BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035491
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8YFU1|HIUH_BRUME 5-hydroxyisourate hydrolase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=BMEI1429 PE=3
SV=2
Length = 118
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 212 IAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHI 247
+AEY + R AE+++ P DLI RF D+D H+
Sbjct: 68 VAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHV 103
>sp|Q8G228|HIUH_BRUSU 5-hydroxyisourate hydrolase OS=Brucella suis biovar 1 (strain 1330)
GN=BR0508 PE=3 SV=1
Length = 118
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 212 IAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHI 247
+AEY + R AE+++ P DLI RF D+D H+
Sbjct: 68 VAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHV 103
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1
PE=1 SV=1
Length = 827
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 4 LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFT-IKEIWEKFMMSWNVLL 62
+ L ++D L++ + + PN +H WH V+ K + F+ + + E F++ +N +
Sbjct: 337 VILTDQDKFLMSAVSELLPNTRHCFALWH----VLEKIPEYFSHVMKRHENFLLKFNKCI 392
Query: 63 LSS-SEDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNK 121
S ++DEF R + F + E++ WL ++++ +V + + G T+ +
Sbjct: 393 FRSWTDDEFDMRWWKMVSQFGL--ENDEWL--LWLHEHRQKWVPTFMSDVFLAGMSTSQR 448
Query: 122 VESLHSRLKK 131
ES++S K
Sbjct: 449 SESVNSFFDK 458
>sp|Q7PC71|CSLH2_ORYSI Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica
GN=CSLH2 PE=2 SV=1
Length = 762
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 164 FKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEY 215
F L FI +TAL M+ N + + V AC + G+PCA I E+
Sbjct: 670 FDSLPVFIPVTALAML-------NIVAVTVGACRVAFGTAEGVPCAPGIGEF 714
>sp|Q7XUT9|CSLH2_ORYSJ Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica
GN=CSLH2 PE=2 SV=3
Length = 762
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 164 FKELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEY 215
F L FI +TAL M+ N + + V AC + G+PCA I E+
Sbjct: 670 FDSLPVFIPVTALAML-------NIVAVTVGACRVAFGTAEGVPCAPGIGEF 714
>sp|P35883|TRA0_MYCSM Transposase for insertion sequence element IS6120 OS=Mycobacterium
smegmatis PE=3 SV=1
Length = 323
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 4 LTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKK------LFTIKEIWEKFMMS 57
L + + L + VFP K C +H + NV+A K L IKEI+
Sbjct: 127 LAIGDGALGFWKAVREVFPATKEQRCWFHKQANVLAALPKSAHPSALAAIKEIYN----- 181
Query: 58 WNVLLLSSSEDEFITRLNALQQDFIS-YPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGN 116
+ D+ + A + DF + YP+ + +T LD E + Y H+ +
Sbjct: 182 ------AEDIDKAQIAVKAFEADFGAKYPKAVAKITDD-LDVLLEFY----KYPAEHWIH 230
Query: 117 L-TTNKVES 124
L TTN +ES
Sbjct: 231 LRTTNPIES 239
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 8 NRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLF 45
+ D + I VFP A+H C+WHI K K +F
Sbjct: 365 DHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSHVF 402
>sp|Q2YBJ8|KHSE_NITMU Homoserine kinase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=thrB PE=3 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 204 HGLPCAHEIAEYKKKRKAEMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLI 263
HGLPC +A+ K E++ +P + + H + +AN + L
Sbjct: 74 HGLPCPSPVADLANKFLGELNGKPASIVTCLPGKSQESPTATHCAEVGELLANMHLSGLS 133
Query: 264 EPEAKKNTRGRPNSKANA 281
PE +N RG KA A
Sbjct: 134 YPEKMENLRGPRWWKAAA 151
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 107 WTYKIMHFGNLTTNKVESLHSRLKKELGTSQELLHTNIKVSFEKSLTIVQHPFKLAEFKE 166
WT K+ + T K +S +R++++L + E T+ + K EFK
Sbjct: 1255 WTVKLNEMNSTATEKDDS--ARMREQLNHANE--------------TMAELKRKFNEFKR 1298
Query: 167 LRGFIS-----ITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAEYKKKRKA 221
+GF IT L V E ++ GID S CG + L + A+ K K A
Sbjct: 1299 PKGFEEKLEKVITTLSNV--EMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKDLA 1356
Query: 222 EMSYRPIFDLIAKRFNENDDDAKLHILQKLTEIANPQSTSLIE 264
E + + D + D++ LQKL + A +S L E
Sbjct: 1357 ENREQLVKDRVL------DEETSKETLQKL-QYAKTKSKELYE 1392
>sp|Q5WJC1|UXAC_BACSK Uronate isomerase OS=Bacillus clausii (strain KSM-K16) GN=uxaC PE=3
SV=1
Length = 472
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 32 HIKKNVIAKCKKLFTIKEIW-EKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEY 90
H+ IA+ ++ I EIW W + E+ FIT ++ F+ + +T+ Y
Sbjct: 39 HVPPQEIAENRQFNNISEIWLHGDHYKWRAMRAVGVEETFITGDGDDKEKFLKWAETVPY 98
Query: 91 VTSTWLDKYKENFVSAWTYKIM--HFGN---LTTNKVESLHSRLKKELGTSQELLHTNIK 145
N + WT+ + +FG L++ E++ S K++L + + IK
Sbjct: 99 TMG--------NPLYHWTHLELKRYFGIDELLSSETAEAIWSATKEQLAAPERSVQGIIK 150
Query: 146 VSFEKSLTIVQHP 158
S K + P
Sbjct: 151 ESNVKVICTTDDP 163
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana
GN=FHY3 PE=1 SV=1
Length = 839
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 10 DLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDE 69
D+ + + + +FPN +H L WH+ ++ + L + + + FM + + S +DE
Sbjct: 352 DVVMNSIVPEIFPNTRHCLFLWHV---LMKVSENLGQVVKQHDNFMPKFEKCIYKSGKDE 408
Query: 70 FITR 73
R
Sbjct: 409 DFAR 412
>sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1
Length = 2380
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 70/201 (34%), Gaps = 59/201 (29%)
Query: 7 NNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIKEIWEKFMMSWNVLLLSSS 66
NN L ++++ N +HL W + + KE W +++ ++V LL S
Sbjct: 1127 NNTSTPLDIGVKKLKANEQHLKNAWETSQR---------STKEDWGEWIRRFSVELLRES 1177
Query: 67 EDEFITRLNALQQDFISYPQTIEYVTSTWLDKYKENFVSAWTYKIMHFGNLTTNKVESLH 126
+ +L QD+ +P E + FVS WT LH
Sbjct: 1178 PSPALRSCLSLAQDY--HPLVKEL--------FNAGFVSCWT---------------ELH 1212
Query: 127 SRLKKELGTSQE--LLHTNIKVSFEKSLTIVQHPFKLAEFKELRGFISITALQMVLTESK 184
+ ++EL S E LL NI I+Q LAEF EL
Sbjct: 1213 EQFQEELVRSLETALLSPNIPPE------ILQTLLNLAEFMEL----------------- 1249
Query: 185 HANSIGIDVSACGCTIRSTHG 205
H + ID+ G H
Sbjct: 1250 HEKPLPIDIRTLGALAEKCHA 1270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,686,232
Number of Sequences: 539616
Number of extensions: 3875440
Number of successful extensions: 10440
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10436
Number of HSP's gapped (non-prelim): 19
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)