Query 035491
Match_columns 292
No_of_seqs 229 out of 1057
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ezd_A High mobility group pro 89.5 0.27 9.3E-06 25.6 2.3 10 268-277 4-13 (26)
2 1co4_A AMT1, protein (activato 50.9 4.3 0.00015 24.2 0.5 12 265-276 29-40 (42)
3 2qsr_A Transcription-repair co 49.2 23 0.00078 28.0 4.8 39 55-93 31-69 (173)
4 3lk2_T Carmil homolog, leucine 42.2 11 0.00036 23.4 1.3 14 270-283 25-39 (52)
5 2ld7_B Paired amphipathic heli 29.4 46 0.0016 22.3 3.1 20 40-59 17-36 (75)
6 2nrr_A Uvrabc system protein C 28.4 32 0.0011 26.8 2.4 23 1-23 79-101 (159)
7 3c65_A Uvrabc system protein C 21.1 50 0.0017 27.3 2.4 22 1-22 82-103 (226)
8 2fcj_A Small toprim domain pro 21.0 58 0.002 24.0 2.5 26 3-28 53-81 (119)
9 2nrt_A Uvrabc system protein C 20.6 53 0.0018 27.0 2.4 23 1-23 84-106 (220)
10 1x9b_A Hypothetical membrane p 18.2 1.8E+02 0.0061 17.7 3.9 24 57-80 8-31 (53)
No 1
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=89.55 E-value=0.27 Score=25.64 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=8.6
Q ss_pred cCCCCCCCCC
Q 035491 268 KKNTRGRPNS 277 (292)
Q Consensus 268 k~~~kGrPk~ 277 (292)
.++++|||||
T Consensus 4 pKrpRgRpkG 13 (26)
T 2ezd_A 4 PKRPRGRPKG 13 (26)
T ss_dssp CCCCSSCCTT
T ss_pred CcCCCCCcCc
Confidence 3788999999
No 2
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=50.89 E-value=4.3 Score=24.17 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=10.7
Q ss_pred CcccCCCCCCCC
Q 035491 265 PEAKKNTRGRPN 276 (292)
Q Consensus 265 pp~k~~~kGrPk 276 (292)
|...++.||||.
T Consensus 29 pL~~ir~kGRP~ 40 (42)
T 1co4_A 29 PLKILKPRGRPP 40 (42)
T ss_dssp CEEEECSCCCCS
T ss_pred cceecCCCCCCC
Confidence 678899999997
No 3
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=49.21 E-value=23 Score=27.97 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCchhhhHHHhh
Q 035491 55 MMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTS 93 (292)
Q Consensus 55 ~~~~~~l~~a~t~~ef~~~~~~l~~~~~~~p~~~~Y~~~ 93 (292)
+..++.+..+.|+++.++..++|.+.|+..|..++.+-.
T Consensus 31 L~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~ 69 (173)
T 2qsr_A 31 IEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLE 69 (173)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHH
Confidence 456778999999999999999999999998877776644
No 4
>3lk2_T Carmil homolog, leucine-rich repeat-containing protein 16A; CAPZ, actin filaments, uncapping, actin-filament REG protein-protein complex; 2.20A {Gallus gallus}
Probab=42.16 E-value=11 Score=23.35 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=9.3
Q ss_pred CCCCCCCC-CCCCCc
Q 035491 270 NTRGRPNS-KANAST 283 (292)
Q Consensus 270 ~~kGrPk~-~~~~st 283 (292)
.||||||. +.+.++
T Consensus 25 ~TK~RPk~~kk~~Ps 39 (52)
T 3lk2_T 25 FTKLRPKRNKKQQPT 39 (52)
T ss_dssp GGGGSCCCCCSSCCS
T ss_pred hhccCCCcccccCCC
Confidence 49999998 433333
No 5
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=29.43 E-value=46 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=12.3
Q ss_pred HhhhcccchHHHHHHHHHHH
Q 035491 40 KCKKLFTIKEIWEKFMMSWN 59 (292)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ 59 (292)
++++.+++++.+.+|++.++
T Consensus 17 kVK~~l~~~~~Y~eFLk~ln 36 (75)
T 2ld7_B 17 KVRKALRSAEAYENFLRCLV 36 (75)
T ss_dssp HHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 34444555677777777665
No 6
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=28.41 E-value=32 Score=26.80 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.7
Q ss_pred CCcEEEecccHHHHHHHHHhCcc
Q 035491 1 MHFLTLNNRDLALVNTIERVFPN 23 (292)
Q Consensus 1 ~P~viitD~~~al~~Ai~~vfP~ 23 (292)
+|..|+.|+..+..+|+.+|+-+
T Consensus 79 ~PDLilIDGGkgQl~aA~~vl~e 101 (159)
T 2nrr_A 79 LPNLLFVDGGIGQVNAAIEALKE 101 (159)
T ss_dssp CCSEEEESSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999999999998844
No 7
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.07 E-value=50 Score=27.26 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=20.3
Q ss_pred CCcEEEecccHHHHHHHHHhCc
Q 035491 1 MHFLTLNNRDLALVNTIERVFP 22 (292)
Q Consensus 1 ~P~viitD~~~al~~Ai~~vfP 22 (292)
+|..|+.|+-.+..+|+.+|+-
T Consensus 82 ~PDLiliDGGkgQl~~a~~vl~ 103 (226)
T 3c65_A 82 LPDLIIIDGGKGHLSAVRDVLE 103 (226)
T ss_dssp CCSEEEESSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHH
Confidence 5999999999999999999983
No 8
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=20.97 E-value=58 Score=24.00 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=21.5
Q ss_pred cEEEecccH---HHHHHHHHhCccccchh
Q 035491 3 FLTLNNRDL---ALVNTIERVFPNAKHLL 28 (292)
Q Consensus 3 ~viitD~~~---al~~Ai~~vfP~a~~~l 28 (292)
.+|+||.|. -+++-|.+.||++.|.+
T Consensus 53 VIi~TD~D~~GekIRk~i~~~lp~~~haf 81 (119)
T 2fcj_A 53 VYLLADADEAGEKLRRQFRRMFPEAEHLY 81 (119)
T ss_dssp EEEECCSSHHHHHHHHHHHHHCTTSEEEC
T ss_pred EEEEECCCccHHHHHHHHHHHCCCCcEEe
Confidence 367899996 48888999999998865
No 9
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.62 E-value=53 Score=27.04 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.7
Q ss_pred CCcEEEecccHHHHHHHHHhCcc
Q 035491 1 MHFLTLNNRDLALVNTIERVFPN 23 (292)
Q Consensus 1 ~P~viitD~~~al~~Ai~~vfP~ 23 (292)
+|..|+.|+-.+..+|+.+|+-+
T Consensus 84 ~PDLiliDGGkgQl~~a~~vl~~ 106 (220)
T 2nrt_A 84 LPNLLFVDGGIGQVNAAIEALKE 106 (220)
T ss_dssp CCSEEEESSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999999999998843
No 10
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=18.16 E-value=1.8e+02 Score=17.71 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Q 035491 57 SWNVLLLSSSEDEFITRLNALQQD 80 (292)
Q Consensus 57 ~~~~l~~a~t~~ef~~~~~~l~~~ 80 (292)
.|..+..+++...|...+++|...
T Consensus 8 ~Fe~~InS~SK~~Fv~nL~ELE~i 31 (53)
T 1x9b_A 8 KFESMINSPSKSVFVRNLNELEAL 31 (53)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHhHHHHHHH
Confidence 466788899999999999888654
Done!