BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035495
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 211/444 (47%), Gaps = 49/444 (11%)
Query: 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPE 62
S+ H+ ++P GHLIP + AK++ G +T I+ P S
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTF------------VIAGEGPPSKA 51
Query: 63 KFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGK 122
+ + L LP S LPP + T+ S I + + + + P + D + G+
Sbjct: 52 QRTV-LDSLPSSISSVFLPP-VDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGR 109
Query: 123 PPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTSMWLNLPQ-KKTNSDEFT-- 179
P ++ D F A DVA F A V S +L+LP+ +T S EF
Sbjct: 110 LPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVL----SFFLHLPKLDETVSCEFREL 165
Query: 180 -----LPG---FPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAED 231
LPG + Q K DD K++ N + E+ G+L NT +
Sbjct: 166 TEPLMLPGCVPVAGKDFLDPAQDRK--------DDAYKWLLHNTKRYKEAEGILVNTFFE 217
Query: 232 IEPGALQWLR--NYIKLPVWAIGPLLPQSYLKKSKNPE-KIIEWLDLHDPASVLHISFGS 288
+EP A++ L+ K PV+ +GPL+ + + E + ++WLD SVL++SFGS
Sbjct: 218 LEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGS 277
Query: 289 QNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSE-------WLPEGFEERIK 341
T++ Q+ EL +GL S + FLWVI P G + F S +LP GF ER K
Sbjct: 278 GGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK 337
Query: 342 EIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKM 401
K+G ++ WAPQ ++L+H STG FL+HCGWNS LES+ G+P I WP+ AEQ N+ +
Sbjct: 338 --KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVL 395
Query: 402 LVEEMGVAVEMTRGVQSTIVGHEV 425
L E++ A+ G + EV
Sbjct: 396 LSEDIRAALRPRAGDDGLVRREEV 419
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 196/435 (45%), Gaps = 43/435 (9%)
Query: 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNI 66
H+ M+P GH+ P LAK +H GF IT NT N + L + S P + + F
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLR-GFHITFVNTEYNHKRL---LKSRGPKAFDGF-- 63
Query: 67 NLVELPFCSSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPI- 125
+ F S GL P E ++S D+ + ++ P LL + PP+
Sbjct: 64 --TDFNFESIPDGLTP-MEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVT 120
Query: 126 CIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTL------AYTSMWLNLPQKK----TNS 175
C+++D + + A+ NV + + A L ++ + +P K TN
Sbjct: 121 CLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI-IPFKDESYLTNG 179
Query: 176 D-EFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEP 234
E + P +F + + ++R +D +F + + +L NT ++E
Sbjct: 180 CLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 235 GALQWLRNYIKLPVWAIGPL------LPQSYLKKS------KNPEKIIEWLDLHDPASVL 282
+ L + I ++ IGPL PQ + S K + ++WL+ +P SV+
Sbjct: 240 DVINALSSTIP-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVV 298
Query: 283 HISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKE 342
+++FGS ++ Q++E GL KSFLW+I P + F SE+ E
Sbjct: 299 YVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF--------TNE 350
Query: 343 IKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKML 402
I L+ +W PQ ++L+H S G FL+HCGWNS ES+ G+P + WP A+Q + + +
Sbjct: 351 IADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
Query: 403 VEEMGVAVEMTRGVQ 417
E + +E+ V+
Sbjct: 411 CNEWEIGMEIDTNVK 425
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 198/434 (45%), Gaps = 69/434 (15%)
Query: 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRS------TGFKITIANTPLNIQYLQNTISSA 56
++N + +P GHL L AK + T F I P Y+++ ++S
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS- 65
Query: 57 NPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDI 116
P+ I L++LP PP E + S + I F S P ++ I
Sbjct: 66 ---QPQ---IQLIDLPEVE-----PPPQELLK--SPEFYILTFLESLIP-----HVKATI 107
Query: 117 KEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTSMWLNLPQKKT--- 173
K + ++ D F +DV G + F T + + S+ L+L ++
Sbjct: 108 KTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTS----NVGFLSLMLSLKNRQIEEV 163
Query: 174 --NSDE----FTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSF-ESYGMLC 226
+SD +PG + ++ L A + D + + F ++ G++
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNV------LPDACFNKDGGYIAYYKLAERFRDTKGIIV 217
Query: 227 NTAEDIEPGALQWLRNYIKL--PVWAIGPLLPQSYLKKSKNP-------EKIIEWLDLHD 277
NT D+E ++ L ++ + P++A+GPLL LK NP + I++WLD
Sbjct: 218 NTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQP 274
Query: 278 PASVLHISFGSQN-TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGF 336
SV+ + FGS + SQ+ E+ +GL+ S FLW + PEGF
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGF 324
Query: 337 EERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQT 396
E ++ +G++ WAPQ+E+L+HK+ G F+SHCGWNS+LES+ G+P + WPI AEQ
Sbjct: 325 LEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 397 YNSKMLVEEMGVAV 410
N+ LV+E GV +
Sbjct: 384 LNAFRLVKEWGVGL 397
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 198/434 (45%), Gaps = 69/434 (15%)
Query: 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRS------TGFKITIANTPLNIQYLQNTISSA 56
++N + +P GHL L AK + T F I P Y+++ ++S
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLAS- 65
Query: 57 NPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDI 116
P+ I L++LP PP E + S + I F S P ++ I
Sbjct: 66 ---QPQ---IQLIDLPEVE-----PPPQELLK--SPEFYILTFLESLIP-----HVKATI 107
Query: 117 KEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTSMWLNLPQKKT--- 173
K + ++ D F +DV G + F T + + S+ L+L ++
Sbjct: 108 KTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTS----NVGFLSLMLSLKNRQIEEV 163
Query: 174 --NSDE----FTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSF-ESYGMLC 226
+SD +PG + ++ L A + D + + F ++ G++
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNV------LPDACFNKDGGYIAYYKLAERFRDTKGIIV 217
Query: 227 NTAEDIEPGALQWLRNYIKL--PVWAIGPLLPQSYLKKSKNP-------EKIIEWLDLHD 277
NT D+E ++ L ++ + P++A+GPLL LK NP + I++WLD
Sbjct: 218 NTFSDLEQSSIDALYDHDEKIPPIYAVGPLLD---LKGQPNPKLDQAQHDLILKWLDEQP 274
Query: 278 PASVLHISFGSQN-TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGF 336
SV+ + FGS + SQ+ E+ +GL+ S FLW + PEGF
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGF 324
Query: 337 EERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQT 396
E ++ +G++ WAPQ+E+L+HK+ G F+SHCGWNS+LES+ G+P + WPI AEQ
Sbjct: 325 LEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 397 YNSKMLVEEMGVAV 410
N+ LV+E GV +
Sbjct: 384 LNAFRLVKEWGVGL 397
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 157/341 (46%), Gaps = 55/341 (16%)
Query: 99 FTSSQSPKTPLYNLLMDIKE-----------KAGKPPICIITDTFFGWAVDVAKSAGSTN 147
+ SS +P+ P++ + ++E + GK C++TD FF + D+A+ +
Sbjct: 82 YVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKW 141
Query: 148 VTFATGGAYVTLAYTSMWLNLPQKKTNSDEF-------TLPGFPERCHFHITQLHKYLRM 200
V T G + L T ++ +L ++KT S E LPGFPE L+
Sbjct: 142 VPLWTAGPHSLL--THVYTDLIREKTGSKEVHDVKSIDVLPGFPE------------LKA 187
Query: 201 AGGSDDWSKFMQPNITQSFESYGM--------LCNTAEDIEPGALQWLRNYIKLPVWAIG 252
+ + K + G+ N+ I P L + KL + +G
Sbjct: 188 SDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKL-LLNVG 246
Query: 253 PLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFL 312
P + +K + +EWLD H+ +SV++ISFGS T ++ L LE F+
Sbjct: 247 PFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFI 306
Query: 313 WVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCG 372
W R + + E LP+GF ER K +G +V WAPQ+EIL H S G FL+H G
Sbjct: 307 W--------SFRGDPK-EKLPKGFLERTK--TKGKIVA-WAPQVEILKHSSVGVFLTHSG 354
Query: 373 WNSVLESLSQGLPTIGWPIAAEQTYNSKML--VEEMGVAVE 411
WNSVLE + G+P I P +Q N+ + V E+GV V+
Sbjct: 355 WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD 395
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 157/326 (48%), Gaps = 21/326 (6%)
Query: 96 INFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGG- 154
I FT + +P++ ++M + E G+P C++ D F +A D+A G + F T G
Sbjct: 87 IELFTRA-APESFRQGMVMAVAE-TGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGP 144
Query: 155 ----AYVTLAYTSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKF 210
+V + + + + DE L P L + + + +S+
Sbjct: 145 NSLSTHVYIDEIREKIGVSGIQGREDEL-LNFIPGMSKVRFRDLQEGIVFGNLNSLFSRM 203
Query: 211 MQPNITQSFESYGMLCNTAEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKII 270
+ ++ + N+ E+++ L++ +K + IGP + N +
Sbjct: 204 LHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYL-NIGPFNLITPPPVVPNTTGCL 262
Query: 271 EWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSE 330
+WL P SV++ISFG+ T ++++ L LEAS F+W LR + R
Sbjct: 263 QWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIW--------SLRDKARVH 314
Query: 331 WLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWP 390
LPEGF E+ + G++V WAPQ E+L+H++ GAF++HCGWNS+ ES++ G+P I P
Sbjct: 315 -LPEGFLEKTR--GYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP 370
Query: 391 IAAEQTYNSKMLVEEMGVAVEMTRGV 416
+Q N +M+ + + + V + GV
Sbjct: 371 FFGDQRLNGRMVEDVLEIGVRIEGGV 396
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 340 IKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNS 399
+ E+ + V W PQL+IL+ S AF++H G S +E+LS +P + P AEQT N+
Sbjct: 300 LGEVPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
Query: 400 KMLVEEMGVAVEMTR 414
+ +V E+G+ + R
Sbjct: 358 ERIV-ELGLGRHIPR 371
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 352 WAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYN 398
W PQ ++L H T AF++H G N + E++ G+P +G P+ A+Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 340 IKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNS 399
+ E+ + V +W PQL IL + F++H G E L+ P I P A +Q N+
Sbjct: 278 LGELPDNVEVHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Query: 400 KMLVEEMGVAVEMT 413
ML + +GVA ++
Sbjct: 336 DML-QGLGVARKLA 348
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44
HI M + AHGH+ P L + +++ + G ++T A P+
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIREL-VARGHRVTYAIPPV 45
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 259 YLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPP 318
Y+ + +++ W+ L ++FG++ + ++ + + L + L P
Sbjct: 206 YVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQEL----PK 261
Query: 319 VGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLE 378
+GF++ + + ++ + +G+L P I + + H G + L
Sbjct: 262 LGFEVVVAVSDK-----LAQTLQPLPEGVLAAGQFPLSAIX--PACDVVVHHGGHGTTLT 314
Query: 379 SLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM---TRGVQSTI 420
LS+G+P + P+ AE ++S L+ G VE+ GV+S +
Sbjct: 315 CLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVESVL 358
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 71/165 (43%), Gaps = 15/165 (9%)
Query: 259 YLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPP 318
Y+ + +++ W+ L ++FG++ + ++ + + L + L P
Sbjct: 207 YVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQEL----PK 262
Query: 319 VGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLE 378
+GF++ + + ++ + +G+L P I + + H G + L
Sbjct: 263 LGFEVVVAVSDK-----LAQTLQPLPEGVLAAGQFPLSAI--XPACDVVVHHGGHGTTLT 315
Query: 379 SLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM---TRGVQSTI 420
LS+G+P + P+ AE ++S L+ G VE+ GV+S +
Sbjct: 316 CLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVESVL 359
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 233 EPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLH 276
EP WLR YIK W PLLP +K + E + + LDL+
Sbjct: 556 EPLTFAWLRRYIK---W---PLLPPKNIKDLXDLEAVHDVLDLY 593
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 233 EPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLH 276
EP WLR YIK W PLLP +K + E + + LDL+
Sbjct: 556 EPLTFAWLRRYIK---W---PLLPPKNIKDLMDLEAVHDVLDLY 593
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 340 IKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAE 394
+ E+ + + +W PQ +L H + H G + L +L G+P + +P A +
Sbjct: 287 LGEVPANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44
HI + HGH+ P L L ++ R G +IT TPL
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARR-GHRITYVTTPL 42
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 351 NWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGV 408
W P +L+H A L+H +VLE+ + G+P + P A + S V E+G+
Sbjct: 287 QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGL 342
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 331 WLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHC----GWNSVLESLSQGLPT 386
W GFE + K+ +W E++SH ++ A HC V + G +
Sbjct: 225 WTSMGFEAENEARKRAFA--DWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQS 282
Query: 387 IGWPIAAEQTYNSKMLVE 404
+ W A + + K L+E
Sbjct: 283 VVWDEAENRLHVQKALME 300
>pdb|1WEJ|H Chain H, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 223
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 229 AEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSK-NPEKIIEWLDLHDPAS 280
AE ++PGA +KL A G + +Y+ K PEK +EW+ DPAS
Sbjct: 9 AELVKPGAS------VKLSCTASGFNIKDTYMHWVKQRPEKGLEWIGRIDPAS 55
>pdb|1QBL|H Chain H, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 229 AEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSK-NPEKIIEWLDLHDPAS 280
AE ++PGA +KL A G + +Y+ K PEK +EW+ DPAS
Sbjct: 9 AELVKPGAS------VKLSCTASGFNIKDTYMHWVKQRPEKGLEWIGRIDPAS 55
>pdb|1QBM|H Chain H, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 229 AEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSK-NPEKIIEWLDLHDPAS 280
AE ++PGA +KL A G + +Y+ K PEK +EW+ DPAS
Sbjct: 9 AELVKPGAS------VKLSCTASGFNIKDTYMHWVKQRPEKGLEWIGRIDPAS 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,404,945
Number of Sequences: 62578
Number of extensions: 559254
Number of successful extensions: 1418
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 28
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)