-EIGCLF 129 (142)
Q Consensus 53 l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~~~~~~p~-~~~~~~ 129 (142)
+..+++|+.|++++ .+++.....+.. +++|+.++++.|.+++.....+ ..+++|+.|++++|.+++.... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34456666777655 444333333433 6778888888777754322222 4567888888888887532222 334567
Q ss_pred CCCEEEcccccC
Q 035490 130 KLQKLSIRRNLL 141 (142)
Q Consensus 130 ~L~~L~l~~n~i 141 (142)
+|+.|++++|++
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 888888888765
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=5.1e-07 Score=58.60 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCC----CCCcEEEccCcc-cccCCCccccCCC
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNL----FSLETLMITDNS-FSGLMPTNLSRCS 105 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~p~~~~~l~ 105 (142)
.+|+.|+++++. ++...-..+..+++|++|++++|. +++..-..+..+ ++|+.|++++|. ++...-..+..++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 579999999998 887766778889999999999986 664433445554 369999998875 6644334566788
Q ss_pred CCcEEEccCce-ee
Q 035490 106 NLIAFHANNNK-LA 118 (142)
Q Consensus 106 ~L~~l~l~~n~-~~ 118 (142)
+|+.|++++.. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999998764 54
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=3.3e-07 Score=65.98 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCCCcEEEccCcccccCCCccc---cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490 80 LFSLETLMITDNSFSGLMPTNL---SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 80 l~~L~~l~l~~n~~~~~~p~~~---~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i 141 (142)
+++|+.|++.+|.+....+..+ ..++.|+.|+++.|.+... ++..+..+++|+.|+++.|.|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 3455555555554432111111 1345566666666665532 122223445666666666655
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=4.4e-06 Score=58.98 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=69.0
Q ss_pred ccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc-EEEccCceeeecCchhhhCCCCCCEE
Q 035490 56 LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI-AFHANNNKLAGEIPEEIGCLFKLQKL 134 (142)
Q Consensus 56 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~-~l~l~~n~~~~~~p~~~~~~~~L~~L 134 (142)
++.|+.++++.|.++...+..|..+.+|+.+++..| +...-+..|..+.+|+ .+++.. .++..-+..|..+.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998555567889999999999997 6645556799999999 999987 6652335678999999999
Q ss_pred EcccccC
Q 035490 135 SIRRNLL 141 (142)
Q Consensus 135 ~l~~n~i 141 (142)
++.+|.|
T Consensus 303 ~l~~n~i 309 (329)
T 3sb4_A 303 LATGDKI 309 (329)
T ss_dssp EECSSCC
T ss_pred EeCCCcc
Confidence 9988765
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=7.2e-07 Score=58.24 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=70.8
Q ss_pred cCccccCccccceeeeccC-cceee----CChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeee
Q 035490 49 LSPYVGNLSFLRHINIADN-SFHGE----IPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAG 119 (142)
Q Consensus 49 ~~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~ 119 (142)
+...+...+.|++|++++| .+... +...+...++|+.+++++|.+... +...+...+.|+.|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344566788999999999 87642 334566678999999999998743 23445556889999999999974
Q ss_pred c----CchhhhCCCCCCEEEc--ccccCC
Q 035490 120 E----IPEEIGCLFKLQKLSI--RRNLLT 142 (142)
Q Consensus 120 ~----~p~~~~~~~~L~~L~l--~~n~is 142 (142)
. +...+...+.|+.|++ ++|.|+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2 3455666788999999 888874
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.1e-06 Score=57.01 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=62.7
Q ss_pred cccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccCCCccccCC----CCCcEEEccCc-eeeecCchhhhCCCC
Q 035490 57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGLMPTNLSRC----SNLIAFHANNN-KLAGEIPEEIGCLFK 130 (142)
Q Consensus 57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~p~~~~~l----~~L~~l~l~~n-~~~~~~p~~~~~~~~ 130 (142)
..|+.||++++.++..--..+..+++|+.|+++.+. ++...-..+..+ ++|+.|+++++ +++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999886655667889999999999986 654322334443 37999999986 477432345677899
Q ss_pred CCEEEcccc
Q 035490 131 LQKLSIRRN 139 (142)
Q Consensus 131 L~~L~l~~n 139 (142)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 999999886
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.5e-05 Score=57.41 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc--CCCCCcEEEccC--cccccC-----CCccc-
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG--NLFSLETLMITD--NSFSGL-----MPTNL- 101 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~l~l~~--n~~~~~-----~p~~~- 101 (142)
++|+.|.++++..+ .++. + .+++|++|++..+.+.......+. .+++|+.|++.. +...+. +...+
T Consensus 172 P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 67888888776312 1232 3 367888888888877644333443 688999998853 221111 11122
Q ss_pred -cCCCCCcEEEccCceeeecCchhhh---CCCCCCEEEcccccCC
Q 035490 102 -SRCSNLIAFHANNNKLAGEIPEEIG---CLFKLQKLSIRRNLLT 142 (142)
Q Consensus 102 -~~l~~L~~l~l~~n~~~~~~p~~~~---~~~~L~~L~l~~n~is 142 (142)
..+++|+.|.+..|.+....+..+. .+++|+.|+++.|.|.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 2468999999998888643333332 4788999999998763
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.70 E-value=0.00019 Score=52.30 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=46.0
Q ss_pred CccccCccccceeeeccCcce-----eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchh
Q 035490 50 SPYVGNLSFLRHINIADNSFH-----GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEE 124 (142)
Q Consensus 50 ~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~ 124 (142)
...|..+.+|+.+++..+.+. ...+..|..+.+|+.+.+.. .+...-...|..+.+|+.+.+..+ ++..-...
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 444555666666666555443 12234455566666666653 344333345666666666666433 33122334
Q ss_pred hhCCCCCCEEEccccc
Q 035490 125 IGCLFKLQKLSIRRNL 140 (142)
Q Consensus 125 ~~~~~~L~~L~l~~n~ 140 (142)
|..+ +|+.+++.+|.
T Consensus 342 F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSSS-CCCEEEECCSS
T ss_pred CCCC-CCCEEEEcCCC
Confidence 5555 66666666554
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.40 E-value=0.00058 Score=49.67 Aligned_cols=105 Identities=8% Similarity=0.022 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCCcce-----eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCC
Q 035490 32 QKVAKLDLRKYQSLR-----GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN 106 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~ 106 (142)
.+|+.+.+.++. +. ......|..+.+|+.+++.. .+...-...|..+.+|+.+.+..+ ++..-...|..+ +
T Consensus 271 ~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 271 PELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G 346 (401)
T ss_dssp TTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred CCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence 668888887765 43 34456788899999999984 466444567888899999999665 554455778888 9
Q ss_pred CcEEEccCceeeecCchhhhCCC-CCCEEEccccc
Q 035490 107 LIAFHANNNKLAGEIPEEIGCLF-KLQKLSIRRNL 140 (142)
Q Consensus 107 L~~l~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~ 140 (142)
|+.+++..|.+.......|..++ .++.+.+..+.
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 99999999887733344566663 67788776653
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=6.5e-05 Score=49.54 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCC-Ccceee----cCccccCccccceeeeccCcceeeC----ChhhcCCCCCcEEEccCcccccC----C
Q 035490 31 HQKVAKLDLRKY-QSLRGF----LSPYVGNLSFLRHINIADNSFHGEI----PREIGNLFSLETLMITDNSFSGL----M 97 (142)
Q Consensus 31 ~~~l~~L~l~~n-~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~ 97 (142)
...++.|+++++ . +... +-..+..-..|++|++++|.+.+.. ...+..-.+|+.|+++.|.|+.. +
T Consensus 40 n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 377999999986 5 6532 2344556678999999999988532 33444567899999999999743 2
Q ss_pred CccccCCCCCcEEEccCc---eeee----cCchhhhCCCCCCEEEccccc
Q 035490 98 PTNLSRCSNLIAFHANNN---KLAG----EIPEEIGCLFKLQKLSIRRNL 140 (142)
Q Consensus 98 p~~~~~l~~L~~l~l~~n---~~~~----~~p~~~~~~~~L~~L~l~~n~ 140 (142)
.+.+..-..|+.|+++++ .+.. .+.+.+..-+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 234555567999999754 3432 234455566789999988764
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00071 Score=41.52 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred ceeeeccCcce-eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeee
Q 035490 60 RHINIADNSFH-GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAG 119 (142)
Q Consensus 60 ~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~ 119 (142)
..++.+++.++ ..+|..+ ..+++.|++++|.++..-+..|..+++|+.++|.+|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 35677777765 2455432 3468899999999985444567788889999999988853
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.91 E-value=0.00061 Score=44.88 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=63.0
Q ss_pred ccCccccceeeeccC-ccee----eCChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeeec---
Q 035490 53 VGNLSFLRHINIADN-SFHG----EIPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAGE--- 120 (142)
Q Consensus 53 l~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~~--- 120 (142)
+..-+.|++|++++| .+.. .+...+..-.+|+.|+++.|.+... +.+.+..-+.|+.|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344577999999986 6653 2345566678899999999999843 233454557899999999999732
Q ss_pred -CchhhhCCCCCCEEEcccc
Q 035490 121 -IPEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 121 -~p~~~~~~~~L~~L~l~~n 139 (142)
+.+.+..-..|+.|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2344555567999999865
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.66 E-value=0.019 Score=41.32 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490 33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112 (142)
Q Consensus 33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 112 (142)
.++.+.+.++. .......+.....|+.+.+. +.+...-...|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+
T Consensus 266 ~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 266 YLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 34445444332 22223345556667776664 3344233345666777888877654 33233456777778888877
Q ss_pred cCceeeecC-chhhhCCCCCCEEEcccc
Q 035490 113 NNNKLAGEI-PEEIGCLFKLQKLSIRRN 139 (142)
Q Consensus 113 ~~n~~~~~~-p~~~~~~~~L~~L~l~~n 139 (142)
..+ ++ .+ ...|.++.+|+.+++.++
T Consensus 342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 342 PSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred Ccc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 543 44 33 345777777887777665
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0011 Score=40.57 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=33.8
Q ss_pred EEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490 36 KLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS 94 (142)
Q Consensus 36 ~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~ 94 (142)
.++.+++. ++ ..+|..+ ...+++|++++|.++..-+..+..++.|+.+++.+|.+.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 55666665 44 2344332 234777788888777333345566777777777777653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.47 E-value=0.017 Score=41.24 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=39.8
Q ss_pred ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecC-chhhhCCCCC
Q 035490 53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI-PEEIGCLFKL 131 (142)
Q Consensus 53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~-p~~~~~~~~L 131 (142)
+.....|+.+.+..+ +.......+..+.+|+.+.+..+.+...-...|..+.+|+.+.+..+ ++ .+ ...|.++.+|
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L 335 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKAL 335 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCC
Confidence 344445555554332 22122234455566666666655554333345666666666666433 33 22 2345555555
Q ss_pred CEEEc
Q 035490 132 QKLSI 136 (142)
Q Consensus 132 ~~L~l 136 (142)
+.+.+
T Consensus 336 ~~i~i 340 (379)
T 4h09_A 336 STISY 340 (379)
T ss_dssp CCCCC
T ss_pred CEEEE
Confidence 55544
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.22 E-value=0.017 Score=41.56 Aligned_cols=103 Identities=13% Similarity=0.201 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490 32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111 (142)
Q Consensus 32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 111 (142)
..|+.+.+... +.......|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..-...|..+.+|+.++
T Consensus 288 ~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 288 PALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred cccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 56788877643 55455566778899999998754 55344567888899999999764 5534446799999999999
Q ss_pred ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141 (142)
Q Consensus 112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i 141 (142)
+..+... ...+.....|+.+.+..+.+
T Consensus 364 ~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 364 YSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ESSCHHH---HHTCBCCCCC----------
T ss_pred ECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9876543 13455567788887766543
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.14 E-value=0.016 Score=41.75 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=49.1
Q ss_pred cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490 52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131 (142)
Q Consensus 52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L 131 (142)
.+.....|+.+.+..+ +...-...+..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++..-...|..+.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3455666777766543 44233445666677777777543 44233456777777777777654 441223456667777
Q ss_pred CEEEccc
Q 035490 132 QKLSIRR 138 (142)
Q Consensus 132 ~~L~l~~ 138 (142)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7777654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.66 E-value=0.064 Score=38.53 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=30.5
Q ss_pred ccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490 51 PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113 (142)
Q Consensus 51 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~ 113 (142)
..|..+.+|+.+++..+ ++..-...+..+.+|+.+.+..+ +...-...|..+.+|+.+++.
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 34455555666655432 33222344555556666665544 332333455556666666554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.40 E-value=0.15 Score=36.30 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=58.6
Q ss_pred CccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCC
Q 035490 50 SPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLF 129 (142)
Q Consensus 50 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~ 129 (142)
...+.....|+.+.+..+ ++..-...+.....|+.+.+..+ +...-...|..+.+|+.+.+..+.++..-...|..+.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 344556667777777554 44233445666778888887654 3323345688889999999987777622245688888
Q ss_pred CCCEEEcccc
Q 035490 130 KLQKLSIRRN 139 (142)
Q Consensus 130 ~L~~L~l~~n 139 (142)
+|+.+.+..+
T Consensus 311 ~L~~i~lp~~ 320 (379)
T 4h09_A 311 KLSSVTLPTA 320 (379)
T ss_dssp TCCEEECCTT
T ss_pred CCCEEEcCcc
Confidence 9999888643
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=41.45 E-value=5.9 Score=15.64 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=6.6
Q ss_pred CCceeeeeE
Q 035490 18 NLGQWTGVT 26 (142)
Q Consensus 18 ~~~~~~g~~ 26 (142)
.-|+|+|+.
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 478998854
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.96 E-value=50 Score=18.63 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=18.7
Q ss_pred ccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccC
Q 035490 51 PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD 90 (142)
Q Consensus 51 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~ 90 (142)
..|.+...|+.+.+-.+ ++..-...|....+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44555556666655433 2212233445555555555544
Done!