Query 035491
Match_columns 292
No_of_seqs 229 out of 1057
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 04:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035491.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035491hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1co4a_ g.47.1.1 (A:) Zinc dom 61.4 1.1 7.8E-05 25.2 0.5 12 265-276 29-40 (42)
2 d2eyqa6 d.315.1.1 (A:990-1147) 41.3 16 0.0012 26.3 4.6 39 55-93 35-73 (158)
3 d1x9ba_ a.10.2.1 (A:) Hypothet 25.0 51 0.0037 18.5 3.8 24 57-80 8-31 (53)
4 d2hyec2 a.118.17.1 (C:55-401) 13.9 1.1E+02 0.008 24.2 5.2 96 2-97 1-108 (347)
5 g1avo.1 a.24.8.1 (A:,B:) Prote 12.4 1.1E+02 0.0081 22.7 4.3 76 12-95 116-192 (200)
6 d1no1a_ a.179.1.1 (A:) Repliso 11.7 1.4E+02 0.01 17.0 6.2 29 49-77 24-52 (67)
7 d1yd9a1 c.50.1.2 (A:6-193) His 11.1 41 0.003 24.6 1.3 49 166-214 44-92 (188)
8 d1qkka_ c.23.1.1 (A:) Transcri 10.4 66 0.0048 22.0 2.3 21 2-22 1-21 (140)
9 d1yioa2 c.23.1.1 (A:3-130) Res 10.2 69 0.005 21.4 2.3 23 2-24 3-25 (128)
10 d2fcja1 c.136.1.1 (A:1-114) Hy 10.0 79 0.0058 20.9 2.5 26 3-28 53-81 (114)
No 1
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=61.37 E-value=1.1 Score=25.22 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=10.7
Q ss_pred CcccCCCCCCCC
Q 035491 265 PEAKKNTRGRPN 276 (292)
Q Consensus 265 pp~k~~~kGrPk 276 (292)
|..++++||||.
T Consensus 29 pL~~v~~kGRP~ 40 (42)
T d1co4a_ 29 PLKILKPRGRPP 40 (42)
T ss_dssp CEEEECSCCCCS
T ss_pred ccEeecCCCCCC
Confidence 678899999997
No 2
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.34 E-value=16 Score=26.27 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCchhhhHHHhh
Q 035491 55 MMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEYVTS 93 (292)
Q Consensus 55 ~~~~~~l~~a~t~~ef~~~~~~l~~~~~~~p~~~~Y~~~ 93 (292)
+..++.+..+.|.++.+...++|.+.|+..|..+..+-+
T Consensus 35 l~~Ykrla~~~~~~el~~i~~El~DRFG~lP~ev~nLl~ 73 (158)
T d2eyqa6 35 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 73 (158)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 456778999999999999999999999988876665533
No 3
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.96 E-value=51 Score=18.47 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Q 035491 57 SWNVLLLSSSEDEFITRLNALQQD 80 (292)
Q Consensus 57 ~~~~l~~a~t~~ef~~~~~~l~~~ 80 (292)
.|..+..+++..+|...+++|.+.
T Consensus 8 kFEs~INS~SK~~FV~NL~ELE~l 31 (53)
T d1x9ba_ 8 KFESMINSPSKSVFVRNLNELEAL 31 (53)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHhHHHHHHH
Confidence 355678899999999999888664
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.88 E-value=1.1e+02 Score=24.24 Aligned_cols=96 Identities=8% Similarity=-0.052 Sum_probs=55.2
Q ss_pred CcEEEecccHHHHHHHHHhCccccchhHHHHHHHHHHHHhhhcccch--HHHHHHHH-HHHH----Hh-cCCC----HHH
Q 035491 2 HFLTLNNRDLALVNTIERVFPNAKHLLCRWHIKKNVIAKCKKLFTIK--EIWEKFMM-SWNV----LL-LSSS----EDE 69 (292)
Q Consensus 2 P~viitD~~~al~~Ai~~vfP~a~~~lC~~Hi~~n~~~~~~~~~~~~--~~~~~~~~-~~~~----l~-~a~t----~~e 69 (292)
|..++.+.=..|..||..+|-+....++.=.+.+.+..-|....+.. +..+.++. .... +. .+.+ -..
T Consensus 1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 80 (347)
T d2hyec2 1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKK 80 (347)
T ss_dssp SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34444455567899999999988888898888888776554332221 11222221 1111 11 2222 244
Q ss_pred HHHHHHHHHhhccCchhhhHHHhhhhhh
Q 035491 70 FITRLNALQQDFISYPQTIEYVTSTWLD 97 (292)
Q Consensus 70 f~~~~~~l~~~~~~~p~~~~Y~~~~Wl~ 97 (292)
|...|..+......-..++.|++..|+.
T Consensus 81 ~~~~W~~~~~~~~~l~~if~YLdr~yv~ 108 (347)
T d2hyec2 81 INTCWQDHCRQMIMIRSIFLFLDRTYVL 108 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 5566666654433335678899888874
No 5
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.35 E-value=1.1e+02 Score=22.70 Aligned_cols=76 Identities=9% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHHHHHHHhCccccchhHHHHHHHH-HHHHhhhcccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCchhhhHH
Q 035491 12 ALVNTIERVFPNAKHLLCRWHIKKN-VIAKCKKLFTIKEIWEKFMMSWNVLLLSSSEDEFITRLNALQQDFISYPQTIEY 90 (292)
Q Consensus 12 al~~Ai~~vfP~a~~~lC~~Hi~~n-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~t~~ef~~~~~~l~~~~~~~p~~~~Y 90 (292)
+++.+++..-....-..+.+|..|. +.+++.+. .. ..+|...+.-.++.+|-..+..+.+..+.|....++
T Consensus 116 ~~l~~ve~~a~~~~~~i~kY~~~Rak~vsK~~Ky-P~-------v~DYr~~v~e~Dek~y~~lr~~v~eiRn~Y~~l~D~ 187 (200)
T g1avo.1 116 ELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQ-PH-------VGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDI 187 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-------BTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666443 22333221 11 123444555556667766666665555556677788
Q ss_pred Hhhhh
Q 035491 91 VTSTW 95 (292)
Q Consensus 91 ~~~~W 95 (292)
+.+||
T Consensus 188 i~KN~ 192 (200)
T g1avo.1 188 ILKNF 192 (200)
T ss_dssp HHHTH
T ss_pred HHHhH
Confidence 88877
No 6
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=11.70 E-value=1.4e+02 Score=16.96 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035491 49 EIWEKFMMSWNVLLLSSSEDEFITRLNAL 77 (292)
Q Consensus 49 ~~~~~~~~~~~~l~~a~t~~ef~~~~~~l 77 (292)
++.+.-.++|+.+......+|....+...
T Consensus 24 ddlkgtvkawhrvlaeyeleeimnnltdy 52 (67)
T d1no1a_ 24 DDLKGTVKAWHRVLAEYELEEIMNNLTDY 52 (67)
T ss_dssp TTHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556678898877666656655554443
No 7
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.06 E-value=41 Score=24.63 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=29.2
Q ss_pred hhhccccHHHHHHHHHHHHHhhhCCCCCCCccceeccccccchhhHhHH
Q 035491 166 ELRGFISITALQMVLTESKHANSIGIDVSACGCTIRSTHGLPCAHEIAE 214 (292)
Q Consensus 166 ~l~g~iS~~al~~~~~q~~~~~~~~~d~~~Csc~~~~~~GiPC~H~l~~ 214 (292)
.+.+.|...|-..+..+-.............+...+...++||.|+|.+
T Consensus 44 gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~~~~L~~k~IiH~ 92 (188)
T d1yd9a1 44 EVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHC 92 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEECTTSSSSEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecccCCCCceEEeee
Confidence 4556666777666665543322111122344566778889999998854
No 8
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=10.45 E-value=66 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.2
Q ss_pred CcEEEecccHHHHHHHHHhCc
Q 035491 2 HFLTLNNRDLALVNTIERVFP 22 (292)
Q Consensus 2 P~viitD~~~al~~Ai~~vfP 22 (292)
|++.|.|.|..+...++..+-
T Consensus 1 P~ILiVDDd~~~~~~l~~~L~ 21 (140)
T d1qkka_ 1 PSVFLIDDDRDLRKAMQQTLE 21 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHH
Confidence 899999999999988877663
No 9
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=10.24 E-value=69 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=19.5
Q ss_pred CcEEEecccHHHHHHHHHhCccc
Q 035491 2 HFLTLNNRDLALVNTIERVFPNA 24 (292)
Q Consensus 2 P~viitD~~~al~~Ai~~vfP~a 24 (292)
|++.|.|.|..+...+...+-..
T Consensus 3 P~ILiVDDd~~~~~~l~~~L~~~ 25 (128)
T d1yioa2 3 PTVFVVDDDMSVREGLRNLLRSA 25 (128)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHc
Confidence 88999999999999888777544
No 10
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.04 E-value=79 Score=20.93 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=19.1
Q ss_pred cEEEecccHH---HHHHHHHhCccccchh
Q 035491 3 FLTLNNRDLA---LVNTIERVFPNAKHLL 28 (292)
Q Consensus 3 ~viitD~~~a---l~~Ai~~vfP~a~~~l 28 (292)
.+|++|.|.+ +...|.+.||++.|.+
T Consensus 53 Iii~~D~D~aG~~~a~~l~~~l~~~~~~~ 81 (114)
T d2fcja1 53 VYLLADADEAGEKLRRQFRRMFPEAEHLY 81 (114)
T ss_dssp EEEECCSSHHHHHHHHHHHHHCTTSEEEC
T ss_pred EEEEeCCChHHHHHHHHHHHHCCCCcEEE
Confidence 4789999974 4444778899988754
Done!