Query 035493
Match_columns 305
No_of_seqs 382 out of 1289
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 04:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.7E-28 1.3E-32 214.2 27.1 271 9-286 7-365 (491)
2 3o7q_A L-fucose-proton symport 99.9 1.3E-24 4.3E-29 188.8 23.4 254 12-281 24-343 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.6E-24 5.3E-29 188.8 11.4 257 10-274 24-331 (451)
4 2gfp_A EMRD, multidrug resista 99.9 3.3E-21 1.1E-25 164.0 11.6 230 18-262 4-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 6.7E-19 2.3E-23 155.0 17.0 113 44-156 49-192 (491)
6 2xut_A Proton/peptide symporte 99.5 8.1E-14 2.8E-18 123.6 10.7 120 38-157 37-195 (524)
7 2cfq_A Lactose permease; trans 99.4 2.1E-13 7E-18 117.6 5.2 238 32-279 25-305 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.6 2.6E-07 9E-12 79.9 10.9 129 32-160 270-433 (451)
9 4aps_A DI-OR tripeptide H+ sym 98.4 7.5E-07 2.6E-11 78.0 7.9 103 60-162 359-474 (491)
10 4gc0_A D-xylose-proton symport 98.3 1.4E-05 4.9E-10 69.8 13.3 71 95-165 387-468 (491)
11 2cfq_A Lactose permease; trans 98.2 3E-06 1E-10 72.7 8.6 108 57-164 291-404 (417)
12 3o7q_A L-fucose-proton symport 98.2 2.3E-05 7.7E-10 67.4 13.1 124 34-160 278-432 (438)
13 2xut_A Proton/peptide symporte 98.2 1.3E-05 4.4E-10 70.7 11.0 99 59-157 377-499 (524)
14 2gfp_A EMRD, multidrug resista 97.8 9.1E-06 3.1E-10 68.4 2.9 70 76-146 289-362 (375)
15 2g9p_A Antimicrobial peptide l 37.2 11 0.00037 16.7 0.6 13 253-265 3-15 (26)
16 2fyu_K Ubiquinol-cytochrome C 28.8 85 0.0029 17.8 3.7 38 105-142 4-41 (56)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=3.7e-28 Score=214.16 Aligned_cols=271 Identities=23% Similarity=0.400 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcC--------CchhHHHHHH------------------------
Q 035493 9 IPAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGL--------SLIEYSVFGS------------------------ 56 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s------------------------ 56 (305)
++..+.+.++++++.+.+|||.+.++..+|.++++++. ++++.|++.+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45667777888899999999999999999999888743 2334455544
Q ss_pred HHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH
Q 035493 57 AMWLSDLFCIFGWLAIA------------------FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA 118 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~ 118 (305)
++.++.+++.+++++++ +++|++.++++|+++|+|.|+..+..+.+++|+.|+++|++..+.
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 88899999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------hhhHHHHHHhHHHHHHHHHHhhcccCChHHHHH-----HHHHHHHHhhCC
Q 035493 119 NQLLVASGLSVIYLVGTV------------VSWRALALIAAVPCLLQVVGLFFIPESPRWLKK-----SLKLLYSALRGK 181 (305)
Q Consensus 119 ~~~~~~~G~~~~~~i~~~------------~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~-----~~~~~~~~~~~~ 181 (305)
.+.+...|..+++.++.. .+||+.+....++.++..+..++.||||+|+.. ++++.+++..++
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999888877622 269999999998888888888999999999866 222222222211
Q ss_pred Ccchhh------hH---------------HHHHHHHHHHHHhhhhchhHHHHhHHHHHHHhcccccccCCcchhHHHHHH
Q 035493 182 TADISM------ES---------------ADIRVGVGLMVMQPLVGSAAIACYASYIFAAAELMNIQGNDSMNLLFVTDL 240 (305)
Q Consensus 182 ~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (305)
+...++ .. +..........+.+..+.+.+.+|.|.+.+..+.+. .+......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 319 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST-------DIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH-------HHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc-------cchhhHHH
Confidence 100000 00 000145556666777788888999999888888777 67777778
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHHHHHHHhh
Q 035493 241 LTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSIIALAFCL 286 (305)
Q Consensus 241 ~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 286 (305)
..++...++.++++++.||+|||+.+..+...+.++++.++.....
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999888888877777655443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.3e-24 Score=188.77 Aligned_cols=254 Identities=11% Similarity=0.008 Sum_probs=196.2
Q ss_pred HHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHH
Q 035493 12 VILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIF 67 (305)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~ 67 (305)
++.....+.+..+..+++....++..|.+.+++|++.++.+++.+ ++..+.++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555666667788888888999999999999999999998877 88899999999
Q ss_pred HHHHH---HhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhh------
Q 035493 68 GWLAI---AFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVVS------ 138 (305)
Q Consensus 68 ~~~~~---~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~------ 138 (305)
+.++. ++++|++.++++|++.|++.+...+...+++.|++|+|+|+++.++.+.+..+|..+++.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99998 888999999999999999999999999999999999999999999999999999999999885542
Q ss_pred ------------------------hHHHHHHhHHHHHHHHHHh--hcccCChHHHHH-----HHHHHHHHhhCCCcchhh
Q 035493 139 ------------------------WRALALIAAVPCLLQVVGL--FFIPESPRWLKK-----SLKLLYSALRGKTADISM 187 (305)
Q Consensus 139 ------------------------wr~~~~~~~~~~~~~~~~~--~~~~es~~~~~~-----~~~~~~~~~~~~~~~~~~ 187 (305)
||+.|++.+...++..+.. ...||+++...+ +.++..++..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------ 257 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARI------ 257 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTC------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhC------
Confidence 9999988776665554433 335666542100 000011111100
Q ss_pred hHHHHHHHHHHHHHhhhhchhHHHHhHHHH-HHHh-cccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 035493 188 ESADIRVGVGLMVMQPLVGSAAIACYASYI-FAAA-ELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPL 265 (305)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~ 265 (305)
++ .+......+...........|.|.+ +++. |.+. .+.+.......++..+++++.+++.||++||+.
T Consensus 258 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 327 (438)
T 3o7q_A 258 --RH-WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV 327 (438)
T ss_dssp --SH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred --hH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 00 1333344444444566777888888 8775 8988 889999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHH
Q 035493 266 LLASDIGTCLSLSIIA 281 (305)
Q Consensus 266 ~~~~~~~~~~~~~~~~ 281 (305)
+..+..+..++++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 328 LAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777766655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=1.6e-24 Score=188.84 Aligned_cols=257 Identities=10% Similarity=-0.025 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHH
Q 035493 10 PAVILSTLVAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFC 65 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~ 65 (305)
+.++.......++.+..+++.....+..|.+.+++ .+.++.+++.+ ++..+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34566677777888888889899999999999999 99999998877 888999999
Q ss_pred HHHHHHHHh----hcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----h
Q 035493 66 IFGWLAIAF----SKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----V 137 (305)
Q Consensus 66 ~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~ 137 (305)
.++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++.. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 99999999999999999999999999999999999999999999999999999998888744 4
Q ss_pred h-hHHHHHHhHHHHHHHHH-HhhcccCChHHHHH----H---H-HHHHHHhhCCCcch-----hhhHHHH-HHHHHHHHH
Q 035493 138 S-WRALALIAAVPCLLQVV-GLFFIPESPRWLKK----S---L-KLLYSALRGKTADI-----SMESADI-RVGVGLMVM 201 (305)
Q Consensus 138 ~-wr~~~~~~~~~~~~~~~-~~~~~~es~~~~~~----~---~-~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~ 201 (305)
+ ||+.|++.++..++..+ ..+.+||+|+.... + . ++..++.++++.+. .+..++. .+...+..+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHH
Confidence 7 99999998888766654 44668887753211 0 0 00000000000000 0001111 133444444
Q ss_pred hhhhchhHHHHhHHHHHHH-hcccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc--CCchhhhhHhHHHH
Q 035493 202 QPLVGSAAIACYASYIFAA-AELMNIQGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKS--GRRPLLLASDIGTC 274 (305)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--g~r~~~~~~~~~~~ 274 (305)
...........+.|.++++ .|+++ .+.+.......++.+++.++.+++.||+ +||+.+..+..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFAL-------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4445566777888998888 68888 8889999999999999999999999999 99988877655544
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=3.3e-21 Score=163.97 Aligned_cols=230 Identities=12% Similarity=0.034 Sum_probs=179.2
Q ss_pred HHHhhhhhhhcccccccchhhhhhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 035493 18 VAICGSVAYGCSVGYSSPVEAGITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIA 73 (305)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~ 73 (305)
...+..+..+++.....+..|.+.+++|.++++.+++.+ ++..+..+..++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 345556667778888899999999999999999998777 67788889999999999
Q ss_pred hhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHH
Q 035493 74 FSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVP 149 (305)
Q Consensus 74 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~ 149 (305)
+++|++.+++.|++.|++.+...+...+++.|++|+|+|+++.+..+....+|..++|.++.. .+||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988744 4899999998888
Q ss_pred HHHHHH-HhhcccCChHHHHHHHHHHHHHhhCCCcchhhhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHH-hccccc
Q 035493 150 CLLQVV-GLFFIPESPRWLKKSLKLLYSALRGKTADISMESADIR-VGVGLMVMQPLVGSAAIACYASYIFAA-AELMNI 226 (305)
Q Consensus 150 ~~~~~~-~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 226 (305)
.++..+ ..+.+||+|+... + .++..++.++..++++ +......+...........+.|.++++ .|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 234 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA---P-----RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSS- 234 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC---C-----CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHH-
T ss_pred HHHHHHHHHHHCcccCCCCc---c-----cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 777665 4566888765210 0 0111111122222222 233333344444456666777777777 68888
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 035493 227 QGNDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGR 262 (305)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~ 262 (305)
.+.+.......++.+++.++.+++.||.++
T Consensus 235 ------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 235 ------MTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp ------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=6.7e-19 Score=155.03 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=99.3
Q ss_pred hcCCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhh
Q 035493 44 LGLSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYV 98 (305)
Q Consensus 44 ~~~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~ 98 (305)
+|.+.++.+++.+ ++..+.++..++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 9999999988777 788889999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCcc--hhhHHhHHHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHH
Q 035493 99 IPIYIAEITPKNV--RGAFTAANQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 99 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~ 156 (305)
..++++|++|+++ |+.+.+..+.+.++|..++|.++.. .|||+.|++.++..++..+.
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 7778888889999999888887744 48999999987766555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.50 E-value=8.1e-14 Score=123.58 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=103.0
Q ss_pred hhhhhhhc------CCchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhc-chhHHHHHH
Q 035493 38 AGITADLG------LSLIEYSVFGS-------------------------AMWLSDLFCIFGWLAIAFSK-DAWSLYLGR 85 (305)
Q Consensus 38 ~~~~~~~~------~s~~~~~~~~s-------------------------~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r 85 (305)
+.+.+++| .+..+.+++.+ ++..+.++..++.++.++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34677889 99999988776 67888889999999999998 999999999
Q ss_pred HHHhhcccchhhhhhhhhhhccCCcchhhHHhH---HHHHHHHHHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHHh
Q 035493 86 CSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA---NQLLVASGLSVIYLVGTV----VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 86 ~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~~ 157 (305)
++.|++.+...+...+++.|++|+++|++..+. .....++|..++|.++.. .+||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 888899999999888743 489999999887766655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=2.1e-13 Score=117.56 Aligned_cols=238 Identities=9% Similarity=0.024 Sum_probs=127.5
Q ss_pred cccchhhh-hhhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHH---HHHHhhcch-hHHH
Q 035493 32 YSSPVEAG-ITADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGW---LAIAFSKDA-WSLY 82 (305)
Q Consensus 32 ~~~~~~~~-~~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~---~~~~~~~~~-~~l~ 82 (305)
...+..|. +++++|.|+.+.+++.+ ++..+..+..++. ....+++.. ..+.
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665 56679999999988777 5555554443321 111222211 1234
Q ss_pred HHHHHHhhcccchhhhhhhhhhhccCC--cchhhHHhHHHHHHHHHHHHHHHhhhh---hhhHHHHHHhHHHHHHHHHHh
Q 035493 83 LGRCSLGIGLELMTYVIPIYIAEITPK--NVRGAFTAANQLLVASGLSVIYLVGTV---VSWRALALIAAVPCLLQVVGL 157 (305)
Q Consensus 83 ~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~---~~wr~~~~~~~~~~~~~~~~~ 157 (305)
..|.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.++.. .+||+.|++.++..++..+..
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~ 184 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 567777777666655555555555543 345666666655666677777766643 379999998777655554444
Q ss_pred hccc-CChHHHHHHHHHHHHHhhCCCcchh---hhHHHHH-HHHHHHHHhhhhchhHHHHhHHHHHHHh-c---cccccc
Q 035493 158 FFIP-ESPRWLKKSLKLLYSALRGKTADIS---MESADIR-VGVGLMVMQPLVGSAAIACYASYIFAAA-E---LMNIQG 228 (305)
Q Consensus 158 ~~~~-es~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~ 228 (305)
+..+ |+|+. .+++++ ++.++++.+.+ +..++.+ +......+.....+.....+.|.++++. + .+.
T Consensus 185 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (417)
T 2cfq_A 185 FFAKTDAPSS-ATVANA--VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT--- 258 (417)
T ss_dssp CSSCCCCSCS-SCSSSS--SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHT---
T ss_pred HHcCcccccc-cccccc--cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh---
Confidence 4444 43220 000000 00000000000 0111111 1222222222222333334456666542 2 223
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhHhHHHHHHHHH
Q 035493 229 NDSMNLLFVTDLLTAIIQLPAIVASVLLTDKSGRRPLLLASDIGTCLSLSI 279 (305)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g~r~~~~~~~~~~~~~~~~ 279 (305)
...+.......+...++.++.+++.||+|||+.+..+..+.++..+.
T Consensus 259 ----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 259 ----RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 44566667777888899999999999999999888776666554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.60 E-value=2.6e-07 Score=79.85 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=95.0
Q ss_pred cccchhhhhhhh-hcCCchhHHHHHH--------------------------HHHHHHHHHH-HHHHHHHhh--cchhHH
Q 035493 32 YSSPVEAGITAD-LGLSLIEYSVFGS--------------------------AMWLSDLFCI-FGWLAIAFS--KDAWSL 81 (305)
Q Consensus 32 ~~~~~~~~~~~~-~~~s~~~~~~~~s--------------------------~l~~~~~~~~-~~~~~~~~~--~~~~~l 81 (305)
......|.+.++ +|.+..+.+++.+ .+..+..+.. ++.++..+. .+.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344555665555 8999988876555 2233333333 444444444 367778
Q ss_pred HHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHH-HHHHHHHhhhh----hhhHHHHHHhHHHHHHHHHH
Q 035493 82 YLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVAS-GLSVIYLVGTV----VSWRALALIAAVPCLLQVVG 156 (305)
Q Consensus 82 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~----~~wr~~~~~~~~~~~~~~~~ 156 (305)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+... .||+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999998998998899999999999999999999999988 98888877643 48999999888877776655
Q ss_pred hhcc
Q 035493 157 LFFI 160 (305)
Q Consensus 157 ~~~~ 160 (305)
....
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.37 E-value=7.5e-07 Score=78.00 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhc---------chhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHH
Q 035493 60 LSDLFCIFGWLAIAFSK---------DAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVI 130 (305)
Q Consensus 60 ~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 130 (305)
.+..+..++..+..+.. +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++......+|..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555432 677788888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhh---hhHHHHHHhHHHHHHHHHHh-hcccC
Q 035493 131 YLVGTVV---SWRALALIAAVPCLLQVVGL-FFIPE 162 (305)
Q Consensus 131 ~~i~~~~---~wr~~~~~~~~~~~~~~~~~-~~~~e 162 (305)
+.+.... +++..|...+...++..+.. ...++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988555 56777877777766665444 33444
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.25 E-value=1.4e-05 Score=69.76 Aligned_cols=71 Identities=17% Similarity=0.063 Sum_probs=54.0
Q ss_pred hhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHhHHHHHHHHH-HhhcccCC
Q 035493 95 MTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTV----------VSWRALALIAAVPCLLQVV-GLFFIPES 163 (305)
Q Consensus 95 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~----------~~wr~~~~~~~~~~~~~~~-~~~~~~es 163 (305)
..+....+.+|.+|.+.|+++.++......+|..+++.+... .++...|++.+..+++..+ .++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 456677899999999999999999988888888777655421 2456677777777776664 45779998
Q ss_pred hH
Q 035493 164 PR 165 (305)
Q Consensus 164 ~~ 165 (305)
..
T Consensus 467 kg 468 (491)
T 4gc0_A 467 KG 468 (491)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.25 E-value=3e-06 Score=72.72 Aligned_cols=108 Identities=8% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhH-HHHHHHHHHHHHHHhhh
Q 035493 57 AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAA-NQLLVASGLSVIYLVGT 135 (305)
Q Consensus 57 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~ 135 (305)
.+..+..+..++....++.++.+.+++..++.|++.+...+....++.|.+|++.|+...+. ++....+|..++|.+..
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 55566666667666677778888888888888888777777778899999999999998888 46666777777776664
Q ss_pred ----hhhhHHHHHHhHHHHHHHHHHh-hcccCCh
Q 035493 136 ----VVSWRALALIAAVPCLLQVVGL-FFIPESP 164 (305)
Q Consensus 136 ----~~~wr~~~~~~~~~~~~~~~~~-~~~~es~ 164 (305)
..|++..|.+.++..++..+.. ...||.+
T Consensus 371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3478888888888777766543 4466543
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.20 E-value=2.3e-05 Score=67.37 Aligned_cols=124 Identities=10% Similarity=-0.098 Sum_probs=88.2
Q ss_pred cchhhhh--hhhhcCCchhHHHHHH------------------------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 035493 34 SPVEAGI--TADLGLSLIEYSVFGS------------------------AMWLSDLFCIFGWLAIAFSKDAWSLYLGRCS 87 (305)
Q Consensus 34 ~~~~~~~--~~~~~~s~~~~~~~~s------------------------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 87 (305)
....|.+ ++.+|.+..+.++..+ .+..+.++..++.++..+.++.+.+... ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 3444444 4455999888876555 6667777777788788888877665544 88
Q ss_pred HhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhh----hhh-hHHHHHHhHHHHHHHHHHhhcc
Q 035493 88 LGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGT----VVS-WRALALIAAVPCLLQVVGLFFI 160 (305)
Q Consensus 88 ~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~----~~~-wr~~~~~~~~~~~~~~~~~~~~ 160 (305)
.|++.+...+...++..|.+|++ |+...++.. ...+|..++|.+.. ..| ++..|++.++..++..+..+..
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999866 888887766 45577777777663 446 8888887666554444433333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=1.3e-05 Score=70.74 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhh---------cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHH
Q 035493 59 WLSDLFCIFGWLAIAFS---------KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSV 129 (305)
Q Consensus 59 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 129 (305)
..+..+.+++.++.++. .+.+.+.+..++.|++.+...+....++.|..|+++|++++++.+....+|..+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 456 (524)
T 2xut_A 377 GAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW 456 (524)
T ss_dssp HTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555543 366778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhh------hh---------HHHHHHhHHHHHHHHHHh
Q 035493 130 IYLVGTVV------SW---------RALALIAAVPCLLQVVGL 157 (305)
Q Consensus 130 ~~~i~~~~------~w---------r~~~~~~~~~~~~~~~~~ 157 (305)
++.+.... +| +..|++.+...++..+..
T Consensus 457 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
T 2xut_A 457 VLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVF 499 (524)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 98887443 24 333666666655555444
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.79 E-value=9.1e-06 Score=68.41 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHHhhcccchhhhhhhhhhhccCCcchhhHHhHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 035493 76 KDAWSLYLGRCSLGIGLELMTYVIPIYIAEITPKNVRGAFTAANQLLVASGLSVIYLVGTVV----SWRALALIA 146 (305)
Q Consensus 76 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~----~wr~~~~~~ 146 (305)
++.+.+.+..++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+...+ +|+..+...
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 366777788899999999999999999999998 8899999999999999999888877544 566666553
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=37.22 E-value=11 Score=16.72 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=10.2
Q ss_pred HHHhhcccCCchh
Q 035493 253 SVLLTDKSGRRPL 265 (305)
Q Consensus 253 ~~~l~d~~g~r~~ 265 (305)
.|.+..++|||..
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999854
No 16
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=28.79 E-value=85 Score=17.84 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=20.7
Q ss_pred hccCCcchhhHHhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 035493 105 EITPKNVRGAFTAANQLLVASGLSVIYLVGTVVSWRAL 142 (305)
Q Consensus 105 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~wr~~ 142 (305)
....+++...+..+.......|...+-.+....+||.+
T Consensus 4 ~~~g~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~I 41 (56)
T 2fyu_K 4 RFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (56)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccHhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHH
Confidence 34445555555555555555565555444555567653
Done!