Query 035495
Match_columns 427
No_of_seqs 144 out of 1347
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.8E-64 2.1E-68 484.9 38.9 402 3-426 7-424 (477)
2 PLN02670 transferase, transfer 100.0 6E-63 1.3E-67 476.0 37.7 404 3-426 4-420 (472)
3 PLN02764 glycosyltransferase f 100.0 8E-63 1.7E-67 471.3 36.8 395 1-426 1-398 (453)
4 PLN02208 glycosyltransferase f 100.0 7.7E-63 1.7E-67 474.2 35.6 388 4-426 3-392 (442)
5 PLN02534 UDP-glycosyltransfera 100.0 1.4E-61 3.1E-66 468.7 37.8 406 4-427 7-436 (491)
6 PLN02173 UDP-glucosyl transfer 100.0 1.7E-61 3.6E-66 463.9 36.9 382 1-426 1-399 (449)
7 PLN00414 glycosyltransferase f 100.0 1E-61 2.2E-66 467.0 35.2 389 1-426 1-393 (446)
8 PLN02992 coniferyl-alcohol glu 100.0 2.5E-61 5.3E-66 465.2 37.2 395 1-426 1-418 (481)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-60 3.1E-65 459.7 37.1 389 1-426 1-401 (451)
10 PLN03004 UDP-glycosyltransfera 100.0 1.8E-60 3.9E-65 457.0 36.8 400 5-426 3-415 (451)
11 PLN03007 UDP-glucosyltransfera 100.0 1.4E-60 3E-65 466.9 36.8 406 1-426 1-431 (482)
12 PLN03015 UDP-glucosyl transfer 100.0 8E-60 1.7E-64 452.0 37.5 396 4-426 2-417 (470)
13 PLN02555 limonoid glucosyltran 100.0 1E-59 2.3E-64 455.1 37.0 401 1-426 1-420 (480)
14 PLN02562 UDP-glycosyltransfera 100.0 3.4E-59 7.3E-64 451.5 36.9 384 1-426 1-404 (448)
15 PLN02152 indole-3-acetate beta 100.0 3.4E-59 7.3E-64 448.7 36.1 392 4-426 2-408 (455)
16 PLN02210 UDP-glucosyl transfer 100.0 4.7E-59 1E-63 450.9 36.0 381 3-426 6-406 (456)
17 PLN00164 glucosyltransferase; 100.0 3.9E-59 8.4E-64 454.3 35.4 396 3-426 1-422 (480)
18 PLN02207 UDP-glycosyltransfera 100.0 5.1E-58 1.1E-62 441.4 36.8 393 3-426 1-417 (468)
19 PLN02448 UDP-glycosyltransfera 100.0 1.9E-57 4.2E-62 442.6 36.5 379 3-426 8-406 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 9.7E-57 2.1E-61 439.2 34.5 391 5-426 2-431 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.5E-56 3.3E-61 437.1 35.3 396 3-426 1-425 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-46 3.6E-51 368.2 21.8 373 5-425 20-422 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3E-48 6.4E-53 387.0 -2.1 368 7-426 2-400 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 3.6E-42 7.8E-47 334.2 18.3 350 6-425 1-362 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 7.5E-41 1.6E-45 323.5 24.3 341 11-414 1-341 (392)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.9E-40 4.1E-45 330.9 14.0 380 5-414 5-404 (496)
27 COG1819 Glycosyl transferases, 100.0 1.4E-38 3E-43 304.2 16.5 343 5-414 1-350 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 1.5E-23 3.3E-28 197.2 22.5 300 6-426 1-311 (318)
29 PRK12446 undecaprenyldiphospho 99.9 4.6E-23 1E-27 194.8 24.1 293 6-414 2-307 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 3.7E-20 8.1E-25 173.9 25.1 109 279-416 188-301 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.7E-18 3.6E-23 161.9 22.5 304 6-425 1-314 (357)
32 PRK00726 murG undecaprenyldiph 99.7 2.3E-15 5E-20 143.9 24.0 294 6-414 2-306 (357)
33 TIGR03590 PseG pseudaminic aci 99.7 3.1E-15 6.8E-20 137.0 21.8 107 279-402 170-279 (279)
34 cd03785 GT1_MurG MurG is an N- 99.7 1.5E-14 3.2E-19 138.0 23.2 297 7-415 1-307 (350)
35 COG4671 Predicted glycosyl tra 99.6 3.6E-14 7.8E-19 126.7 19.8 323 4-414 8-347 (400)
36 TIGR01133 murG undecaprenyldip 99.5 3.2E-12 6.9E-17 121.8 22.5 58 354-414 243-303 (348)
37 PRK13609 diacylglycerol glucos 99.5 8.3E-12 1.8E-16 120.4 20.3 120 278-413 201-323 (380)
38 PF04101 Glyco_tran_28_C: Glyc 99.4 1.1E-14 2.4E-19 123.3 -0.7 119 281-415 1-127 (167)
39 PF03033 Glyco_transf_28: Glyc 99.4 6.3E-13 1.4E-17 109.0 9.1 125 8-155 1-132 (139)
40 TIGR00215 lpxB lipid-A-disacch 99.4 6.1E-12 1.3E-16 120.9 15.6 311 6-425 6-337 (385)
41 PRK13608 diacylglycerol glucos 99.2 1E-09 2.2E-14 106.1 19.5 121 277-414 200-324 (391)
42 PRK00025 lpxB lipid-A-disaccha 99.2 1.5E-09 3.3E-14 104.7 18.0 36 6-43 2-37 (380)
43 PLN02605 monogalactosyldiacylg 99.0 1.9E-08 4.1E-13 97.0 17.7 151 246-412 173-331 (382)
44 COG3980 spsG Spore coat polysa 99.0 6.3E-08 1.4E-12 84.7 18.7 116 281-414 160-276 (318)
45 cd03814 GT1_like_2 This family 99.0 4.4E-07 9.5E-12 86.4 26.0 65 344-415 246-317 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.0 7.8E-07 1.7E-11 88.2 28.3 110 282-415 265-385 (465)
47 cd03823 GT1_ExpE7_like This fa 98.7 1.1E-05 2.3E-10 76.6 25.8 65 344-415 242-314 (359)
48 TIGR03492 conserved hypothetic 98.7 9.4E-06 2E-10 78.4 23.2 145 245-414 179-348 (396)
49 cd03817 GT1_UGDG_like This fam 98.7 2.2E-05 4.8E-10 74.8 25.6 66 344-416 258-330 (374)
50 cd03800 GT1_Sucrose_synthase T 98.6 1.3E-05 2.9E-10 77.5 23.8 65 344-415 282-353 (398)
51 cd03794 GT1_wbuB_like This fam 98.6 1.2E-05 2.6E-10 77.0 22.0 64 344-414 274-349 (394)
52 cd03801 GT1_YqgM_like This fam 98.5 2.3E-05 5E-10 74.1 21.2 65 344-415 255-326 (374)
53 PF04007 DUF354: Protein of un 98.5 0.00015 3.1E-09 67.7 24.9 101 17-154 11-113 (335)
54 KOG3349 Predicted glycosyltran 98.5 1.3E-06 2.8E-11 68.9 8.8 122 280-414 4-134 (170)
55 cd03818 GT1_ExpC_like This fam 98.4 0.0002 4.3E-09 69.6 26.3 67 344-415 280-351 (396)
56 cd03808 GT1_cap1E_like This fa 98.4 9.3E-05 2E-09 69.8 23.4 65 344-415 245-314 (359)
57 cd03811 GT1_WabH_like This fam 98.4 1.8E-05 3.8E-10 74.6 18.2 66 344-416 245-315 (353)
58 cd04962 GT1_like_5 This family 98.4 0.00013 2.8E-09 70.0 23.8 64 344-414 252-320 (371)
59 PRK05749 3-deoxy-D-manno-octul 98.4 0.00013 2.9E-09 71.5 23.8 64 347-412 304-372 (425)
60 cd03816 GT1_ALG1_like This fam 98.4 0.0002 4.4E-09 69.9 24.9 40 4-44 2-41 (415)
61 cd03795 GT1_like_4 This family 98.4 0.00018 3.9E-09 68.4 23.3 116 281-415 192-317 (357)
62 cd03798 GT1_wlbH_like This fam 98.3 0.00028 6E-09 66.9 24.2 66 344-416 258-330 (377)
63 cd03820 GT1_amsD_like This fam 98.2 0.0006 1.3E-08 63.9 23.3 65 344-415 234-304 (348)
64 cd03802 GT1_AviGT4_like This f 98.2 0.00022 4.7E-09 67.2 20.2 112 282-413 173-293 (335)
65 cd03796 GT1_PIG-A_like This fa 98.1 0.00055 1.2E-08 66.5 21.0 47 344-392 249-302 (398)
66 cd03821 GT1_Bme6_like This fam 98.1 0.0018 3.9E-08 61.5 24.3 65 344-414 261-330 (375)
67 PRK10307 putative glycosyl tra 98.1 0.00093 2E-08 65.2 22.4 66 344-414 283-357 (412)
68 PLN02846 digalactosyldiacylgly 98.1 0.00067 1.4E-08 66.2 20.5 41 349-391 288-332 (462)
69 TIGR03449 mycothiol_MshA UDP-N 98.1 0.0029 6.3E-08 61.5 24.8 64 344-414 282-352 (405)
70 cd03805 GT1_ALG2_like This fam 98.1 0.002 4.3E-08 62.3 23.5 64 344-414 279-349 (392)
71 PLN02275 transferase, transfer 98.0 0.013 2.8E-07 56.4 28.3 62 345-413 286-358 (371)
72 cd03822 GT1_ecORF704_like This 98.0 0.0021 4.5E-08 61.1 22.5 63 344-414 246-318 (366)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 98.0 0.00089 1.9E-08 64.1 19.5 117 278-413 197-321 (363)
74 cd03799 GT1_amsK_like This is 98.0 0.0015 3.2E-08 62.0 20.8 64 344-414 235-311 (355)
75 COG1519 KdtA 3-deoxy-D-manno-o 97.9 0.016 3.4E-07 54.8 25.1 305 8-414 51-372 (419)
76 cd03825 GT1_wcfI_like This fam 97.9 0.0022 4.8E-08 61.1 20.3 64 344-414 243-314 (365)
77 cd04955 GT1_like_6 This family 97.9 0.0043 9.2E-08 59.1 22.1 47 344-392 247-301 (363)
78 cd03819 GT1_WavL_like This fam 97.9 0.015 3.2E-07 55.2 25.8 67 344-415 245-315 (355)
79 cd05844 GT1_like_7 Glycosyltra 97.8 0.0097 2.1E-07 56.8 23.9 64 344-414 244-320 (367)
80 TIGR00236 wecB UDP-N-acetylglu 97.8 0.01 2.2E-07 56.9 23.7 114 279-413 197-318 (365)
81 TIGR03568 NeuC_NnaA UDP-N-acet 97.8 0.012 2.6E-07 56.3 22.9 101 279-390 201-307 (365)
82 PRK14089 ipid-A-disaccharide s 97.8 0.00028 6.2E-09 66.3 11.4 138 245-412 143-286 (347)
83 COG5017 Uncharacterized conser 97.7 0.00036 7.8E-09 54.3 9.3 111 282-416 2-125 (161)
84 cd04951 GT1_WbdM_like This fam 97.7 0.0036 7.9E-08 59.4 17.7 60 344-410 244-308 (360)
85 TIGR02472 sucr_P_syn_N sucrose 97.6 0.01 2.2E-07 58.4 20.9 65 344-415 316-391 (439)
86 PRK01021 lpxB lipid-A-disaccha 97.6 0.0062 1.3E-07 60.7 18.7 153 231-404 370-529 (608)
87 TIGR02149 glgA_Coryne glycogen 97.6 0.035 7.7E-07 53.5 24.0 63 346-415 261-331 (388)
88 cd03812 GT1_CapH_like This fam 97.6 0.0097 2.1E-07 56.5 19.7 47 344-392 248-299 (358)
89 cd03807 GT1_WbnK_like This fam 97.6 0.027 5.8E-07 53.1 22.5 55 344-404 250-309 (365)
90 PF02684 LpxB: Lipid-A-disacch 97.6 0.0063 1.4E-07 57.8 17.3 153 231-404 142-301 (373)
91 PRK09922 UDP-D-galactose:(gluc 97.5 0.0066 1.4E-07 58.1 17.2 117 281-415 181-309 (359)
92 TIGR02468 sucrsPsyn_pln sucros 97.4 0.021 4.6E-07 60.7 20.9 66 344-414 547-621 (1050)
93 PRK15179 Vi polysaccharide bio 97.4 0.11 2.4E-06 53.7 25.8 64 344-414 573-641 (694)
94 cd03809 GT1_mtfB_like This fam 97.4 0.0072 1.6E-07 57.3 15.9 46 344-391 252-304 (365)
95 TIGR03087 stp1 sugar transfera 97.3 0.0067 1.5E-07 58.9 14.9 62 344-413 279-346 (397)
96 PF02350 Epimerase_2: UDP-N-ac 97.3 0.00089 1.9E-08 63.4 8.0 97 277-389 178-283 (346)
97 PLN02949 transferase, transfer 97.3 0.22 4.8E-06 49.2 26.0 47 344-392 334-387 (463)
98 TIGR02470 sucr_synth sucrose s 97.3 0.33 7.2E-06 50.6 28.0 65 344-415 618-694 (784)
99 TIGR03088 stp2 sugar transfera 97.3 0.11 2.4E-06 49.8 22.3 64 344-414 254-322 (374)
100 cd03804 GT1_wbaZ_like This fam 97.2 0.043 9.3E-07 52.1 19.0 110 283-415 198-311 (351)
101 cd03806 GT1_ALG11_like This fa 97.2 0.15 3.3E-06 49.8 22.4 46 344-391 304-356 (419)
102 PRK15427 colanic acid biosynth 97.1 0.066 1.4E-06 52.1 19.6 65 344-415 278-355 (406)
103 PLN02501 digalactosyldiacylgly 97.0 0.5 1.1E-05 48.3 24.0 46 346-393 602-652 (794)
104 cd01635 Glycosyltransferase_GT 96.9 0.16 3.6E-06 44.2 18.2 49 344-394 160-216 (229)
105 PF13844 Glyco_transf_41: Glyc 96.8 0.0079 1.7E-07 58.4 9.5 127 277-414 282-415 (468)
106 cd04950 GT1_like_1 Glycosyltra 96.6 0.4 8.8E-06 46.0 20.3 48 344-391 253-310 (373)
107 cd03792 GT1_Trehalose_phosphor 96.5 0.69 1.5E-05 44.3 21.0 64 344-414 251-323 (372)
108 cd03791 GT1_Glycogen_synthase_ 96.5 0.75 1.6E-05 45.8 21.7 46 344-391 350-402 (476)
109 COG0763 LpxB Lipid A disacchar 96.4 0.63 1.4E-05 43.8 18.6 137 231-389 145-289 (381)
110 PRK00654 glgA glycogen synthas 96.4 1.2 2.6E-05 44.2 24.7 37 6-43 1-43 (466)
111 PRK10422 lipopolysaccharide co 96.2 0.46 1E-05 45.3 17.7 51 1-51 1-52 (352)
112 PF06722 DUF1205: Protein of u 96.1 0.012 2.6E-07 44.1 5.0 54 266-319 27-85 (97)
113 PF13477 Glyco_trans_4_2: Glyc 96.1 0.055 1.2E-06 43.7 9.2 103 7-152 1-107 (139)
114 TIGR02095 glgA glycogen/starch 95.8 2.3 4.9E-05 42.4 22.3 46 344-391 345-397 (473)
115 COG1817 Uncharacterized protei 95.7 1.7 3.7E-05 39.7 18.0 106 13-154 7-114 (346)
116 TIGR02193 heptsyl_trn_I lipopo 95.6 0.99 2.1E-05 42.3 17.0 45 7-51 1-46 (319)
117 PRK10125 putative glycosyl tra 95.5 0.98 2.1E-05 44.0 16.8 93 295-416 256-357 (405)
118 COG0381 WecB UDP-N-acetylgluco 95.1 3.1 6.8E-05 39.3 19.6 116 278-415 203-327 (383)
119 cd04949 GT1_gtfA_like This fam 94.8 1.3 2.9E-05 42.2 15.6 67 344-414 260-329 (372)
120 cd04946 GT1_AmsK_like This fam 94.7 0.12 2.7E-06 50.2 8.1 66 344-414 288-360 (407)
121 TIGR02201 heptsyl_trn_III lipo 94.7 4.1 8.9E-05 38.6 18.2 45 7-51 1-46 (344)
122 COG3914 Spy Predicted O-linked 94.6 0.23 5E-06 48.8 9.2 110 277-396 427-542 (620)
123 PF00534 Glycos_transf_1: Glyc 94.5 0.15 3.3E-06 42.7 7.4 65 344-415 72-143 (172)
124 PF13692 Glyco_trans_1_4: Glyc 94.3 0.15 3.2E-06 40.8 6.4 63 344-412 52-118 (135)
125 PF13579 Glyco_trans_4_4: Glyc 94.1 0.087 1.9E-06 43.1 4.8 97 21-152 6-104 (160)
126 PF12000 Glyco_trans_4_3: Gkyc 93.2 0.57 1.2E-05 39.2 8.1 45 106-151 50-95 (171)
127 PLN00142 sucrose synthase 92.7 1.1 2.4E-05 47.1 11.0 46 366-416 669-718 (815)
128 cd03789 GT1_LPS_heptosyltransf 92.6 8 0.00017 35.3 20.1 45 7-51 1-46 (279)
129 KOG4626 O-linked N-acetylgluco 92.6 0.8 1.7E-05 45.6 9.1 126 277-415 756-890 (966)
130 COG1618 Predicted nucleotide k 92.3 0.29 6.2E-06 40.1 4.9 59 1-72 1-59 (179)
131 PRK15484 lipopolysaccharide 1, 91.8 1.1 2.4E-05 43.1 9.5 62 344-412 256-325 (380)
132 TIGR02918 accessory Sec system 90.5 2 4.4E-05 43.0 10.0 64 344-413 375-442 (500)
133 PRK02261 methylaspartate mutas 88.3 1.5 3.2E-05 35.4 5.8 42 4-46 2-43 (137)
134 cd03813 GT1_like_3 This family 87.9 5.2 0.00011 39.8 10.9 66 344-415 353-427 (475)
135 PF05159 Capsule_synth: Capsul 87.2 6.5 0.00014 35.8 10.2 45 344-391 182-226 (269)
136 PF13439 Glyco_transf_4: Glyco 87.1 1.7 3.7E-05 36.0 6.0 29 15-44 11-39 (177)
137 PRK15490 Vi polysaccharide bio 86.8 6.6 0.00014 39.5 10.5 65 344-415 454-523 (578)
138 PF06258 Mito_fiss_Elm1: Mitoc 86.7 19 0.0004 33.6 12.9 150 246-415 113-283 (311)
139 TIGR02195 heptsyl_trn_II lipop 84.8 35 0.00075 32.0 18.8 45 7-51 1-46 (334)
140 cd02067 B12-binding B12 bindin 84.4 2.1 4.5E-05 33.4 4.8 38 7-45 1-38 (119)
141 TIGR02919 accessory Sec system 82.8 26 0.00056 34.5 12.5 91 278-389 282-377 (438)
142 PRK13933 stationary phase surv 81.9 27 0.00059 31.4 11.3 40 7-49 2-41 (253)
143 PRK09814 beta-1,6-galactofuran 81.4 4.1 8.9E-05 38.4 6.4 66 344-414 206-286 (333)
144 PF02441 Flavoprotein: Flavopr 81.3 2.4 5.3E-05 33.7 4.1 45 6-52 1-45 (129)
145 PF02951 GSH-S_N: Prokaryotic 80.8 3 6.5E-05 32.6 4.3 38 6-44 1-41 (119)
146 TIGR00715 precor6x_red precorr 80.0 14 0.0003 33.3 8.9 33 7-45 2-34 (256)
147 PF04413 Glycos_transf_N: 3-De 79.9 16 0.00035 31.1 9.0 100 7-152 22-126 (186)
148 PF02310 B12-binding: B12 bind 77.8 7.1 0.00015 30.3 5.8 39 6-45 1-39 (121)
149 PRK08305 spoVFB dipicolinate s 77.4 5.4 0.00012 34.3 5.2 49 1-50 1-49 (196)
150 PHA01633 putative glycosyl tra 77.4 13 0.00029 35.0 8.3 44 344-389 200-253 (335)
151 PF04127 DFP: DNA / pantothena 76.1 1.6 3.4E-05 37.2 1.6 39 5-44 3-53 (185)
152 PHA02542 41 41 helicase; Provi 76.1 20 0.00043 35.7 9.4 43 7-50 192-234 (473)
153 COG3660 Predicted nucleoside-d 75.0 54 0.0012 29.5 10.6 98 300-414 189-299 (329)
154 PF08660 Alg14: Oligosaccharid 74.8 15 0.00033 30.8 7.2 34 10-43 2-36 (170)
155 PRK08506 replicative DNA helic 74.2 33 0.00072 34.1 10.6 44 7-51 194-237 (472)
156 PF02571 CbiJ: Precorrin-6x re 74.1 13 0.00028 33.4 7.0 38 107-151 56-100 (249)
157 PRK08057 cobalt-precorrin-6x r 73.7 15 0.00033 32.9 7.3 35 6-46 3-37 (248)
158 PRK02797 4-alpha-L-fucosyltran 73.1 20 0.00044 33.0 7.9 61 349-414 211-276 (322)
159 COG2894 MinD Septum formation 72.8 20 0.00043 31.3 7.3 36 7-43 3-40 (272)
160 PRK06321 replicative DNA helic 72.2 44 0.00095 33.3 10.8 45 7-51 228-272 (472)
161 PRK05595 replicative DNA helic 72.1 35 0.00077 33.6 10.2 43 8-51 204-247 (444)
162 TIGR03600 phage_DnaB phage rep 71.7 46 0.001 32.5 10.9 44 7-51 196-240 (421)
163 TIGR03713 acc_sec_asp1 accesso 71.5 20 0.00044 36.1 8.5 41 345-387 409-455 (519)
164 cd00532 MGS-like MGS-like doma 71.4 39 0.00085 25.9 8.4 31 18-51 10-40 (112)
165 PRK13934 stationary phase surv 71.0 67 0.0014 29.1 10.7 42 7-51 2-43 (266)
166 PRK06249 2-dehydropantoate 2-r 70.3 13 0.00027 34.8 6.4 44 1-51 1-44 (313)
167 PF02142 MGS: MGS-like domain 69.2 7.2 0.00016 29.0 3.7 27 22-51 2-28 (95)
168 PRK08006 replicative DNA helic 68.9 45 0.00098 33.2 10.1 43 7-50 226-269 (471)
169 cd02070 corrinoid_protein_B12- 68.7 13 0.00028 32.1 5.7 40 5-45 82-121 (201)
170 PRK06749 replicative DNA helic 68.7 54 0.0012 32.2 10.5 44 7-51 188-231 (428)
171 PRK14098 glycogen synthase; Pr 68.5 28 0.00061 34.8 8.8 46 344-391 361-413 (489)
172 COG2185 Sbm Methylmalonyl-CoA 68.4 12 0.00027 30.1 4.9 39 4-43 11-49 (143)
173 PF01075 Glyco_transf_9: Glyco 67.6 26 0.00057 31.1 7.7 99 278-389 104-208 (247)
174 COG1484 DnaC DNA replication p 67.2 10 0.00022 34.2 4.8 46 5-51 105-150 (254)
175 PRK14098 glycogen synthase; Pr 67.2 10 0.00022 38.0 5.3 41 1-44 1-49 (489)
176 smart00851 MGS MGS-like domain 67.1 47 0.001 24.2 7.9 27 22-51 2-28 (90)
177 PF12146 Hydrolase_4: Putative 67.1 12 0.00027 26.7 4.3 35 6-41 16-50 (79)
178 TIGR02370 pyl_corrinoid methyl 66.7 15 0.00033 31.6 5.7 44 4-48 83-126 (197)
179 PF07429 Glyco_transf_56: 4-al 66.6 30 0.00065 32.5 7.7 46 344-389 244-295 (360)
180 COG0859 RfaF ADP-heptose:LPS h 66.4 1.2E+02 0.0025 28.6 18.8 47 5-51 1-48 (334)
181 PRK09165 replicative DNA helic 66.3 40 0.00086 33.8 9.2 43 8-51 220-277 (497)
182 PF09001 DUF1890: Domain of un 65.7 8.7 0.00019 30.5 3.5 37 15-52 9-45 (139)
183 COG2910 Putative NADH-flavin r 65.7 7.9 0.00017 32.7 3.4 33 6-43 1-33 (211)
184 PRK07313 phosphopantothenoylcy 65.4 10 0.00022 32.2 4.2 44 6-51 2-45 (182)
185 TIGR00347 bioD dethiobiotin sy 64.2 80 0.0017 26.0 11.0 28 12-40 5-32 (166)
186 PRK06732 phosphopantothenate-- 63.5 7.2 0.00016 34.6 3.1 36 6-42 1-48 (229)
187 COG0003 ArsA Predicted ATPase 63.0 58 0.0013 30.5 9.0 42 6-48 2-44 (322)
188 KOG2941 Beta-1,4-mannosyltrans 62.2 1.4E+02 0.0031 28.2 22.0 57 3-72 10-69 (444)
189 PF01975 SurE: Survival protei 62.0 14 0.00031 31.8 4.5 44 6-51 1-44 (196)
190 cd02071 MM_CoA_mut_B12_BD meth 61.6 20 0.00042 28.1 5.0 38 7-45 1-38 (122)
191 PRK05920 aromatic acid decarbo 61.6 16 0.00035 31.6 4.8 45 5-51 3-47 (204)
192 PRK09620 hypothetical protein; 61.6 9.7 0.00021 33.7 3.6 38 5-43 3-52 (229)
193 PRK08760 replicative DNA helic 61.3 60 0.0013 32.4 9.4 44 7-50 231-274 (476)
194 cd01424 MGS_CPS_II Methylglyox 60.8 72 0.0016 24.2 8.7 83 18-149 11-100 (110)
195 COG4370 Uncharacterized protei 59.9 16 0.00036 33.4 4.6 40 377-416 324-365 (412)
196 PRK10916 ADP-heptose:LPS hepto 59.8 16 0.00034 34.7 4.9 46 6-51 1-47 (348)
197 cd00561 CobA_CobO_BtuR ATP:cor 59.3 1E+02 0.0022 25.5 9.4 34 7-41 4-37 (159)
198 PRK06029 3-octaprenyl-4-hydrox 59.0 17 0.00037 30.9 4.5 44 6-51 2-46 (185)
199 PRK13982 bifunctional SbtC-lik 58.2 11 0.00024 37.2 3.7 39 5-44 256-306 (475)
200 TIGR03029 EpsG chain length de 57.9 1.1E+02 0.0024 27.6 10.1 38 5-43 102-141 (274)
201 PRK08840 replicative DNA helic 57.0 95 0.0021 30.9 9.9 45 7-51 219-263 (464)
202 PF06180 CbiK: Cobalt chelatas 56.7 20 0.00043 32.4 4.7 39 280-318 2-43 (262)
203 cd02069 methionine_synthase_B1 56.6 30 0.00064 30.3 5.7 41 4-45 87-127 (213)
204 PRK10964 ADP-heptose:LPS hepto 56.6 37 0.0008 31.7 6.8 46 6-51 1-47 (322)
205 PRK05636 replicative DNA helic 56.5 49 0.0011 33.3 7.9 43 7-50 267-310 (505)
206 TIGR00665 DnaB replicative DNA 56.5 87 0.0019 30.8 9.6 44 7-50 197-240 (434)
207 PRK05748 replicative DNA helic 56.1 1E+02 0.0023 30.4 10.2 44 7-51 205-249 (448)
208 cd01421 IMPCH Inosine monophos 56.0 64 0.0014 27.5 7.2 38 20-72 11-48 (187)
209 PRK07004 replicative DNA helic 55.7 81 0.0018 31.3 9.2 43 8-51 216-259 (460)
210 PRK07773 replicative DNA helic 55.1 87 0.0019 34.1 10.0 45 7-51 219-263 (886)
211 PLN02470 acetolactate synthase 54.9 42 0.00092 34.5 7.4 92 285-390 2-109 (585)
212 COG0496 SurE Predicted acid ph 54.9 45 0.00098 29.9 6.5 96 22-151 16-124 (252)
213 PRK10916 ADP-heptose:LPS hepto 54.3 65 0.0014 30.4 8.2 99 278-389 179-286 (348)
214 PHA01630 putative group 1 glyc 54.0 1E+02 0.0022 29.0 9.3 41 351-391 196-241 (331)
215 PRK05986 cob(I)alamin adenolsy 53.0 1.5E+02 0.0032 25.4 9.8 36 5-41 22-57 (191)
216 COG2159 Predicted metal-depend 52.5 67 0.0015 29.7 7.6 69 291-379 140-210 (293)
217 PRK14099 glycogen synthase; Pr 52.4 24 0.00052 35.3 5.0 38 4-44 2-47 (485)
218 PRK13931 stationary phase surv 52.0 1.6E+02 0.0034 26.7 9.6 30 22-51 16-47 (261)
219 PRK10017 colanic acid biosynth 51.7 92 0.002 30.5 8.8 136 269-414 224-374 (426)
220 PRK13236 nitrogenase reductase 51.5 31 0.00066 31.9 5.3 42 1-43 1-43 (296)
221 COG0052 RpsB Ribosomal protein 51.5 1.8E+02 0.0039 26.0 10.2 31 124-154 157-189 (252)
222 cd01121 Sms Sms (bacterial rad 51.3 41 0.00089 32.3 6.2 41 8-49 85-125 (372)
223 COG0801 FolK 7,8-dihydro-6-hyd 50.9 34 0.00073 28.3 4.7 35 281-315 3-37 (160)
224 PRK00346 surE 5'(3')-nucleotid 50.6 1.6E+02 0.0034 26.5 9.3 42 7-51 2-43 (250)
225 PRK11823 DNA repair protein Ra 50.5 47 0.001 32.8 6.6 43 7-50 82-124 (446)
226 TIGR02655 circ_KaiC circadian 50.4 21 0.00046 35.6 4.3 45 6-51 264-308 (484)
227 TIGR02852 spore_dpaB dipicolin 50.3 30 0.00066 29.5 4.6 40 7-47 2-41 (187)
228 PRK11519 tyrosine kinase; Prov 50.2 36 0.00079 35.9 6.1 42 5-47 525-568 (719)
229 PF01210 NAD_Gly3P_dh_N: NAD-d 50.1 14 0.00031 30.4 2.6 32 7-44 1-32 (157)
230 KOG2825 Putative arsenite-tran 50.1 83 0.0018 28.2 7.2 68 4-72 17-88 (323)
231 PRK02155 ppnK NAD(+)/NADH kina 49.7 50 0.0011 30.5 6.2 29 361-391 63-95 (291)
232 cd01980 Chlide_reductase_Y Chl 49.5 1.5E+02 0.0033 28.9 10.0 26 124-152 351-376 (416)
233 TIGR00416 sms DNA repair prote 49.1 68 0.0015 31.7 7.5 43 7-50 96-138 (454)
234 PRK10964 ADP-heptose:LPS hepto 48.8 29 0.00064 32.4 4.8 95 279-389 178-278 (322)
235 PF00551 Formyl_trans_N: Formy 48.7 80 0.0017 26.7 7.0 40 108-153 70-110 (181)
236 COG4081 Uncharacterized protei 48.3 26 0.00057 27.5 3.4 34 12-46 11-44 (148)
237 cd01974 Nitrogenase_MoFe_beta 48.1 1.9E+02 0.0041 28.5 10.4 35 108-151 368-402 (435)
238 TIGR00725 conserved hypothetic 47.9 88 0.0019 25.8 6.9 98 267-391 21-123 (159)
239 COG2109 BtuR ATP:corrinoid ade 47.9 1.8E+02 0.0039 24.9 8.7 33 8-41 31-63 (198)
240 PF06925 MGDG_synth: Monogalac 47.2 32 0.00068 28.7 4.3 42 105-152 77-124 (169)
241 TIGR00421 ubiX_pad polyprenyl 46.9 29 0.00063 29.4 4.0 42 8-51 2-43 (181)
242 COG2861 Uncharacterized protei 46.8 20 0.00044 31.6 3.0 48 98-150 129-179 (250)
243 PRK08155 acetolactate synthase 46.4 80 0.0017 32.3 7.8 92 285-390 3-109 (564)
244 PRK13789 phosphoribosylamine-- 46.4 85 0.0018 30.8 7.7 37 1-44 1-37 (426)
245 TIGR00708 cobA cob(I)alamin ad 46.3 1.8E+02 0.0039 24.5 9.0 34 6-40 6-39 (173)
246 cd01423 MGS_CPS_I_III Methylgl 46.1 93 0.002 23.9 6.5 87 18-149 11-106 (116)
247 cd03412 CbiK_N Anaerobic cobal 46.0 42 0.00092 26.5 4.6 38 280-317 2-41 (127)
248 PRK04328 hypothetical protein; 45.7 2E+02 0.0044 25.7 9.5 43 6-49 24-66 (249)
249 COG4088 Predicted nucleotide k 45.7 27 0.0006 30.2 3.5 36 6-42 2-37 (261)
250 PRK12921 2-dehydropantoate 2-r 45.6 43 0.00092 30.9 5.3 40 6-51 1-40 (305)
251 cd02065 B12-binding_like B12 b 45.2 51 0.0011 25.5 5.0 40 8-48 2-41 (125)
252 PRK05647 purN phosphoribosylgl 44.7 1.5E+02 0.0032 25.6 8.1 33 6-42 2-36 (200)
253 PF01695 IstB_IS21: IstB-like 44.6 32 0.0007 29.0 3.9 45 5-50 47-91 (178)
254 TIGR01283 nifE nitrogenase mol 44.0 2.7E+02 0.006 27.5 10.9 35 107-150 385-419 (456)
255 TIGR03880 KaiC_arch_3 KaiC dom 43.8 47 0.001 29.0 5.1 44 7-51 18-61 (224)
256 PF02702 KdpD: Osmosensitive K 43.7 55 0.0012 28.3 5.0 40 5-45 5-44 (211)
257 PF02374 ArsA_ATPase: Anion-tr 43.5 41 0.00089 31.3 4.8 41 7-48 2-43 (305)
258 TIGR01501 MthylAspMutase methy 42.4 72 0.0016 25.6 5.3 39 6-45 2-40 (134)
259 PRK09841 cryptic autophosphory 42.3 41 0.00089 35.6 5.1 42 5-47 530-573 (726)
260 PRK06522 2-dehydropantoate 2-r 42.2 41 0.00089 31.0 4.6 40 6-51 1-41 (304)
261 cd07025 Peptidase_S66 LD-Carbo 42.2 58 0.0013 29.9 5.5 75 291-392 45-121 (282)
262 PLN02316 synthase/transferase 41.8 45 0.00097 36.5 5.3 41 4-45 586-632 (1036)
263 PRK08229 2-dehydropantoate 2-r 41.8 40 0.00088 31.7 4.6 41 5-51 2-42 (341)
264 COG0438 RfaG Glycosyltransfera 41.6 2.5E+02 0.0054 25.2 10.0 45 344-390 256-307 (381)
265 TIGR02015 BchY chlorophyllide 41.5 2.2E+02 0.0047 28.0 9.6 26 123-151 355-380 (422)
266 COG1066 Sms Predicted ATP-depe 41.4 33 0.00072 33.0 3.7 42 7-50 95-136 (456)
267 PRK14619 NAD(P)H-dependent gly 41.2 74 0.0016 29.5 6.2 35 3-43 2-36 (308)
268 TIGR02113 coaC_strep phosphopa 40.7 40 0.00088 28.4 3.9 43 7-51 2-44 (177)
269 PRK03359 putative electron tra 40.4 48 0.001 29.9 4.5 30 124-153 113-148 (256)
270 KOG3339 Predicted glycosyltran 40.2 56 0.0012 27.6 4.4 24 8-31 40-63 (211)
271 PLN02939 transferase, transfer 40.2 49 0.0011 35.8 5.2 47 344-392 836-889 (977)
272 TIGR00521 coaBC_dfp phosphopan 40.1 46 0.00099 32.2 4.6 45 5-51 3-47 (390)
273 PRK00881 purH bifunctional pho 40.0 1.3E+02 0.0027 30.2 7.5 39 6-51 5-43 (513)
274 COG1703 ArgK Putative periplas 39.6 72 0.0016 29.4 5.4 40 4-44 50-89 (323)
275 COG0143 MetG Methionyl-tRNA sy 39.0 56 0.0012 33.2 5.1 39 5-44 4-52 (558)
276 PF02571 CbiJ: Precorrin-6x re 38.8 1.6E+02 0.0034 26.5 7.6 104 21-151 117-226 (249)
277 PRK07454 short chain dehydroge 38.7 63 0.0014 28.4 5.2 39 1-43 1-39 (241)
278 cd07039 TPP_PYR_POX Pyrimidine 38.6 1.1E+02 0.0025 25.2 6.3 27 364-390 64-96 (164)
279 PRK14478 nitrogenase molybdenu 38.5 3.1E+02 0.0067 27.4 10.3 24 124-150 394-417 (475)
280 KOG0832 Mitochondrial/chloropl 38.5 1.1E+02 0.0024 26.8 6.1 111 15-154 90-206 (251)
281 PF01075 Glyco_transf_9: Glyco 38.4 2.1E+02 0.0045 25.2 8.5 40 5-45 105-148 (247)
282 COG0162 TyrS Tyrosyl-tRNA synt 38.1 38 0.00083 32.7 3.7 26 15-42 47-72 (401)
283 PF06506 PrpR_N: Propionate ca 37.9 61 0.0013 27.2 4.6 121 16-156 16-155 (176)
284 PLN02240 UDP-glucose 4-epimera 37.9 55 0.0012 30.8 4.9 37 1-42 1-37 (352)
285 PF02558 ApbA: Ketopantoate re 37.7 41 0.0009 27.1 3.5 27 24-51 12-38 (151)
286 PF04244 DPRP: Deoxyribodipyri 37.6 46 0.00099 29.4 3.9 25 18-43 47-71 (224)
287 PRK12342 hypothetical protein; 37.6 64 0.0014 29.1 4.9 30 124-153 110-145 (254)
288 COG1748 LYS9 Saccharopine dehy 37.2 2.4E+02 0.0053 27.2 8.9 41 5-51 1-43 (389)
289 cd07035 TPP_PYR_POX_like Pyrim 37.2 1.2E+02 0.0025 24.6 6.2 28 364-391 60-93 (155)
290 PRK06835 DNA replication prote 36.5 59 0.0013 30.6 4.7 45 5-50 183-227 (329)
291 COG2099 CobK Precorrin-6x redu 36.5 1.4E+02 0.0031 26.7 6.6 32 392-424 182-214 (257)
292 PRK07206 hypothetical protein; 36.0 1.6E+02 0.0035 28.5 7.9 32 6-43 3-34 (416)
293 TIGR00345 arsA arsenite-activa 36.0 1.6E+02 0.0036 26.9 7.5 25 23-48 3-27 (284)
294 PRK06849 hypothetical protein; 35.8 76 0.0016 30.6 5.5 37 4-45 3-39 (389)
295 TIGR00355 purH phosphoribosyla 35.5 1.6E+02 0.0034 29.4 7.4 37 21-72 12-48 (511)
296 CHL00072 chlL photochlorophyll 35.4 70 0.0015 29.5 4.9 39 6-45 1-39 (290)
297 COG0240 GpsA Glycerol-3-phosph 35.2 1.2E+02 0.0025 28.5 6.2 33 6-44 2-34 (329)
298 cd01840 SGNH_hydrolase_yrhL_li 35.2 96 0.0021 25.1 5.3 39 278-317 50-88 (150)
299 TIGR02699 archaeo_AfpA archaeo 35.0 67 0.0015 27.0 4.3 35 17-51 10-45 (174)
300 PRK12446 undecaprenyldiphospho 34.9 70 0.0015 30.4 5.0 27 361-389 91-120 (352)
301 COG1797 CobB Cobyrinic acid a, 34.9 71 0.0015 31.1 4.8 33 7-40 2-35 (451)
302 TIGR01281 DPOR_bchL light-inde 34.8 68 0.0015 29.0 4.8 38 6-44 1-38 (268)
303 PRK06719 precorrin-2 dehydroge 34.5 84 0.0018 25.9 4.8 34 4-43 12-45 (157)
304 TIGR02700 flavo_MJ0208 archaeo 34.5 65 0.0014 28.6 4.4 43 8-51 2-46 (234)
305 KOG0780 Signal recognition par 34.4 56 0.0012 31.2 4.0 43 5-48 100-143 (483)
306 PRK00784 cobyric acid synthase 34.4 3.3E+02 0.0073 27.2 9.9 36 6-42 3-39 (488)
307 COG0299 PurN Folate-dependent 34.3 1.6E+02 0.0034 25.3 6.3 67 298-390 69-135 (200)
308 TIGR01005 eps_transp_fam exopo 34.3 77 0.0017 33.8 5.7 42 5-47 545-588 (754)
309 PF10093 DUF2331: Uncharacteri 34.3 1.2E+02 0.0027 28.9 6.3 85 288-387 188-286 (374)
310 cd02032 Bchl_like This family 34.2 68 0.0015 28.9 4.7 38 6-44 1-38 (267)
311 cd02034 CooC The accessory pro 34.1 97 0.0021 24.0 4.8 37 7-44 1-37 (116)
312 cd07062 Peptidase_S66_mccF_lik 33.7 88 0.0019 29.1 5.3 74 292-392 50-125 (308)
313 PRK05579 bifunctional phosphop 33.5 74 0.0016 30.9 4.9 46 4-51 5-50 (399)
314 COG0467 RAD55 RecA-superfamily 33.5 94 0.002 27.9 5.4 46 5-51 23-68 (260)
315 PF07355 GRDB: Glycine/sarcosi 33.4 55 0.0012 30.7 3.8 43 103-151 66-118 (349)
316 PF09314 DUF1972: Domain of un 33.1 61 0.0013 27.6 3.8 57 6-73 2-63 (185)
317 TIGR00745 apbA_panE 2-dehydrop 32.9 51 0.0011 30.1 3.7 27 24-51 5-31 (293)
318 PRK02231 ppnK inorganic polyph 32.8 1.1E+02 0.0025 27.8 5.7 36 354-391 35-74 (272)
319 PLN02939 transferase, transfer 32.4 2.7E+02 0.006 30.4 9.1 41 3-44 479-525 (977)
320 cd01968 Nitrogenase_NifE_I Nit 32.2 4.3E+02 0.0092 25.7 10.1 33 109-150 348-380 (410)
321 TIGR02195 heptsyl_trn_II lipop 32.1 4.2E+02 0.0091 24.6 11.4 101 5-153 174-279 (334)
322 PTZ00345 glycerol-3-phosphate 32.1 2.7E+02 0.0058 26.7 8.4 35 4-44 10-51 (365)
323 PF14626 RNase_Zc3h12a_2: Zc3h 31.9 47 0.001 25.7 2.6 32 19-51 9-40 (122)
324 PRK05973 replicative DNA helic 31.7 1.1E+02 0.0023 27.4 5.2 44 7-51 66-109 (237)
325 TIGR03878 thermo_KaiC_2 KaiC d 31.7 3.9E+02 0.0084 24.1 11.3 39 7-46 38-76 (259)
326 TIGR02114 coaB_strep phosphopa 31.6 40 0.00087 29.8 2.6 18 23-41 29-46 (227)
327 PF13450 NAD_binding_8: NAD(P) 31.5 62 0.0013 22.2 3.0 19 23-42 9-27 (68)
328 PF08323 Glyco_transf_5: Starc 31.5 39 0.00085 30.2 2.5 22 22-44 22-43 (245)
329 COG2085 Predicted dinucleotide 31.4 96 0.0021 27.0 4.7 33 6-44 2-34 (211)
330 PF01372 Melittin: Melittin; 31.0 6 0.00013 20.9 -1.6 17 372-388 1-17 (26)
331 PRK04885 ppnK inorganic polyph 30.6 44 0.00095 30.3 2.7 26 366-391 38-69 (265)
332 PF05728 UPF0227: Uncharacteri 30.6 97 0.0021 26.4 4.7 43 109-155 49-92 (187)
333 PLN00016 RNA-binding protein; 30.5 61 0.0013 31.0 3.9 38 3-43 50-89 (378)
334 PF04493 Endonuclease_5: Endon 30.4 78 0.0017 27.5 4.1 42 106-151 76-124 (206)
335 TIGR00730 conserved hypothetic 30.3 1.9E+02 0.004 24.5 6.3 32 358-390 93-133 (178)
336 PRK02910 light-independent pro 30.1 78 0.0017 32.0 4.7 26 123-151 362-387 (519)
337 cd07037 TPP_PYR_MenD Pyrimidin 30.0 47 0.001 27.6 2.6 25 366-390 63-93 (162)
338 PF02776 TPP_enzyme_N: Thiamin 29.9 1.6E+02 0.0035 24.5 5.9 28 364-391 65-98 (172)
339 PRK13768 GTPase; Provisional 29.8 90 0.002 28.1 4.6 37 7-44 4-40 (253)
340 TIGR00640 acid_CoA_mut_C methy 29.7 1.6E+02 0.0035 23.4 5.5 39 4-43 1-39 (132)
341 PRK13982 bifunctional SbtC-lik 29.7 90 0.0019 31.0 4.8 46 5-52 70-115 (475)
342 PF05014 Nuc_deoxyrib_tr: Nucl 29.7 80 0.0017 24.1 3.7 37 356-392 56-98 (113)
343 TIGR00064 ftsY signal recognit 29.6 1.3E+02 0.0027 27.5 5.5 39 7-46 74-112 (272)
344 cd02040 NifH NifH gene encodes 29.6 96 0.0021 27.9 4.9 39 6-45 2-40 (270)
345 PRK14477 bifunctional nitrogen 29.4 4.5E+02 0.0097 28.9 10.4 36 108-152 380-415 (917)
346 PF07991 IlvN: Acetohydroxy ac 29.2 1E+02 0.0022 25.6 4.3 41 5-51 4-46 (165)
347 PF00731 AIRC: AIR carboxylase 29.1 2.5E+02 0.0055 23.0 6.5 85 282-396 3-91 (150)
348 CHL00076 chlB photochlorophyll 29.0 82 0.0018 31.8 4.6 26 123-151 374-399 (513)
349 COG2099 CobK Precorrin-6x redu 29.0 1.9E+02 0.0041 26.0 6.2 41 105-151 184-229 (257)
350 PRK08939 primosomal protein Dn 29.0 92 0.002 29.0 4.6 45 6-51 157-201 (306)
351 cd06559 Endonuclease_V Endonuc 29.0 61 0.0013 28.2 3.2 41 107-151 81-128 (208)
352 COG1737 RpiR Transcriptional r 29.0 1.8E+02 0.0038 26.6 6.4 38 355-392 171-213 (281)
353 PRK13604 luxD acyl transferase 28.9 1.1E+02 0.0024 28.4 5.1 35 5-40 36-70 (307)
354 PRK04940 hypothetical protein; 28.8 1.5E+02 0.0033 25.1 5.4 31 124-154 61-92 (180)
355 PF03446 NAD_binding_2: NAD bi 28.8 73 0.0016 26.3 3.6 31 5-41 1-31 (163)
356 TIGR02990 ectoine_eutA ectoine 28.6 4.1E+02 0.0088 23.7 8.4 103 19-156 105-218 (239)
357 PRK00090 bioD dithiobiotin syn 28.5 3.9E+02 0.0084 23.1 12.1 33 8-41 2-35 (222)
358 PTZ00445 p36-lilke protein; Pr 28.3 4.1E+02 0.0089 23.3 8.3 29 17-46 74-103 (219)
359 cd03466 Nitrogenase_NifN_2 Nit 28.1 91 0.002 30.6 4.6 26 123-151 372-397 (429)
360 COG3349 Uncharacterized conser 27.9 65 0.0014 31.9 3.5 31 6-42 1-31 (485)
361 PRK14092 2-amino-4-hydroxy-6-h 27.7 1.5E+02 0.0031 24.7 5.0 30 278-307 6-35 (163)
362 TIGR02482 PFKA_ATP 6-phosphofr 27.7 59 0.0013 30.1 3.0 37 358-394 86-126 (301)
363 PRK04761 ppnK inorganic polyph 27.5 52 0.0011 29.5 2.6 26 366-391 28-57 (246)
364 TIGR01278 DPOR_BchB light-inde 27.4 94 0.002 31.3 4.7 27 123-152 364-390 (511)
365 PRK13234 nifH nitrogenase redu 27.2 1.2E+02 0.0027 27.9 5.1 38 6-44 5-42 (295)
366 cd01981 Pchlide_reductase_B Pc 27.1 99 0.0022 30.3 4.7 27 123-152 370-396 (430)
367 KOG2836 Protein tyrosine phosp 26.9 3E+02 0.0066 22.0 6.2 55 4-74 15-71 (173)
368 cd03789 GT1_LPS_heptosyltransf 26.8 4.2E+02 0.009 23.9 8.6 31 20-51 140-170 (279)
369 PLN02650 dihydroflavonol-4-red 26.7 1.3E+02 0.0029 28.3 5.5 37 1-42 1-37 (351)
370 cd01976 Nitrogenase_MoFe_alpha 26.7 80 0.0017 30.9 3.9 26 123-151 369-394 (421)
371 PRK07236 hypothetical protein; 26.6 80 0.0017 30.3 4.0 33 3-41 4-36 (386)
372 PRK13230 nitrogenase reductase 26.4 1.2E+02 0.0027 27.5 5.0 37 6-43 2-38 (279)
373 PF00448 SRP54: SRP54-type pro 26.4 1E+02 0.0022 26.5 4.1 38 8-46 4-41 (196)
374 PF00070 Pyr_redox: Pyridine n 26.1 1.1E+02 0.0023 21.6 3.6 22 21-43 10-31 (80)
375 cd01965 Nitrogenase_MoFe_beta_ 26.1 97 0.0021 30.4 4.4 26 123-151 371-396 (428)
376 PF07015 VirC1: VirC1 protein; 26.0 1.9E+02 0.0041 25.7 5.6 43 8-51 4-47 (231)
377 PF03796 DnaB_C: DnaB-like hel 25.7 1.7E+02 0.0037 26.2 5.8 43 8-51 22-65 (259)
378 PRK14618 NAD(P)H-dependent gly 25.7 1E+02 0.0023 28.8 4.5 33 5-43 4-36 (328)
379 COG2210 Peroxiredoxin family p 25.5 1.7E+02 0.0037 23.5 4.8 32 10-42 8-39 (137)
380 TIGR01918 various_sel_PB selen 25.5 90 0.002 30.2 3.8 43 103-151 62-114 (431)
381 PRK07449 2-succinyl-5-enolpyru 25.4 2.4E+02 0.0052 28.8 7.4 25 366-390 75-105 (568)
382 PRK12311 rpsB 30S ribosomal pr 25.4 4.8E+02 0.011 24.5 8.5 33 123-155 152-186 (326)
383 TIGR01917 gly_red_sel_B glycin 25.4 90 0.0019 30.2 3.8 44 102-151 61-114 (431)
384 KOG3076 5'-phosphoribosylglyci 25.2 1.6E+02 0.0036 25.0 4.8 49 362-412 36-92 (206)
385 cd03115 SRP The signal recogni 25.1 1.8E+02 0.004 24.0 5.5 39 8-47 3-41 (173)
386 PRK00771 signal recognition pa 25.0 1.6E+02 0.0035 29.0 5.6 41 6-47 96-136 (437)
387 TIGR00147 lipid kinase, YegS/R 24.9 2.9E+02 0.0063 25.2 7.2 26 366-391 60-91 (293)
388 PRK05784 phosphoribosylamine-- 24.8 4.3E+02 0.0094 26.5 8.7 32 6-42 1-33 (486)
389 PRK07819 3-hydroxybutyryl-CoA 24.7 97 0.0021 28.5 3.9 38 1-44 1-38 (286)
390 PRK08181 transposase; Validate 24.7 1.1E+02 0.0024 27.9 4.2 42 5-47 106-147 (269)
391 PRK12377 putative replication 24.6 1.2E+02 0.0026 27.3 4.3 44 6-50 102-145 (248)
392 cd01983 Fer4_NifH The Fer4_Nif 24.6 1.8E+02 0.0038 20.6 4.8 33 8-41 2-34 (99)
393 cd03793 GT1_Glycogen_synthase_ 24.5 71 0.0015 32.5 3.1 37 354-392 467-507 (590)
394 TIGR01007 eps_fam capsular exo 24.5 1.8E+02 0.0039 24.9 5.4 41 6-47 17-59 (204)
395 PRK10490 sensor protein KdpD; 24.4 1.2E+02 0.0025 33.2 5.0 40 5-45 24-63 (895)
396 PF09334 tRNA-synt_1g: tRNA sy 24.2 71 0.0015 30.9 3.1 29 14-43 14-45 (391)
397 cd01452 VWA_26S_proteasome_sub 24.1 4.2E+02 0.009 22.6 7.3 61 6-72 108-173 (187)
398 PF01380 SIS: SIS domain SIS d 24.1 2.4E+02 0.0051 21.7 5.7 36 15-51 62-97 (131)
399 PRK07952 DNA replication prote 24.1 1.2E+02 0.0027 27.1 4.3 42 7-49 101-142 (244)
400 cd05005 SIS_PHI Hexulose-6-pho 24.1 2.6E+02 0.0057 23.3 6.3 33 359-391 73-110 (179)
401 PRK13059 putative lipid kinase 24.1 3.5E+02 0.0075 24.9 7.5 26 366-391 59-90 (295)
402 cd01124 KaiC KaiC is a circadi 24.0 2E+02 0.0044 23.9 5.6 42 8-50 2-43 (187)
403 PF12695 Abhydrolase_5: Alpha/ 24.0 1.4E+02 0.003 23.3 4.4 33 9-42 2-34 (145)
404 COG1763 MobB Molybdopterin-gua 23.9 1.6E+02 0.0034 24.5 4.6 39 6-45 2-41 (161)
405 TIGR01285 nifN nitrogenase mol 23.8 1.2E+02 0.0027 29.8 4.6 26 123-151 373-398 (432)
406 PLN02891 IMP cyclohydrolase 23.7 2.9E+02 0.0062 27.9 6.9 87 21-132 34-123 (547)
407 PRK06526 transposase; Provisio 23.7 71 0.0015 28.8 2.8 41 5-46 98-138 (254)
408 COG0859 RfaF ADP-heptose:LPS h 23.7 4.8E+02 0.01 24.4 8.5 100 6-154 176-280 (334)
409 PF07131 DUF1382: Protein of u 23.5 68 0.0015 21.3 1.8 11 64-74 22-32 (61)
410 TIGR02853 spore_dpaA dipicolin 23.4 2.7E+02 0.0058 25.6 6.5 24 20-44 11-34 (287)
411 TIGR02329 propionate_PrpR prop 23.3 1.4E+02 0.003 30.3 5.0 44 104-153 129-172 (526)
412 PRK08673 3-deoxy-7-phosphohept 23.3 4.7E+02 0.01 24.7 8.2 31 383-414 262-298 (335)
413 cd01141 TroA_d Periplasmic bin 23.2 1.2E+02 0.0027 25.3 4.1 40 105-151 58-99 (186)
414 cd02033 BchX Chlorophyllide re 23.0 1.8E+02 0.0039 27.4 5.3 41 5-46 31-71 (329)
415 PRK14106 murD UDP-N-acetylmura 23.0 1.1E+02 0.0024 30.0 4.3 38 1-44 1-38 (450)
416 COG1893 ApbA Ketopantoate redu 23.0 1.9E+02 0.0041 26.9 5.5 40 6-51 1-40 (307)
417 PF03641 Lysine_decarbox: Poss 22.9 2.4E+02 0.0052 22.4 5.4 35 356-391 48-92 (133)
418 PF02780 Transketolase_C: Tran 22.9 1.5E+02 0.0033 22.9 4.3 35 4-41 8-42 (124)
419 PLN02695 GDP-D-mannose-3',5'-e 22.8 1.6E+02 0.0035 28.1 5.2 34 4-42 20-53 (370)
420 PRK14077 pnk inorganic polypho 22.7 78 0.0017 29.1 2.8 31 359-391 62-96 (287)
421 COG2874 FlaH Predicted ATPases 22.6 1.7E+02 0.0037 25.7 4.6 36 15-51 38-74 (235)
422 cd00763 Bacterial_PFK Phosphof 22.6 84 0.0018 29.4 3.1 37 358-394 87-126 (317)
423 KOG3062 RNA polymerase II elon 22.5 1.8E+02 0.004 25.7 4.8 30 6-36 2-31 (281)
424 PRK06222 ferredoxin-NADP(+) re 22.4 2.1E+02 0.0045 26.1 5.6 37 6-45 99-135 (281)
425 cd00861 ProRS_anticodon_short 22.4 1.8E+02 0.004 20.9 4.4 35 6-41 2-38 (94)
426 PLN02316 synthase/transferase 22.4 7.4E+02 0.016 27.6 10.3 46 344-391 899-951 (1036)
427 PRK11199 tyrA bifunctional cho 22.3 7E+02 0.015 23.9 10.6 33 5-43 98-131 (374)
428 PRK09739 hypothetical protein; 22.3 2.1E+02 0.0046 24.4 5.4 36 5-41 3-41 (199)
429 PF06564 YhjQ: YhjQ protein; 22.2 1.7E+02 0.0037 26.2 4.8 37 6-43 2-39 (243)
430 TIGR01286 nifK nitrogenase mol 22.2 1.3E+02 0.0027 30.5 4.4 26 123-151 437-462 (515)
431 PF03721 UDPG_MGDP_dh_N: UDP-g 22.1 1.5E+02 0.0033 25.1 4.4 38 6-51 1-38 (185)
432 COG2084 MmsB 3-hydroxyisobutyr 22.0 1.3E+02 0.0028 27.7 4.0 39 7-51 2-42 (286)
433 TIGR02483 PFK_mixed phosphofru 21.9 90 0.002 29.3 3.1 36 359-394 90-128 (324)
434 PRK00094 gpsA NAD(P)H-dependen 21.8 1.2E+02 0.0026 28.2 4.0 32 6-43 2-33 (325)
435 PF03720 UDPG_MGDP_dh_C: UDP-g 21.7 1.2E+02 0.0025 23.0 3.2 31 20-51 17-47 (106)
436 PRK06718 precorrin-2 dehydroge 21.7 1.9E+02 0.0041 25.0 4.9 35 4-44 9-43 (202)
437 PRK05708 2-dehydropantoate 2-r 21.6 1.1E+02 0.0024 28.3 3.8 33 5-43 2-34 (305)
438 PRK05632 phosphate acetyltrans 21.6 9.6E+02 0.021 25.3 11.2 34 7-41 4-38 (684)
439 PF02016 Peptidase_S66: LD-car 21.6 99 0.0021 28.4 3.3 74 292-392 46-121 (284)
440 PRK14569 D-alanyl-alanine synt 21.6 1.8E+02 0.004 26.7 5.2 38 4-42 2-43 (296)
441 PRK13886 conjugal transfer pro 21.5 2.2E+02 0.0047 25.5 5.3 42 5-47 3-44 (241)
442 PRK14571 D-alanyl-alanine synt 21.3 4E+02 0.0087 24.4 7.4 34 282-315 3-39 (299)
443 PRK03708 ppnK inorganic polyph 21.3 74 0.0016 29.1 2.4 27 366-392 60-89 (277)
444 PF05818 TraT: Enterobacterial 21.3 1.6E+02 0.0034 25.7 4.2 41 272-312 13-54 (215)
445 PRK14974 cell division protein 21.2 2.1E+02 0.0045 27.0 5.4 40 6-46 141-180 (336)
446 PRK07710 acetolactate synthase 21.1 94 0.002 31.8 3.4 27 364-390 79-111 (571)
447 PRK11914 diacylglycerol kinase 21.1 3.2E+02 0.007 25.2 6.7 80 281-390 12-95 (306)
448 PTZ00318 NADH dehydrogenase-li 21.1 1.1E+02 0.0025 29.8 3.9 36 3-44 8-43 (424)
449 PRK01911 ppnK inorganic polyph 20.9 98 0.0021 28.6 3.1 32 358-391 61-96 (292)
450 TIGR03018 pepcterm_TyrKin exop 20.9 2E+02 0.0044 24.7 5.0 43 4-46 33-77 (207)
451 PRK11064 wecC UDP-N-acetyl-D-m 20.9 1.4E+02 0.0031 29.1 4.4 32 5-42 3-34 (415)
452 cd01122 GP4d_helicase GP4d_hel 20.7 2.2E+02 0.0047 25.6 5.4 43 7-50 32-75 (271)
453 PRK14116 gpmA phosphoglyceromu 20.7 57 0.0012 28.8 1.5 21 366-386 178-198 (228)
454 PRK00652 lpxK tetraacyldisacch 20.6 1.6E+02 0.0035 27.6 4.6 33 11-44 57-89 (325)
455 PRK13235 nifH nitrogenase redu 20.5 1.7E+02 0.0038 26.4 4.7 37 7-44 3-39 (274)
456 PRK00207 sulfur transfer compl 20.4 1.9E+02 0.0041 22.9 4.3 32 9-41 6-39 (128)
457 PRK06270 homoserine dehydrogen 20.3 5.9E+02 0.013 24.1 8.3 58 354-412 80-149 (341)
458 TIGR00110 ilvD dihydroxy-acid 20.3 6.5E+02 0.014 25.6 8.7 32 123-154 89-124 (535)
459 COG0300 DltE Short-chain dehyd 20.2 2.1E+02 0.0046 25.9 5.0 38 1-42 1-38 (265)
460 TIGR01425 SRP54_euk signal rec 20.2 1.9E+02 0.0041 28.4 5.0 39 7-46 102-140 (429)
461 PRK08163 salicylate hydroxylas 20.1 1.3E+02 0.0028 28.8 4.0 34 1-41 1-34 (396)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.8e-64 Score=484.87 Aligned_cols=402 Identities=33% Similarity=0.624 Sum_probs=313.8
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPP 82 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (427)
..++||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+++.... . ++++++.+|++. .+++|+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~--~-----~~i~~~~lp~P~-~~~lPd 77 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSK--H-----PSIETLVLPFPS-HPSIPS 77 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhccc--C-----CCeeEEeCCCCC-cCCCCC
Confidence 45799999999999999999999999999 99999999999988777654211 1 458999888763 467887
Q ss_pred CCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 83 NTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
+.+.....+......+......+.+.+.+++++.. .+++|||+|.+.+|+..+|+++|||++.|+++++..+..++
T Consensus 78 G~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~ 153 (477)
T PLN02863 78 GVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHP----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMY 153 (477)
T ss_pred CCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCC----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 76655444433334566666677888888887642 35899999999999999999999999999999999999988
Q ss_pred hhhhcCCCCCC--C-CCCC---CCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhH
Q 035495 163 SMWLNLPQKKT--N-SDEF---TLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGA 236 (427)
Q Consensus 163 ~~~~~~p~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 236 (427)
+.+...+.... . .+.. .+|+++. ++..+++.+.............+.+.......++++++|||++||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 154 SLWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred HHhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 87655443211 1 1112 3566665 777788876653322223334444444445566789999999999999
Q ss_pred HHHHHhcCC-CCEEEeCccCCCCCCC-------C--CCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHh
Q 035495 237 LQWLRNYIK-LPVWAIGPLLPQSYLK-------K--SKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEA 306 (427)
Q Consensus 237 ~~~~~~~~~-~~~~~vGp~~~~~~~~-------~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~ 306 (427)
+++++..++ ++++.|||++...... . ...++++.+|||.+++++||||||||+...+.+++++++.+++.
T Consensus 231 ~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 231 LEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEK 310 (477)
T ss_pred HHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHh
Confidence 999988765 6899999997532100 0 11246799999999889999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcE
Q 035495 307 SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPT 386 (427)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~ 386 (427)
++++|||+++...+. +.....+|+++.++.. ++|+++.+|+||.+||+|++|++|||||||||++||+++||||
T Consensus 311 ~~~~flw~~~~~~~~----~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 384 (477)
T PLN02863 311 SGVHFIWCVKEPVNE----ESDYSNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPM 384 (477)
T ss_pred CCCcEEEEECCCccc----ccchhhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCE
Confidence 999999999854200 0012348889988888 8899999999999999999999999999999999999999999
Q ss_pred EeccCcccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 387 IGWPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 387 v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
|++|++.||+.||+++++.||+|+++..++.+.+++++|+
T Consensus 385 l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~ 424 (477)
T PLN02863 385 LAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELA 424 (477)
T ss_pred EeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHH
Confidence 9999999999999997654899999975444456666654
No 2
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6e-63 Score=476.03 Aligned_cols=404 Identities=29% Similarity=0.467 Sum_probs=303.8
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPP 82 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (427)
.+++||+++|+|++||++|++.||+.|+. ||+.|||++++.+...+.+... ... .+++++.+|+++ .+++|+
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~-~~~-----~~i~~~~lp~p~-~dglp~ 75 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPS-QLS-----SSITLVSFPLPS-VPGLPS 75 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccc-cCC-----CCeeEEECCCCc-cCCCCC
Confidence 35689999999999999999999999999 9999999999988776664211 111 459999999874 357876
Q ss_pred CCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 83 NTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
+.+...+.+......+......+.+.+++++++.. ++|||+|.++.|+..+|+++|||++.|+++++..++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~ 149 (472)
T PLN02670 76 SAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSK------PDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIG 149 (472)
T ss_pred CcccccccchhhHHHHHHHHHHhHHHHHHHHHhCC------CcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHh
Confidence 65543333211112344455677888888887654 899999999999999999999999999999998887765
Q ss_pred hhhhcCCCC--CCCCCCC-CCCCC-C--CCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhH
Q 035495 163 SMWLNLPQK--KTNSDEF-TLPGF-P--ERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGA 236 (427)
Q Consensus 163 ~~~~~~p~~--~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 236 (427)
+........ ....+.. .+|+. | ..+.++..+++.+.............+.+.......++++++|||++||+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~ 229 (472)
T PLN02670 150 PPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEW 229 (472)
T ss_pred hhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHH
Confidence 442211110 0111111 23433 2 1123455677765542221212222333443455678899999999999999
Q ss_pred HHHHHhcCCCCEEEeCccCCCC-C-CCCC----CCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCc
Q 035495 237 LQWLRNYIKLPVWAIGPLLPQS-Y-LKKS----KNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKS 310 (427)
Q Consensus 237 ~~~~~~~~~~~~~~vGp~~~~~-~-~~~~----~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 310 (427)
+++++..++++++.|||+.... . .... ...+++.+|||.+++++||||||||+..++.+++++++.+|+.++++
T Consensus 230 l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 230 FDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred HHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 9999886667899999997531 0 0111 11257999999998899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEecc
Q 035495 311 FLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWP 390 (427)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P 390 (427)
|||+++...+.+ ......+|+++.++++ .+++++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 310 FlWv~r~~~~~~---~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 310 FFWVLRNEPGTT---QNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred EEEEEcCCcccc---cchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 999998632100 0112358999999988 88999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHhhhceeEEEecCC-Cccccccccc
Q 035495 391 IAAEQTYNSKMLVEEMGVAVEMTRGV-QSTIVGHEVK 426 (427)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~l~~~~-~~~~~~~~i~ 426 (427)
++.||+.||+++++ +|+|+.+++.+ ++.+++|+|+
T Consensus 385 ~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~ 420 (472)
T PLN02670 385 VLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVA 420 (472)
T ss_pred chhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHH
Confidence 99999999999999 69999998644 4568888875
No 3
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=8e-63 Score=471.34 Aligned_cols=395 Identities=27% Similarity=0.429 Sum_probs=302.2
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
|++.++||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.+.. ... ....+++..+|. .+++
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~~--~~~---~~~~v~~~~~p~---~~gl 71 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHLN--LFP---HNIVFRSVTVPH---VDGL 71 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhcccc--cCC---CCceEEEEECCC---cCCC
Confidence 8889999999999999999999999999999 999999999998876665421 111 001266666663 3578
Q ss_pred CCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHH
Q 035495 81 PPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLA 160 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (427)
|++.+.+.+.+......+......+.+.+++++++.. +||||+|. ..|+.++|+++|||.+.|+++++..++.
T Consensus 72 p~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~------~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~ 144 (453)
T PLN02764 72 PVGTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVE------PDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIAS 144 (453)
T ss_pred CCcccccccCChhHHHHHHHHHHHhHHHHHHHHHhCC------CCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHH
Confidence 7775554444432334555666677888888887753 89999995 8899999999999999999999988777
Q ss_pred HHhhhhcCCCCCCCCCCCCCCCCCCC-cccchhccchhhhhc--CCCCchhhhhhhhhhcccccceEEEcCccccChhHH
Q 035495 161 YTSMWLNLPQKKTNSDEFTLPGFPER-CHFHITQLHKYLRMA--GGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGAL 237 (427)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 237 (427)
+.. +.... ....|++|.. +.++..+++.+.... .....+..+..........++++++|||++||+.++
T Consensus 145 ~~~-----~~~~~---~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~ 216 (453)
T PLN02764 145 MLV-----PGGEL---GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFC 216 (453)
T ss_pred Hhc-----ccccC---CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHH
Confidence 653 11000 0123666631 124555555532211 111123344444435566788999999999999999
Q ss_pred HHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 035495 238 QWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITP 317 (427)
Q Consensus 238 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 317 (427)
++++...+++++.|||++.... .....++++.+|||.+++++||||||||+..++.+++.+++.+|+.++.+|+|+++.
T Consensus 217 ~~~~~~~~~~v~~VGPL~~~~~-~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 217 DYIEKHCRKKVLLTGPVFPEPD-KTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred HHHHhhcCCcEEEeccCccCcc-ccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9998755578999999975431 111235689999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchh
Q 035495 318 PVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTY 397 (427)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 397 (427)
..+.+ .....+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.
T Consensus 296 ~~~~~----~~~~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 296 PRGSS----TIQEALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred CCCCc----chhhhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 42111 112458999999998 889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhceeEEEecCCCccccccccc
Q 035495 398 NSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 398 na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
||+++++.+|+|+.+++++.+.+++|+|+
T Consensus 370 na~~l~~~~g~gv~~~~~~~~~~~~e~i~ 398 (453)
T PLN02764 370 NTRLLSDELKVSVEVAREETGWFSKESLR 398 (453)
T ss_pred HHHHHHHHhceEEEeccccCCccCHHHHH
Confidence 99999654799999875433467777765
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-63 Score=474.19 Aligned_cols=388 Identities=26% Similarity=0.393 Sum_probs=297.6
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPN 83 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (427)
.++||+++|+|++||++|++.||+.|+. +||+|||++++.+...+.+.+. .+ .++++..++++ ..++++++
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~a--~~-----~~i~~~~l~~p-~~dgLp~g 73 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHNL--FP-----DSIVFHPLTIP-PVNGLPAG 73 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhcccC--CC-----CceEEEEeCCC-CccCCCCC
Confidence 5689999999999999999999999999 9999999999988877766432 11 35778877754 23577776
Q ss_pred CCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHHh
Q 035495 84 TENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTS 163 (427)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 163 (427)
.+...+........+......+.+.+++++++.. +||||+| ++.|+..+|+++|||++.|+++++..+. +.+
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~------~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~ 145 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRALR------PDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTH 145 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhCC------CeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHc
Confidence 5433322222223344555677888888887654 8999999 5789999999999999999999887654 332
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCC-cccchhccchhhhhcCCCCc-hhhhhhhhhhcccccceEEEcCccccChhHHHHHH
Q 035495 164 MWLNLPQKKTNSDEFTLPGFPER-CHFHITQLHKYLRMAGGSDD-WSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLR 241 (427)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 241 (427)
. +.... ...+|++|.. +.++..+++.+ ..... +..+.....+....++++++|||.+||+.++++++
T Consensus 146 ~----~~~~~---~~~~pglp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~ 214 (442)
T PLN02208 146 V----PGGKL---GVPPPGYPSSKVLFRENDAHAL----ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYIS 214 (442)
T ss_pred c----Ccccc---CCCCCCCCCcccccCHHHcCcc----cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHH
Confidence 2 21110 1224666642 23455566642 11111 22222233345567889999999999999999999
Q ss_pred hcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 035495 242 NYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGF 321 (427)
Q Consensus 242 ~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 321 (427)
+.++++++.|||++.... ....+++++.+|||.+++++||||||||+..++.+++.+++.+++.++.+++|+++...+.
T Consensus 215 ~~~~~~v~~vGpl~~~~~-~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 215 RQYHKKVLLTGPMFPEPD-TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred hhcCCCEEEEeecccCcC-CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 887789999999987541 1234678999999999889999999999999999999999999888889999998854210
Q ss_pred CcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHH
Q 035495 322 DLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKM 401 (427)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 401 (427)
+.....+|++|.++++ .+|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||++
T Consensus 294 ----~~~~~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~ 367 (442)
T PLN02208 294 ----STVQEGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRL 367 (442)
T ss_pred ----cchhhhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHH
Confidence 0112358999999998 8899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhceeEEEecCCCccccccccc
Q 035495 402 LVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 402 v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
+++.+|+|+.+++++++.+++|+|+
T Consensus 368 ~~~~~g~gv~~~~~~~~~~~~~~l~ 392 (442)
T PLN02208 368 MTEEFEVSVEVSREKTGWFSKESLS 392 (442)
T ss_pred HHHHhceeEEeccccCCcCcHHHHH
Confidence 7764799999987544568888775
No 5
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-61 Score=468.69 Aligned_cols=406 Identities=33% Similarity=0.605 Sum_probs=307.6
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCC--CCCCCCCCceeEEEcCCCCCCCCCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSA--NPNSPEKFNINLVELPFCSSDHGLP 81 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (427)
++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.+..... .+ .+++|+.+|++...+++|
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~~~-----~~i~~~~lp~p~~~dglp 80 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARESG-----LPIRLVQIPFPCKEVGLP 80 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccccC-----CCeEEEEcCCCCccCCCC
Confidence 4579999999999999999999999999 999999999998876665533211 11 249999999875556888
Q ss_pred CCCCCCccchh-hHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHH
Q 035495 82 PNTENTENLSL-DLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLA 160 (427)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (427)
++.+.....+. .....+...+..+.+.+.+++++.. .+++|||+|.++.|+..+|+++|||.+.|++++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~----~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~ 156 (491)
T PLN02534 81 IGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAK----PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLS 156 (491)
T ss_pred CCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcC----CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHH
Confidence 77655443332 2333455555667788888887532 358999999999999999999999999999999888776
Q ss_pred HHhhhhcCCCCC--CCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHH
Q 035495 161 YTSMWLNLPQKK--TNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQ 238 (427)
Q Consensus 161 ~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 238 (427)
+++.+.+.+... .......+|+++....++..+++...... ..+..+..........++++++|||++||+.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 157 SHNIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred HHHHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHH
Confidence 655444333211 11223457787754456667777653221 1122233233222345678999999999999999
Q ss_pred HHHhcCCCCEEEeCccCCCCCC-------C-CCC-CchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCC
Q 035495 239 WLRNYIKLPVWAIGPLLPQSYL-------K-KSK-NPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAK 309 (427)
Q Consensus 239 ~~~~~~~~~~~~vGp~~~~~~~-------~-~~~-~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 309 (427)
+++..++++++.|||++..... . ... .+++|.+|||.+++++||||||||...+.++++.+++.+|+.++.
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred HHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 9988777789999999753210 0 011 235699999999889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEec
Q 035495 310 SFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~ 389 (427)
+|||+++..... .+.....+|+++.++.. ++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++
T Consensus 314 ~flW~~r~~~~~---~~~~~~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~ 388 (491)
T PLN02534 314 PFIWVIKTGEKH---SELEEWLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITW 388 (491)
T ss_pred CEEEEEecCccc---cchhhhcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEec
Confidence 999999853100 01111236789988877 8899999999999999999999999999999999999999999999
Q ss_pred cCcccchhhHHHHHhhhceeEEEecC-------CC--c-ccccccccC
Q 035495 390 PIAAEQTYNSKMLVEEMGVAVEMTRG-------VQ--S-TIVGHEVKN 427 (427)
Q Consensus 390 P~~~DQ~~na~~v~~~lG~G~~l~~~-------~~--~-~~~~~~i~~ 427 (427)
|++.||+.||+++++.||+|+++..+ ++ + .+++|||++
T Consensus 389 P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~ 436 (491)
T PLN02534 389 PLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEK 436 (491)
T ss_pred cccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHH
Confidence 99999999999998779999998521 11 2 588888763
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-61 Score=463.86 Aligned_cols=382 Identities=26% Similarity=0.468 Sum_probs=296.0
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
|++++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.... . .+++|+.++ +++
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~----~-----~~i~~~~ip-----dgl 65 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDP----S-----SPISIATIS-----DGY 65 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCC----C-----CCEEEEEcC-----CCC
Confidence 7888899999999999999999999999999 999999999998765553311 1 459999886 477
Q ss_pred CCC-CCCCccchhhHHHHHHHHh-cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHH
Q 035495 81 PPN-TENTENLSLDLIINFFTSS-QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVT 158 (427)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 158 (427)
|++ .+.... ...++..+ ....+.++++++.... ...+.+|||+|.+.+|+..+|+++|||.+.|+++++..+
T Consensus 66 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~ 139 (449)
T PLN02173 66 DQGGFSSAGS-----VPEYLQNFKTFGSKTVADIIRKHQS-TDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVN 139 (449)
T ss_pred CCcccccccC-----HHHHHHHHHHhhhHHHHHHHHHhhc-cCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHH
Confidence 763 232211 12233333 4678888888887532 112349999999999999999999999999999988877
Q ss_pred HHHHhhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHH
Q 035495 159 LAYTSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQ 238 (427)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 238 (427)
..+++.... .......+|++|. ++.++++.++............+.+.......++++++|||++||+.+++
T Consensus 140 ~~~~~~~~~-----~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 211 (449)
T PLN02173 140 YINYLSYIN-----NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENE 211 (449)
T ss_pred HHHHhHHhc-----cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHH
Confidence 665533211 0112244778776 77788887664322222333434444556677889999999999999999
Q ss_pred HHHhcCCCCEEEeCccCCCC-------CCCC-C------CCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHH
Q 035495 239 WLRNYIKLPVWAIGPLLPQS-------YLKK-S------KNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGL 304 (427)
Q Consensus 239 ~~~~~~~~~~~~vGp~~~~~-------~~~~-~------~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~ 304 (427)
+++.. ++++.|||+++.. .... . ..++++.+||+.+++++||||||||+..++.+++++++.+|
T Consensus 212 ~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL 289 (449)
T PLN02173 212 LLSKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI 289 (449)
T ss_pred HHHhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh
Confidence 99764 4799999997421 0000 0 12346999999998899999999999999999999999999
Q ss_pred HhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCC
Q 035495 305 EASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
++.+|+|++.... ...+|+++.++.. +.|+++.+|+||.+||+|++|++|||||||||++||+++||
T Consensus 290 --s~~~flWvvr~~~---------~~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GV 356 (449)
T PLN02173 290 --SNFSYLWVVRASE---------ESKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGV 356 (449)
T ss_pred --cCCCEEEEEeccc---------hhcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCC
Confidence 6788999998531 1247888888877 77888889999999999999999999999999999999999
Q ss_pred cEEeccCcccchhhHHHHHhhhceeEEEecCC-Cccccccccc
Q 035495 385 PTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV-QSTIVGHEVK 426 (427)
Q Consensus 385 P~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~-~~~~~~~~i~ 426 (427)
|||++|++.||+.||+++++.||+|+.++.++ ++.+++|+|+
T Consensus 357 P~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~ 399 (449)
T PLN02173 357 PMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIE 399 (449)
T ss_pred CEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHH
Confidence 99999999999999999998679999998654 3567888775
No 7
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1e-61 Score=466.96 Aligned_cols=389 Identities=25% Similarity=0.376 Sum_probs=295.0
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
|+ .++||+++|+|++||++|++.||+.|+. +|++|||++++.+...+++.+. .. .+++|..++++ ..+++
T Consensus 1 ~~-~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~--~~-----~~i~~~~i~lP-~~dGL 70 (446)
T PLN00414 1 MG-SKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNL--FP-----DSIVFEPLTLP-PVDGL 70 (446)
T ss_pred CC-CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhccccc--CC-----CceEEEEecCC-CcCCC
Confidence 44 4589999999999999999999999999 9999999999988777765432 11 35888777765 24578
Q ss_pred CCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHH
Q 035495 81 PPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLA 160 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (427)
|++.+...+........+......+.+.++++++.. ++||||+|. ++|+..+|+++|||++.|+++++.....
T Consensus 71 P~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 71 PFGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred CCcccccccchhhHHHHHHHHHHHHHHHHHHHHhcC------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 776543333322212334455556666777766543 389999995 7899999999999999999999988877
Q ss_pred HHhhhhcCCCCCCCCCCCCCCCCCCC-cccchhcc--chhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHH
Q 035495 161 YTSMWLNLPQKKTNSDEFTLPGFPER-CHFHITQL--HKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGAL 237 (427)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 237 (427)
+.++... ....+|++|.. +.++..+. +.+.. .....+....+....++++++|||.+||+.++
T Consensus 144 ~~~~~~~--------~~~~~pg~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 209 (446)
T PLN00414 144 VLAPRAE--------LGFPPPDYPLSKVALRGHDANVCSLFA------NSHELFGLITKGLKNCDVVSIRTCVELEGNLC 209 (446)
T ss_pred HhCcHhh--------cCCCCCCCCCCcCcCchhhcccchhhc------ccHHHHHHHHHhhccCCEEEEechHHHHHHHH
Confidence 6653211 01224555531 11222221 11111 01123334445566788999999999999999
Q ss_pred HHHHhcCCCCEEEeCccCCCCCCC-CCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEc
Q 035495 238 QWLRNYIKLPVWAIGPLLPQSYLK-KSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVIT 316 (427)
Q Consensus 238 ~~~~~~~~~~~~~vGp~~~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 316 (427)
++++..++++++.|||+....... ....++++.+|||.+++++||||||||...++.+++.+++.+|+.++.+|+|++.
T Consensus 210 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr 289 (446)
T PLN00414 210 DFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVM 289 (446)
T ss_pred HHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 999886667899999997543111 1122456999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccch
Q 035495 317 PPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQT 396 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~ 396 (427)
...+. +...+.+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+
T Consensus 290 ~~~~~----~~~~~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 290 PPKGS----STVQEALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred cCCCc----ccchhhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 64211 0112358999999998 88999989999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 397 YNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 397 ~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
.||+++++.+|+|+.+++++++.+++|+|+
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~ 393 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLR 393 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHH
Confidence 999999743799999976444567888775
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.5e-61 Score=465.17 Aligned_cols=395 Identities=29% Similarity=0.482 Sum_probs=299.5
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHG 79 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (427)
|-..++||+++|+|++||++|++.||+.|+ . +|++|||++++.+...+.+.... . .+++++.+|.++ .++
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~~--~-----~~i~~~~lp~p~-~~g 71 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFLN--S-----TGVDIVGLPSPD-ISG 71 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhcccc--C-----CCceEEECCCcc-ccC
Confidence 556788999999999999999999999998 7 89999999999887655332211 1 358999998753 345
Q ss_pred CCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHH
Q 035495 80 LPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTL 159 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (427)
+++... . . ...+......+.+.+++++++.. .+|+|||+|.++.|+.++|+++|||++.|+++++..++
T Consensus 72 lp~~~~---~-~---~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 140 (481)
T PLN02992 72 LVDPSA---H-V---VTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLG 140 (481)
T ss_pred CCCCCc---c-H---HHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHH
Confidence 542111 1 1 12233344567788888887752 35899999999999999999999999999999998876
Q ss_pred HHHhhhhc-CCCCC---CCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChh
Q 035495 160 AYTSMWLN-LPQKK---TNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPG 235 (427)
Q Consensus 160 ~~~~~~~~-~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 235 (427)
.+.+.+.. .+... ...+...+|+++. ++..+++..+.. ........+.+.......++++++|||++||+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 215 (481)
T PLN02992 141 VSIYYPTLDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLV--PDEPVYRDFVRHGLAYPKADGILVNTWEEMEPK 215 (481)
T ss_pred HHHhhhhhccccccccccCCCCcccCCCCc---cCHHHhhHhhcC--CCcHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 65544321 11110 0012245677765 666777753322 122334444555556677889999999999999
Q ss_pred HHHHHHhc------CCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCC
Q 035495 236 ALQWLRNY------IKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAK 309 (427)
Q Consensus 236 ~~~~~~~~------~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 309 (427)
++++++.. ..++++.|||++... .....++++.+|||.+++++||||||||...++.+++++++.+|+.+++
T Consensus 216 ~l~~l~~~~~~~~~~~~~v~~VGPl~~~~--~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 216 SLKSLQDPKLLGRVARVPVYPIGPLCRPI--QSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred HHHHHhhccccccccCCceEEecCccCCc--CCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 99998752 125799999998643 1123456799999999889999999999999999999999999999999
Q ss_pred cEEEEEcCCCCC-------Ccch----hhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHH
Q 035495 310 SFLWVITPPVGF-------DLRA----EFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLE 378 (427)
Q Consensus 310 ~~i~~~~~~~~~-------~~~~----~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~e 378 (427)
+|||+++..... +... +.....+|++|.++++ .+|+++.+|+||.+||+|++|++|||||||||++|
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 999999743100 0000 0012358899999999 89999999999999999999999999999999999
Q ss_pred HHhcCCcEEeccCcccchhhHHHHH-hhhceeEEEecCCCccccccccc
Q 035495 379 SLSQGLPTIGWPIAAEQTYNSKMLV-EEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 379 al~~GvP~v~~P~~~DQ~~na~~v~-~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
|+++|||||++|+++||+.||++++ + +|+|+.++.+ ++.+++|+|+
T Consensus 372 al~~GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~ 418 (481)
T PLN02992 372 SVVGGVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDP-KEVISRSKIE 418 (481)
T ss_pred HHHcCCCEEecCccchhHHHHHHHHHH-hCeeEEecCC-CCcccHHHHH
Confidence 9999999999999999999999995 7 7999999852 2467777764
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-60 Score=459.67 Aligned_cols=389 Identities=28% Similarity=0.471 Sum_probs=288.9
Q ss_pred CC--CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCC
Q 035495 1 MG--SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDH 78 (427)
Q Consensus 1 m~--~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 78 (427)
|+ +.++||+++|+|++||++|++.||+.|+. +|+.|||++++.+... .. ... .+++|..+| +
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~--~~---~~~-----~~i~~~~ip-----~ 64 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFS--PS---DDF-----TDFQFVTIP-----E 64 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccc--cc---cCC-----CCeEEEeCC-----C
Confidence 65 45689999999999999999999999999 9999999999876421 11 001 358888877 3
Q ss_pred CCCCCCCCCccchhhHHHHHHHHh-cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHH
Q 035495 79 GLPPNTENTENLSLDLIINFFTSS-QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYV 157 (427)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 157 (427)
++|++...... . . .+...+ ..+.+.++++++++....+.+++|||+|.+..|+.++|+++|||++.|++++++.
T Consensus 65 glp~~~~~~~~-~---~-~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~ 139 (451)
T PLN02410 65 SLPESDFKNLG-P---I-EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATA 139 (451)
T ss_pred CCCcccccccC-H---H-HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHH
Confidence 67653211111 1 1 222323 4667778888877642233457999999999999999999999999999999998
Q ss_pred HHHHHhhhhc------CCCCCC-CCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCcc
Q 035495 158 TLAYTSMWLN------LPQKKT-NSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAE 230 (427)
Q Consensus 158 ~~~~~~~~~~------~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (427)
+..+.++... .|.... ..+...+|+++. ++.++++..... ........+.... ....++++++|||+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~ 213 (451)
T PLN02410 140 FVCRSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTAS 213 (451)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChH
Confidence 8766654321 132211 112245777765 666666643221 1112222222222 34678899999999
Q ss_pred ccChhHHHHHHhcCCCCEEEeCccCCCCCC--CCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCC
Q 035495 231 DIEPGALQWLRNYIKLPVWAIGPLLPQSYL--KKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASA 308 (427)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~--~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~ 308 (427)
+||+.++++++...+++++.|||++..... .......++.+|||.+++++||||||||...++.+++++++.+|+.++
T Consensus 214 eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~ 293 (451)
T PLN02410 214 CLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSN 293 (451)
T ss_pred HhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcC
Confidence 999999999988777799999999854210 111223468999999988999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEe
Q 035495 309 KSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIG 388 (427)
Q Consensus 309 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~ 388 (427)
++|||+++.... ..+.....+|++|.++.. .++ .+.+|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 294 ~~FlWv~r~~~~---~~~~~~~~lp~~f~er~~--~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~ 367 (451)
T PLN02410 294 QQFLWVIRPGSV---RGSEWIESLPKEFSKIIS--GRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMIC 367 (451)
T ss_pred CCeEEEEccCcc---cccchhhcCChhHHHhcc--CCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEe
Confidence 999999985310 000111248999988876 554 55599999999999999999999999999999999999999
Q ss_pred ccCcccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 389 WPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 389 ~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
+|++.||+.||+++++.||+|+.++ +.+++|+|+
T Consensus 368 ~P~~~DQ~~na~~~~~~~~~G~~~~----~~~~~~~v~ 401 (451)
T PLN02410 368 KPFSSDQKVNARYLECVWKIGIQVE----GDLDRGAVE 401 (451)
T ss_pred ccccccCHHHHHHHHHHhCeeEEeC----CcccHHHHH
Confidence 9999999999999987579999996 356776664
No 10
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-60 Score=456.98 Aligned_cols=400 Identities=26% Similarity=0.446 Sum_probs=294.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCC--CEEEE--EeCCcchHHhhhhhc--CCCCCCCCCCceeEEEcCCCCCCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTG--FKITI--ANTPLNIQYLQNTIS--SANPNSPEKFNINLVELPFCSSDH 78 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~G--h~Vt~--~~~~~~~~~v~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 78 (427)
+.||+++|+|++||++|++.||+.|+. +| +.||+ ++++.+...+.+... .... ++++|+.+|...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~lp~~~--- 73 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSSSF-----PSITFHHLPAVT--- 73 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccCCC-----CCeEEEEcCCCC---
Confidence 469999999999999999999999999 98 55665 444443322222111 1111 469999888531
Q ss_pred CCCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHH
Q 035495 79 GLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVT 158 (427)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 158 (427)
..+..... . ......+........+.+.++++++.. +.+++|||+|.+..|+..+|+++|||.+.|+++++..+
T Consensus 74 ~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~ 147 (451)
T PLN03004 74 PYSSSSTS--R--HHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACL 147 (451)
T ss_pred CCCCcccc--c--cCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHH
Confidence 11121111 1 111123444445678888888887631 23469999999999999999999999999999999998
Q ss_pred HHHHhhhhc---CCCCC-CCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccCh
Q 035495 159 LAYTSMWLN---LPQKK-TNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEP 234 (427)
Q Consensus 159 ~~~~~~~~~---~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 234 (427)
..+.+.+.. .+... .......+|+++. ++.++++.+.... .....+++.........++++++|||++||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~ 222 (451)
T PLN03004 148 AFSFYLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALEN 222 (451)
T ss_pred HHHHHHHhccccccccccccCCeecCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHH
Confidence 887765321 11111 0111245788876 7778888765432 1223344555555667788999999999999
Q ss_pred hHHHHHHhcCC-CCEEEeCccCCCCCCC--CCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcE
Q 035495 235 GALQWLRNYIK-LPVWAIGPLLPQSYLK--KSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSF 311 (427)
Q Consensus 235 ~~~~~~~~~~~-~~~~~vGp~~~~~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 311 (427)
.++++++..+. ++++.|||++...... ....+.++.+|||.+++++||||||||+..++.+++++++.+|+.++++|
T Consensus 223 ~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~F 302 (451)
T PLN03004 223 RAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRF 302 (451)
T ss_pred HHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 99999987543 6899999998532100 11123569999999988999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC
Q 035495 312 LWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~ 391 (427)
||+++.....+.........+|++|.++.+ .+|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+
T Consensus 303 lW~~r~~~~~~~~~~~~~~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~ 380 (451)
T PLN03004 303 LWVVRNPPELEKTELDLKSLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPL 380 (451)
T ss_pred EEEEcCCccccccccchhhhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccc
Confidence 999985310000000011238899999998 899999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 392 AAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 392 ~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
+.||+.||+++++.||+|++++.++.+.+++|+|+
T Consensus 381 ~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 381 YAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred cccchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 99999999999854799999987444567888775
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-60 Score=466.92 Aligned_cols=406 Identities=35% Similarity=0.639 Sum_probs=298.1
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCC--CCCCCCCCceeEEEcCCCCCCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSA--NPNSPEKFNINLVELPFCSSDH 78 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~ 78 (427)
|.+++.||+|+|+|++||++|++.||+.|+. |||+|||++++.+...+++.+... .. +. ..+++..+++++..+
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~--~~-~~~~~~~~~~p~~~~ 76 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLN--PG-LEIDIQIFNFPCVEL 76 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccC--CC-CcceEEEeeCCCCcC
Confidence 6677899999999999999999999999999 999999999999888777654311 00 00 123555556553334
Q ss_pred CCCCCCCCCcc-------chhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 79 GLPPNTENTEN-------LSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 79 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
++|++.+.... ........+......+.+.+++++++. ++||||+|.++.|+..+|+++|||.+.|+
T Consensus 77 glP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~ 150 (482)
T PLN03007 77 GLPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT------RPDCLVADMFFPWATEAAEKFGVPRLVFH 150 (482)
T ss_pred CCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC------CCCEEEECCcchhHHHHHHHhCCCeEEee
Confidence 67665433321 011122233334455566666666543 39999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhcCCCCCC-C-CCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCc
Q 035495 152 TGGAYVTLAYTSMWLNLPQKKT-N-SDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTA 229 (427)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (427)
+++++....+++.+...+.... . .+...+|++|..+.++..+++.. .....+..++....+...+++++++||+
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~ 226 (482)
T PLN03007 151 GTGYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSF 226 (482)
T ss_pred cccHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECH
Confidence 9998877666555443332211 1 11234677764333444444421 1112234455555556777889999999
Q ss_pred cccChhHHHHHHhcCCCCEEEeCccCCCCCC---------CCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHH
Q 035495 230 EDIEPGALQWLRNYIKLPVWAIGPLLPQSYL---------KKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMEL 300 (427)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~---------~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~ 300 (427)
.+||+++.+.+++....++++|||+...... .....++++.+||+.+++++||||||||+...+.+++.++
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 306 (482)
T PLN03007 227 YELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEI 306 (482)
T ss_pred HHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHH
Confidence 9999999999988776789999998643210 0111246799999999889999999999998889999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHH
Q 035495 301 DIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESL 380 (427)
Q Consensus 301 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal 380 (427)
+.+|+.++++|||+++..... +.....+|+++.++.. ++|+++.+|+||.+||+|++|++|||||||||++||+
T Consensus 307 ~~~l~~~~~~flw~~~~~~~~----~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 380 (482)
T PLN03007 307 AAGLEGSGQNFIWVVRKNENQ----GEKEEWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGV 380 (482)
T ss_pred HHHHHHCCCCEEEEEecCCcc----cchhhcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHH
Confidence 999999999999999864200 0112358899999988 9999999999999999999999999999999999999
Q ss_pred hcCCcEEeccCcccchhhHHHHHhhhceeEEEecC-----CCccccccccc
Q 035495 381 SQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG-----VQSTIVGHEVK 426 (427)
Q Consensus 381 ~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~-----~~~~~~~~~i~ 426 (427)
++|||||++|+++||+.||+++++.+++|+.+..+ +.+.+++|+|+
T Consensus 381 ~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~ 431 (482)
T PLN03007 381 AAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVE 431 (482)
T ss_pred HcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHH
Confidence 99999999999999999999987546777766432 23467777764
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8e-60 Score=452.01 Aligned_cols=396 Identities=30% Similarity=0.507 Sum_probs=296.6
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCcchHHhh--hhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQ--NTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~-Gh~Vt~~~~~~~~~~v~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
.++||+++|+|++||++|++.||+.|+. + |..|||++++.+...+. ........ ..+++++.+|.++ .+++
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~----~~~i~~~~lp~~~-~~~l 75 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAA----RTTCQITEIPSVD-VDNL 75 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccC----CCceEEEECCCCc-cccC
Confidence 4579999999999999999999999997 7 99999999876554431 11110000 0259999998653 2233
Q ss_pred -CCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCc-eEEEecchHHHH
Q 035495 81 -PPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGST-NVTFATGGAYVT 158 (427)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~ 158 (427)
+.+ . .....+......+.+.++++++++. .+++|||+|.+..|+.++|+++||| .+.+++++++..
T Consensus 76 ~~~~---~-----~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~ 143 (470)
T PLN03015 76 VEPD---A-----TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFL 143 (470)
T ss_pred CCCC---c-----cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHH
Confidence 211 1 1123455666788899999998764 2589999999999999999999999 577778777776
Q ss_pred HHHHhhhhc---CCCC-CCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccCh
Q 035495 159 LAYTSMWLN---LPQK-KTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEP 234 (427)
Q Consensus 159 ~~~~~~~~~---~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 234 (427)
..+++.+.. .+.. ....+.+.+|+++. ++..+++...... .......+.+.......++++++|||++||+
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~ 218 (470)
T PLN03015 144 AVMVYLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQG 218 (470)
T ss_pred HHHHhhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhH
Confidence 666544221 1110 01112345788876 7878888654321 1121222334445577889999999999999
Q ss_pred hHHHHHHhcC------CCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCC
Q 035495 235 GALQWLRNYI------KLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASA 308 (427)
Q Consensus 235 ~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~ 308 (427)
.+++.++..+ .++++.|||+.... .....++++.+|||.+++++||||||||...++.+++++++.+|+.++
T Consensus 219 ~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~--~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 219 NTLAALREDMELNRVMKVPVYPIGPIVRTN--VHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred HHHHHHHhhcccccccCCceEEecCCCCCc--ccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 9999998752 25699999998532 122234579999999988999999999999999999999999999999
Q ss_pred CcEEEEEcCCCCC----CcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCC
Q 035495 309 KSFLWVITPPVGF----DLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 309 ~~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
++|||+++..... +...+...+.+|+++.++++ .+++++.+|+||.+||+|++|++|||||||||++||+++||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CcEEEEEecCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999999753110 00001112358999999998 88998889999999999999999999999999999999999
Q ss_pred cEEeccCcccchhhHHHHHhhhceeEEEec-CCCccccccccc
Q 035495 385 PTIGWPIAAEQTYNSKMLVEEMGVAVEMTR-GVQSTIVGHEVK 426 (427)
Q Consensus 385 P~v~~P~~~DQ~~na~~v~~~lG~G~~l~~-~~~~~~~~~~i~ 426 (427)
|||++|++.||+.||+++++.||+|+++.. ++++.+++|+|+
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~ 417 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVA 417 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHH
Confidence 999999999999999999555899999963 223578888875
No 13
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1e-59 Score=455.13 Aligned_cols=401 Identities=25% Similarity=0.439 Sum_probs=296.7
Q ss_pred CC--CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhh---cC-CCCCCCCCCceeEEEcCCC
Q 035495 1 MG--SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTI---SS-ANPNSPEKFNINLVELPFC 74 (427)
Q Consensus 1 m~--~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~---~~-~~~~~~~~~~i~~~~~~~~ 74 (427)
|+ +-++||+++|+|++||++|++.||+.|+. +|..|||++++.+...+.+.. .. ... .+...++|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~--~~~~~i~~~~~p-- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKP--VGDGFIRFEFFE-- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhcccccccccccc--CCCCeEEEeeCC--
Confidence 65 44799999999999999999999999999 999999999998776665311 00 000 000225555443
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHh-cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecc
Q 035495 75 SSDHGLPPNTENTENLSLDLIINFFTSS-QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (427)
+++|++.+...+ ...++..+ ..+.+.++++++.+.. .+.+++|||+|.++.|+..+|+++|||.+.|+++
T Consensus 76 ---dglp~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~-~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~ 146 (480)
T PLN02555 76 ---DGWAEDDPRRQD-----LDLYLPQLELVGKREIPNLVKRYAE-QGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQ 146 (480)
T ss_pred ---CCCCCCcccccC-----HHHHHHHHHHhhhHHHHHHHHHHhc-cCCCceEEEECCcchHHHHHHHHcCCCeEEeecc
Confidence 467655432211 12233333 3567888888887542 2234599999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhc-CCCCCC-CC-CCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCcc
Q 035495 154 GAYVTLAYTSMWLN-LPQKKT-NS-DEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAE 230 (427)
Q Consensus 154 ~~~~~~~~~~~~~~-~p~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (427)
++..+..+++.... .+.... .. ....+|++|. ++.++++.+...........+.+.+.......++++++|||+
T Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 147 SCACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred cHHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchH
Confidence 99988887766432 121111 11 2245788877 777888876532222223344444555566778899999999
Q ss_pred ccChhHHHHHHhcCCCCEEEeCccCCCCCC--C---C--CCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHH
Q 035495 231 DIEPGALQWLRNYIKLPVWAIGPLLPQSYL--K---K--SKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIG 303 (427)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~--~---~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a 303 (427)
+||+.+++.++... + ++.|||+...... . . ...++++.+||+.+++++||||||||+..++.+++.+++.+
T Consensus 224 eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 224 ELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred HHhHHHHHHHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 99999999987754 4 9999999753210 0 0 12356799999999888999999999999999999999999
Q ss_pred HHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcC
Q 035495 304 LEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQG 383 (427)
Q Consensus 304 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~G 383 (427)
++.++++|||+++..... .+.....+|+++.++.. .|+++.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 302 l~~~~~~flW~~~~~~~~---~~~~~~~lp~~~~~~~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~G 375 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKD---SGVEPHVLPEEFLEKAG---DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSG 375 (480)
T ss_pred HHhcCCeEEEEEecCccc---ccchhhcCChhhhhhcC---CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcC
Confidence 999999999998743100 00112357888876654 355666999999999999999999999999999999999
Q ss_pred CcEEeccCcccchhhHHHHHhhhceeEEEecCC--Cccccccccc
Q 035495 384 LPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV--QSTIVGHEVK 426 (427)
Q Consensus 384 vP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~--~~~~~~~~i~ 426 (427)
||||++|++.||+.||+++++.||+|+++..++ .+.+++|+|+
T Consensus 376 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~ 420 (480)
T PLN02555 376 VPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVA 420 (480)
T ss_pred CCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHH
Confidence 999999999999999999998679999996422 3467888775
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-59 Score=451.49 Aligned_cols=384 Identities=26% Similarity=0.411 Sum_probs=288.6
Q ss_pred CC-CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCC
Q 035495 1 MG-SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHG 79 (427)
Q Consensus 1 m~-~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (427)
|+ ..+.||+++|+|++||++|++.||+.|+. +|++|||++++.+...+++.... . .+++|+.+|. +
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~--~-----~~i~~v~lp~-----g 67 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDP--K-----LGITFMSISD-----G 67 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCC--C-----CCEEEEECCC-----C
Confidence 54 34579999999999999999999999999 99999999999887766653211 1 3589998773 3
Q ss_pred CCCCCCCCccchhhHHHHHHHHhc-CCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHH
Q 035495 80 LPPNTENTENLSLDLIINFFTSSQ-SPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVT 158 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 158 (427)
++.+. +.. +..+...+. .+.+.++++++++.. ..+++|||+|.+..|+.++|+++|||++.|+++++..+
T Consensus 68 ~~~~~------~~~-~~~l~~a~~~~~~~~l~~ll~~l~~--~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~ 138 (448)
T PLN02562 68 QDDDP------PRD-FFSIENSMENTMPPQLERLLHKLDE--DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAY 138 (448)
T ss_pred CCCCc------ccc-HHHHHHHHHHhchHHHHHHHHHhcC--CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHH
Confidence 33211 111 223445554 678888999887642 12468999999999999999999999999999988877
Q ss_pred HHHHhhhhcCCC-----CCC--CCCC-CCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCcc
Q 035495 159 LAYTSMWLNLPQ-----KKT--NSDE-FTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAE 230 (427)
Q Consensus 159 ~~~~~~~~~~p~-----~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (427)
..+.+....... ... ..+. ..+|+++. ++.++++.+...........+.+.+..+....++++++|||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~ 215 (448)
T PLN02562 139 RLIQAIPELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFK 215 (448)
T ss_pred HHHHHHHHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChh
Confidence 766544321111 100 0011 24677766 777788765443221223344555555667778899999999
Q ss_pred ccChhHHHHHHh----cCCCCEEEeCccCCCCCC---CC--CCCchhhhhhccCCCCCeEEEEecCCcc-cCCHHHHHHH
Q 035495 231 DIEPGALQWLRN----YIKLPVWAIGPLLPQSYL---KK--SKNPEKIIEWLDLHDPASVLHISFGSQN-TISSSQMMEL 300 (427)
Q Consensus 231 ~l~~~~~~~~~~----~~~~~~~~vGp~~~~~~~---~~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~~~ 300 (427)
+||+.+++..+. ...++++.|||++..... .. ...+.++.+||+.+++++||||||||+. .++.++++++
T Consensus 216 eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l 295 (448)
T PLN02562 216 DEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTL 295 (448)
T ss_pred hhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHH
Confidence 999998887653 234789999999865311 01 1234567899999988899999999986 6789999999
Q ss_pred HHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHH
Q 035495 301 DIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESL 380 (427)
Q Consensus 301 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal 380 (427)
+.++++++++|||+++.+. ...+|+++.++.. .|+++.+|+||.+||+|++|++|||||||||++||+
T Consensus 296 ~~~l~~~g~~fiW~~~~~~---------~~~l~~~~~~~~~---~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal 363 (448)
T PLN02562 296 ALALEASGRPFIWVLNPVW---------REGLPPGYVERVS---KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAI 363 (448)
T ss_pred HHHHHHCCCCEEEEEcCCc---------hhhCCHHHHHHhc---cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHH
Confidence 9999999999999997531 1237778776654 456777999999999999999999999999999999
Q ss_pred hcCCcEEeccCcccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 381 SQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 381 ~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
++|||||++|+++||+.||+++++.+|+|+.++. +++|+|+
T Consensus 364 ~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~-----~~~~~l~ 404 (448)
T PLN02562 364 QCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISG-----FGQKEVE 404 (448)
T ss_pred HcCCCEEeCCcccchHHHHHHHHHHhCceeEeCC-----CCHHHHH
Confidence 9999999999999999999999864699998853 4555543
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.4e-59 Score=448.70 Aligned_cols=392 Identities=24% Similarity=0.410 Sum_probs=289.0
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc-hHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN-IQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPP 82 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (427)
.+.||+++|+|++||++|++.||+.|+.++|+.|||++++.+ ...+.+.. ... ++++|+.++ +++++
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~--~~~-----~~i~~~~i~-----dglp~ 69 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH--NNV-----ENLSFLTFS-----DGFDD 69 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC--CCC-----CCEEEEEcC-----CCCCC
Confidence 456999999999999999999999999416999999999854 22111110 011 358999876 46766
Q ss_pred CCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 83 NTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
+.+.... .....+......+.+.+.++++++.. .+.+++|||+|.+.+|+.++|+++|||.+.|+++++..++.++
T Consensus 70 g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~ 145 (455)
T PLN02152 70 GVISNTD---DVQNRLVNFERNGDKALSDFIEANLN-GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYY 145 (455)
T ss_pred ccccccc---cHHHHHHHHHHhccHHHHHHHHHhhc-cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 5432111 11233444446777888888887641 1234699999999999999999999999999999999988877
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhccc--ccceEEEcCccccChhHHHHH
Q 035495 163 SMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSF--ESYGMLCNTAEDIEPGALQWL 240 (427)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~ 240 (427)
+.+... .....+|+++. ++.++++.++..........+.+........ .++++++|||++||+.+++++
T Consensus 146 ~~~~~~------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 216 (455)
T PLN02152 146 NYSTGN------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAI 216 (455)
T ss_pred HhhccC------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhh
Confidence 654211 12245777776 7777888766432222223344444444332 246899999999999999998
Q ss_pred HhcCCCCEEEeCccCCCCC---CC-CC-----CCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcE
Q 035495 241 RNYIKLPVWAIGPLLPQSY---LK-KS-----KNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSF 311 (427)
Q Consensus 241 ~~~~~~~~~~vGp~~~~~~---~~-~~-----~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~ 311 (427)
+. .+++.|||+.+... .. .. ..+.++.+|||.+++++||||||||+..++.+++++++.+|+.++++|
T Consensus 217 ~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 293 (455)
T PLN02152 217 PN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPF 293 (455)
T ss_pred hc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCe
Confidence 65 36999999975320 00 01 124579999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcch-hhh--ccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEe
Q 035495 312 LWVITPPVGFDLRA-EFR--SEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIG 388 (427)
Q Consensus 312 i~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~ 388 (427)
||+++.....+... ... .-.+++++.++.+ . |.++.+|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 294 lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~--~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~ 370 (455)
T PLN02152 294 LWVITDKLNREAKIEGEEETEIEKIAGFRHELE--E-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA 370 (455)
T ss_pred EEEEecCcccccccccccccccccchhHHHhcc--C-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEe
Confidence 99998532100000 000 1124678777655 4 4466699999999999999999999999999999999999999
Q ss_pred ccCcccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 389 WPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 389 ~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
+|++.||+.||+++++.||+|+.+..++++.+++|+|+
T Consensus 371 ~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~ 408 (455)
T PLN02152 371 FPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIR 408 (455)
T ss_pred ccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHH
Confidence 99999999999999986788888876555667888875
No 16
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=4.7e-59 Score=450.86 Aligned_cols=381 Identities=24% Similarity=0.426 Sum_probs=280.9
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHH--HHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQ--IHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~--L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
.++.||+|+|+|++||++|++.||++ |++ ||++|||++++.+.+.+++.... . ..+++..++ +++
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~~--~-----~~~~~~~~~-----~gl 72 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEKP--R-----RPVDLVFFS-----DGL 72 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccCC--C-----CceEEEECC-----CCC
Confidence 45689999999999999999999999 558 99999999999887776443211 1 346666554 466
Q ss_pred CCCCCCCccchhhHHHHHHHHh-cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHH
Q 035495 81 PPNTENTENLSLDLIINFFTSS-QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTL 159 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (427)
|++.. ... ..+...+ ..+.+.+++++++. ++||||+|.+..|+..+|+++|||.+.|+++++..+.
T Consensus 73 p~~~~---~~~----~~~~~~~~~~~~~~l~~~l~~~------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~ 139 (456)
T PLN02210 73 PKDDP---RAP----ETLLKSLNKVGAKNLSKIIEEK------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYS 139 (456)
T ss_pred CCCcc---cCH----HHHHHHHHHhhhHHHHHHHhcC------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHH
Confidence 66532 111 1222333 34566667777653 3999999999999999999999999999999998887
Q ss_pred HHHhhhh-cCCCCCC-C-CCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhH
Q 035495 160 AYTSMWL-NLPQKKT-N-SDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGA 236 (427)
Q Consensus 160 ~~~~~~~-~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 236 (427)
.+.+.+. .-+.... . .+...+|+++. ++.++++.++.... ...+...+.+.......++++++|||.+||+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 215 (456)
T PLN02210 140 VYYRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEI 215 (456)
T ss_pred HHHhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHH
Confidence 7665432 1111111 1 11245677765 66667776543211 111222333443445567899999999999999
Q ss_pred HHHHHhcCCCCEEEeCccCCCC---CCCC----------CCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHH
Q 035495 237 LQWLRNYIKLPVWAIGPLLPQS---YLKK----------SKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIG 303 (427)
Q Consensus 237 ~~~~~~~~~~~~~~vGp~~~~~---~~~~----------~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a 303 (427)
+++++. . +++++|||+++.. .... ...+.+|.+|||.+++++||||||||....+.+++++++.+
T Consensus 216 ~~~l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~ 293 (456)
T PLN02210 216 IESMAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKA 293 (456)
T ss_pred HHHHhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 999887 3 6899999998521 0010 12356789999999889999999999999999999999999
Q ss_pred HHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcC
Q 035495 304 LEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQG 383 (427)
Q Consensus 304 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~G 383 (427)
|+.++++|||+++... ....++.+.++.. +.+.++.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 294 l~~~~~~flw~~~~~~---------~~~~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~G 362 (456)
T PLN02210 294 LKNRGVPFLWVIRPKE---------KAQNVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAG 362 (456)
T ss_pred HHhCCCCEEEEEeCCc---------cccchhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcC
Confidence 9999999999998531 0112344444442 2334566999999999999999999999999999999999
Q ss_pred CcEEeccCcccchhhHHHHHhhhceeEEEecCC-Cccccccccc
Q 035495 384 LPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV-QSTIVGHEVK 426 (427)
Q Consensus 384 vP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~-~~~~~~~~i~ 426 (427)
||||++|++.||+.||+++++.||+|+.++.++ ++.+++|+|+
T Consensus 363 VP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~ 406 (456)
T PLN02210 363 VPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVE 406 (456)
T ss_pred CCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHH
Confidence 999999999999999999987469999997643 4578888775
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.9e-59 Score=454.29 Aligned_cols=396 Identities=28% Similarity=0.463 Sum_probs=294.5
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCC----CEEEEEeCCcchH----HhhhhhcC--CCCCCCCCCceeEEEcC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTG----FKITIANTPLNIQ----YLQNTISS--ANPNSPEKFNINLVELP 72 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~G----h~Vt~~~~~~~~~----~v~~~~~~--~~~~~~~~~~i~~~~~~ 72 (427)
++|.||+|+|+|++||++|++.||+.|+. +| +.|||++++.+.. .+.+.... ..+ .+++|+.+|
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~lp 74 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASG-----LDIRFHHLP 74 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCC-----CCEEEEECC
Confidence 35789999999999999999999999999 87 7999999876422 33332111 111 259999888
Q ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEec
Q 035495 73 FCSSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (427)
.. .++++.+. .. ..+......+.+.++++++++. .+++|||+|.+.+|+..+|+++|||++.|++
T Consensus 75 ~~----~~p~~~e~----~~---~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t 139 (480)
T PLN00164 75 AV----EPPTDAAG----VE---EFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFT 139 (480)
T ss_pred CC----CCCCcccc----HH---HHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEEC
Confidence 53 13333221 11 1222244567778888887652 2479999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhcCCCC----CCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcC
Q 035495 153 GGAYVTLAYTSMWLNLPQK----KTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNT 228 (427)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 228 (427)
+++..+..+.+........ ....+...+|+++. ++..+++.+.... .......+....+....++++++||
T Consensus 140 ~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNT 214 (480)
T PLN00164 140 STAAMLALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNT 214 (480)
T ss_pred ccHHHHHHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEec
Confidence 9999888777653211000 00012345788776 7777888654321 1122233334445567788999999
Q ss_pred ccccChhHHHHHHhcC------CCCEEEeCccCCCCCC-CCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHH
Q 035495 229 AEDIEPGALQWLRNYI------KLPVWAIGPLLPQSYL-KKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELD 301 (427)
Q Consensus 229 ~~~l~~~~~~~~~~~~------~~~~~~vGp~~~~~~~-~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~ 301 (427)
|++||+.++++++... .++++.|||++..... .....++++.+|||.+++++||||||||+..++.+++++++
T Consensus 215 f~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela 294 (480)
T PLN00164 215 AAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIA 294 (480)
T ss_pred hHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHH
Confidence 9999999999998742 2589999999843211 11234568999999998899999999999999999999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCcc--hh-hhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHH
Q 035495 302 IGLEASAKSFLWVITPPVGFDLR--AE-FRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLE 378 (427)
Q Consensus 302 ~a~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~e 378 (427)
.+|+.++++|||+++.....+.. .+ .....+|+++.++++ .+++++.+|+||.+||+|++|++|||||||||++|
T Consensus 295 ~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~E 372 (480)
T PLN00164 295 AGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLE 372 (480)
T ss_pred HHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHH
Confidence 99999999999999854210000 00 112348889999988 88999999999999999999999999999999999
Q ss_pred HHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC--Cccccccccc
Q 035495 379 SLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV--QSTIVGHEVK 426 (427)
Q Consensus 379 al~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~--~~~~~~~~i~ 426 (427)
|+++|||||++|+++||+.||+++++.||+|+.++.++ ++.+++|+|+
T Consensus 373 ai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~ 422 (480)
T PLN00164 373 SLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELE 422 (480)
T ss_pred HHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHH
Confidence 99999999999999999999998754479999997532 3457887765
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.1e-58 Score=441.36 Aligned_cols=393 Identities=26% Similarity=0.450 Sum_probs=283.4
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCC--CEEEEEeCCcch-HHhhhhhcC--CCCCCCCCCceeEEEcCCCCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTG--FKITIANTPLNI-QYLQNTISS--ANPNSPEKFNINLVELPFCSSD 77 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~G--h~Vt~~~~~~~~-~~v~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ 77 (427)
+++.||+|+|+|++||++|++.||+.|+. +| ..|||++++.+. ..+...... ... ++++|+.+|...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~-----~~i~~~~lp~~~-- 72 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQ-----PFVRFIDVPELE-- 72 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCC-----CCeEEEEeCCCC--
Confidence 35689999999999999999999999999 98 999999998765 222221110 111 459999888321
Q ss_pred CCCCCCCCCCccchhhHHHHHHHHhcCCcH----HHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecc
Q 035495 78 HGLPPNTENTENLSLDLIINFFTSSQSPKT----PLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (427)
..+... ...+ ....+...+....+ .+.+++++.. ..+.+++|||+|.+++|+..+|+++|||.+.|+++
T Consensus 73 -~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~ 145 (468)
T PLN02207 73 -EKPTLG-GTQS----VEAYVYDVIEKNIPLVRNIVMDILSSLA-LDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTT 145 (468)
T ss_pred -CCCccc-cccC----HHHHHHHHHHhcchhHHHHHHHHHHHhc-cCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECc
Confidence 111111 1111 11233344444433 4444444321 11123499999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcC-CCCCC---CC-CCCCCCCC-CCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEc
Q 035495 154 GAYVTLAYTSMWLNL-PQKKT---NS-DEFTLPGF-PERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCN 227 (427)
Q Consensus 154 ~~~~~~~~~~~~~~~-p~~~~---~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (427)
++..+..+.+..... +.... .. ....+|++ +. ++..+++.++... .. ...+.+......+++++++|
T Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvN 218 (468)
T PLN02207 146 NSGFLAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVN 218 (468)
T ss_pred cHHHHHHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEE
Confidence 998877766543211 11000 01 12457777 45 7777888755321 11 23333444566778999999
Q ss_pred CccccChhHHHHHHh-cCCCCEEEeCccCCCCCCCCC----CCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHH
Q 035495 228 TAEDIEPGALQWLRN-YIKLPVWAIGPLLPQSYLKKS----KNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDI 302 (427)
Q Consensus 228 ~~~~l~~~~~~~~~~-~~~~~~~~vGp~~~~~~~~~~----~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~ 302 (427)
|+++||+++++.++. ...++++.|||++.......+ ..++++.+|||.+++++||||||||...++.+++++++.
T Consensus 219 tf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~ 298 (468)
T PLN02207 219 SSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAH 298 (468)
T ss_pred chHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHH
Confidence 999999999998865 334789999999864311111 123679999999988899999999999999999999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhc
Q 035495 303 GLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQ 382 (427)
Q Consensus 303 a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~ 382 (427)
+|+.++++|||+++... ....+.+|+++.++.. .++ .+.+|+||.+||+|++|++|||||||||++||+++
T Consensus 299 ~l~~~~~~flW~~r~~~------~~~~~~lp~~f~er~~--~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~ 369 (468)
T PLN02207 299 GLELCQYRFLWSLRTEE------VTNDDLLPEGFLDRVS--GRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWF 369 (468)
T ss_pred HHHHCCCcEEEEEeCCC------ccccccCCHHHHhhcC--CCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHc
Confidence 99999999999998531 1112358889887766 444 55699999999999999999999999999999999
Q ss_pred CCcEEeccCcccchhhHHHHHhhhceeEEEecC----CCccccccccc
Q 035495 383 GLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG----VQSTIVGHEVK 426 (427)
Q Consensus 383 GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~----~~~~~~~~~i~ 426 (427)
|||||++|+++||+.||+++++.+|+|+.+..+ .++.+++|+|+
T Consensus 370 GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~ 417 (468)
T PLN02207 370 GVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIE 417 (468)
T ss_pred CCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHH
Confidence 999999999999999999877657999988542 13456777765
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-57 Score=442.61 Aligned_cols=379 Identities=26% Similarity=0.432 Sum_probs=285.0
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcC--CCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRST--GFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
..++||+++|+|++||++|++.||++|++ + ||+|||++++.+...+++... . .+++|+.+|. ++
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~---~-----~gi~fv~lp~-----~~ 73 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPK---P-----DNIRFATIPN-----VI 73 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCC---C-----CCEEEEECCC-----CC
Confidence 45799999999999999999999999999 9 999999999998888777321 1 4699998872 34
Q ss_pred CCCCCCCccchhhHHHHHHHH-hcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHH
Q 035495 81 PPNTENTENLSLDLIINFFTS-SQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTL 159 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (427)
++......+ ...+... ...+.+.+.++++++. .++||||+|.++.|+..+|+++|||++.++++++..+.
T Consensus 74 p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~ 144 (459)
T PLN02448 74 PSELVRAAD-----FPGFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFS 144 (459)
T ss_pred CCccccccC-----HHHHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHH
Confidence 433221111 1122222 2456777788887763 34899999999999999999999999999999997777
Q ss_pred HHHhhhhcC-----CCCCCC-CCC--CCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccc
Q 035495 160 AYTSMWLNL-----PQKKTN-SDE--FTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAED 231 (427)
Q Consensus 160 ~~~~~~~~~-----p~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (427)
.+.+..... +..... .+. ..+|+++. ++..+++.+.... .....+.+.........++.+++|||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~e 219 (459)
T PLN02448 145 VFYHFDLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYE 219 (459)
T ss_pred HHHHhhhhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHH
Confidence 665543211 111100 111 13666655 6666777654321 1222334444445566678999999999
Q ss_pred cChhHHHHHHhcCCCCEEEeCccCCCCCC--CC----C-CCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHH
Q 035495 232 IEPGALQWLRNYIKLPVWAIGPLLPQSYL--KK----S-KNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGL 304 (427)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~vGp~~~~~~~--~~----~-~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~ 304 (427)
||+.++++++..++++++.|||+...... .. . ..+.++.+|++.+++++||||||||+...+.+++++++.+|
T Consensus 220 LE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l 299 (459)
T PLN02448 220 LEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGL 299 (459)
T ss_pred hhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 99999999988777789999999863200 00 0 12247999999988899999999999888899999999999
Q ss_pred HhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCC
Q 035495 305 EASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
+.++++|||++.... .++.++. +.|+++.+|+||.+||+|++|++|||||||||++||+++||
T Consensus 300 ~~~~~~~lw~~~~~~--------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~Gv 362 (459)
T PLN02448 300 RDSGVRFLWVARGEA--------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGV 362 (459)
T ss_pred HhCCCCEEEEEcCch--------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCC
Confidence 999999999876431 1222221 34677779999999999999999999999999999999999
Q ss_pred cEEeccCcccchhhHHHHHhhhceeEEEecC--CCccccccccc
Q 035495 385 PTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG--VQSTIVGHEVK 426 (427)
Q Consensus 385 P~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~--~~~~~~~~~i~ 426 (427)
|||++|++.||+.||+++++.||+|+.+..+ +++.+++|+|+
T Consensus 363 P~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~ 406 (459)
T PLN02448 363 PMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIA 406 (459)
T ss_pred CEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHH
Confidence 9999999999999999999867999999753 23467787765
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.7e-57 Score=439.21 Aligned_cols=391 Identities=28% Similarity=0.461 Sum_probs=280.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCC--CEEEEEeCCcchHHh-------hhhhcCCCCCCCCCCceeEEEcCCCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTG--FKITIANTPLNIQYL-------QNTISSANPNSPEKFNINLVELPFCS 75 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~G--h~Vt~~~~~~~~~~v-------~~~~~~~~~~~~~~~~i~~~~~~~~~ 75 (427)
|+||+++|+|++||++|++.||+.|+. +| ..|||++++.+...+ .+.. .... ++++|+.+|.+.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~-~~~~-----~~i~~~~lp~~~ 74 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLS-ASSE-----DRLRYEVISAGD 74 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhcc-cCCC-----CCeEEEEcCCCC
Confidence 689999999999999999999999999 98 889999998764321 1110 0001 469999888542
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhh----cCCCCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 76 SDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEK----AGKPPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
++.. ... .+...+....+.+++.++++... ...+.+|||+|.++.|+.++|+++|||++.|+
T Consensus 75 -----~~~~----~~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~ 140 (481)
T PLN02554 75 -----QPTT----EDP-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFY 140 (481)
T ss_pred -----CCcc----cch-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEe
Confidence 1110 011 12222333455555555554321 11234899999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhcCCC-----CC-CCC-CCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceE
Q 035495 152 TGGAYVTLAYTSMWLNLPQ-----KK-TNS-DEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGM 224 (427)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~-----~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
++++..++.+.+.+..... .. ... ..+.+|+++. .++..+++..... ..+...+.........++++
T Consensus 141 t~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gv 214 (481)
T PLN02554 141 TSNATFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGI 214 (481)
T ss_pred CCcHHHHHHHHhhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEE
Confidence 9999998888766432111 00 011 1234677631 1555666643321 12234444555567778899
Q ss_pred EEcCccccChhHHHHHHhc--CCCCEEEeCccCC-CCCCC--CCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHH
Q 035495 225 LCNTAEDIEPGALQWLRNY--IKLPVWAIGPLLP-QSYLK--KSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMME 299 (427)
Q Consensus 225 l~~~~~~l~~~~~~~~~~~--~~~~~~~vGp~~~-~~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 299 (427)
++||+.+||+.+.+.+.+. ..++++.|||++. ..... ....++++.+||+.+++++||||||||+..++.+++++
T Consensus 215 lvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 294 (481)
T PLN02554 215 LVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQARE 294 (481)
T ss_pred EEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHH
Confidence 9999999999999988763 3378999999953 22101 12355789999999988899999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCCC---Ccch--hhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChh
Q 035495 300 LDIGLEASAKSFLWVITPPVGF---DLRA--EFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWN 374 (427)
Q Consensus 300 ~~~a~~~~~~~~i~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~ 374 (427)
++.+|+.++++|||+++..... +... +.....+|+++.++.. .+. ++.+|+||.+||+|++|++||||||||
T Consensus 295 la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~--~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~n 371 (481)
T PLN02554 295 IAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK--DIG-KVIGWAPQVAVLAKPAIGGFVTHCGWN 371 (481)
T ss_pred HHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc--cCc-eEEeeCCHHHHhCCcccCcccccCccc
Confidence 9999999999999999863100 0000 0011236888887766 444 556999999999999999999999999
Q ss_pred hHHHHHhcCCcEEeccCcccchhhHH-HHHhhhceeEEEecC--------CCccccccccc
Q 035495 375 SVLESLSQGLPTIGWPIAAEQTYNSK-MLVEEMGVAVEMTRG--------VQSTIVGHEVK 426 (427)
Q Consensus 375 s~~eal~~GvP~v~~P~~~DQ~~na~-~v~~~lG~G~~l~~~--------~~~~~~~~~i~ 426 (427)
|++||+++|||||++|+++||+.||+ ++++ +|+|+.++++ +++.+++|+|+
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~ 431 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIE 431 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHH
Confidence 99999999999999999999999995 5777 7999999752 22467887765
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-56 Score=437.13 Aligned_cols=396 Identities=29% Similarity=0.438 Sum_probs=280.7
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCC---CEEEEEeCCcch-----HHhhhhhcCCCCCCCCCCceeEEEcCCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTG---FKITIANTPLNI-----QYLQNTISSANPNSPEKFNINLVELPFC 74 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~G---h~Vt~~~~~~~~-----~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (427)
+++.||+|+|+|++||++|++.||+.|+. +| +.||+++++... ..+.+.. ... ++++|+.+|.+
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~--~~~-----~~i~~~~lp~~ 72 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLI--ASE-----PRIRLVTLPEV 72 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcc--cCC-----CCeEEEECCCC
Confidence 35679999999999999999999999999 98 356777654321 1222211 111 35999998854
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhh---cCC-CCcEEEecCCcchHHHHHHHhCCceEEE
Q 035495 75 SSDHGLPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEK---AGK-PPICIITDTFFGWAVDVAKSAGSTNVTF 150 (427)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 150 (427)
. . ++..+....... ..+......+.+.+++.++++... .+. +++|||+|.++.|+.++|+++|||.+.|
T Consensus 73 ~---~-p~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F 145 (475)
T PLN02167 73 Q---D-PPPMELFVKASE---AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIF 145 (475)
T ss_pred C---C-CccccccccchH---HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEE
Confidence 2 1 221111011111 223333345566677777665321 112 4699999999999999999999999999
Q ss_pred ecchHHHHHHHHhhhh-c--CCCC--CCC-CCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceE
Q 035495 151 ATGGAYVTLAYTSMWL-N--LPQK--KTN-SDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGM 224 (427)
Q Consensus 151 ~~~~~~~~~~~~~~~~-~--~p~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (427)
+++++..++.+++... . .+.. ... .+...+|+++.. ++..+++...... . ..+.+....+....++++
T Consensus 146 ~t~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~v 219 (475)
T PLN02167 146 LTCNAGFLGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGI 219 (475)
T ss_pred ECccHHHHHHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCc---c-hHHHHHHHHHhhcccCEe
Confidence 9999988877765432 1 1100 001 122457777321 5556666543321 1 122333444556778899
Q ss_pred EEcCccccChhHHHHHHhcC--CCCEEEeCccCCCCCCCC----CCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHH
Q 035495 225 LCNTAEDIEPGALQWLRNYI--KLPVWAIGPLLPQSYLKK----SKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMM 298 (427)
Q Consensus 225 l~~~~~~l~~~~~~~~~~~~--~~~~~~vGp~~~~~~~~~----~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~ 298 (427)
++|||++||+.++++++... -|+++.|||++....... ...+.++.+||+.+++++||||||||+...+.++++
T Consensus 220 lvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 299 (475)
T PLN02167 220 LVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIK 299 (475)
T ss_pred eeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 99999999999999987641 168999999986431111 112367999999998889999999999889999999
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHH
Q 035495 299 ELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLE 378 (427)
Q Consensus 299 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~e 378 (427)
+++.+++.++++|||+++.....+ ......+|+++.++.+ .++. +.+|+||.+||+|++|++|||||||||++|
T Consensus 300 ela~~l~~~~~~flw~~~~~~~~~---~~~~~~lp~~~~er~~--~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~E 373 (475)
T PLN02167 300 EIAQALELVGCRFLWSIRTNPAEY---ASPYEPLPEGFMDRVM--GRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLE 373 (475)
T ss_pred HHHHHHHhCCCcEEEEEecCcccc---cchhhhCChHHHHHhc--cCee-eeccCCHHHHhcCcccCeEEeeCCcccHHH
Confidence 999999999999999998531000 0012348889988887 6664 459999999999999999999999999999
Q ss_pred HHhcCCcEEeccCcccchhhHHH-HHhhhceeEEEecC---C-Cccccccccc
Q 035495 379 SLSQGLPTIGWPIAAEQTYNSKM-LVEEMGVAVEMTRG---V-QSTIVGHEVK 426 (427)
Q Consensus 379 al~~GvP~v~~P~~~DQ~~na~~-v~~~lG~G~~l~~~---~-~~~~~~~~i~ 426 (427)
|+++|||||++|+++||+.||++ +++ +|+|+.++.+ + ++.+++|+|+
T Consensus 374 al~~GvP~l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 374 SLWFGVPIATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred HHHcCCCEEeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHH
Confidence 99999999999999999999987 566 7999999753 1 2456777765
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-46 Score=368.17 Aligned_cols=373 Identities=15% Similarity=0.198 Sum_probs=245.7
Q ss_pred CcEEEEe-CCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCC--
Q 035495 5 NEHIGML-PLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLP-- 81 (427)
Q Consensus 5 ~~~il~~-~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 81 (427)
.-||+.+ |.++.||+.-+.+|+++|++ |||+||++++..... ...... .+++...++.. .+.+.
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~~-~~~~~~---------~~~~~i~~~~~--~~~~~~~ 86 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRVY-YASHLC---------GNITEIDASLS--VEYFKKL 86 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEecccccc-cccCCC---------CCEEEEEcCCC--hHHHHHH
Confidence 4568755 88999999999999999999 999999997753211 100000 45666655421 01110
Q ss_pred --C-CCCCC-ccc--hhhHHH----HHHHHh--cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHh-CCceE
Q 035495 82 --P-NTENT-ENL--SLDLII----NFFTSS--QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSA-GSTNV 148 (427)
Q Consensus 82 --~-~~~~~-~~~--~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v 148 (427)
. ..... ... ...... .+.... ....+.+.+++++ ...++|+||+|.+..|+..+|+.+ ++|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~----~~~kFDlvi~e~~~~c~~~la~~~~~~p~i 162 (507)
T PHA03392 87 VKSSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN----KNNKFDLLVTEAFLDYPLVFSHLFGDAPVI 162 (507)
T ss_pred HhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc----CCCceeEEEecccchhHHHHHHHhCCCCEE
Confidence 0 00000 000 000000 011111 1223344455531 123599999999989999999999 99998
Q ss_pred EEecchHHHH----HH-HHhhhhcCCCCC-CCCCCCCCCCCCCCcccchhccchhhhhcCCCC-chhhhhh----hhhhc
Q 035495 149 TFATGGAYVT----LA-YTSMWLNLPQKK-TNSDEFTLPGFPERCHFHITQLHKYLRMAGGSD-DWSKFMQ----PNITQ 217 (427)
Q Consensus 149 ~~~~~~~~~~----~~-~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~ 217 (427)
.++++..... .. .+.++.++|... ...+.+.+.++..|..........+.......+ ...+.+. ...+.
T Consensus 163 ~~ss~~~~~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l 242 (507)
T PHA03392 163 QISSGYGLAENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIREL 242 (507)
T ss_pred EEcCCCCchhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHH
Confidence 8877544322 11 233345566443 233445555444432111100000000000000 0111111 12233
Q ss_pred ccccceEEEcCccccChhHHHHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCccc---CCH
Q 035495 218 SFESYGMLCNTAEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNT---ISS 294 (427)
Q Consensus 218 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~---~~~ 294 (427)
.++.+.+++|+.+.++.+ +++++++++|||+..+.. +.+++++++.+|++.+ ++++|||||||+.. .+.
T Consensus 243 ~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~-~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~ 314 (507)
T PHA03392 243 RNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKK-PPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDN 314 (507)
T ss_pred HhCCcEEEEecCccccCC------CCCCCCeeeecccccCCC-CCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCH
Confidence 456789999999888865 678899999999987531 2357889999999876 45899999999853 567
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChh
Q 035495 295 SQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWN 374 (427)
Q Consensus 295 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~ 374 (427)
+.++.+++|+++.+++|||+++... .+.+ . ++|+++.+|+||.+||+|+++++||||||+|
T Consensus 315 ~~~~~~l~a~~~l~~~viw~~~~~~------------~~~~-----~--p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~ 375 (507)
T PHA03392 315 EFLQMLLRTFKKLPYNVLWKYDGEV------------EAIN-----L--PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQ 375 (507)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCc------------Cccc-----C--CCceEEecCCCHHHHhcCCCCCEEEecCCcc
Confidence 8999999999999999999998642 1111 1 7899999999999999999999999999999
Q ss_pred hHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCCCcccccccc
Q 035495 375 SVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEV 425 (427)
Q Consensus 375 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i 425 (427)
|++||+++|||+|++|+++||+.||+|+++. |+|+.+++ ..++.++|
T Consensus 376 s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l 422 (507)
T PHA03392 376 STDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQL 422 (507)
T ss_pred cHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHH
Confidence 9999999999999999999999999999995 99999998 45666554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3e-48 Score=386.95 Aligned_cols=368 Identities=20% Similarity=0.279 Sum_probs=207.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCC
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTEN 86 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (427)
||+++|. +.||+.++..|+++|++ |||+||++++... ..+..... .++++..++.....+........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPSPS-SSLNPSKP---------SNIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHHHH-HT---------------S-CCEEEE-----TT------TT
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEeecc-cccccccc---------cceeeEEEcCCcchHHHhhhhHH
Confidence 6888884 88999999999999999 9999999986432 12221111 44666665543222222211110
Q ss_pred Cccc-hh-----hHHHHHHHH----hcCCcHHH---------HHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCce
Q 035495 87 TENL-SL-----DLIINFFTS----SQSPKTPL---------YNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTN 147 (427)
Q Consensus 87 ~~~~-~~-----~~~~~~~~~----~~~~~~~~---------~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~ 147 (427)
.... .. ......... .......+ .+.+++.+ +|++|+|.+..|+..+|+.+|+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~------fDlvI~d~f~~c~~~la~~l~iP~ 143 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEK------FDLVISDAFDPCGLALAHYLGIPV 143 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHH------HCT-EEEEEESSHHHHHHHHHHTH
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc------cccceEeeccchhHHHHHHhcCCe
Confidence 0000 00 001111111 11222222 22333333 999999999999999999999999
Q ss_pred EEEecchHHHH----H-HHHhhhhcCCCCCC-CCCCCCCCCCCCCcccch--hccchhhhhcCCCCchhhhh---hhhhh
Q 035495 148 VTFATGGAYVT----L-AYTSMWLNLPQKKT-NSDEFTLPGFPERCHFHI--TQLHKYLRMAGGSDDWSKFM---QPNIT 216 (427)
Q Consensus 148 v~~~~~~~~~~----~-~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~ 216 (427)
+.+.+...... . ....++.+.|.... .++.+.+.++..|..... .......... ......+.+ ....+
T Consensus 144 i~~~s~~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 222 (500)
T PF00201_consen 144 IIISSSTPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRE 222 (500)
T ss_dssp HHHHHCCSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHH
T ss_pred EEEecccccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHH
Confidence 87644322110 0 11223344444322 233455555444322111 0111111111 011111111 11222
Q ss_pred cccccceEEEcCccccChhHHHHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCC-HH
Q 035495 217 QSFESYGMLCNTAEDIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTIS-SS 295 (427)
Q Consensus 217 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~ 295 (427)
.....+.+++|+.+.++.+ ++ .+|++++||+++... ..+++.++++|++...+++||||||||+...- .+
T Consensus 223 ~~~~~~l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~---~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~ 293 (500)
T PF00201_consen 223 LLSNASLVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKP---AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEE 293 (500)
T ss_dssp HHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S-------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHH
T ss_pred HHHHHHHHhhhccccCcCC-----cc-hhhcccccCcccccc---ccccccccchhhhccCCCCEEEEecCcccchhHHH
Confidence 3345567788888777643 44 458999999998764 56789999999998567899999999997544 45
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhh
Q 035495 296 QMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNS 375 (427)
Q Consensus 296 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s 375 (427)
..++++++|++++++|||++.... +..+ ++|+.+.+|+||.+||+|++|++||||||+||
T Consensus 294 ~~~~~~~~~~~~~~~~iW~~~~~~-------------~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s 353 (500)
T PF00201_consen 294 KLKEIAEAFENLPQRFIWKYEGEP-------------PENL-------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNS 353 (500)
T ss_dssp HHHHHHHHHHCSTTEEEEEETCSH-------------GCHH-------HTTEEEESS--HHHHHTSTTEEEEEES--HHH
T ss_pred HHHHHHHHHhhCCCcccccccccc-------------cccc-------cceEEEeccccchhhhhcccceeeeeccccch
Confidence 588899999999999999998641 1222 67899999999999999999999999999999
Q ss_pred HHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 376 VLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 376 ~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
++||+++|||||++|+++||+.||+++++. |+|+.+++ ..+|.|+|.
T Consensus 354 ~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~ 400 (500)
T PF00201_consen 354 TQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELR 400 (500)
T ss_dssp HHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHH
T ss_pred hhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHH
Confidence 999999999999999999999999999996 99999998 667766653
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.6e-42 Score=334.21 Aligned_cols=350 Identities=13% Similarity=0.096 Sum_probs=219.8
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTE 85 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (427)
|||+|+++|+.||++|+++||++|++ |||+|+|++++.++..++. .|++|..++.............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA------------AGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH------------cCCceeeCCCCHHHHHhhhhhc
Confidence 59999999999999999999999999 9999999999999999998 7788887663210000000000
Q ss_pred C---Ccc--chhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHH
Q 035495 86 N---TEN--LSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLA 160 (427)
Q Consensus 86 ~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (427)
. ... ........+......+.+.+.+.+++ .++|+||+|.+.+++..+|+++|||++.+++++......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 141 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARD------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA 141 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc
Confidence 0 000 00001111112222222222333322 349999999988899999999999999998875421100
Q ss_pred HHhhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcc-----cccceEEEcCccccChh
Q 035495 161 YTSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQS-----FESYGMLCNTAEDIEPG 235 (427)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~ 235 (427)
. .|. . +..............+.. ................. ......+... ++
T Consensus 142 ~------~~~-------~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~ 198 (401)
T cd03784 142 F------PPP-------L---GRANLRLYALLEAELWQD--LLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SP 198 (401)
T ss_pred C------CCc-------c---chHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----Cc
Confidence 0 000 0 000000000000000000 00000000000000000 0011111111 12
Q ss_pred HHHHHHhcCCCCEEEeC-ccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCC-HHHHHHHHHHHHhCCCcEEE
Q 035495 236 ALQWLRNYIKLPVWAIG-PLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTIS-SSQMMELDIGLEASAKSFLW 313 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~ 313 (427)
++...+.+++++..++| ++.... .....+.++..|++. ++++||||+||+.... .+.++.++++++..+.++||
T Consensus 199 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~ 274 (401)
T cd03784 199 AVLPPPPDWPRFDLVTGYGFRDVP--YNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAIL 274 (401)
T ss_pred ccCCCCCCccccCcEeCCCCCCCC--CCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEE
Confidence 22223466777888886 433332 223456778888875 4678999999997754 45678899999999999999
Q ss_pred EEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcc
Q 035495 314 VITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAA 393 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 393 (427)
+++... ... ... +.|+.+.+|+||.++|++++ +||||||+||++|||++|||+|++|+..
T Consensus 275 ~~g~~~------------~~~----~~~--~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 275 SLGWGG------------LGA----EDL--PDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred EccCcc------------ccc----cCC--CCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 998752 000 011 67999999999999999999 8999999999999999999999999999
Q ss_pred cchhhHHHHHhhhceeEEEecCCCcccccccc
Q 035495 394 EQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEV 425 (427)
Q Consensus 394 DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i 425 (427)
||+.||+++++ +|+|+.++. ..+++++|
T Consensus 335 dQ~~~a~~~~~-~G~g~~l~~---~~~~~~~l 362 (401)
T cd03784 335 DQPFWAARVAE-LGAGPALDP---RELTAERL 362 (401)
T ss_pred CcHHHHHHHHH-CCCCCCCCc---ccCCHHHH
Confidence 99999999999 599999987 33555544
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.5e-41 Score=323.53 Aligned_cols=341 Identities=20% Similarity=0.220 Sum_probs=215.5
Q ss_pred eCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccc
Q 035495 11 LPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENL 90 (427)
Q Consensus 11 ~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
+.+|++||++|+++||++|++ +||+|+|++++.+++.+++ .|+.|..++.........+. .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~--~~~~~ 65 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA------------AGAEFVLYGSALPPPDNPPE--NTEEE 65 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH------------cCCEEEecCCcCcccccccc--ccCcc
Confidence 468999999999999999999 9999999999999999999 67888877642111111111 00011
Q ss_pred hhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHHhhhhcCCC
Q 035495 91 SLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTSMWLNLPQ 170 (427)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~ 170 (427)
.......+......+.+.+.+++++ .+||+||+|.+.+++..+|+++|||+|.+++.+.... .+ +....|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~l~~~~~~------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-~~--~~~~~~~ 136 (392)
T TIGR01426 66 PIDIIEKLLDEAEDVLPQLEEAYKG------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE-EF--EEMVSPA 136 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc-cc--ccccccc
Confidence 1111112222222222223333332 3499999999888999999999999999865432110 00 0000000
Q ss_pred CCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHHhcCCCCEEE
Q 035495 171 KKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLRNYIKLPVWA 250 (427)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 250 (427)
..... ...+............+..+....+....-. ... ........+..+ ++++++.+.++++++++
T Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~---~~~--~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~ 204 (392)
T TIGR01426 137 GEGSA--EEGAIAERGLAEYVARLSALLEEHGITTPPV---EFL--AAPRRDLNLVYT-----PKAFQPAGETFDDSFTF 204 (392)
T ss_pred chhhh--hhhccccchhHHHHHHHHHHHHHhCCCCCCH---HHH--hcCCcCcEEEeC-----ChHhCCCccccCCCeEE
Confidence 00000 0000000000000011111111111110000 000 001111223333 34455556778899999
Q ss_pred eCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhcc
Q 035495 251 IGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSE 330 (427)
Q Consensus 251 vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 330 (427)
+||+.... .+...|....+++++||||+||+....++.++++++++.+.+.+++|.++... +
T Consensus 205 ~Gp~~~~~--------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~------~---- 266 (392)
T TIGR01426 205 VGPCIGDR--------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV------D---- 266 (392)
T ss_pred ECCCCCCc--------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC------C----
Confidence 99988653 11223766666788999999998776777888999999999999999987652 0
Q ss_pred CCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeE
Q 035495 331 WLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAV 410 (427)
Q Consensus 331 ~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 410 (427)
.+.+ ...+.|+.+.+|+||.++|++++ +||||||+||++|||++|+|+|++|...||..||+++++ +|+|+
T Consensus 267 --~~~~----~~~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~ 337 (392)
T TIGR01426 267 --PADL----GELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGR 337 (392)
T ss_pred --hhHh----ccCCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEE
Confidence 0111 01167899999999999999999 899999999999999999999999999999999999999 59999
Q ss_pred EEec
Q 035495 411 EMTR 414 (427)
Q Consensus 411 ~l~~ 414 (427)
.++.
T Consensus 338 ~l~~ 341 (392)
T TIGR01426 338 HLPP 341 (392)
T ss_pred Eecc
Confidence 9987
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.9e-40 Score=330.91 Aligned_cols=380 Identities=26% Similarity=0.403 Sum_probs=222.6
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeE---EEcCCCCCCCCCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINL---VELPFCSSDHGLP 81 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~ 81 (427)
+.+++++++|++||++|++.+|+.|++ +||+||++++.......... ... ..+.. ...++....++++
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKS-------KSIKKINPPPFEFLTIPDGLP 75 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-ccc-------eeeeeeecChHHhhhhhhhhc
Confidence 468999999999999999999999999 99999999987765544331 100 11111 1111111111222
Q ss_pred CCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhC-CceEEEecchHHHHHH
Q 035495 82 PNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAG-STNVTFATGGAYVTLA 160 (427)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~ 160 (427)
...+... .................+.+.+.........++|++|+|.+..+...+|...+ ++...+.+..+.....
T Consensus 76 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 152 (496)
T KOG1192|consen 76 EGWEDDD---LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL 152 (496)
T ss_pred cchHHHH---HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc
Confidence 2211110 00001111111111222222222222122233999999998777777777765 9988888877765543
Q ss_pred HHh-hhhcCCCCCCC--CCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhh----hhcccccceEEEcC-cccc
Q 035495 161 YTS-MWLNLPQKKTN--SDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPN----ITQSFESYGMLCNT-AEDI 232 (427)
Q Consensus 161 ~~~-~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~-~~~l 232 (427)
..+ +..+.|..... .+.+.++++..+ +....++................... .........++.++ +..+
T Consensus 153 g~~~~~~~~p~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 230 (496)
T KOG1192|consen 153 GLPSPLSYVPSPFSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFL 230 (496)
T ss_pred CCcCcccccCcccCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEE
Confidence 322 22233332211 122333332221 11111221111110000000111111 11111111223333 3334
Q ss_pred ChhHHHHH-HhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCC--CeEEEEecCCcc---cCCHHHHHHHHHHHHh
Q 035495 233 EPGALQWL-RNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDP--ASVLHISFGSQN---TISSSQMMELDIGLEA 306 (427)
Q Consensus 233 ~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~--~~vV~vs~Gs~~---~~~~~~~~~~~~a~~~ 306 (427)
++...... .....+++++|||+.... ... ....+.+|++..+. .+||||||||+. .++.++..+++.++++
T Consensus 231 n~~~~~~~~~~~~~~~v~~IG~l~~~~--~~~-~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 231 NSNPLLDFEPRPLLPKVIPIGPLHVKD--SKQ-KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred ccCcccCCCCCCCCCCceEECcEEecC--ccc-cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 43322222 233468999999999874 111 11145556655544 489999999998 7999999999999999
Q ss_pred C-CCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhh-hcccCcceeeccCChhhHHHHHhcCC
Q 035495 307 S-AKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEI-LSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 307 ~-~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~l-l~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
+ ++.|+|++.... ...+++++.++ . +.||...+|+||.++ |+|++|++||||||+||++|++++||
T Consensus 308 ~~~~~FiW~~~~~~---------~~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~Gv 375 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDD---------SIYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGV 375 (496)
T ss_pred CCCceEEEEecCCc---------chhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCC
Confidence 9 888999999752 01122333221 1 568888899999998 59999999999999999999999999
Q ss_pred cEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 385 PTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 385 P~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
|+|++|+++||+.||++++++ |.|..+.+
T Consensus 376 P~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~ 404 (496)
T KOG1192|consen 376 PMVCVPLFGDQPLNARLLVRH-GGGGVLDK 404 (496)
T ss_pred ceecCCccccchhHHHHHHhC-CCEEEEeh
Confidence 999999999999999999998 66666666
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-38 Score=304.18 Aligned_cols=343 Identities=17% Similarity=0.190 Sum_probs=211.4
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNT 84 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (427)
+|||+|+..|+.||++|.++||++|.+ +||+|+|++++.+++.+++ .|+.|..++.. +......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~------------ag~~f~~~~~~---~~~~~~~ 64 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA------------AGLAFVAYPIR---DSELATE 64 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH------------hCcceeecccc---CChhhhh
Confidence 479999999999999999999999999 9999999999999999999 55677766632 1111111
Q ss_pred CCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHHHhh
Q 035495 85 ENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAYTSM 164 (427)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (427)
........ ........+......+.+++.+.. +|.++.|.-...+ .+++..++|++.......+.......+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (406)
T COG1819 65 DGKFAGVK-SFRRLLQQFKKLIRELLELLRELE------PDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLP 136 (406)
T ss_pred hhhhhccc-hhHHHhhhhhhhhHHHHHHHHhcc------hhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccC
Confidence 00000000 001022222333444455566555 9999999765545 888889999999776654322211111
Q ss_pred hhcCCCCCCCCCCCCCCC--CCC-Ccccchhccchhhhh-cCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHH
Q 035495 165 WLNLPQKKTNSDEFTLPG--FPE-RCHFHITQLHKYLRM-AGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWL 240 (427)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 240 (427)
+..+ ... +.+..+. .+. .+........+.... .+....+.....+... +...-..++..+.+..
T Consensus 137 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 204 (406)
T COG1819 137 LPPV---GIA-GKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRR--------LFASGPLLEIAYTDVL 204 (406)
T ss_pred cccc---ccc-ccccccccccChhhccccccchhhhhhhhhhhhccccccccchHH--------HhcCCCCccccccccc
Confidence 1111 000 1111111 000 000000000000000 0000000000000000 0111111111111110
Q ss_pred H---hcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 035495 241 R---NYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITP 317 (427)
Q Consensus 241 ~---~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 317 (427)
. ..+|....++||+.... ..+...|. ..++++||+|+||+... .++++.+++++..++.++|..++.
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 205 FPPGDRLPFIGPYIGPLLGEA-------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred cCCCCCCCCCcCccccccccc-------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 0 23345566777777664 23333342 23588999999999876 889999999999999999999876
Q ss_pred CCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchh
Q 035495 318 PVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTY 397 (427)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 397 (427)
.. .....+ +.|+++.+|+||.++|++++ +||||||+||++|||++|||+|++|...||+.
T Consensus 275 ~~-------~~~~~~-----------p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 275 AR-------DTLVNV-----------PDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred cc-------cccccC-----------CCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 21 000111 77999999999999999999 89999999999999999999999999999999
Q ss_pred hHHHHHhhhceeEEEec
Q 035495 398 NSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 398 na~~v~~~lG~G~~l~~ 414 (427)
||.|+++ +|+|+.++.
T Consensus 335 nA~rve~-~G~G~~l~~ 350 (406)
T COG1819 335 NAERVEE-LGAGIALPF 350 (406)
T ss_pred HHHHHHH-cCCceecCc
Confidence 9999999 599999998
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=1.5e-23 Score=197.22 Aligned_cols=300 Identities=20% Similarity=0.276 Sum_probs=181.6
Q ss_pred cEEEEeCCC-CccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 035495 6 EHIGMLPLM-AHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNT 84 (427)
Q Consensus 6 ~~il~~~~p-~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (427)
|||+|...+ +.||+...++||++| + ||+|+|++.....+.+.. . +....++ ++....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~------------~-~~~~~~~------~~~~~~ 58 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP------------R-FPVREIP------GLGPIQ 58 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc------------c-cCEEEcc------CceEec
Confidence 589988866 899999999999999 6 899999998866655543 2 3444443 111111
Q ss_pred CCCccchhhHHHHHH---HHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHHH
Q 035495 85 ENTENLSLDLIINFF---TSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLAY 161 (427)
Q Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 161 (427)
............... ...........+.+++.+ ||+||+|. .+.+..+|+..|||++.+........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~--- 128 (318)
T PF13528_consen 59 ENGRLDRWKTVRNNIRWLARLARRIRREIRWLREFR------PDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH--- 128 (318)
T ss_pred cCCccchHHHHHHHHHhhHHHHHHHHHHHHHHHhcC------CCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc---
Confidence 111110111111111 111222233334444443 99999995 45677889999999999877643210
Q ss_pred HhhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhc--ccccceEEEcCccccChhHHHH
Q 035495 162 TSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQ--SFESYGMLCNTAEDIEPGALQW 239 (427)
Q Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~ 239 (427)
+... +.... .+.++..+.... ...+...+.-++. ..
T Consensus 129 -------------------~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~------ 166 (318)
T PF13528_consen 129 -------------------PNFW----LPWDQ------------DFGRLIERYIDRYHFPPADRRLALSFY-PP------ 166 (318)
T ss_pred -------------------ccCC----cchhh------------hHHHHHHHhhhhccCCcccceecCCcc-cc------
Confidence 0000 00000 000111111111 1222223333332 10
Q ss_pred HHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCC
Q 035495 240 LRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASA-KSFLWVITPP 318 (427)
Q Consensus 240 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~ 318 (427)
.....+..++||+..+... . .. ..+++.|+|++|..... .++++++..+ .++++. +..
T Consensus 167 --~~~~~~~~~~~p~~~~~~~--~--------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 167 --LPPFFRVPFVGPIIRPEIR--E--------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred --ccccccccccCchhccccc--c--------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 1112356678888875410 0 00 11356799999987542 6667777766 666665 543
Q ss_pred CCCCcchhhhccCCchhHHHHhccCCCcEEecccc--chHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC--ccc
Q 035495 319 VGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWA--PQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI--AAE 394 (427)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~v--pq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~--~~D 394 (427)
. .-+ . ..|+.+..|. ...++|+.|+ ++|+|||.||++|++++|+|+|++|. ..+
T Consensus 226 ~-----------~~~-------~--~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 226 A-----------ADP-------R--PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred c-----------ccc-------c--CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCch
Confidence 1 011 1 6688888876 4577999999 89999999999999999999999999 789
Q ss_pred chhhHHHHHhhhceeEEEecCCCccccccccc
Q 035495 395 QTYNSKMLVEEMGVAVEMTRGVQSTIVGHEVK 426 (427)
Q Consensus 395 Q~~na~~v~~~lG~G~~l~~~~~~~~~~~~i~ 426 (427)
|..||+++++ +|+|+.++. ..++++.|+
T Consensus 284 Q~~~a~~l~~-~G~~~~~~~---~~~~~~~l~ 311 (318)
T PF13528_consen 284 QEYNARKLEE-LGLGIVLSQ---EDLTPERLA 311 (318)
T ss_pred HHHHHHHHHH-CCCeEEccc---ccCCHHHHH
Confidence 9999999999 699999987 556655543
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=4.6e-23 Score=194.82 Aligned_cols=293 Identities=18% Similarity=0.156 Sum_probs=181.7
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH--HhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ--YLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPN 83 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (427)
.+|+|.+.++-||++|.+++|++|.+ +||+|.|++...-.+ .+.+ .++.+..++.. ++...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~e~~l~~~------------~g~~~~~~~~~----~l~~~ 64 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGIEKTIIEK------------ENIPYYSISSG----KLRRY 64 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCccccccCcc------------cCCcEEEEecc----CcCCC
Confidence 48999999999999999999999999 999999999755332 1222 45777766521 22111
Q ss_pred CCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcc--hHHHHHHHhCCceEEEecchHHHHHHH
Q 035495 84 TENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFG--WAVDVAKSAGSTNVTFATGGAYVTLAY 161 (427)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~ 161 (427)
. ....+...+..+ ...-....++++.+ ||+||+.-... .+..+|..+++|++..-...
T Consensus 65 ----~--~~~~~~~~~~~~-~~~~~~~~i~~~~k------Pdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------- 124 (352)
T PRK12446 65 ----F--DLKNIKDPFLVM-KGVMDAYVRIRKLK------PDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------- 124 (352)
T ss_pred ----c--hHHHHHHHHHHH-HHHHHHHHHHHhcC------CCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------
Confidence 0 110111111111 11222334566665 99999975333 25688888999998864321
Q ss_pred HhhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHH
Q 035495 162 TSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLR 241 (427)
Q Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 241 (427)
.+++.+ +++... ++. ++.++++. .
T Consensus 125 ------------------~~g~~n-----------------------r~~~~~------a~~-v~~~f~~~--------~ 148 (352)
T PRK12446 125 ------------------TPGLAN-----------------------KIALRF------ASK-IFVTFEEA--------A 148 (352)
T ss_pred ------------------CccHHH-----------------------HHHHHh------hCE-EEEEccch--------h
Confidence 111111 011111 111 22223211 1
Q ss_pred hcCC-CCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCH-HHHHHHHHHHHhCCCcEEEEEcCCC
Q 035495 242 NYIK-LPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISS-SQMMELDIGLEASAKSFLWVITPPV 319 (427)
Q Consensus 242 ~~~~-~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~ 319 (427)
..++ .+++++|+.+.+. ......+...+.+...+++++|+|..||.+...- +.+..++..+.. +.+++|.++.+.
T Consensus 149 ~~~~~~k~~~tG~Pvr~~--~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~ 225 (352)
T PRK12446 149 KHLPKEKVIYTGSPVREE--VLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN 225 (352)
T ss_pred hhCCCCCeEEECCcCCcc--cccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch
Confidence 1222 5788999988764 1111122222223334467899999999986443 344455555432 488999998752
Q ss_pred CCCcchhhhccCCchhHHHHhccCCCcEEecccc-c-hHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCc-----
Q 035495 320 GFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWA-P-QLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIA----- 392 (427)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~v-p-q~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~----- 392 (427)
+.+ .... -.++.+..|+ + ..+++++++ ++|||||.+|++|++++|+|+|++|+.
T Consensus 226 ------------~~~-~~~~----~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 226 ------------LDD-SLQN----KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred ------------HHH-HHhh----cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 111 0100 1244455787 4 467899999 899999999999999999999999984
Q ss_pred ccchhhHHHHHhhhceeEEEec
Q 035495 393 AEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 393 ~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
.||..||..+++. |+|..+..
T Consensus 287 ~~Q~~Na~~l~~~-g~~~~l~~ 307 (352)
T PRK12446 287 GDQILNAESFERQ-GYASVLYE 307 (352)
T ss_pred chHHHHHHHHHHC-CCEEEcch
Confidence 4899999999995 99999976
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.87 E-value=3.7e-20 Score=173.86 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc--h
Q 035495 279 ASVLHISFGSQNTISSSQMMELDIGLEASAK-SFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP--Q 355 (427)
Q Consensus 279 ~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp--q 355 (427)
.+.|+|.+|+... +.+++++++.+. .++ ++... ...+.. +.|+.+.+|.| .
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~~~~-----------~~~~~~-------~~~v~~~~~~~~~~ 241 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIANVKFV--CYSYE-----------VAKNSY-------NENVEIRRITTDNF 241 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCCeEEE--EeCCC-----------CCcccc-------CCCEEEEECChHHH
Confidence 4567787877532 456777777553 333 22211 011111 45888889997 4
Q ss_pred HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcc--cchhhHHHHHhhhceeEEEecCC
Q 035495 356 LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAA--EQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 356 ~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
.++|+.++ ++|||||++|++||+++|+|++++|... ||..||+.+++. |+|+.++.++
T Consensus 242 ~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~ 301 (321)
T TIGR00661 242 KELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKE 301 (321)
T ss_pred HHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhh
Confidence 66788888 8999999999999999999999999855 899999999995 9999998743
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.7e-18 Score=161.91 Aligned_cols=304 Identities=17% Similarity=0.204 Sum_probs=185.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCC-EEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGF-KITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNT 84 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (427)
++|+++..++-||+.|.++|+++|.+ +|+ +|.++.+....+...... .++.++.++.. .+....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~~l~~~----------~~~~~~~I~~~----~~~~~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEAFLVKQ----------YGIEFELIPSG----GLRRKG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHh-hCccEEEEecccccceeeeccc----------cCceEEEEecc----cccccC
Confidence 36899999999999999999999999 999 588886654433322211 45777766632 222211
Q ss_pred CCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcc--hHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 85 ENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFG--WAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
.... +...+.. .........++++.+ ||+||.--.+. .+..+|..+|||.+..-.-
T Consensus 66 -~~~~-----~~~~~~~-~~~~~~a~~il~~~k------Pd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn--------- 123 (357)
T COG0707 66 -SLKL-----LKAPFKL-LKGVLQARKILKKLK------PDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN--------- 123 (357)
T ss_pred -cHHH-----HHHHHHH-HHHHHHHHHHHHHcC------CCEEEecCCccccHHHHHHHhCCCCEEEEecC---------
Confidence 0111 1111111 122344467777776 99999853333 4567888889999986332
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHHh
Q 035495 163 SMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLRN 242 (427)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 242 (427)
..++..+ +. .... + ..+..+++..+. .
T Consensus 124 ----------------~~~G~an------k~-----------------~~~~------a-~~V~~~f~~~~~-------~ 150 (357)
T COG0707 124 ----------------AVPGLAN------KI-----------------LSKF------A-KKVASAFPKLEA-------G 150 (357)
T ss_pred ----------------CCcchhH------HH-----------------hHHh------h-ceeeeccccccc-------c
Confidence 1112111 00 0000 0 012222321110 0
Q ss_pred cCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 035495 243 YIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTIS-SSQMMELDIGLEASAKSFLWVITPPVGF 321 (427)
Q Consensus 243 ~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 321 (427)
.-+.+.+.+|-..... -.. .+.......... ++++|+|.-||.+... .+.+..++..+.+ +..+++.++.+.
T Consensus 151 ~~~~~~~~tG~Pvr~~--~~~-~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-- 223 (357)
T COG0707 151 VKPENVVVTGIPVRPE--FEE-LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-- 223 (357)
T ss_pred CCCCceEEecCcccHH--hhc-cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--
Confidence 0013577777655443 111 222222222222 5789999999997633 2334444444444 578888887651
Q ss_pred CcchhhhccCCchhHHHHhccCCCc-EEeccccch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCc----ccc
Q 035495 322 DLRAEFRSEWLPEGFEERIKEIKQG-LLVRNWAPQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIA----AEQ 395 (427)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~~-v~~~~~vpq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~----~DQ 395 (427)
.+....... ..+ +.+..|..+ ..+++-++ ++||+.|.+|+.|+++.|+|+|.+|.. .||
T Consensus 224 -----------~~~~~~~~~--~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 224 -----------LEELKSAYN--ELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred -----------HHHHHHHHh--hcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 123333333 333 778888875 56888888 999999999999999999999999972 389
Q ss_pred hhhHHHHHhhhceeEEEecCCCcccccccc
Q 035495 396 TYNSKMLVEEMGVAVEMTRGVQSTIVGHEV 425 (427)
Q Consensus 396 ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i 425 (427)
..||..++++ |.|+.++. ..+|.|++
T Consensus 289 ~~NA~~l~~~-gaa~~i~~---~~lt~~~l 314 (357)
T COG0707 289 EYNAKFLEKA-GAALVIRQ---SELTPEKL 314 (357)
T ss_pred HHHHHHHHhC-CCEEEecc---ccCCHHHH
Confidence 9999999997 99999998 44555544
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.71 E-value=2.3e-15 Score=143.95 Aligned_cols=294 Identities=17% Similarity=0.156 Sum_probs=167.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch--HHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI--QYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPN 83 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (427)
|||+|+..+..||...++.||++|.+ +||+|++++.+... ...+. .+++++.++.. ++...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~~~~~~------------~g~~~~~~~~~----~~~~~ 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKK-RGWEVLYLGTARGMEARLVPK------------AGIEFHFIPSG----GLRRK 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHh-CCCEEEEEECCCchhhhcccc------------CCCcEEEEecc----CcCCC
Confidence 79999999888999999999999999 99999999975521 11222 35666666532 11111
Q ss_pred CCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCC--cchHHHHHHHhCCceEEEecchHHHHHHH
Q 035495 84 TENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTF--FGWAVDVAKSAGSTNVTFATGGAYVTLAY 161 (427)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 161 (427)
.. ...+..... +......+.+++++.+ ||+|++... ...+..++...++|++......
T Consensus 65 ----~~--~~~l~~~~~-~~~~~~~~~~~ik~~~------pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------- 124 (357)
T PRK00726 65 ----GS--LANLKAPFK-LLKGVLQARKILKRFK------PDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------- 124 (357)
T ss_pred ----Ch--HHHHHHHHH-HHHHHHHHHHHHHhcC------CCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------
Confidence 00 000001101 1111223344555544 999999953 2234566777899998642110
Q ss_pred HhhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHH
Q 035495 162 TSMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLR 241 (427)
Q Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 241 (427)
.++ . ..++.. ..++.+++.+...+ ..
T Consensus 125 ------------------~~~----------~-------------~~r~~~------~~~d~ii~~~~~~~-----~~-- 150 (357)
T PRK00726 125 ------------------VPG----------L-------------ANKLLA------RFAKKVATAFPGAF-----PE-- 150 (357)
T ss_pred ------------------Ccc----------H-------------HHHHHH------HHhchheECchhhh-----hc--
Confidence 000 0 000000 01122222211110 00
Q ss_pred hcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCC--cEEEEEcCCC
Q 035495 242 NYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAK--SFLWVITPPV 319 (427)
Q Consensus 242 ~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~ 319 (427)
.-+.+++++|+..... .... +..-.+ +...++.++|++..|+... ......+.+++++... .++|.++...
T Consensus 151 -~~~~~i~vi~n~v~~~--~~~~-~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~ 223 (357)
T PRK00726 151 -FFKPKAVVTGNPVREE--ILAL-AAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD 223 (357)
T ss_pred -cCCCCEEEECCCCChH--hhcc-cchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc
Confidence 1236788888776543 1111 111011 1212345567766555421 1222233366655433 4556666552
Q ss_pred CCCcchhhhccCCchhHHHHhccCCCcEEeccccc-hHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC----ccc
Q 035495 320 GFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP-QLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI----AAE 394 (427)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp-q~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~----~~D 394 (427)
.+.+.+... ..-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|. .+|
T Consensus 224 -------------~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~ 287 (357)
T PRK00726 224 -------------LEEVRAAYA-AGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDH 287 (357)
T ss_pred -------------HHHHHHHhh-cCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCc
Confidence 122222111 133478889984 578999999 79999999999999999999999997 468
Q ss_pred chhhHHHHHhhhceeEEEec
Q 035495 395 QTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 395 Q~~na~~v~~~lG~G~~l~~ 414 (427)
|..|+..+.+. |.|+.++.
T Consensus 288 ~~~~~~~i~~~-~~g~~~~~ 306 (357)
T PRK00726 288 QTANARALVDA-GAALLIPQ 306 (357)
T ss_pred HHHHHHHHHHC-CCEEEEEc
Confidence 99999999995 99999987
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=3.1e-15 Score=136.99 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=79.1
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchH
Q 035495 279 ASVLHISFGSQNTISSSQMMELDIGLEA--SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQL 356 (427)
Q Consensus 279 ~~vV~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~ 356 (427)
.+.|+|+||..-. ......+++++.+ .+.++.+++|.+. +..+.+...... ..|+.+..++++.
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~-----------~~~~~l~~~~~~-~~~i~~~~~~~~m 235 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN-----------PNLDELKKFAKE-YPNIILFIDVENM 235 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC-----------cCHHHHHHHHHh-CCCEEEEeCHHHH
Confidence 3569999996543 2244556666665 3567888888752 122333322221 4588899999975
Q ss_pred -hhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHH
Q 035495 357 -EILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKML 402 (427)
Q Consensus 357 -~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 402 (427)
.+++.++ ++||+|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 236 ~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 236 AELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred HHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 7999999 8999999 99999999999999999999999999753
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.67 E-value=1.5e-14 Score=137.98 Aligned_cols=297 Identities=20% Similarity=0.181 Sum_probs=168.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH--HhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ--YLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNT 84 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (427)
||+|...+..||+...+.||+.|.+ +||+|++++...... .... .++++..++.. .+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE-RGAEVLFLGTKRGLEARLVPK------------AGIPLHTIPVG----GLRRK- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh-CCCEEEEEECCCcchhhcccc------------cCCceEEEEec----CcCCC-
Confidence 5889999999999999999999999 999999998754211 1111 34666666532 11110
Q ss_pred CCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCC--cchHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 85 ENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTF--FGWAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
.. ...+..+... ......+..++++.+ ||+|++... ...+..+|...|+|++..... .
T Consensus 63 ---~~--~~~~~~~~~~-~~~~~~~~~~i~~~~------pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~------- 122 (350)
T cd03785 63 ---GS--LKKLKAPFKL-LKGVLQARKILKKFK------PDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A------- 122 (350)
T ss_pred ---Ch--HHHHHHHHHH-HHHHHHHHHHHHhcC------CCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C-------
Confidence 00 0001111111 111223445555544 999998742 334567788889998853110 0
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHHh
Q 035495 163 SMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLRN 242 (427)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 242 (427)
++. . ..++. ...++.+++.+-...+ +
T Consensus 123 --------------------~~~---~-----------------~~~~~------~~~~~~vi~~s~~~~~-----~--- 148 (350)
T cd03785 123 --------------------VPG---L-----------------ANRLL------ARFADRVALSFPETAK-----Y--- 148 (350)
T ss_pred --------------------Ccc---H-----------------HHHHH------HHhhCEEEEcchhhhh-----c---
Confidence 000 0 00000 1112333433321111 1
Q ss_pred cCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 035495 243 YIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTIS-SSQMMELDIGLEASAKSFLWVITPPVGF 321 (427)
Q Consensus 243 ~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 321 (427)
..+.++.++|+..... .....+ . .+.+...+++.+|++..|+..... .+.+.+.+..+.+.+..+++.++...
T Consensus 149 ~~~~~~~~i~n~v~~~--~~~~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-- 222 (350)
T cd03785 149 FPKDKAVVTGNPVREE--ILALDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-- 222 (350)
T ss_pred CCCCcEEEECCCCchH--Hhhhhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--
Confidence 1135778888765432 101111 1 222222234556766666654211 12222333344333445566666541
Q ss_pred CcchhhhccCCchhHHHHhccCCCcEEecccc-chHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC----cccch
Q 035495 322 DLRAEFRSEWLPEGFEERIKEIKQGLLVRNWA-PQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI----AAEQT 396 (427)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~v-pq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~ 396 (427)
.+.+.+...+...|+.+.+|+ ....+|+.++ ++|+++|.+++.||+++|+|+|++|. ..+|.
T Consensus 223 -----------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 223 -----------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred -----------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 122222222113588888998 5577999999 79999999999999999999999986 46789
Q ss_pred hhHHHHHhhhceeEEEecC
Q 035495 397 YNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 397 ~na~~v~~~lG~G~~l~~~ 415 (427)
.|+..+.+. |.|+.++.+
T Consensus 290 ~~~~~l~~~-g~g~~v~~~ 307 (350)
T cd03785 290 ANARALVKA-GAAVLIPQE 307 (350)
T ss_pred HhHHHHHhC-CCEEEEecC
Confidence 999999995 999999863
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.64 E-value=3.6e-14 Score=126.75 Aligned_cols=323 Identities=18% Similarity=0.191 Sum_probs=180.2
Q ss_pred CCcEEEEeC--CCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 4 ENEHIGMLP--LMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 4 ~~~~il~~~--~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
+.+||+|++ ..+.||+...+.||++|+++ +|.+|++++......-..- . .+++|+.+|--. ..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~------~-----~gVd~V~LPsl~---k~ 73 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG------P-----AGVDFVKLPSLI---KG 73 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC------c-----ccCceEecCceE---ec
Confidence 356999999 56889999999999999994 4999999997543322211 1 679999888321 11
Q ss_pred CCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHHHHHH
Q 035495 81 PPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAYVTLA 160 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (427)
..+.....+...+ ..+..+....-+....+.++ ||++|+|.+ +.+.. -+.+ | +.
T Consensus 74 ~~G~~~~~d~~~~----l~e~~~~Rs~lil~t~~~fk------PDi~IVd~~-P~Glr-~EL~--p-----------tL- 127 (400)
T COG4671 74 DNGEYGLVDLDGD----LEETKKLRSQLILSTAETFK------PDIFIVDKF-PFGLR-FELL--P-----------TL- 127 (400)
T ss_pred CCCceeeeecCCC----HHHHHHHHHHHHHHHHHhcC------CCEEEEecc-ccchh-hhhh--H-----------HH-
Confidence 1121111111111 11111222444556666666 999999976 43310 0000 0 00
Q ss_pred HHhhhhcCCCCCCCCCCCCCCCCCCCcccchh---ccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHH
Q 035495 161 YTSMWLNLPQKKTNSDEFTLPGFPERCHFHIT---QLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGAL 237 (427)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 237 (427)
.|+-... . . ..+..+ +.+.......+.+...+...+.+ +.+++...+++-.+..
T Consensus 128 -----~yl~~~~------t---~---~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~~~ 184 (400)
T COG4671 128 -----EYLKTTG------T---R---LVLGLRSIRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDPLT 184 (400)
T ss_pred -----HHHhhcC------C---c---ceeehHhhhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccChhh
Confidence 0000000 0 0 001111 22211111111122222222222 3344443333221110
Q ss_pred HH-HHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHh-CCCc--EEE
Q 035495 238 QW-LRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEA-SAKS--FLW 313 (427)
Q Consensus 238 ~~-~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~--~i~ 313 (427)
.+ .......++.|+|.+ ..+ -+..+.+ |.. .+++--|+||-|.... ..+.+...++|-.. .+.+ .++
T Consensus 185 ~~~~~~~i~~k~~ytG~v-q~~-~~~~~~p-----~~~-~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~i 255 (400)
T COG4671 185 EFPFAPAIRAKMRYTGFV-QRS-LPHLPLP-----PHE-APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLI 255 (400)
T ss_pred cCCccHhhhhheeEeEEe-ecc-CcCCCCC-----CcC-CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEE
Confidence 00 112233688999999 221 0111111 111 1334468888776532 34555665555544 3444 666
Q ss_pred EEcCCCCCCcchhhhccCCchhHHHHhc-cC--CCcEEeccccch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEec
Q 035495 314 VITPPVGFDLRAEFRSEWLPEGFEERIK-EI--KQGLLVRNWAPQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~v~~~~~vpq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~ 389 (427)
.+|+. +|+.....+. +. .+++.+..|-.+ ..++.-++ ++|+-||.||++|-|++|+|.+++
T Consensus 256 vtGP~-------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 256 VTGPF-------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred EeCCC-------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEe
Confidence 66665 6655443322 22 378889899764 77888888 899999999999999999999999
Q ss_pred cCc---ccchhhHHHHHhhhceeEEEec
Q 035495 390 PIA---AEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 390 P~~---~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
|.. .+|-.-|.|+++ ||+.=+|.+
T Consensus 321 Pr~~p~eEQliRA~Rl~~-LGL~dvL~p 347 (400)
T COG4671 321 PRAAPREEQLIRAQRLEE-LGLVDVLLP 347 (400)
T ss_pred ccCCCcHHHHHHHHHHHh-cCcceeeCc
Confidence 984 499999999999 899999988
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.51 E-value=3.2e-12 Score=121.84 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=50.9
Q ss_pred chHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCc---ccchhhHHHHHhhhceeEEEec
Q 035495 354 PQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIA---AEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 354 pq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
....+++.++ ++|+++|.+++.||+++|+|+|++|.. .+|..|+..+++. |.|..++.
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~ 303 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ 303 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec
Confidence 4577899999 799999988999999999999999863 4688899999995 99999876
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.45 E-value=8.3e-12 Score=120.45 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccch-
Q 035495 278 PASVLHISFGSQNTISSSQMMELDIGLEA-SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQ- 355 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq- 355 (427)
++++|++..|+.... ..+..+++++.+ .+.++++..+.+. .+-+.+.......+.|+.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-----------~~~~~l~~~~~~~~~~v~~~g~~~~~ 267 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-----------ALKQSLEDLQETNPDALKVFGYVENI 267 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-----------HHHHHHHHHHhcCCCcEEEEechhhH
Confidence 456777777776532 234556667665 3567777766431 0112222222211457999999987
Q ss_pred HhhhcccCcceeeccCChhhHHHHHhcCCcEEec-cCcccchhhHHHHHhhhceeEEEe
Q 035495 356 LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW-PIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 356 ~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
.++++.++ ++|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |.|+...
T Consensus 268 ~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~ 323 (380)
T PRK13609 268 DELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR 323 (380)
T ss_pred HHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC
Confidence 47999999 799999988999999999999985 6777788999999995 9998753
No 38
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=1.1e-14 Score=123.29 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=82.5
Q ss_pred EEEEecCCcccCC-HHHHHHHHHHHHh--CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc-hH
Q 035495 281 VLHISFGSQNTIS-SSQMMELDIGLEA--SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP-QL 356 (427)
Q Consensus 281 vV~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp-q~ 356 (427)
+|+|+.||..... .+.+..++..+.. .+.++++.+|... . +...........++.+.+|++ ..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~------~-------~~~~~~~~~~~~~v~~~~~~~~m~ 67 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN------Y-------EELKIKVENFNPNVKVFGFVDNMA 67 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE------C-------HHHCCCHCCTTCCCEEECSSSSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc------H-------HHHHHHHhccCCcEEEEechhhHH
Confidence 4899999886421 1222233333333 3578899988762 0 000000110025788899999 78
Q ss_pred hhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcc----cchhhHHHHHhhhceeEEEecC
Q 035495 357 EILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAA----EQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 357 ~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
++++.++ ++|||||.||++|++++|+|+|++|... +|..||..+++. |.|+.+...
T Consensus 68 ~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~ 127 (167)
T PF04101_consen 68 ELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES 127 (167)
T ss_dssp HHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC
T ss_pred HHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc
Confidence 8999999 8999999999999999999999999988 999999999996 999999873
No 39
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.43 E-value=6.3e-13 Score=108.96 Aligned_cols=125 Identities=20% Similarity=0.165 Sum_probs=81.8
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCC
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENT 87 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 87 (427)
|+|++.|+.||++|+++||++|++ |||+|++++++.+++.+++ .|++|.+++.+ ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~------------~Gl~~~~~~~~---------~~~~ 58 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA------------AGLEFVPIPGD---------SRLP 58 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH------------TT-EEEESSSC---------GGGG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc------------cCceEEEecCC---------cCcC
Confidence 789999999999999999999999 9999999999999999988 77999987732 0000
Q ss_pred cc-chhhHHHHHHHHhcCCcHHHHHHHHhhhhh----c--CCCCcEEEecCCcchHHHHHHHhCCceEEEecchH
Q 035495 88 EN-LSLDLIINFFTSSQSPKTPLYNLLMDIKEK----A--GKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGA 155 (427)
Q Consensus 88 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~--~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (427)
.. ........+... ......+.+.+++.... . ....|+++.+.....+..+|+++|||++.....+.
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 59 RSLEPLANLRRLARL-IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred cccchhhhhhhHHHH-hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00 000000011111 01122223333332211 0 12378888898777889999999999999887654
No 40
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.40 E-value=6.1e-12 Score=120.87 Aligned_cols=311 Identities=12% Similarity=0.067 Sum_probs=164.3
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTE 85 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (427)
+||+|...++.||++|. +|+++|++ +|++|.|++... ..+++.+.+ ..+++..++.. ++.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~-~~~~~~~~g~gg--~~m~~~g~~--------~~~~~~~l~v~----G~~---- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKE-HYPNARFIGVAG--PRMAAEGCE--------VLYSMEELSVM----GLR---- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHh-cCCCcEEEEEcc--HHHHhCcCc--------cccChHHhhhc----cHH----
Confidence 68999999999999999 99999999 999999998642 245553321 11333322211 111
Q ss_pred CCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEe-cCCcch--HHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 86 NTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIIT-DTFFGW--AVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~-D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
..+..+.. +......+..++++.+ ||+||. |.-... ....|+.+|||++.+.+-..
T Consensus 66 -------~~l~~~~~-~~~~~~~~~~~l~~~k------Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~------- 124 (385)
T TIGR00215 66 -------EVLGRLGR-LLKIRKEVVQLAKQAK------PDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV------- 124 (385)
T ss_pred -------HHHHHHHH-HHHHHHHHHHHHHhcC------CCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH-------
Confidence 01111111 1122235566666655 999995 642222 22478889999987532100
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHHh
Q 035495 163 SMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLRN 242 (427)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 242 (427)
|. ++... .+.+.+. ++.+++ ++ ..+.+++ ..
T Consensus 125 --wa----------------------w~~~~--------------~r~l~~~------~d~v~~-~~-~~e~~~~---~~ 155 (385)
T TIGR00215 125 --WA----------------------WRKWR--------------AKKIEKA------TDFLLA-IL-PFEKAFY---QK 155 (385)
T ss_pred --hh----------------------cCcch--------------HHHHHHH------HhHhhc-cC-CCcHHHH---Hh
Confidence 00 11000 0011111 111111 12 1222221 22
Q ss_pred cCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcC
Q 035495 243 YIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEAS-----AKSFLWVITP 317 (427)
Q Consensus 243 ~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~ 317 (427)
.+.+..+||.-..+..........+..+-+.-.+++++|.+--||....-......++++++.. +.++++....
T Consensus 156 -~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~ 234 (385)
T TIGR00215 156 -KNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVN 234 (385)
T ss_pred -cCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 2346677886654331000012222222232334567888877777543233444555554442 3456555443
Q ss_pred CCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEec----cCcc
Q 035495 318 PVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW----PIAA 393 (427)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~----P~~~ 393 (427)
.. .. ..+ +.+..... ....+....+ ....+++.++ ++|+-.|..|+ |++++|+|+|++ |+..
T Consensus 235 ~~------~~--~~~-~~~~~~~~-~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 235 FK------RR--LQF-EQIKAEYG-PDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred ch------hH--HHH-HHHHHHhC-CCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHH
Confidence 31 00 000 11111111 0122332222 3456888999 89999999988 999999999999 7632
Q ss_pred ---------cchhhHHHHHhhhceeEEEecCCCcccccccc
Q 035495 394 ---------EQTYNSKMLVEEMGVAVEMTRGVQSTIVGHEV 425 (427)
Q Consensus 394 ---------DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~i 425 (427)
+|..|+..+++. ++...+-. +..|++.|
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l 337 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANR-LLVPELLQ---EECTPHPL 337 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCHHHH
Confidence 378899999996 98888765 34454443
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.22 E-value=1e-09 Score=106.06 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=83.9
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc
Q 035495 277 DPASVLHISFGSQNTISSSQMMELDIGLEA--SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP 354 (427)
Q Consensus 277 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp 354 (427)
+++++|++..|+... ...+..+++++.+ .+.++++.++.+. .+-+.+..... ...++.+.+|+.
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~-----------~l~~~l~~~~~-~~~~v~~~G~~~ 265 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK-----------ELKRSLTAKFK-SNENVLILGYTK 265 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH-----------HHHHHHHHHhc-cCCCeEEEeccc
Confidence 346688888888763 1334444554332 3467767766541 01122222221 135788889997
Q ss_pred h-HhhhcccCcceeeccCChhhHHHHHhcCCcEEec-cCcccchhhHHHHHhhhceeEEEec
Q 035495 355 Q-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW-PIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 355 q-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
+ ..+++.++ ++|+..|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+..+.
T Consensus 266 ~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~~ 324 (391)
T PRK13608 266 HMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIADT 324 (391)
T ss_pred hHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeCC
Confidence 5 46899999 799988888999999999999998 7767778999999996 99987653
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.17 E-value=1.5e-09 Score=104.74 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=32.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|+|+|+..++.||++|.+ ++++|++ +++++.++...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~-~~~~~~~~~~~ 37 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKA-RAPNLEFVGVG 37 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHh-cCCCcEEEEEc
Confidence 589999999999999999 9999999 88888888743
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.01 E-value=1.9e-08 Score=97.02 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=90.5
Q ss_pred CCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCH-HHHHHHHHHHH-----hCCCcEEEEEcCCC
Q 035495 246 LPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISS-SQMMELDIGLE-----ASAKSFLWVITPPV 319 (427)
Q Consensus 246 ~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~a~~-----~~~~~~i~~~~~~~ 319 (427)
.+++.+|.-....-.........+.+-+.-.+++++|++..|+...... +.++.+...+. ..+.++++.+|.+.
T Consensus 173 ~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~ 252 (382)
T PLN02605 173 SQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK 252 (382)
T ss_pred HHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH
Confidence 4566677554321001111222333333333456677777666543222 22333332221 23456677777541
Q ss_pred CCCcchhhhccCCchhHHHHhccCCCcEEeccccch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccch-h
Q 035495 320 GFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQT-Y 397 (427)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~-~ 397 (427)
.+-+.+..... ..++.+.+|+++ .++++.++ ++|+.+|.+|+.||+++|+|+|+.+....|. .
T Consensus 253 -----------~~~~~L~~~~~--~~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~g 317 (382)
T PLN02605 253 -----------KLQSKLESRDW--KIPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEG 317 (382)
T ss_pred -----------HHHHHHHhhcc--cCCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchh
Confidence 01111211111 346788899985 66899999 7999999999999999999999998766675 7
Q ss_pred hHHHHHhhhceeEEE
Q 035495 398 NSKMLVEEMGVAVEM 412 (427)
Q Consensus 398 na~~v~~~lG~G~~l 412 (427)
|+..+.+. |.|+.+
T Consensus 318 n~~~i~~~-g~g~~~ 331 (382)
T PLN02605 318 NVPYVVDN-GFGAFS 331 (382)
T ss_pred hHHHHHhC-Cceeec
Confidence 99999995 999876
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=6.3e-08 Score=84.69 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=85.4
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc-hHhhh
Q 035495 281 VLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP-QLEIL 359 (427)
Q Consensus 281 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp-q~~ll 359 (427)
-|+|++|.. .+....-+++..+.+.++.+-+++++.. +..+.++.+..+ .+|+...-... ...|+
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~-----------p~l~~l~k~~~~-~~~i~~~~~~~dma~LM 225 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSN-----------PTLKNLRKRAEK-YPNINLYIDTNDMAELM 225 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCC-----------cchhHHHHHHhh-CCCeeeEecchhHHHHH
Confidence 499999954 2344666788888888877777777542 233444444443 33444433333 45699
Q ss_pred cccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 360 SHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 360 ~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
+.++ +.|+-|| .|+.|++.-|+|.+++|+...|---|...+. +|+-..+..
T Consensus 226 ke~d--~aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~ 276 (318)
T COG3980 226 KEAD--LAISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY 276 (318)
T ss_pred Hhcc--hheeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC
Confidence 9999 8999888 5999999999999999999999999999999 698877753
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=4.4e-07 Score=86.40 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=50.6
Q ss_pred CCcEEeccccchHh---hhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..|+.+.+|+++.+ +++.++ ++|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|..++.+
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEPG 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCCC
Confidence 66889999999765 788888 6776654 47899999999999987754 456667774 888888763
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.98 E-value=7.8e-07 Score=88.20 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=68.0
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHh---
Q 035495 282 LHISFGSQNTISSSQMMELDIGLEAS-AKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLE--- 357 (427)
Q Consensus 282 V~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~--- 357 (427)
+++..|++.. ...+..+++++++. +.+++ .+|.+. ..+.+..... ..++.+.+|+++.+
T Consensus 265 ~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~------------~~~~l~~~~~--~~~V~f~G~v~~~ev~~ 327 (465)
T PLN02871 265 LIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP------------YREELEKMFA--GTPTVFTGMLQGDELSQ 327 (465)
T ss_pred EEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh------------HHHHHHHHhc--cCCeEEeccCCHHHHHH
Confidence 4455577643 33456677777774 45554 444431 2233333334 55788889998654
Q ss_pred hhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCcccchhhHHHHHh---hhceeEEEecC
Q 035495 358 ILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVE---EMGVAVEMTRG 415 (427)
Q Consensus 358 ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~lG~G~~l~~~ 415 (427)
+++.++ +||.-.. .+++.||+++|+|+|+.... .....+.+ . +.|+.++.+
T Consensus 328 ~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~ 385 (465)
T PLN02871 328 AYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG 385 (465)
T ss_pred HHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC
Confidence 777888 5664332 35789999999999987643 23344444 5 778888763
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.73 E-value=1.1e-05 Score=76.60 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=48.0
Q ss_pred CCcEEeccccchHh---hhcccCcceeec----cCCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLS----HCGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..++.+.+|+++.+ ++..+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+.+. +.|..++.+
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCC
Confidence 57899999997654 5888884 552 2343 589999999999998654 4566777774 678888774
No 48
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.66 E-value=9.4e-06 Score=78.36 Aligned_cols=145 Identities=19% Similarity=0.130 Sum_probs=87.9
Q ss_pred CCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHh----CCCcEEEEEcCCCC
Q 035495 245 KLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEA----SAKSFLWVITPPVG 320 (427)
Q Consensus 245 ~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~----~~~~~i~~~~~~~~ 320 (427)
+.++.++|....+.. ...... . + .++.++|.+--||-...-.+.+..++++++. .+..|++.+....
T Consensus 179 g~k~~~vGnPv~d~l--~~~~~~---~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~- 249 (396)
T TIGR03492 179 GVRASYLGNPMMDGL--EPPERK---P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL- 249 (396)
T ss_pred CCeEEEeCcCHHhcC--cccccc---c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC-
Confidence 358999997776651 111111 1 1 2235578887788754333344455555555 3677888874432
Q ss_pred CCcchhhhccCCchhHHHHhcc--C--------------CCcEEeccccc-hHhhhcccCcceeeccCChhhHHHHHhcC
Q 035495 321 FDLRAEFRSEWLPEGFEERIKE--I--------------KQGLLVRNWAP-QLEILSHKSTGAFLSHCGWNSVLESLSQG 383 (427)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~--~--------------~~~v~~~~~vp-q~~ll~~~~v~~~I~HgG~~s~~eal~~G 383 (427)
..+.+...... . ..++.+..+.. ..++++.++ ++|+-.|..| .|+...|
T Consensus 250 -----------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg 315 (396)
T TIGR03492 250 -----------SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLG 315 (396)
T ss_pred -----------CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhC
Confidence 00111111100 0 12344545543 467899999 8999999777 9999999
Q ss_pred CcEEeccCcccchhhHHHHHhhh----ceeEEEec
Q 035495 384 LPTIGWPIAAEQTYNSKMLVEEM----GVAVEMTR 414 (427)
Q Consensus 384 vP~v~~P~~~DQ~~na~~v~~~l----G~G~~l~~ 414 (427)
+|+|++|.-..|. ||..+++ . |-++.+..
T Consensus 316 ~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~ 348 (396)
T TIGR03492 316 KPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS 348 (396)
T ss_pred CCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC
Confidence 9999999777776 8877665 3 66666654
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.65 E-value=2.2e-05 Score=74.76 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
..++.+.+++|+.+ ++..+++ +|.. +...++.||+++|+|+|+.. ....+..+.+. +.|..++.++
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCCC
Confidence 56899999999755 6778884 5533 33478999999999999865 44566777774 7888887643
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.64 E-value=1.3e-05 Score=77.54 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..++.+.+|+|+.+ ++..++ ++++. |-..++.||+++|+|+|+... ......+++. +.|..++.+
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDPR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCCC
Confidence 46899999999765 478888 56643 223689999999999998764 3456667774 789888763
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.59 E-value=1.2e-05 Score=76.97 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCcEEeccccchHh---hhcccCcceeeccCC---------hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEE
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSHCG---------WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVE 411 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~HgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~ 411 (427)
..|+.+.+++++.+ ++..++ ++|.... .+++.||+++|+|+|+.+..+.+ ..+.+. +.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~~-~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEEA-GAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhccC-CcceE
Confidence 56888889998654 677888 4553222 23479999999999998865433 333442 56666
Q ss_pred Eec
Q 035495 412 MTR 414 (427)
Q Consensus 412 l~~ 414 (427)
++.
T Consensus 347 ~~~ 349 (394)
T cd03794 347 VPP 349 (394)
T ss_pred eCC
Confidence 655
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.51 E-value=2.3e-05 Score=74.14 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCcEEeccccchH---hhhcccCcceeec----cCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLS----HCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..++.+.+++++. .++..++ ++|. -|..+++.||+++|+|+|+.+. ...+..+.+. +.|+.++.+
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~ 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC
Confidence 6788999999754 4678888 4553 2556799999999999998765 4566677764 788888774
No 53
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.48 E-value=0.00015 Score=67.75 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=68.3
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEEeCCc--chHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhH
Q 035495 17 GHLIPFLALAKQIHRSTGFKITIANTPL--NIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDL 94 (427)
Q Consensus 17 GH~~P~l~La~~L~~~~Gh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (427)
-|+.-+..+.++|.+ +||+|.+.+-+. ..+.+.. .|+.+..+.-. + . . .
T Consensus 11 ~hvhfFk~~I~eL~~-~GheV~it~R~~~~~~~LL~~------------yg~~y~~iG~~----g--~------~----~ 61 (335)
T PF04007_consen 11 AHVHFFKNIIRELEK-RGHEVLITARDKDETEELLDL------------YGIDYIVIGKH----G--D------S----L 61 (335)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEEEeccchHHHHHHH------------cCCCeEEEcCC----C--C------C----H
Confidence 399999999999999 999999988543 2344554 77888877621 1 1 1 0
Q ss_pred HHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecch
Q 035495 95 IINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (427)
..++.....+ ...+..++++.+ ||++|+-. ++.+..+|..+|+|+|.+.=..
T Consensus 62 ~~Kl~~~~~R-~~~l~~~~~~~~------pDv~is~~-s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 62 YGKLLESIER-QYKLLKLIKKFK------PDVAISFG-SPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhC------CCEEEecC-cHHHHHHHHHhCCCeEEEecCc
Confidence 1223332222 333445555555 99999753 5778889999999999997653
No 54
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.45 E-value=1.3e-06 Score=68.94 Aligned_cols=122 Identities=20% Similarity=0.153 Sum_probs=81.4
Q ss_pred eEEEEecCCcccCCH--H-HHHHHHHHHHhCC-CcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccch
Q 035495 280 SVLHISFGSQNTISS--S-QMMELDIGLEASA-KSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQ 355 (427)
Q Consensus 280 ~vV~vs~Gs~~~~~~--~-~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq 355 (427)
..+||+-||..+.+- . .-++....+.+.+ .+.++..|.+. ...++....-.+.+.-.+...+|-|-
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~----------~~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ----------PFFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc----------cCCCCHHHhhcccCCeEEEEEecCcc
Confidence 369999999874221 1 1233556666666 46788888762 01222221111111334555677784
Q ss_pred -HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC----cccchhhHHHHHhhhceeEEEec
Q 035495 356 -LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI----AAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 356 -~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
.+-...++ ++|.|+|+||++|.|..|+|.|+++- -..|-..|..+++. |.=..=.+
T Consensus 74 l~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~p 134 (170)
T KOG3349|consen 74 LTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTP 134 (170)
T ss_pred HHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeec
Confidence 55566688 89999999999999999999999994 35799999999994 87665555
No 55
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.45 E-value=0.0002 Score=69.55 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=46.3
Q ss_pred CCcEEeccccchHh---hhcccCcceeec-cCCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLS-HCGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~-HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..+|.+.+++|+.+ ++..+++-++-+ +.|. .++.||+++|+|+|+.. .......+.+. ..|+.++.+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~~ 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDFF 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCCC
Confidence 46899999999765 567888422222 2232 48999999999999864 44566666663 677777653
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.44 E-value=9.3e-05 Score=69.83 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCcEEeccccc-hHhhhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAP-QLEILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vp-q~~ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..++.+.++.. -..++..++ ++|.... .+++.||+++|+|+|+.... .....+.+. +.|..++.+
T Consensus 245 ~~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~~ 314 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPPG 314 (359)
T ss_pred cceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECCC
Confidence 45777778754 356888888 4664432 57899999999999996543 345566664 788888764
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.43 E-value=1.8e-05 Score=74.55 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=49.0
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
..++.+.++.++ ..++..+++ +|.- |..+++.||+++|+|+|+... ...+..+.+. +.|+.++.++
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~~ 315 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPVGD 315 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECCCC
Confidence 557888888774 568888884 5532 335789999999999998543 3667778885 8899887744
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=0.00013 Score=70.00 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.++.++ ..++..+++ +|.- |...++.||+++|+|+|+.. ....+..+++. ..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~ 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC
Confidence 456888888774 567888884 5522 33469999999999999954 34556666663 67777765
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.40 E-value=0.00013 Score=71.46 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=45.9
Q ss_pred EEeccccch-HhhhcccCcceeec----cCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEE
Q 035495 347 LLVRNWAPQ-LEILSHKSTGAFLS----HCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 347 v~~~~~vpq-~~ll~~~~v~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l 412 (427)
+++.+...+ ..+++.+++ +|+. =+|..++.||+++|+|+|+-|..+++......+.+. |.++..
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~ 372 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV 372 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE
Confidence 444343332 567888885 3552 134446999999999999999988888888888775 877664
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.39 E-value=0.0002 Score=69.88 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=34.6
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
++.||.+++....|+-..+..+|++|++ +||+|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~-~G~~V~ii~~~~ 41 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAK-HGWKVDLVGYLE 41 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHh-cCceEEEEEecC
Confidence 3568888888888888899999999999 999999998643
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.36 E-value=0.00018 Score=68.40 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=68.1
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCcchhhhccCCchhHHHHh--ccCCCcEEeccccchH-
Q 035495 281 VLHISFGSQNTISSSQMMELDIGLEASA-KSFLWVITPPVGFDLRAEFRSEWLPEGFEERI--KEIKQGLLVRNWAPQL- 356 (427)
Q Consensus 281 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~~vpq~- 356 (427)
.+++..|+... ......+++++++.. .++++. +.+. ..+.+.+.. .....||.+.+|+|+.
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g~------------~~~~~~~~~~~~~~~~~V~~~g~v~~~~ 256 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEGP------------LEAELEALAAALGLLDRVRFLGRLDDEE 256 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCCh------------hHHHHHHHHHhcCCcceEEEcCCCCHHH
Confidence 45667777643 234556777777766 444443 3321 111222111 1125689999999975
Q ss_pred --hhhcccCcceeec---cCCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 357 --EILSHKSTGAFLS---HCGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 357 --~ll~~~~v~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
.+++.+++.++-+ +.|. .++.||+++|+|+|+....+.+...-. +. +.|..++.+
T Consensus 257 ~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~~ 317 (357)
T cd03795 257 KAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPPG 317 (357)
T ss_pred HHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCCC
Confidence 4777788533333 2343 479999999999999765544433322 24 777777653
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.34 E-value=0.00028 Score=66.92 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCcEEeccccchH---hhhcccCcceeec----cCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLS----HCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
..|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+. ......+.+. +.|..++.++
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~~~ 330 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPPGD 330 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECCCC
Confidence 5689999999865 56778884 442 2456789999999999998654 3455667774 7778777643
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.22 E-value=0.0006 Score=63.94 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=43.7
Q ss_pred CCcEEeccccc-hHhhhcccCcceeeccC----ChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhc-eeEEEecC
Q 035495 344 KQGLLVRNWAP-QLEILSHKSTGAFLSHC----GWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMG-VAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vp-q~~ll~~~~v~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~l~~~ 415 (427)
..++.+.++.. -..++..++ ++|.-. ..+++.||+++|+|+|+.+..+.+ ..+... | .|..++..
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~~ 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPNG 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCCC
Confidence 45677777743 356888888 455443 257899999999999987644332 334443 5 78877763
No 64
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.22 E-value=0.00022 Score=67.24 Aligned_cols=112 Identities=11% Similarity=0.055 Sum_probs=64.2
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhcc---CCCcEEeccccchH--
Q 035495 282 LHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKE---IKQGLLVRNWAPQL-- 356 (427)
Q Consensus 282 V~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~~~vpq~-- 356 (427)
+.+..|.... .+....+++++++.+.++++. |... ..+........ ...++.+.+++++.
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~-G~~~------------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~ 237 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLA-GPVS------------DPDYFYREIAPELLDGPDIEYLGEVGGAEK 237 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEE-eCCC------------CHHHHHHHHHHhcccCCcEEEeCCCCHHHH
Confidence 3344566632 334456777888888776654 4331 11111111000 14689999999975
Q ss_pred -hhhcccCcceeec--cCCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 357 -EILSHKSTGAFLS--HCGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 357 -~ll~~~~v~~~I~--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
.+++.+++-++-+ +-|. .++.||+++|+|+|+.... .....+.+. ..|..++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~ 293 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD 293 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC
Confidence 4678888533323 2343 5899999999999987642 333444441 3565554
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.12 E-value=0.00055 Score=66.51 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=34.9
Q ss_pred CCcEEeccccchHh---hhcccCcceeec---cCCh-hhHHHHHhcCCcEEeccCc
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLS---HCGW-NSVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~---HgG~-~s~~eal~~GvP~v~~P~~ 392 (427)
..++.+.+|+|+.+ +++.++ ++|. +-|. .++.||+++|+|+|+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 45688889998644 677888 4543 2244 4999999999999997754
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.11 E-value=0.0018 Score=61.46 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=43.3
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc--CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH--CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~ 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC
Confidence 56899999999644 5788885222222 224789999999999999653 333444443 66666655
No 67
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.10 E-value=0.00093 Score=65.24 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCcEEeccccchHh---hhcccCcceeeccCCh------hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSHCGW------NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~HgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
-.|+.+.+|+|+.+ +++.+++.++.+.-+. +.+.|++++|+|+|+....+.. .+..+. +.|+.++.
T Consensus 283 l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~ 357 (412)
T PRK10307 283 LPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP 357 (412)
T ss_pred CCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC
Confidence 34799999998654 6888896544444332 2468999999999998654311 112222 45666665
No 68
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.08 E-value=0.00067 Score=66.21 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=32.8
Q ss_pred eccccchHhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccC
Q 035495 349 VRNWAPQLEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 349 ~~~~vpq~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~ 391 (427)
+.++.+..+++...+ +||.- +=.+++.||+++|+|+|+.-.
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~ 332 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANH 332 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecC
Confidence 556777777998888 68876 335799999999999999754
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.06 E-value=0.0029 Score=61.52 Aligned_cols=64 Identities=6% Similarity=-0.002 Sum_probs=45.9
Q ss_pred CCcEEeccccchH---hhhcccCcceeec---cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLS---HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.+++++. .+++.++ ++|. +.| ..++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~ 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC
Confidence 4579999999864 5788899 4553 233 3589999999999998654 3445556663 67777765
No 70
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.05 E-value=0.002 Score=62.34 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=44.9
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..+|.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-. ......+.+. +.|..++.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC
Confidence 4689999999975 46788884 5532 22 3578999999999999643 3344556663 67777654
No 71
>PLN02275 transferase, transferring glycosyl groups
Probab=98.03 E-value=0.013 Score=56.36 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=43.4
Q ss_pred CcEEecc-ccchHhh---hcccCcceeec-c-----CC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 345 QGLLVRN-WAPQLEI---LSHKSTGAFLS-H-----CG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 345 ~~v~~~~-~vpq~~l---l~~~~v~~~I~-H-----gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
.|+.+.. |+|+.++ ++.+++ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566544 7887655 888995 552 1 12 3579999999999999653 3466677774 7898875
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.01 E-value=0.0021 Score=61.06 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCcEEecc-ccch---HhhhcccCcceeec--c----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 344 KQGLLVRN-WAPQ---LEILSHKSTGAFLS--H----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 344 ~~~v~~~~-~vpq---~~ll~~~~v~~~I~--H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
..++.+.+ |+|+ ..+++.+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 55777765 4886 457778884 542 2 33568999999999999977543 3445554 7777776
Q ss_pred c
Q 035495 414 R 414 (427)
Q Consensus 414 ~ 414 (427)
.
T Consensus 318 ~ 318 (366)
T cd03822 318 P 318 (366)
T ss_pred C
Confidence 5
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.99 E-value=0.00089 Score=64.08 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=71.2
Q ss_pred CCeEEEEecCCcccC-CHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCcchhhhccCCchhHHHHhccC---CCcEEeccc
Q 035495 278 PASVLHISFGSQNTI-SSSQMMELDIGLEASAK-SFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEI---KQGLLVRNW 352 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~~~ 352 (427)
+++.|++++|..... ..+.+..+++++++... ++.+...... ...+.+.+..... ..++.+.+.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-----------~~~~~l~~~~~~~~~~~~~v~~~~~ 265 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-----------RTRPRIREAGLEFLGHHPNVLLISP 265 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-----------ChHHHHHHHHHhhccCCCCEEEECC
Confidence 355778888876543 35567778888877533 2444333221 0111222211100 357777666
Q ss_pred cchH---hhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 353 APQL---EILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 353 vpq~---~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
.++. .++..++ +||+..| |.+.||++.|+|+|+++.. |. +..+.+. |+++.+.
T Consensus 266 ~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~ 321 (363)
T cd03786 266 LGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG 321 (363)
T ss_pred cCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC
Confidence 5543 5677788 8999998 7778999999999998743 22 4455664 8877665
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.98 E-value=0.0015 Score=62.05 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCcEEeccccchH---hhhcccCcceeec----------cCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeE
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLS----------HCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAV 410 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~----------HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 410 (427)
+.|+.+.+++|+. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 5789999999854 46677885 444 23357999999999999987642 233455552 4787
Q ss_pred EEec
Q 035495 411 EMTR 414 (427)
Q Consensus 411 ~l~~ 414 (427)
.++.
T Consensus 308 ~~~~ 311 (355)
T cd03799 308 LVPP 311 (355)
T ss_pred EeCC
Confidence 7765
No 75
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=0.016 Score=54.78 Aligned_cols=305 Identities=14% Similarity=0.145 Sum_probs=166.1
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcC--CCEEEEEe-CCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRST--GFKITIAN-TPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNT 84 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 84 (427)
.+.+-.-+.|-++-.++|.++|++ + ++.|++-+ ++.-.+.+.+.-. +.+....+|++ +
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~---------~~v~h~YlP~D-----~---- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG---------DSVIHQYLPLD-----L---- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC---------CCeEEEecCcC-----c----
Confidence 566667789999999999999999 7 88888888 5555666665432 44566666653 0
Q ss_pred CCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEE-ecC-CcchHHHHHHHhCCceEEEecchHHHHHHHH
Q 035495 85 ENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICII-TDT-FFGWAVDVAKSAGSTNVTFATGGAYVTLAYT 162 (427)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI-~D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (427)
...+...++.++ ||++| ++. +.+....-+++.|+|.+.++-=
T Consensus 112 ---------------------~~~v~rFl~~~~------P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR--------- 155 (419)
T COG1519 112 ---------------------PIAVRRFLRKWR------PKLLIIMETELWPNLINELKRRGIPLVLVNAR--------- 155 (419)
T ss_pred ---------------------hHHHHHHHHhcC------CCEEEEEeccccHHHHHHHHHcCCCEEEEeee---------
Confidence 112355666666 88665 443 3445668888999999997521
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCcccchhccchhhhhcCCCCchhhhhhhhhhcccccceEEEcCccccChhHHHHHHh
Q 035495 163 SMWLNLPQKKTNSDEFTLPGFPERCHFHITQLHKYLRMAGGSDDWSKFMQPNITQSFESYGMLCNTAEDIEPGALQWLRN 242 (427)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 242 (427)
+..+....+.+.. .+.... ....++++..+-. +.. ....
T Consensus 156 --------------------------LS~rS~~~y~k~~-------~~~~~~---~~~i~li~aQse~--D~~---Rf~~ 194 (419)
T COG1519 156 --------------------------LSDRSFARYAKLK-------FLARLL---FKNIDLILAQSEE--DAQ---RFRS 194 (419)
T ss_pred --------------------------echhhhHHHHHHH-------HHHHHH---HHhcceeeecCHH--HHH---HHHh
Confidence 1111111111110 111111 2223444544432 222 2222
Q ss_pred cCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCC-CeEEEEecCCcccCCHHHHHHHHHHHHh--CCCcEEEEEcCCC
Q 035495 243 YIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDP-ASVLHISFGSQNTISSSQMMELDIGLEA--SAKSFLWVITPPV 319 (427)
Q Consensus 243 ~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~-~~vV~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~~~ 319 (427)
--.+++.-+|.+=.+.. +.+.+......|-..-+. ++ +.|..+|. ....+..-....++.+ .+...||+=+...
T Consensus 195 LGa~~v~v~GNlKfd~~-~~~~~~~~~~~~r~~l~~~r~-v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHpE 271 (419)
T COG1519 195 LGAKPVVVTGNLKFDIE-PPPQLAAELAALRRQLGGHRP-VWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHPE 271 (419)
T ss_pred cCCcceEEecceeecCC-CChhhHHHHHHHHHhcCCCCc-eEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCChh
Confidence 22245777777765541 112223333333222112 33 45555552 2233444445555554 2344555543332
Q ss_pred CCCcchhhhc-cCCchhHHHHh--ccCCCcEEeccccc-hHhhhcccCcceee-----ccCChhhHHHHHhcCCcEEecc
Q 035495 320 GFDLRAEFRS-EWLPEGFEERI--KEIKQGLLVRNWAP-QLEILSHKSTGAFL-----SHCGWNSVLESLSQGLPTIGWP 390 (427)
Q Consensus 320 ~~~~~~~~~~-~~l~~~~~~~~--~~~~~~v~~~~~vp-q~~ll~~~~v~~~I-----~HgG~~s~~eal~~GvP~v~~P 390 (427)
+++...+... .-+.-....+. .....+|++.|-+- ...+++-+++ +|| -+||+| ..|++++|+|+|.=|
T Consensus 272 Rf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp 349 (419)
T COG1519 272 RFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGP 349 (419)
T ss_pred hHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCC
Confidence 2111100000 00000000000 00022555556554 3455566665 554 589998 579999999999999
Q ss_pred CcccchhhHHHHHhhhceeEEEec
Q 035495 391 IAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
+...|.+.++++.++ |.|+.++.
T Consensus 350 ~~~Nf~ei~~~l~~~-ga~~~v~~ 372 (419)
T COG1519 350 YTFNFSDIAERLLQA-GAGLQVED 372 (419)
T ss_pred ccccHHHHHHHHHhc-CCeEEECC
Confidence 999999999999998 99999987
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.89 E-value=0.0022 Score=61.07 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=43.9
Q ss_pred CCcEEeccccc-hH---hhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAP-QL---EILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vp-q~---~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++...+|++ +. .+++.++ ++|.- |..+++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 55788889998 43 4688888 56664 335799999999999998653 2333444442 56666654
No 77
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.88 E-value=0.0043 Score=59.09 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=34.6
Q ss_pred CCcEEeccccchHh---hhcccCcceeeccC----Ch-hhHHHHHhcCCcEEeccCc
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSHC----GW-NSVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~Hg----G~-~s~~eal~~GvP~v~~P~~ 392 (427)
..+|.+.+++++.+ ++..+++ ++.+. |. +++.||+++|+|+|+....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 57899999999864 5656674 44332 32 5799999999999987543
No 78
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.88 E-value=0.015 Score=55.18 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=46.1
Q ss_pred CCcEEeccccc-hHhhhcccCcceeec--cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAP-QLEILSHKSTGAFLS--HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vp-q~~ll~~~~v~~~I~--HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..+|.+.+|.+ ...++..+++-++-+ +-| .+++.||+++|+|+|+.-. ......+.+. +.|..++.+
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~ 315 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPPG 315 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCCC
Confidence 45788888854 356888899533323 123 3699999999999998643 3455666663 678888764
No 79
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.84 E-value=0.0097 Score=56.82 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc----------CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeE
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH----------CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAV 410 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 410 (427)
..++.+.+++|+.+ +++.++ ++|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 56788999998654 578888 45532 2357999999999999987653 366667774 8888
Q ss_pred EEec
Q 035495 411 EMTR 414 (427)
Q Consensus 411 ~l~~ 414 (427)
.++.
T Consensus 317 ~~~~ 320 (367)
T cd05844 317 LVPE 320 (367)
T ss_pred EECC
Confidence 8875
No 80
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.83 E-value=0.01 Score=56.91 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=66.5
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEecccc
Q 035495 279 ASVLHISFGSQNTISSSQMMELDIGLEAS-----AKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWA 353 (427)
Q Consensus 279 ~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~v 353 (427)
+.+|+++.+-.... .+.+..+++|+.+. +.++++....+. + ..+.+.+... ...++.+.+.+
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------~-----~~~~~~~~~~-~~~~v~~~~~~ 263 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------V-----VREPLHKHLG-DSKRVHLIEPL 263 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh------H-----HHHHHHHHhC-CCCCEEEECCC
Confidence 34666665433221 13466677777653 456666544331 0 1111111111 14578877766
Q ss_pred ch---HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 354 PQ---LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 354 pq---~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
++ ..+++.++ ++|+..|. .+.||+++|+|+|.++..++++. +... |.++.+.
T Consensus 264 ~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~ 318 (365)
T TIGR00236 264 EYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG 318 (365)
T ss_pred ChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC
Confidence 64 45677888 78887764 47999999999999976555552 3344 7776664
No 81
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.77 E-value=0.012 Score=56.33 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.4
Q ss_pred CeEEEEecCCcc--c-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc-
Q 035495 279 ASVLHISFGSQN--T-ISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP- 354 (427)
Q Consensus 279 ~~vV~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp- 354 (427)
++.|+|++=-.. . ...+.+..+++++.+.+.++++...... .....+-+.+...... .+|+.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-------p~~~~i~~~i~~~~~~-~~~v~l~~~l~~ 272 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-------AGSRIINEAIEEYVNE-HPNFRLFKSLGQ 272 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-------CCchHHHHHHHHHhcC-CCCEEEECCCCh
Confidence 467888775432 3 3467899999999887766655543220 0000011111111110 34677776544
Q ss_pred --hHhhhcccCcceeeccCChhhHHHHHhcCCcEEecc
Q 035495 355 --QLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWP 390 (427)
Q Consensus 355 --q~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P 390 (427)
...++++++ ++|+.++.+- .||.+.|+|+|.+-
T Consensus 273 ~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 273 ERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG 307 (365)
T ss_pred HHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec
Confidence 567888999 8998875544 99999999999774
No 82
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.77 E-value=0.00028 Score=66.34 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=78.9
Q ss_pred CCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCc-EEEEEcCCCCCCc
Q 035495 245 KLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKS-FLWVITPPVGFDL 323 (427)
Q Consensus 245 ~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~ 323 (427)
+.+..|||-.+.+.. .. .+.. ++ +.++|.+--||-...-...+-.++++.+++..+ .++.+....
T Consensus 143 g~~~~~VGhPl~d~~--~~-~~~~----~~---~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~---- 208 (347)
T PRK14089 143 QSKATYVGHPLLDEI--KE-FKKD----LD---KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF---- 208 (347)
T ss_pred CCCCEEECCcHHHhh--hh-hhhh----cC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC----
Confidence 456779996665531 10 0111 21 236788888887543334444444555543222 222222221
Q ss_pred chhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC--cccchhhHHH
Q 035495 324 RAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI--AAEQTYNSKM 401 (427)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~--~~DQ~~na~~ 401 (427)
+ . +.+.+.... ...+.+.+ .-.+++..++ ++|+-.|..|+ |+...|+|+|+ ++ ..=|..||++
T Consensus 209 --~-----~-~~i~~~~~~-~~~~~~~~--~~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~ 273 (347)
T PRK14089 209 --K-----G-KDLKEIYGD-ISEFEISY--DTHKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKM 273 (347)
T ss_pred --c-----H-HHHHHHHhc-CCCcEEec--cHHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHH
Confidence 0 1 222221110 11222222 3356889999 89999999999 99999999999 54 3468999999
Q ss_pred HH---hhhceeEEE
Q 035495 402 LV---EEMGVAVEM 412 (427)
Q Consensus 402 v~---~~lG~G~~l 412 (427)
+. . .|+.-.+
T Consensus 274 lv~~~~-igL~Nii 286 (347)
T PRK14089 274 FVKLKH-IGLANIF 286 (347)
T ss_pred HHcCCe-eehHHHh
Confidence 99 6 3776666
No 83
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00036 Score=54.33 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=73.7
Q ss_pred EEEecCCcccCCHHHHHH--HHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccc--cc-hH
Q 035495 282 LHISFGSQNTISSSQMME--LDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNW--AP-QL 356 (427)
Q Consensus 282 V~vs~Gs~~~~~~~~~~~--~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~--vp-q~ 356 (427)
++|+-||....=...+.. +.+-.+.-..++|+.+|.+. ..| -.+..+.+| -+ -+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-----------~kp----------vagl~v~~F~~~~kiQ 60 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD-----------IKP----------VAGLRVYGFDKEEKIQ 60 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC-----------ccc----------ccccEEEeechHHHHH
Confidence 788999884311122211 33333334568899999762 111 012233344 44 34
Q ss_pred hhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcc--------cchhhHHHHHhhhceeEEEecCC
Q 035495 357 EILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAA--------EQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 357 ~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
.+..-++ ++|+|+|.||+..++..++|.|++|-.. .|-..|..+++ ++.=+...+.+
T Consensus 61 sli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte 125 (161)
T COG5017 61 SLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTE 125 (161)
T ss_pred HHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCc
Confidence 5555566 8999999999999999999999999643 58889999999 68877777643
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.66 E-value=0.0036 Score=59.45 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeE
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAV 410 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 410 (427)
..++.+.++..+ ..++..+++ +|.- |..+++.||+++|+|+|+. |...+...+++. |..+
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~ 308 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIV 308 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEe
Confidence 457888888754 568888885 4443 2257899999999999974 444555555552 5443
No 85
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.64 E-value=0.01 Score=58.43 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=44.7
Q ss_pred CCcEEeccccchHhh---hccc----CcceeeccC---C-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEE
Q 035495 344 KQGLLVRNWAPQLEI---LSHK----STGAFLSHC---G-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 344 ~~~v~~~~~vpq~~l---l~~~----~v~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l 412 (427)
..+|.+.+++++.++ ++.+ + +||... | ..++.||+++|+|+|+.-. ..+...+.+. ..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~D--v~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRG--IFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCC--EEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEe
Confidence 456888888887664 5544 5 677643 3 4699999999999998764 3455555553 567777
Q ss_pred ecC
Q 035495 413 TRG 415 (427)
Q Consensus 413 ~~~ 415 (427)
+.+
T Consensus 389 ~~~ 391 (439)
T TIGR02472 389 DVL 391 (439)
T ss_pred CCC
Confidence 663
No 86
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.62 E-value=0.0062 Score=60.70 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=78.7
Q ss_pred ccChhHHHHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHH--hC-
Q 035495 231 DIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLE--AS- 307 (427)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~--~~- 307 (427)
.+|.++++. .+-+..|||--+.+.. +.....++..+-+.-.+++++|-+--||-...=...+-.++++.+ ..
T Consensus 370 PFE~~~y~~----~gv~v~yVGHPL~d~i-~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~ 444 (608)
T PRK01021 370 PFEQNLFKD----SPLRTVYLGHPLVETI-SSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA 444 (608)
T ss_pred ccCHHHHHh----cCCCeEEECCcHHhhc-ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 366665542 3678999996665531 112223333333333445678888888764433334445666665 32
Q ss_pred -CCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCC-CcEEec-cccchHhhhcccCcceeeccCChhhHHHHHhcCC
Q 035495 308 -AKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIK-QGLLVR-NWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 308 -~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~-~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
+.++++...... ..+.+.+...+.+ ..+.+. +- ...++++.|+ +.+.-+|- .+.|+...|+
T Consensus 445 ~~l~fvvp~a~~~------------~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD--~aLaaSGT-aTLEaAL~g~ 508 (608)
T PRK01021 445 STHQLLVSSANPK------------YDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECD--CALAKCGT-IVLETALNQT 508 (608)
T ss_pred cCeEEEEecCchh------------hHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcC--eeeecCCH-HHHHHHHhCC
Confidence 455655433221 0111122111001 011111 11 1257899999 67777775 4679999999
Q ss_pred cEEecc-CcccchhhHHHHHh
Q 035495 385 PTIGWP-IAAEQTYNSKMLVE 404 (427)
Q Consensus 385 P~v~~P-~~~DQ~~na~~v~~ 404 (427)
|||++= ...=-...|+++.+
T Consensus 509 PmVV~YK~s~Lty~Iak~Lvk 529 (608)
T PRK01021 509 PTIVTCQLRPFDTFLAKYIFK 529 (608)
T ss_pred CEEEEEecCHHHHHHHHHHHh
Confidence 999843 22222344555544
No 87
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.61 E-value=0.035 Score=53.47 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=43.2
Q ss_pred cEE-eccccchH---hhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 346 GLL-VRNWAPQL---EILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 346 ~v~-~~~~vpq~---~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
++. +.+++++. .++..++ ++|.- |...++.||+++|+|+|+... ......+++. +.|..++.+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~ 331 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPD 331 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCC
Confidence 344 34677754 4678888 45542 224578999999999998653 4566667774 778888763
No 88
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.60 E-value=0.0097 Score=56.53 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCc
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~ 392 (427)
..++.+.++..+ ..++..+++ +|+- |-.+++.||+++|+|+|+....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~ 299 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI 299 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC
Confidence 567888887544 668888884 4432 4468999999999999986543
No 89
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.58 E-value=0.027 Score=53.11 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCcEEeccccc-hHhhhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCcccchhhHHHHHh
Q 035495 344 KQGLLVRNWAP-QLEILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVE 404 (427)
Q Consensus 344 ~~~v~~~~~vp-q~~ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 404 (427)
..++.+.+... -..+++.++ ++|.... .+++.||+++|+|+|+.. ...+...+.+
T Consensus 250 ~~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~ 309 (365)
T cd03807 250 EDKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD 309 (365)
T ss_pred CceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc
Confidence 45676666554 356888898 5665433 479999999999999854 3444445544
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.56 E-value=0.0063 Score=57.76 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=79.0
Q ss_pred ccChhHHHHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHh----
Q 035495 231 DIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEA---- 306 (427)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~---- 306 (427)
.+|.++++. .+.+..|||--+.+.. .....+....+.+ -.+++++|.+--||-...=...+-.++++.+.
T Consensus 142 PFE~~~y~~----~g~~~~~VGHPl~d~~-~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~ 215 (373)
T PF02684_consen 142 PFEPEFYKK----HGVPVTYVGHPLLDEV-KPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQ 215 (373)
T ss_pred cccHHHHhc----cCCCeEEECCcchhhh-ccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 356664443 3468999996665541 1122233333333 23457789888888643222223334444333
Q ss_pred -CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEec-cccchHhhhcccCcceeeccCChhhHHHHHhcCC
Q 035495 307 -SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVR-NWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGL 384 (427)
Q Consensus 307 -~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~Gv 384 (427)
.+.++++...... ..+.+.........++.+. ..-.-.+++..++ +.+.-.|- .+.|+...|+
T Consensus 216 ~p~l~fvvp~a~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad--~al~~SGT-aTLE~Al~g~ 280 (373)
T PF02684_consen 216 RPDLQFVVPVAPEV------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAAD--AALAASGT-ATLEAALLGV 280 (373)
T ss_pred CCCeEEEEecCCHH------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCc--chhhcCCH-HHHHHHHhCC
Confidence 4566666654431 1111111111002222221 2223566788888 55555553 5789999999
Q ss_pred cEEeccC-cccchhhHHHHHh
Q 035495 385 PTIGWPI-AAEQTYNSKMLVE 404 (427)
Q Consensus 385 P~v~~P~-~~DQ~~na~~v~~ 404 (427)
|||++=- ..=....|+++.+
T Consensus 281 P~Vv~Yk~~~lt~~iak~lvk 301 (373)
T PF02684_consen 281 PMVVAYKVSPLTYFIAKRLVK 301 (373)
T ss_pred CEEEEEcCcHHHHHHHHHhhc
Confidence 9998642 2334556666655
No 91
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.51 E-value=0.0066 Score=58.05 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=64.9
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcE-EEEEcCCCCCCcchhhhccCCchhHHHHhc--cCCCcEEeccccch--
Q 035495 281 VLHISFGSQNTISSSQMMELDIGLEASAKSF-LWVITPPVGFDLRAEFRSEWLPEGFEERIK--EIKQGLLVRNWAPQ-- 355 (427)
Q Consensus 281 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~~vpq-- 355 (427)
.+++..|.+.......+..+++++......+ ++.+|.+. ..+.+.+... ..+.+|.+.+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~------------~~~~l~~~~~~~~l~~~v~f~G~~~~~~ 248 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS------------DFEKCKAYSRELGIEQRIIWHGWQSQPW 248 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc------------cHHHHHHHHHHcCCCCeEEEecccCCcH
Confidence 4556667664323344566777776643232 33444431 1122222111 12568999999753
Q ss_pred Hh---hhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 356 LE---ILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 356 ~~---ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
.. .++.++ ++|.. |-..++.||+++|+|+|+.-. .......+++. ..|..++.+
T Consensus 249 ~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~~ 309 (359)
T PRK09922 249 EVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTPG 309 (359)
T ss_pred HHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECCC
Confidence 33 344567 45532 335799999999999998751 22233455553 568777663
No 92
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.45 E-value=0.021 Score=60.72 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCcEEeccccchHh---hhcccC--cceeecc---CCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQLE---ILSHKS--TGAFLSH---CGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~--v~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..+|.+.+++++.+ ++..++ ..+||.- =|+ .++.||+++|+|+|+.... .....+... .-|+.+++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhccC-CcEEEECC
Confidence 45688888988765 344441 1256654 343 6899999999999997643 233444442 56777765
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.44 E-value=0.11 Score=53.68 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=47.0
Q ss_pred CCcEEeccccch-HhhhcccCcceeec---cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLS---HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
.++|.+.+|.++ ..++..+++ ||. +.| .+++.||+++|+|+|+.... .....+.+. .-|+.++.
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~ 641 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA 641 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC
Confidence 567888899875 557888884 543 455 47999999999999997642 355556663 56888875
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.40 E-value=0.0072 Score=57.31 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc----CChhhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~ 391 (427)
..++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+...
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 7789999999875 46778885 3322 335689999999999999654
No 95
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.32 E-value=0.0067 Score=58.88 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCcEEeccccch-HhhhcccCcceee--cc--CCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFL--SH--CGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I--~H--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
..+|.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.- .+.. |.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~ 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC
Confidence 568889899985 557888895 44 32 454 46999999999999988543211 1233 6676664
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.29 E-value=0.00089 Score=63.41 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCCeEEEEecCCcccCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEecc
Q 035495 277 DPASVLHISFGSQNTIS-S---SQMMELDIGLEAS-AKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRN 351 (427)
Q Consensus 277 ~~~~vV~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~ 351 (427)
.+++.+++++=...... + +.+.++++++.+. +.++||....++ . ....+.+..... +|+.+..
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p-------~----~~~~i~~~l~~~-~~v~~~~ 245 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP-------R----GSDIIIEKLKKY-DNVRLIE 245 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-------H----HHHHHHHHHTT--TTEEEE-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-------h----HHHHHHHHhccc-CCEEEEC
Confidence 46788999986555544 3 3455566666665 788999987541 1 111222333322 4777776
Q ss_pred ccc---hHhhhcccCcceeeccCChhhHH-HHHhcCCcEEec
Q 035495 352 WAP---QLEILSHKSTGAFLSHCGWNSVL-ESLSQGLPTIGW 389 (427)
Q Consensus 352 ~vp---q~~ll~~~~v~~~I~HgG~~s~~-eal~~GvP~v~~ 389 (427)
-++ ...+|++++ ++|+..| ++. ||.+.|+|+|.+
T Consensus 246 ~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 246 PLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp ---HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEEC
T ss_pred CCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe
Confidence 665 567888999 8999999 666 999999999999
No 97
>PLN02949 transferase, transferring glycosyl groups
Probab=97.29 E-value=0.22 Score=49.22 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCcEEeccccchHh---hhcccCcceeec---cCChh-hHHHHHhcCCcEEeccCc
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLS---HCGWN-SVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~---HgG~~-s~~eal~~GvP~v~~P~~ 392 (427)
..+|.+.+++|+.+ +|..++ ++|+ +-|+| ++.||+++|+|+|+....
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g 387 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSA 387 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCC
Confidence 56788989998654 677788 5552 23443 799999999999997643
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.26 E-value=0.33 Score=50.63 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=41.4
Q ss_pred CCcEEecccc-ch---Hhhhcc----cCcceeec---cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEE
Q 035495 344 KQGLLVRNWA-PQ---LEILSH----KSTGAFLS---HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVE 411 (427)
Q Consensus 344 ~~~v~~~~~v-pq---~~ll~~----~~v~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~ 411 (427)
..+|...++. +. ..++.+ ++ +||. .=| ..++.||+++|+|+|+.- ....+..+++- .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~ad--VfV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKG--IFVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCc--EEEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEE
Confidence 3567776764 32 234432 23 5664 233 359999999999999854 34566667763 67888
Q ss_pred EecC
Q 035495 412 MTRG 415 (427)
Q Consensus 412 l~~~ 415 (427)
+++.
T Consensus 691 Vdp~ 694 (784)
T TIGR02470 691 IDPY 694 (784)
T ss_pred eCCC
Confidence 8764
No 99
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.25 E-value=0.11 Score=49.84 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCcEEeccccc-hHhhhcccCcceee--cc--CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAP-QLEILSHKSTGAFL--SH--CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vp-q~~ll~~~~v~~~I--~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.++.. -..+++.+++ +| ++ |-.+++.||+++|+|+|+... ..+...+++. ..|..++.
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~ 322 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP 322 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC
Confidence 34566666544 3568888994 55 22 345799999999999999664 3355555553 56777765
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.22 E-value=0.043 Score=52.15 Aligned_cols=110 Identities=7% Similarity=0.075 Sum_probs=68.9
Q ss_pred EEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchH---hhh
Q 035495 283 HISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQL---EIL 359 (427)
Q Consensus 283 ~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~---~ll 359 (427)
++..|++.. ......+++++++.+.++++. |.+. ..+.+.. .. ..||.+.+++|+. .++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~------------~~~~l~~-~~--~~~V~~~g~~~~~~~~~~~ 259 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGP------------ELDRLRA-KA--GPNVTFLGRVSDEELRDLY 259 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECCh------------hHHHHHh-hc--CCCEEEecCCCHHHHHHHH
Confidence 445566643 344666788888877776554 4331 1112222 22 6789999999974 468
Q ss_pred cccCcceeeccCCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 360 SHKSTGAFLSHCGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 360 ~~~~v~~~I~HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
+.+++-++-+.-|. .++.||+++|+|+|+....+ ....+.+. +.|+.++.+
T Consensus 260 ~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~ 311 (351)
T cd03804 260 ARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ 311 (351)
T ss_pred HhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC
Confidence 88885333233444 46789999999999976433 34446664 678887763
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.16 E-value=0.15 Score=49.83 Aligned_cols=46 Identities=24% Similarity=0.088 Sum_probs=33.9
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~P~ 391 (427)
..+|.+.+++|+. .+|..++ ++|+- =| .-++.||+++|+|+|+.-.
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ 356 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHAS 356 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcC
Confidence 4689999999865 4677888 44432 12 2488999999999998654
No 102
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.15 E-value=0.066 Score=52.12 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=46.4
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc---------CCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeE
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH---------CGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAV 410 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H---------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 410 (427)
..++.+.+|+|+.+ ++..+++ ||.- -|. ++++||+++|+|+|+... ......+++. ..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 56799999999754 6778884 5532 244 678999999999999754 3345556663 5787
Q ss_pred EEecC
Q 035495 411 EMTRG 415 (427)
Q Consensus 411 ~l~~~ 415 (427)
.++.+
T Consensus 351 lv~~~ 355 (406)
T PRK15427 351 LVPEN 355 (406)
T ss_pred EeCCC
Confidence 77663
No 103
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.00 E-value=0.5 Score=48.31 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=34.1
Q ss_pred cEEeccccchH-hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEeccCcc
Q 035495 346 GLLVRNWAPQL-EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGWPIAA 393 (427)
Q Consensus 346 ~v~~~~~vpq~-~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~ 393 (427)
++.+.++.++. ++++.++ +||.- =| .+++.||+++|+|+|+.-..+
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCC
Confidence 46666777754 5888888 56653 23 478999999999999976544
No 104
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.86 E-value=0.16 Score=44.18 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCcEEeccccch----HhhhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCccc
Q 035495 344 KQGLLVRNWAPQ----LEILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAE 394 (427)
Q Consensus 344 ~~~v~~~~~vpq----~~ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~D 394 (427)
..|+.+.+++++ ..++..++ ++|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 568888888632 22444477 5777665 6899999999999999886543
No 105
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.79 E-value=0.0079 Score=58.41 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchH
Q 035495 277 DPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQL 356 (427)
Q Consensus 277 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~ 356 (427)
++..++|.||......+++.++.-.+-+++.+...+|...... . . ...+- ....+...++..+++.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~----~-~--~~~l~-~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA----S-G--EARLR-RRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST----T-H--HHHHH-HHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH----H-H--HHHHH-HHHHHcCCChhhEEEcCCCCHH
Confidence 3456999999999999999999999999998888899876542 0 0 00111 1112223336678887887755
Q ss_pred hh---hcccCcceee---ccCChhhHHHHHhcCCcEEeccCcc-cchhhHHHHHhhhceeEEEec
Q 035495 357 EI---LSHKSTGAFL---SHCGWNSVLESLSQGLPTIGWPIAA-EQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 357 ~l---l~~~~v~~~I---~HgG~~s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~lG~G~~l~~ 414 (427)
+- +..++| ++ ..+|..|++|||..|||+|.+|--. =...-|..+.. +|+.-.+-.
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~ 415 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD 415 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC
Confidence 43 344663 43 4578899999999999999999432 22334445555 577665554
No 106
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.65 E-value=0.4 Score=46.04 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCcEEeccccchHh---hhcccCcceee------ccCCh-hhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFL------SHCGW-NSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I------~HgG~-~s~~eal~~GvP~v~~P~ 391 (427)
..||...+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~ 310 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL 310 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc
Confidence 46899999998655 57788863332 22333 458999999999998763
No 107
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.51 E-value=0.69 Score=44.31 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCcEEecccc--ch---HhhhcccCcceeeccC---C-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWA--PQ---LEILSHKSTGAFLSHC---G-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~v--pq---~~ll~~~~v~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.++. ++ ..+++.++ +|+.-. | ..++.||+++|+|+|+.... .....+.+. ..|+.++.
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~~ 323 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVDT 323 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeCC
Confidence 4567776776 43 24677888 566433 2 35999999999999987543 334445553 56665543
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.47 E-value=0.75 Score=45.78 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=28.8
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CCh-hhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CGW-NSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG~-~s~~eal~~GvP~v~~P~ 391 (427)
+.++.+..-.++. .+++.++ +++.- -|. .+.+||+++|+|+|+...
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~ 402 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRAT 402 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcC
Confidence 3466543333332 4677888 45532 122 478999999999998654
No 109
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.63 Score=43.79 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=70.9
Q ss_pred ccChhHHHHHHhcCCCCEEEeCccCCCCCCCCCCCchhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHh----
Q 035495 231 DIEPGALQWLRNYIKLPVWAIGPLLPQSYLKKSKNPEKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEA---- 306 (427)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~---- 306 (427)
.+|+++++.. +-+..|||--+.+.. +..+..+.+.+-+.-..+++++.+--||-.+.=...+..+.++.++
T Consensus 145 PFE~~~y~k~----g~~~~yVGHpl~d~i-~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~ 219 (381)
T COG0763 145 PFEPAFYDKF----GLPCTYVGHPLADEI-PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKAR 219 (381)
T ss_pred CCCHHHHHhc----CCCeEEeCChhhhhc-cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 3677655542 334889996655541 1222334444444444457789998898754222233334444443
Q ss_pred -CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCC---CcEEeccccchHhhhcccCcceeeccCChhhHHHHHhc
Q 035495 307 -SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIK---QGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQ 382 (427)
Q Consensus 307 -~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~ 382 (427)
.+.+|+.-+.... -+.......+.. .+.++.+-- -.+++..|+ +.+.-+|-. +.|+..+
T Consensus 220 ~~~~~~vlp~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD--~al~aSGT~-tLE~aL~ 282 (381)
T COG0763 220 YPDLKFVLPLVNAK-------------YRRIIEEALKWEVAGLSLILIDGE-KRKAFAAAD--AALAASGTA-TLEAALA 282 (381)
T ss_pred CCCceEEEecCcHH-------------HHHHHHHHhhccccCceEEecCch-HHHHHHHhh--HHHHhccHH-HHHHHHh
Confidence 4577777766541 011111111000 112221111 133567777 555566643 5799999
Q ss_pred CCcEEec
Q 035495 383 GLPTIGW 389 (427)
Q Consensus 383 GvP~v~~ 389 (427)
|+|||+.
T Consensus 283 g~P~Vv~ 289 (381)
T COG0763 283 GTPMVVA 289 (381)
T ss_pred CCCEEEE
Confidence 9999984
No 110
>PRK00654 glgA glycogen synthase; Provisional
Probab=96.38 E-value=1.2 Score=44.22 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=27.6
Q ss_pred cEEEEeCCC---C--c-cCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLM---A--H-GHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p---~--~-GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|||++++.- . . |--.-.-.|+++|++ +||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~-~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAA-LGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHH-CCCcEEEEecC
Confidence 478888733 2 3 333445789999999 99999999964
No 111
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.22 E-value=0.46 Score=45.25 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|.+.++|||++-....|++.=..++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 77788999999999999999999999999994 4899999999888877665
No 112
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.13 E-value=0.012 Score=44.14 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=44.9
Q ss_pred chhhhhhccCCCCCeEEEEecCCcccC---CH--HHHHHHHHHHHhCCCcEEEEEcCCC
Q 035495 266 PEKIIEWLDLHDPASVLHISFGSQNTI---SS--SQMMELDIGLEASAKSFLWVITPPV 319 (427)
Q Consensus 266 ~~~l~~~l~~~~~~~vV~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~~ 319 (427)
+..+..|+...+.++.|+||+||.... .. ..+..++++++.++..+|.++....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 356777998888899999999998653 22 4788999999999999999998763
No 113
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.07 E-value=0.055 Score=43.68 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=64.8
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCC
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTEN 86 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 86 (427)
||++++.....| ...+++.|.+ +||+|++++.....+..... .++++..++.+ .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----------~~i~~~~~~~~-------~---- 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK-RGYDVHIITPRNDYEKYEII-----------EGIKVIRLPSP-------R---- 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----------CCeEEEEecCC-------C----
Confidence 477777766666 4577999999 99999999985554333221 67888866521 0
Q ss_pred CccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch---HHHHHHHhC-CceEEEec
Q 035495 87 TENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW---AVDVAKSAG-STNVTFAT 152 (427)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~---~~~~A~~lg-iP~v~~~~ 152 (427)
.. .. ..+ . + -.+..++++.+ ||+|.+-..... +..++...+ +|++....
T Consensus 55 -k~-~~---~~~-~-~----~~l~k~ik~~~------~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 55 -KS-PL---NYI-K-Y----FRLRKIIKKEK------PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -Cc-cH---HHH-H-H----HHHHHHhccCC------CCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 00 11 111 1 1 24566677665 999987765442 334566778 88886543
No 114
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.82 E-value=2.3 Score=42.37 Aligned_cols=46 Identities=13% Similarity=-0.089 Sum_probs=31.0
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CCh-hhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CGW-NSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG~-~s~~eal~~GvP~v~~P~ 391 (427)
+.++.+....+.. .+++.++ ++|.- -|. .+.+||+++|+|.|+...
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~ 397 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRT 397 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccC
Confidence 4566655555543 4778888 45532 244 378999999999998654
No 115
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.65 E-value=1.7 Score=39.68 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc--chHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccc
Q 035495 13 LMAHGHLIPFLALAKQIHRSTGFKITIANTPL--NIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENL 90 (427)
Q Consensus 13 ~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
....-|+.-+..+-.+|.+ +||+|.+-+-+. -.+.+.. .|+.+.++.-. + ...+
T Consensus 7 I~n~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~------------ygf~~~~Igk~----g-------~~tl 62 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL------------YGFPYKSIGKH----G-------GVTL 62 (346)
T ss_pred cCCcchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH------------hCCCeEeeccc----C-------CccH
Confidence 4455688889999999999 999998876432 3444555 66777766511 1 0111
Q ss_pred hhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecch
Q 035495 91 SLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (427)
. .++.... ...-.+.+++.+.+ ||+.+. ..++.+..+|-.+|+|.+.+.-+.
T Consensus 63 ~----~Kl~~~~-eR~~~L~ki~~~~k------pdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 63 K----EKLLESA-ERVYKLSKIIAEFK------PDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred H----HHHHHHH-HHHHHHHHHHhhcC------CceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 1 1222222 22344566777766 999999 667889999999999999987654
No 116
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.62 E-value=0.99 Score=42.26 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=40.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||+++-....|++.=..++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58999999999999999999999994 4999999999888877775
No 117
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.49 E-value=0.98 Score=43.96 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCcE-EEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc-h---HhhhcccCcceeec
Q 035495 295 SQMMELDIGLEASAKSF-LWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP-Q---LEILSHKSTGAFLS 369 (427)
Q Consensus 295 ~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp-q---~~ll~~~~v~~~I~ 369 (427)
..+..+++|+...+.++ ++.+|... ... ..++...++.. + ..+++.++ +||.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~------------~~~---------~~~v~~~g~~~~~~~l~~~y~~aD--vfV~ 312 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFS------------PFT---------AGNVVNHGFETDKRKLMSALNQMD--ALVF 312 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCC------------ccc---------ccceEEecCcCCHHHHHHHHHhCC--EEEE
Confidence 34567888888765443 44455431 000 23455556653 3 33455677 5654
Q ss_pred c----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC
Q 035495 370 H----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 370 H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
- |-.+++.||+++|+|+|+....+ ... +.+. +-|+.+++++
T Consensus 313 pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~d 357 (405)
T PRK10125 313 SSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEEE 357 (405)
T ss_pred CCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCCC
Confidence 3 33478999999999999987654 222 3333 5677777643
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.08 E-value=3.1 Score=39.34 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHH----HHHhC-CCcEEEEEcCCCCCCcchhhhccCCchhHH-HHhccCCCcEEec-
Q 035495 278 PASVLHISFGSQNTISSSQMMELDI----GLEAS-AKSFLWVITPPVGFDLRAEFRSEWLPEGFE-ERIKEIKQGLLVR- 350 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~~~~~~~~~~~----a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~- 350 (427)
.+..|++++=-..+.. +-++.+.+ .++.. +..+|....... .-.++. .... +..++.+.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~------------~v~e~~~~~L~-~~~~v~li~ 268 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP------------RVRELVLKRLK-NVERVKLID 268 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh------------hhhHHHHHHhC-CCCcEEEeC
Confidence 3557888765444433 33444444 44444 455555444321 111111 2222 13345543
Q ss_pred --cccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 351 --NWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 351 --~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
+|.+...++.++- +++|-.| |---||-..|+|++++=...+|+. +++ + |.-+.+..+
T Consensus 269 pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg~~ 327 (383)
T COG0381 269 PLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVGTD 327 (383)
T ss_pred CcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeCcc
Confidence 4677888999998 7888877 456799999999999998888887 333 4 666666543
No 119
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.85 E-value=1.3 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc--CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH--CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+.+. ..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC
Confidence 557888887765 568889996444444 33569999999999999864321 233445553 56776665
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=94.70 E-value=0.12 Score=50.24 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCcEEeccccchHh---hhcccCcceeeccCC----hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSHCG----WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
..+|.+.+|+++.+ ++..++..+||...- .++++||+++|+|+|+.. .......+.+. +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~ 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSK 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCC
Confidence 45688889999765 444433336765443 468999999999999854 44466677763 58888875
No 121
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.65 E-value=4.1 Score=38.58 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||+++-..+.|++.=..++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE 46 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc
Confidence 58999999999999999999999995 4899999999888877776
No 122
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.23 Score=48.81 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchH
Q 035495 277 DPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQL 356 (427)
Q Consensus 277 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~ 356 (427)
++.-+||+||+......++.+..=+.-++..+-.++|..+.+.+.++... + .+.-++.+-++...++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~-----l-~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINAR-----L-RDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHH-----H-HHHHHHcCCChhheeecCCCCCH
Confidence 34669999999999999999988888888888999999887531111100 1 11111111114455566666643
Q ss_pred ---hhhcccCcceeec---cCChhhHHHHHhcCCcEEeccCcccch
Q 035495 357 ---EILSHKSTGAFLS---HCGWNSVLESLSQGLPTIGWPIAAEQT 396 (427)
Q Consensus 357 ---~ll~~~~v~~~I~---HgG~~s~~eal~~GvP~v~~P~~~DQ~ 396 (427)
+=++-++ +|.. -||+-|..|+|-.|||+|..+ ++|+
T Consensus 501 ~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 501 DHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3444566 5654 699999999999999999987 5554
No 123
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=94.54 E-value=0.15 Score=42.66 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=48.1
Q ss_pred CCcEEeccccch---HhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQ---LEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq---~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..++.+.+++++ ..++..++ ++|+. |...++.||+++|+|+|+ .|...+...+.+. +.|..++..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~~~~ 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLFDPN 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEESTT
T ss_pred cccccccccccccccccccccce--eccccccccccccccccccccccceee----ccccCCceeeccc-cceEEeCCC
Confidence 567888899872 56788888 56665 566799999999999997 4466777777774 778888873
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=94.26 E-value=0.15 Score=40.78 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=37.6
Q ss_pred CCcEEeccccch-HhhhcccCcceeecc--CC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEE
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLSH--CG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l 412 (427)
.+|+.+.+|++. .++++.+++.+..+. -| .+++.|++++|+|+|+.+. ......+.. +.|..+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~ 118 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV 118 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE
Confidence 458999999974 557889998555442 23 4899999999999999776 133344443 777777
No 125
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.10 E-value=0.087 Score=43.14 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhHHHHHHH
Q 035495 21 PFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFFT 100 (427)
Q Consensus 21 P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (427)
-+..|+++|.+ +||+|++++.......-+. .. .++++..++.... .. ..... .+
T Consensus 6 ~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~----~~---~~~~~------~~-- 59 (160)
T PF13579_consen 6 YVRELARALAA-RGHEVTVVTPQPDPEDDEE-EE---------DGVRVHRLPLPRR----PW---PLRLL------RF-- 59 (160)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE---GGG-SE-EE---------TTEEEEEE--S-S----SS---GGGHC------CH--
T ss_pred HHHHHHHHHHH-CCCEEEEEecCCCCccccc-cc---------CCceEEeccCCcc----ch---hhhhH------HH--
Confidence 36789999999 9999999996544332111 11 6688887775311 10 00000 01
Q ss_pred HhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcc-hHHHHHH-HhCCceEEEec
Q 035495 101 SSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFG-WAVDVAK-SAGSTNVTFAT 152 (427)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~-~~~~~A~-~lgiP~v~~~~ 152 (427)
...+..++. ....++|+|.+..... ....+++ ..++|++....
T Consensus 60 -----~~~~~~~l~----~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 -----LRRLRRLLA----ARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -----HHHHHHHCH----HCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred -----HHHHHHHHh----hhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 122233331 1123499999876332 2334445 78999988754
No 126
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.23 E-value=0.57 Score=39.24 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=34.5
Q ss_pred cHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHh-CCceEEEe
Q 035495 106 KTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSA-GSTNVTFA 151 (427)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~ 151 (427)
.+.+...+.+++++ +-.||+||.....-.+..+-+.+ ++|.+.++
T Consensus 50 g~av~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 50 GQAVARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 44455556666643 56799999999877888999999 99999975
No 127
>PLN00142 sucrose synthase
Probab=92.74 E-value=1.1 Score=47.05 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=32.3
Q ss_pred eeecc---CCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecCC
Q 035495 366 AFLSH---CGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 366 ~~I~H---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 416 (427)
+||.- -|+ .++.||+++|+|+|+.. .......+++- .-|..+++.+
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV~P~D 718 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHIDPYH 718 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEeCCCC
Confidence 56643 455 48999999999999864 34566666663 5688887643
No 128
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.63 E-value=8 Score=35.32 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=39.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||+++-..+.|++.-..++.++|++. .+-+|++++.+...+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58999999999999999999999993 3489999999888877766
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.59 E-value=0.8 Score=45.57 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=81.2
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHH---HHhccCCCcEEecccc
Q 035495 277 DPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFE---ERIKEIKQGLLVRNWA 353 (427)
Q Consensus 277 ~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~v~~~~~v 353 (427)
++.-|||.+|--....+++.++.-.+-+++.+..++|..+..-- .+ +.++ +.....++.+++.+-+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~----ge-------~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV----GE-------QRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc----ch-------HHHHHHHHHhCCCccceeecccc
Confidence 34569999999988999999999999999999999999886520 00 1111 1111115566665554
Q ss_pred chHhhhcc---cC--cceeeccCChhhHHHHHhcCCcEEeccCcccchhhH-HHHHhhhceeEEEecC
Q 035495 354 PQLEILSH---KS--TGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNS-KMLVEEMGVAVEMTRG 415 (427)
Q Consensus 354 pq~~ll~~---~~--v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na-~~v~~~lG~G~~l~~~ 415 (427)
+-.+-..+ ++ ..-+.|. |+-|.++.|..|||||.+|.-.--...| ..+.. +|+|-.+.++
T Consensus 825 ~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~ 890 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKN 890 (966)
T ss_pred chHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhh
Confidence 43322222 12 1123443 7889999999999999999644333333 34455 6888766653
No 130
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.29 Score=40.12 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=46.6
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELP 72 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~ 72 (427)
|.+..|+|.+.-.|+.|-.--.+.++..|.+ .|+.|-=+-+++-++-=.. -|++.+++.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EVR~gGkR------------~GF~Ivdl~ 59 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEVREGGKR------------IGFKIVDLA 59 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeeeEEeeeeecCCeE------------eeeEEEEcc
Confidence 5567799999999999999999999999999 9999987666655533222 457777665
No 131
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=91.84 E-value=1.1 Score=43.10 Aligned_cols=62 Identities=8% Similarity=0.094 Sum_probs=43.3
Q ss_pred CCcEEeccccchHh---hhcccCcceeecc----CCh-hhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEE
Q 035495 344 KQGLLVRNWAPQLE---ILSHKSTGAFLSH----CGW-NSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 344 ~~~v~~~~~vpq~~---ll~~~~v~~~I~H----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l 412 (427)
..++.+.+++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l 325 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHL 325 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEE
Confidence 45788889998654 5888885 5532 343 578899999999999765 3355556663 567654
No 132
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=90.50 E-value=2 Score=42.97 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=45.3
Q ss_pred CCcEEeccccchHhhhcccCcceeec---cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEe
Q 035495 344 KQGLLVRNWAPQLEILSHKSTGAFLS---HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMT 413 (427)
Q Consensus 344 ~~~v~~~~~vpq~~ll~~~~v~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 413 (427)
..+|...++.+...++..++ ++|. .=| ..++.||+++|+|+|+.-.. ..+...+++- .-|..++
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~ 442 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIP 442 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEe
Confidence 45688889988889999999 4554 334 36899999999999996542 1234455552 4677766
No 133
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.27 E-value=1.5 Score=35.42 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
++++|++.+.++-+|-.-..-++..|++ +|++|+++....-.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCH
Confidence 5689999999999999999999999999 99999999975543
No 134
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.95 E-value=5.2 Score=39.85 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=45.4
Q ss_pred CCcEEeccccchHhhhcccCcceeecc----CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhh----h-ceeEEEec
Q 035495 344 KQGLLVRNWAPQLEILSHKSTGAFLSH----CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEE----M-GVAVEMTR 414 (427)
Q Consensus 344 ~~~v~~~~~vpq~~ll~~~~v~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----l-G~G~~l~~ 414 (427)
..+|.+.+...-..+++.+++ +|.- |-.+++.||+++|+|+|+. |.......+.+. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 568888886666788888885 4432 3347999999999999994 444455555551 0 26777766
Q ss_pred C
Q 035495 415 G 415 (427)
Q Consensus 415 ~ 415 (427)
.
T Consensus 427 ~ 427 (475)
T cd03813 427 A 427 (475)
T ss_pred C
Confidence 3
No 135
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=87.22 E-value=6.5 Score=35.76 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCcEEeccccchHhhhcccCcceeeccCChhhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~ 391 (427)
...+.+.+-++-.+|+.+++ .+||-.+ ..-.||+.+|+|++++..
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCeEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 33455556788889999999 6777755 477899999999999874
No 136
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=87.10 E-value=1.7 Score=35.96 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.1
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
..|=-.-+..|+++|++ +||+|++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 45666778999999999 999999998653
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=86.83 E-value=6.6 Score=39.53 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCcEEeccccch-HhhhcccCcceeec---cCC-hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEecC
Q 035495 344 KQGLLVRNWAPQ-LEILSHKSTGAFLS---HCG-WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 344 ~~~v~~~~~vpq-~~ll~~~~v~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 415 (427)
..+|.+.+|..+ ..+++.++ +||. +-| .+++.||+++|+|+|+... ..+...+.+. ..|..++.+
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC
Confidence 467888898654 45788888 5664 345 4799999999999998664 3455666664 677777663
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=86.72 E-value=19 Score=33.64 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCE-EEeCccCCCCCCCCCCCchhhhhhccCC--CCCeEEEEecCCc---ccCCHHHHHH----HHHHHHhCCCcEEEEE
Q 035495 246 LPV-WAIGPLLPQSYLKKSKNPEKIIEWLDLH--DPASVLHISFGSQ---NTISSSQMME----LDIGLEASAKSFLWVI 315 (427)
Q Consensus 246 ~~~-~~vGp~~~~~~~~~~~~~~~l~~~l~~~--~~~~vV~vs~Gs~---~~~~~~~~~~----~~~a~~~~~~~~i~~~ 315 (427)
+|+ ...|+++.-. +..+.+.-.+|...- -+++.+-|-.|.- ...+.+.... +.+..+..+.++.+++
T Consensus 113 ~Nvl~t~ga~~~i~---~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vtt 189 (311)
T PF06258_consen 113 PNVLPTLGAPNRIT---PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTT 189 (311)
T ss_pred CceEecccCCCcCC---HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 555 4578877654 112223333343221 1345555555532 2355664433 3334444555655555
Q ss_pred cCCCCCCcchhhhccCCchhHH----HHhccCCCcEEeccc---cchHhhhcccCcceeeccCChhhHHHHHhcCCcEEe
Q 035495 316 TPPVGFDLRAEFRSEWLPEGFE----ERIKEIKQGLLVRNW---APQLEILSHKSTGAFLSHCGWNSVLESLSQGLPTIG 388 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~v~~~~~---vpq~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~ 388 (427)
+.. -|+... ...+ ....+.+.+- =|+...|+.++. +|||--=.+-++||+..|+|+.+
T Consensus 190 SRR-------------Tp~~~~~~L~~~~~-~~~~~~~~~~~~~nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v 254 (311)
T PF06258_consen 190 SRR-------------TPPEAEAALRELLK-DNPGVYIWDGTGENPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYV 254 (311)
T ss_pred CCC-------------CcHHHHHHHHHhhc-CCCceEEecCCCCCcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEE
Confidence 443 222222 2221 1233322222 367889999994 55555556889999999999999
Q ss_pred ccCcccchh----hHHHHHhhhceeEEEecC
Q 035495 389 WPIAAEQTY----NSKMLVEEMGVAVEMTRG 415 (427)
Q Consensus 389 ~P~~~DQ~~----na~~v~~~lG~G~~l~~~ 415 (427)
+|.-. +.. ....+++. |+-..++..
T Consensus 255 ~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~~ 283 (311)
T PF06258_consen 255 LPLPG-RSGRFRRFHQSLEER-GAVRPFTGW 283 (311)
T ss_pred ecCCC-cchHHHHHHHHHHHC-CCEEECCCc
Confidence 99876 322 33456663 777766653
No 139
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=84.82 E-value=35 Score=32.05 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=40.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||+++-..+.|++.=..++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 58999999999999999999999995 4899999998877777665
No 140
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=84.39 E-value=2.1 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=34.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
||++.+.++-.|.....-++..|++ +|++|.++.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCC
Confidence 5899999999999999999999999 9999999875443
No 141
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=82.85 E-value=26 Score=34.48 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccc--
Q 035495 278 PASVLHISFGSQNTISSSQMMELDIGLEA-SAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAP-- 354 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vp-- 354 (427)
+..+++++ ....++.+....++ ++..|=+..+.. ..+.+... ..-+..+...++.+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te-------------~s~kL~~L-~~y~nvvly~~~~~~~ 340 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE-------------MSSKLMSL-DKYDNVKLYPNITTQK 340 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc-------------ccHHHHHH-HhcCCcEEECCcChHH
Confidence 45567776 25566666665555 455554433322 11233222 11134455556677
Q ss_pred hHhhhcccCcceeeccCC--hhhHHHHHhcCCcEEec
Q 035495 355 QLEILSHKSTGAFLSHCG--WNSVLESLSQGLPTIGW 389 (427)
Q Consensus 355 q~~ll~~~~v~~~I~HgG--~~s~~eal~~GvP~v~~ 389 (427)
-.+++..|++-+-|.||. ..++.||+.+|+|++..
T Consensus 341 l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~af 377 (438)
T TIGR02919 341 IQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGF 377 (438)
T ss_pred HHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEE
Confidence 367999999999999987 48999999999999964
No 142
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=81.86 E-value=27 Score=31.37 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=25.8
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v 49 (427)
|||+.==-+. |---+..|+++|++ +|+|+++.+...+.-.
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQRSAS 41 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCCccc
Confidence 6666542221 11227889999965 6899999887776543
No 143
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=81.38 E-value=4.1 Score=38.41 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=46.7
Q ss_pred CCcEEeccccchHhhhcc--cCcceeeccC-------C------hhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhce
Q 035495 344 KQGLLVRNWAPQLEILSH--KSTGAFLSHC-------G------WNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGV 408 (427)
Q Consensus 344 ~~~v~~~~~vpq~~ll~~--~~v~~~I~Hg-------G------~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~ 408 (427)
..||...+|+|++++..+ .+.+++...- . -+-+.+++++|+|+|+. ++...+..+++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 568999999998776432 1433332211 1 12277889999999985 467888999996 99
Q ss_pred eEEEec
Q 035495 409 AVEMTR 414 (427)
Q Consensus 409 G~~l~~ 414 (427)
|+.++.
T Consensus 281 G~~v~~ 286 (333)
T PRK09814 281 GFVVDS 286 (333)
T ss_pred eEEeCC
Confidence 999974
No 144
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.27 E-value=2.4 Score=33.68 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=37.6
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~ 52 (427)
+||++...++.+=+. ...+.++|.+ +|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhhh
Confidence 478888888877777 9999999999 99999999998888877774
No 145
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=80.81 E-value=3 Score=32.61 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=26.3
Q ss_pred cEEEEeCCCCcc---CHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHG---HLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~G---H~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|||+|+--|-.+ .-.-.++|+.+-++ |||+|.+++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~-RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR-RGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH-TT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH-CCCEEEEEEcCc
Confidence 478888777555 34568899999999 999999998644
No 146
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.98 E-value=14 Score=33.34 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=23.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
||+++.. .|. -..|+++|.+ +||+|+..+....
T Consensus 2 ~ILvlGG--T~e---gr~la~~L~~-~g~~v~~s~~t~~ 34 (256)
T TIGR00715 2 TVLLMGG--TVD---SRAIAKGLIA-QGIEILVTVTTSE 34 (256)
T ss_pred eEEEEec--hHH---HHHHHHHHHh-CCCeEEEEEccCC
Confidence 5665533 332 6789999999 9999998876544
No 147
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=79.90 E-value=16 Score=31.10 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=53.5
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcC--CCEEEEEeCCcc-hHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRST--GFKITIANTPLN-IQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPN 83 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~--Gh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 83 (427)
.++-+-..+.|-++-..+|+++|.+ + |++|.+-++... .+.+.+... +.+....+|++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~-~~p~~~illT~~T~tg~~~~~~~~~---------~~v~~~~~P~D--------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRK-QRPDLRILLTTTTPTGREMARKLLP---------DRVDVQYLPLD--------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT----TS-EEEEES-CCHHHHHHGG-G---------GG-SEEE---S---------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHH-hCCCCeEEEEecCCchHHHHHHhCC---------CCeEEEEeCcc---------
Confidence 4566667789999999999999998 6 899988886443 333444211 23344434532
Q ss_pred CCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEE-ecC-CcchHHHHHHHhCCceEEEec
Q 035495 84 TENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICII-TDT-FFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI-~D~-~~~~~~~~A~~lgiP~v~~~~ 152 (427)
....+..+++.++ ||++| .+. +.+.-...|++.|||.+.++-
T Consensus 83 ---------------------~~~~~~rfl~~~~------P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ---------------------FPWAVRRFLDHWR------PDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ---------------------SHHHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---------------------CHHHHHHHHHHhC------CCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1223466788887 88776 343 344566888889999999864
No 148
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=77.83 E-value=7.1 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=34.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
+|+++.+.+..-|-.-+..+|..|.+ +||+|.++.....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANVP 39 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB-
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCCC
Confidence 47899999999999999999999999 9999999965543
No 149
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.45 E-value=5.4 Score=34.25 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=37.1
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
|..+.+||++--.++.|=+.-...++++|.+ +||+|.++.++...+.+.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEECHhHHHHhh
Confidence 3334568887777766655557999999999 999999999877665543
No 150
>PHA01633 putative glycosyl transferase group 1
Probab=77.45 E-value=13 Score=35.00 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=31.6
Q ss_pred CCcEEec---cccchH---hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEec
Q 035495 344 KQGLLVR---NWAPQL---EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGW 389 (427)
Q Consensus 344 ~~~v~~~---~~vpq~---~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~ 389 (427)
+.++.+. +++++. .+++.++ +||.- =| ..++.||+++|+|+|+-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 5577776 455544 5677888 56653 34 46899999999999985
No 151
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=76.09 E-value=1.6 Score=37.23 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCccCHHHH------------HHHHHHHHhcCCCEEEEEeCCc
Q 035495 5 NEHIGMLPLMAHGHLIPF------------LALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~------------l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
..||++...|+.=.+.|. ..||+++.. +||+|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 457888877777776664 489999999 999999999864
No 152
>PHA02542 41 41 helicase; Provisional
Probab=76.09 E-value=20 Score=35.67 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=36.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=+++..-|+.|-..-.+.+|...++ .|+.|.|++-+...+.+.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEEVIA 234 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHH
Confidence 3667779999999999999999998 999999999887665443
No 153
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=75.01 E-value=54 Score=29.55 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=57.7
Q ss_pred HHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHH----HHhccCCCcEEe-----ccccchHhhhcccCcceeecc
Q 035495 300 LDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFE----ERIKEIKQGLLV-----RNWAPQLEILSHKSTGAFLSH 370 (427)
Q Consensus 300 ~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~v~~-----~~~vpq~~ll~~~~v~~~I~H 370 (427)
+.+.+++-+.+|+.+.+... |+... .++. ....++ .++=|+.+.|+.++- .++|-
T Consensus 189 l~k~l~~~g~~~lisfSRRT-------------p~~~~s~l~~~l~--s~~~i~w~~~d~g~NPY~~~La~Ady-ii~Ta 252 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT-------------PDTVKSILKNNLN--SSPGIVWNNEDTGYNPYIDMLAAADY-IISTA 252 (329)
T ss_pred HHHHHHhCCceEEEEeecCC-------------cHHHHHHHHhccc--cCceeEeCCCCCCCCchHHHHhhcce-EEEec
Confidence 56667778889988877652 22221 1122 111111 255699999999983 44445
Q ss_pred CChhhHHHHHhcCCcEEe--ccCc-ccchh-hHHHHHhhhceeEEEec
Q 035495 371 CGWNSVLESLSQGLPTIG--WPIA-AEQTY-NSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 371 gG~~s~~eal~~GvP~v~--~P~~-~DQ~~-na~~v~~~lG~G~~l~~ 414 (427)
--.|-.+||.+.|+|+.+ .|.+ .+.+. .-..+++ .|+++-.+.
T Consensus 253 DSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~e-q~~AR~f~~ 299 (329)
T COG3660 253 DSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVE-QKIARPFEG 299 (329)
T ss_pred chhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHH-hhhccccCc
Confidence 556889999999999765 3444 33322 2234454 366655443
No 154
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=74.77 E-value=15 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=23.4
Q ss_pred EeCCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCC
Q 035495 10 MLPLMAHGHLIPFLALAKQIHRST-GFKITIANTP 43 (427)
Q Consensus 10 ~~~~p~~GH~~P~l~La~~L~~~~-Gh~Vt~~~~~ 43 (427)
++..++-||+.=|+.|.+.+...+ .++..+++..
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~ 36 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEG 36 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcC
Confidence 344577899999999999993213 4555555543
No 155
>PRK08506 replicative DNA helicase; Provisional
Probab=74.20 E-value=33 Score=34.15 Aligned_cols=44 Identities=11% Similarity=0.008 Sum_probs=37.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=+++...|+.|-..-.+.+|...+. .|+.|.|++.+...+.+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHHHHHH
Confidence 4667779999999999999999988 8999999998876655443
No 156
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=74.12 E-value=13 Score=33.41 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEecCCcch-------HHHHHHHhCCceEEEe
Q 035495 107 TPLYNLLMDIKEKAGKPPICIITDTFFGW-------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~D~vI~D~~~~~-------~~~~A~~lgiP~v~~~ 151 (427)
+.+.+++++.. +++|| |..-++ +..+|+.+|||++.+-
T Consensus 56 ~~l~~~l~~~~------i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 56 EGLAEFLRENG------IDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHhCC------CcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 34456666544 77776 443443 4588999999999984
No 157
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=73.71 E-value=15 Score=32.92 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
++|+++..=+-| ..||+.|.+ +|+.|.+-+.....
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~-~g~~v~~Svat~~g 37 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAA-AGVDIVLSLAGRTG 37 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHh-CCCeEEEEEccCCC
Confidence 567777655555 478999999 99988876654433
No 158
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=73.11 E-value=20 Score=33.04 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=43.3
Q ss_pred eccccc---hHhhhcccCcceeecc--CChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEEEec
Q 035495 349 VRNWAP---QLEILSHKSTGAFLSH--CGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVEMTR 414 (427)
Q Consensus 349 ~~~~vp---q~~ll~~~~v~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 414 (427)
+.+++| +.++|+.|+++.|+|+ =|.|+++-.++.|+|+++-- +-+.+.. +.+ .|+-+-.+.
T Consensus 211 L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~ 276 (322)
T PRK02797 211 LTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG 276 (322)
T ss_pred hhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC
Confidence 456776 6779999999888876 58999999999999999853 2222322 344 366665444
No 159
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=72.83 E-value=20 Score=31.33 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=31.1
Q ss_pred EEEEeCC--CCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 7 HIGMLPL--MAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 7 ~il~~~~--p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+|++++. ++.|-.--.-.|+.+|+. +|++|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecC
Confidence 6777765 488999999999999999 99999999764
No 160
>PRK06321 replicative DNA helicase; Provisional
Probab=72.24 E-value=44 Score=33.25 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=35.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=|++...|+.|-..-.+.+|...+...|..|.|++-+.....+..
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 356777999999999999999987305999999998876554433
No 161
>PRK05595 replicative DNA helicase; Provisional
Probab=72.07 E-value=35 Score=33.64 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=35.2
Q ss_pred EEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++...|+.|-..-.+.+|..++ + .|+.|.|++.+...+.+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHHH
Confidence 55677899999999999999876 5 6999999999876655444
No 162
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=71.68 E-value=46 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=+++...|+.|-..-.+.+|..++ + .|+.|.|++.+...+.+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHH
Confidence 356777899999999999998887 6 7999999998876655443
No 163
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=71.50 E-value=20 Score=36.06 Aligned_cols=41 Identities=12% Similarity=0.295 Sum_probs=32.9
Q ss_pred CcEEeccccc--h-HhhhcccCcceeeccC---ChhhHHHHHhcCCcEE
Q 035495 345 QGLLVRNWAP--Q-LEILSHKSTGAFLSHC---GWNSVLESLSQGLPTI 387 (427)
Q Consensus 345 ~~v~~~~~vp--q-~~ll~~~~v~~~I~Hg---G~~s~~eal~~GvP~v 387 (427)
..|.+.++.. + ..++.++. ++|.=+ |.++..||+.+|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee
Confidence 5677888877 3 45777777 788766 6789999999999999
No 164
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=71.45 E-value=39 Score=25.94 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 18 HLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 18 H~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+=.-++.+|+.|.+ .|+++ ++++.....+++
T Consensus 10 ~K~~~~~~a~~l~~-~G~~i--~AT~gTa~~L~~ 40 (112)
T cd00532 10 VKAMLVDLAPKLSS-DGFPL--FATGGTSRVLAD 40 (112)
T ss_pred cHHHHHHHHHHHHH-CCCEE--EECcHHHHHHHH
Confidence 33457899999999 99998 345556666776
No 165
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=71.00 E-value=67 Score=29.12 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=27.7
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||+.-=-+. |-.-+..|+++|.. .| +|+++.+...+.-...
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~-~g-~V~VvAP~~eqSg~g~ 43 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSP-LG-EVDVVAPETPKSATGL 43 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHh-CC-cEEEEccCCCCccccc
Confidence 5555542222 22447889999998 88 7999988776654443
No 166
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.29 E-value=13 Score=34.77 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|-+++|||+++-.++.| .-+|..|++ .||+|++++-.. .+.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~-~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLAR-AGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHH-CCCeEEEEEeCC-HHHHHh
Confidence 55677899999888887 457888999 999999998754 344444
No 167
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=69.23 E-value=7.2 Score=29.01 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 22 FLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 22 ~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
++.+|+.|.+ .||++ ++++.....+++
T Consensus 2 ~~~~a~~l~~-lG~~i--~AT~gTa~~L~~ 28 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFEI--YATEGTAKFLKE 28 (95)
T ss_dssp HHHHHHHHHH-TTSEE--EEEHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCEE--EEChHHHHHHHH
Confidence 5789999999 99664 556666777777
No 168
>PRK08006 replicative DNA helicase; Provisional
Probab=68.93 E-value=45 Score=33.15 Aligned_cols=43 Identities=9% Similarity=-0.030 Sum_probs=35.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=|++..-|+.|-..-.+.+|...+ + .|+.|.|++-+...+.+.
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHH
Confidence 356677999999999999999887 4 599999999887655443
No 169
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=68.72 E-value=13 Score=32.15 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=36.0
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
+.+|++.+.++-.|-....-++..|.. +|++|+++....-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p 121 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVP 121 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCC
Confidence 579999999999999999999999999 9999999875443
No 170
>PRK06749 replicative DNA helicase; Provisional
Probab=68.71 E-value=54 Score=32.19 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=37.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=|++-.-|+.|-..-.+.+|...+. +|+.|.|++.+...+.+..
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~~ql~~ 231 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSSKQLLK 231 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCHHHHHH
Confidence 3667779999999999999999999 9999999998876655443
No 171
>PRK14098 glycogen synthase; Provisional
Probab=68.46 E-value=28 Score=34.81 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=33.4
Q ss_pred CCcEEeccccchH---hhhcccCcceeeccC---Ch-hhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSHC---GW-NSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~Hg---G~-~s~~eal~~GvP~v~~P~ 391 (427)
+.++.+.++++.. .+++.++ +|+.-. |. .+.+||+++|+|.|+...
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~ 413 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAG 413 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecC
Confidence 5678888888764 5788888 565432 22 378899999998888664
No 172
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.35 E-value=12 Score=30.08 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+++||++.+.+.-||=.-.--+++.|+. .|.+|...+.-
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLF 49 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCc
Confidence 6899999999999999999999999999 99999998743
No 173
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=67.59 E-value=26 Score=31.10 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCeEEEEecCCcc---cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccc--
Q 035495 278 PASVLHISFGSQN---TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNW-- 352 (427)
Q Consensus 278 ~~~vV~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-- 352 (427)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.. +. .+..-+.+..... ...+.+.+-
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-------~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-------EQ-EKEIADQIAAGLQ--NPVINLAGKTS 173 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-------HH-HHHHHHHHHTTHT--TTTEEETTTS-
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-------HH-HHHHHHHHHHhcc--cceEeecCCCC
Confidence 4667888888764 2567889999999988776765554432 10 0000011111100 113334333
Q ss_pred cch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEec
Q 035495 353 APQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 353 vpq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~ 389 (427)
+.| ..++.+++ ++|+. -.|.++=|.+.|+|+|++
T Consensus 174 l~e~~ali~~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 233 56888999 78876 457899999999999998
No 174
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.19 E-value=10 Score=34.21 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.1
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
...++|+-.|+.|-..=..+||.+|.. +|+.|+|++.+.....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHH
Confidence 347899999999999999999999999 9999999999777666655
No 175
>PRK14098 glycogen synthase; Provisional
Probab=67.15 E-value=10 Score=37.97 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeCC--------CCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 1 MGSENEHIGMLPL--------MAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 1 m~~~~~~il~~~~--------p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|+.++|||+|++. ++.|++ .-.|.++|++ +||+|.++.+-.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~-~g~~v~v~~P~y 49 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEE-EGFEARIMMPKY 49 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHH-CCCeEEEEcCCC
Confidence 6677899999873 333443 5678899999 999999998743
No 176
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=67.12 E-value=47 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 22 FLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 22 ~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
++.+++.|.+ .|+++ ++ ++.....+++
T Consensus 2 ~~~~~~~l~~-lG~~i-~A-T~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAE-LGFEL-VA-TGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHH-CCCEE-EE-ccHHHHHHHH
Confidence 4689999999 99998 34 4445666766
No 177
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.09 E-value=12 Score=26.73 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=31.7
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
.-++++..+...|...+-.+|+.|.+ +|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 56889999999999999999999999 999998764
No 178
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=66.68 E-value=15 Score=31.61 Aligned_cols=44 Identities=11% Similarity=-0.008 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
.+.+|++.+.++--|-....-++.-|.. +|++|++++...-.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDT 126 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHH
Confidence 3579999999999999999999999999 9999999986554333
No 179
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=66.65 E-value=30 Score=32.50 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCcEE-eccccc---hHhhhcccCcceeecc--CChhhHHHHHhcCCcEEec
Q 035495 344 KQGLL-VRNWAP---QLEILSHKSTGAFLSH--CGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 344 ~~~v~-~~~~vp---q~~ll~~~~v~~~I~H--gG~~s~~eal~~GvP~v~~ 389 (427)
..++. +.+++| +.++|..|+++.|.|. =|.|+++-.|+.|+|+++-
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~ 295 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS 295 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe
Confidence 34554 467888 5679999998777774 5899999999999999974
No 180
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=66.37 E-value=1.2e+02 Score=28.60 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++|+++-.-..|++.=.+++-..|++. -+.++++++.+.+.+.+..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~ 48 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL 48 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc
Confidence 4699999999999999999999999994 4699999999888877766
No 181
>PRK09165 replicative DNA helicase; Provisional
Probab=66.28 E-value=40 Score=33.83 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=35.1
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcC---------------CCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRST---------------GFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~---------------Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++...|+.|-..-.+.+|...+. + |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~-~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAK-AYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH-hhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 667778999999999999988875 4 789999998887655544
No 182
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=65.72 E-value=8.7 Score=30.52 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=29.3
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhh
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~ 52 (427)
..-.+.-.+-|+..|.+ +||+|++++++.....++-.
T Consensus 9 ~Pvq~p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKK-KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp STTHHHHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhc
Confidence 33445567899999999 99999999999888888763
No 183
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.67 E-value=7.9 Score=32.71 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=22.6
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|+|.++. +.|++- -.|+++... |||+||.++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~-RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALK-RGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHh-CCCeeEEEEeC
Confidence 3566665 223322 367899999 99999999853
No 184
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=65.37 E-value=10 Score=32.23 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+||++.-.++.|=+. ...+.+.|++ +|++|.++.++.....+..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~-~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTK-RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHH-CCCEEEEEEChhHHHHcCH
Confidence 478888888777666 8999999999 9999999999887777654
No 185
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=64.22 E-value=80 Score=25.95 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.9
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 035495 12 PLMAHGHLIPFLALAKQIHRSTGFKITIA 40 (427)
Q Consensus 12 ~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~ 40 (427)
+.+..|-..-.+.|++.|++ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 35677889999999999999 99999996
No 186
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=63.55 E-value=7.2 Score=34.55 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.3
Q ss_pred cEEEEeCCCCccCHHHH------------HHHHHHHHhcCCCEEEEEeC
Q 035495 6 EHIGMLPLMAHGHLIPF------------LALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~------------l~La~~L~~~~Gh~Vt~~~~ 42 (427)
|||++.+.|+.=.+.|. .+||++|.+ +||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~-~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA-AGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh-CCCEEEEEEC
Confidence 36777777776666553 378899999 9999999874
No 187
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.99 E-value=58 Score=30.52 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=34.8
Q ss_pred cEEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 6 EHIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 6 ~~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
+||+|++ -++.|-..-..++|-.|++ .|.+|.+++++.....
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCCch
Confidence 5788777 6788999999999999999 9999888887665543
No 188
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=1.4e+02 Score=28.16 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc---hHHhhhhhcCCCCCCCCCCceeEEEcC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN---IQYLQNTISSANPNSPEKFNINLVELP 72 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~---~~~v~~~~~~~~~~~~~~~~i~~~~~~ 72 (427)
+++.|+.++..+-.||--.|.-=|.-|+. .|.+|.+++.-.. .+.++. ++++++.++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~-~gf~VdliGy~~s~p~e~l~~h------------prI~ih~m~ 69 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAK-LGFQVDLIGYVESIPLEELLNH------------PRIRIHGMP 69 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHH-cCCeEEEEEecCCCChHHHhcC------------CceEEEeCC
Confidence 46789999999999999999999999999 9999999985433 233333 889999877
No 189
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=62.02 E-value=14 Score=31.77 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=31.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||||+.-=-+. +-.-+..|+++|.+ .||+|+++.+...+.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg~g~ 44 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA-LGHDVVVVAPDSEQSGTGH 44 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT-TSSEEEEEEESSSTTTSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh-cCCeEEEEeCCCCCcCcce
Confidence 46777664444 44457899999988 8899999999877655433
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.59 E-value=20 Score=28.14 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
||++.+.++-.|..-..-++.-|+. .|++|.++....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCCCC
Confidence 6899999999999999999999999 9999999986443
No 191
>PRK05920 aromatic acid decarboxylase; Validated
Probab=61.56 E-value=16 Score=31.59 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=36.7
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
++||++--.++.+= .=.+.+.++|.+ .||+|.++.++.....+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLA-ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHH-CCCEEEEEEChhHHHHHHH
Confidence 46788776665555 578999999999 9999999999888777765
No 192
>PRK09620 hypothetical protein; Provisional
Probab=61.55 E-value=9.7 Score=33.72 Aligned_cols=38 Identities=5% Similarity=-0.028 Sum_probs=29.0
Q ss_pred CcEEEEeCCCCccCHHHH------------HHHHHHHHhcCCCEEEEEeCC
Q 035495 5 NEHIGMLPLMAHGHLIPF------------LALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~------------l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
.++|++...|+.=.+.|. ..||++|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 467888877765554443 489999999 99999999754
No 193
>PRK08760 replicative DNA helicase; Provisional
Probab=61.30 E-value=60 Score=32.36 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=34.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=+++..-|+.|-..-.+.+|...+...|+.|.|++.+...+.+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 36677799999999999999988740599999999887655433
No 194
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=60.76 E-value=72 Score=24.25 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhHHHH
Q 035495 18 HLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIIN 97 (427)
Q Consensus 18 H~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (427)
+-.-++.+++.|.+ .|+++. +++.....+.+ .|+.+..+... ..
T Consensus 11 ~k~~~~~~~~~l~~-~G~~l~--aT~gT~~~l~~------------~gi~~~~v~~~------~~--------------- 54 (110)
T cd01424 11 DKPEAVEIAKRLAE-LGFKLV--ATEGTAKYLQE------------AGIPVEVVNKV------SE--------------- 54 (110)
T ss_pred cHhHHHHHHHHHHH-CCCEEE--EchHHHHHHHH------------cCCeEEEEeec------CC---------------
Confidence 55668899999999 999983 45556667776 55665544311 00
Q ss_pred HHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCC-------cchHHHHHHHhCCceEE
Q 035495 98 FFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTF-------FGWAVDVAKSAGSTNVT 149 (427)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~-------~~~~~~~A~~lgiP~v~ 149 (427)
..+.+.+++++-+ +|+||.-.- .+.....|-..|||++.
T Consensus 55 -------~~~~i~~~i~~~~------id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -------GRPNIVDLIKNGE------IQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -------CchhHHHHHHcCC------eEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1233445555433 999997431 23456888899999995
No 195
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.88 E-value=16 Score=33.38 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHhcCCcEEeccCcccc--hhhHHHHHhhhceeEEEecCC
Q 035495 377 LESLSQGLPTIGWPIAAEQ--TYNSKMLVEEMGVAVEMTRGV 416 (427)
Q Consensus 377 ~eal~~GvP~v~~P~~~DQ--~~na~~v~~~lG~G~~l~~~~ 416 (427)
-+++--|||+|.+|-.+-| +..|.|=.+-||..+.+-..+
T Consensus 324 EQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~ 365 (412)
T COG4370 324 EQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE 365 (412)
T ss_pred HHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc
Confidence 3467789999999999988 678888888789998886644
No 196
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=59.77 E-value=16 Score=34.69 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=41.6
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||+++-..+.|++.=..++.++|++. .+.+|++++.+.+.+.++.
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 479999999999999999999999995 5899999999888887776
No 197
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.31 E-value=1e+02 Score=25.52 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=29.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
-|.+++.++.|-....+.+|-+.+. +|++|.++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG-HGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4778899999999999999999998 999999943
No 198
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=59.01 E-value=17 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=36.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~-Gh~Vt~~~~~~~~~~v~~ 51 (427)
+||++.-.++.| .+=...+.++|.+ + ||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k-~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRD-VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHh-hcCCeEEEEECHHHHHHHHH
Confidence 488888888777 5558999999998 6 999999999888877765
No 199
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.21 E-value=11 Score=37.17 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred CcEEEEeCCCCccCHHHHH------------HHHHHHHhcCCCEEEEEeCCc
Q 035495 5 NEHIGMLPLMAHGHLIPFL------------ALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l------------~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
.+||++...|++=.+.|.. .||+++.. +|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~-~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA-AGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH-CCCcEEEEeCCc
Confidence 4689999999998888864 89999999 999999998754
No 200
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=57.93 E-value=1.1e+02 Score=27.65 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=29.5
Q ss_pred CcEEE-EeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 5 NEHIG-MLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 5 ~~~il-~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
..|++ |++ .++.|-..-...||..|++ .|++|.++-..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 34444 444 5678888889999999999 99999999653
No 201
>PRK08840 replicative DNA helicase; Provisional
Probab=56.96 E-value=95 Score=30.86 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=35.7
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=+++..-|+.|-..-.+.+|...+...|+.|.|++.+...+.+..
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~ 263 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMM 263 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence 356677999999999999999987305999999998876655443
No 202
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=56.74 E-value=20 Score=32.45 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=26.6
Q ss_pred eEEEEecCCcccCCHH-HHHHHHHHHHh--CCCcEEEEEcCC
Q 035495 280 SVLHISFGSQNTISSS-QMMELDIGLEA--SAKSFLWVITPP 318 (427)
Q Consensus 280 ~vV~vs~Gs~~~~~~~-~~~~~~~a~~~--~~~~~i~~~~~~ 318 (427)
.++++||||......+ .+..+.+.+++ .+..+.|...+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4799999999775544 77778777776 789999998765
No 203
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.59 E-value=30 Score=30.28 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
++.+|++.+.++-.|-....-++..|.. +|++|.+++...-
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp 127 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVMVP 127 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCCCC
Confidence 4579999999999999999999999999 9999999996543
No 204
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=56.59 E-value=37 Score=31.71 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=40.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||+++-..+.|++.=..++.+.|++. -+.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 489999999999999999999999994 4999999999877776654
No 205
>PRK05636 replicative DNA helicase; Provisional
Probab=56.50 E-value=49 Score=33.25 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=34.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=|++...|+.|-..-.+.+|...+ + .|..|.|++.+...+.+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIV 310 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHH
Confidence 356777999999999999998876 4 589999999887655443
No 206
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.49 E-value=87 Score=30.75 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=35.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=+++...|+.|=..-.+.+|..++...|+.|.|++.+...+.+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 35667789999999999999987741599999999887665543
No 207
>PRK05748 replicative DNA helicase; Provisional
Probab=56.13 E-value=1e+02 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=36.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=+++...|+.|-..-.+.+|...+ + +|+.|.|++.+...+.+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~ 249 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVM 249 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHH
Confidence 467777999999999999999886 4 5999999998876655443
No 208
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=56.03 E-value=64 Score=27.47 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcC
Q 035495 20 IPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELP 72 (427)
Q Consensus 20 ~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~ 72 (427)
.-++.+|+.|.+ .|+++. ++......+++ .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~-lGf~I~--AT~GTAk~L~e------------~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVE-LGVEIL--STGGTAKFLKE------------AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHH-CCCEEE--EccHHHHHHHH------------cCCeEEEhh
Confidence 347899999999 999983 55567777887 566666554
No 209
>PRK07004 replicative DNA helicase; Provisional
Probab=55.71 E-value=81 Score=31.29 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=35.2
Q ss_pred EEEeCCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~-~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++...|+.|-..-.+.+|..++ + .|+.|.|++-+...+.+..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~ 259 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAM 259 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHH
Confidence 66677999999999999999876 4 6999999998887655433
No 210
>PRK07773 replicative DNA helicase; Validated
Probab=55.07 E-value=87 Score=34.09 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=35.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
=|++..-|+.|-..-.+.+|...+...|..|.|++.+...+.+..
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 366777999999999999999987514899999998876655444
No 211
>PLN02470 acetolactate synthase
Probab=54.88 E-value=42 Score=34.46 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=51.9
Q ss_pred ecCCcccCCH--HHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEe--c------cccc
Q 035495 285 SFGSQNTISS--SQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLV--R------NWAP 354 (427)
Q Consensus 285 s~Gs~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~------~~vp 354 (427)
+|||....+. ...+.+++.|++.+.+.|+-+.... ...+.+.+.. ..++.. . .++-
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~-------------~~~l~dal~~-~~~i~~i~~rhE~~A~~~A 67 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGA-------------SMEIHQALTR-SNCIRNVLCRHEQGEVFAA 67 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcc-------------cHHHHHHHhc-cCCceEEEeccHHHHHHHH
Confidence 4666654332 2356788888888888888877652 0111111110 111111 0 1111
Q ss_pred hHhhhcccCcceeeccCCh------hhHHHHHhcCCcEEecc
Q 035495 355 QLEILSHKSTGAFLSHCGW------NSVLESLSQGLPTIGWP 390 (427)
Q Consensus 355 q~~ll~~~~v~~~I~HgG~------~s~~eal~~GvP~v~~P 390 (427)
...-..+..++++++|.|- +++.+|...++|+|++.
T Consensus 68 dgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 68 EGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1111122345578888884 58999999999999985
No 212
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=54.86 E-value=45 Score=29.85 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhHHHHHHHH
Q 035495 22 FLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFFTS 101 (427)
Q Consensus 22 ~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (427)
+..|+++|+. +++|+++.++.++.-... .---+.++... .+..........|. ....-.
T Consensus 16 i~aL~~al~~--~~dV~VVAP~~~qSg~s~------------slTl~~Plr~~----~~~~~~~av~GTPa---DCV~la 74 (252)
T COG0496 16 IRALARALRE--GADVTVVAPDREQSGASH------------SLTLHEPLRVR----QVDNGAYAVNGTPA---DCVILG 74 (252)
T ss_pred HHHHHHHHhh--CCCEEEEccCCCCccccc------------ccccccCceee----EeccceEEecCChH---HHHHHH
Q ss_pred hcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch-------------HHHHHHHhCCceEEEe
Q 035495 102 SQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW-------------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~-------------~~~~A~~lgiP~v~~~ 151 (427)
+ ..++++.. ||+||+-.-.-. |..-|..+|||.|.++
T Consensus 75 l-------~~l~~~~~------pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S 124 (252)
T COG0496 75 L-------NELLKEPR------PDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAIS 124 (252)
T ss_pred H-------HHhccCCC------CCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeee
No 213
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=54.34 E-value=65 Score=30.44 Aligned_cols=99 Identities=7% Similarity=0.008 Sum_probs=59.3
Q ss_pred CCeEEEEecCCcc----cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccC-CCc-EEecc
Q 035495 278 PASVLHISFGSQN----TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEI-KQG-LLVRN 351 (427)
Q Consensus 278 ~~~vV~vs~Gs~~----~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~-v~~~~ 351 (427)
+++.|.+.-|+.. ..+.+.+.++++.+.+.+.++++. +... |. ...+.+....... ..+ +-+.+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~------e~---~~~~~i~~~~~~~~~~~~~~l~g 248 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK------DH---EAGNEILAALNTEQQAWCRNLAG 248 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH------hH---HHHHHHHHhcccccccceeeccC
Confidence 4667888888742 256788999998887767777655 4331 11 0111111111100 011 12223
Q ss_pred c--cch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEec
Q 035495 352 W--APQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 352 ~--vpq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~ 389 (427)
- +.+ ..++++++ +||+. -.|-++=|.+.|+|+|++
T Consensus 249 ~~sL~el~ali~~a~--l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 249 ETQLEQAVILIAACK--AIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CCCHHHHHHHHHhCC--EEEec-CChHHHHHHHhCCCEEEE
Confidence 2 333 56888999 78876 568899999999999875
No 214
>PHA01630 putative group 1 glycosyl transferase
Probab=54.04 E-value=1e+02 Score=28.99 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=27.7
Q ss_pred cccchHh---hhcccCcceeec-cCC-hhhHHHHHhcCCcEEeccC
Q 035495 351 NWAPQLE---ILSHKSTGAFLS-HCG-WNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 351 ~~vpq~~---ll~~~~v~~~I~-HgG-~~s~~eal~~GvP~v~~P~ 391 (427)
.++|+.+ +++.+++-++-+ ..| ..++.||+++|+|+|+.-.
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 3466544 578888522222 333 4689999999999999764
No 215
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=53.00 E-value=1.5e+02 Score=25.45 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=32.8
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
+-.|.+++..+.|-....+.+|.+.+. +|++|.++-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG-HGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEEE
Confidence 457899999999999999999999999 999999986
No 216
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=52.49 E-value=67 Score=29.67 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeecc
Q 035495 291 TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSH 370 (427)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~H 370 (427)
..+...+..+.++.++++..+++.++... .+-+. ... ....+.=..-...+|+++.++.|
T Consensus 140 ~~~~~~~~pi~~~a~~~gvpv~ihtG~~~------------~~~~~-------~~~-~~~p~~~~~va~~fP~l~IVl~H 199 (293)
T COG2159 140 YPDDPRLYPIYEAAEELGVPVVIHTGAGP------------GGAGL-------EKG-HSDPLYLDDVARKFPELKIVLGH 199 (293)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEEeCCCC------------CCccc-------ccC-CCCchHHHHHHHHCCCCcEEEEe
Confidence 34455678899999999999999888652 11000 000 00011113445567899999999
Q ss_pred CC--hhhHHHH
Q 035495 371 CG--WNSVLES 379 (427)
Q Consensus 371 gG--~~s~~ea 379 (427)
+| ..=..|+
T Consensus 200 ~G~~~p~~~~a 210 (293)
T COG2159 200 MGEDYPWELEA 210 (293)
T ss_pred cCCCCchhHHH
Confidence 99 4444444
No 217
>PRK14099 glycogen synthase; Provisional
Probab=52.41 E-value=24 Score=35.30 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=28.9
Q ss_pred CCcEEEEeCC--------CCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 4 ENEHIGMLPL--------MAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 4 ~~~~il~~~~--------p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
++|||+|++. ++.|++ .-.|.++|++ +||+|.++.+-.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~-~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKA-HGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHH-CCCcEEEEeCCC
Confidence 5689999873 334444 5578889999 999999998743
No 218
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=51.98 E-value=1.6e+02 Score=26.70 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=20.1
Q ss_pred HHHHHHHHHhc--CCCEEEEEeCCcchHHhhh
Q 035495 22 FLALAKQIHRS--TGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 22 ~l~La~~L~~~--~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+.+|+++|... +|++|+++.+...+.-...
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~gh 47 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGH 47 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcc
Confidence 55677777651 3589999998776654443
No 219
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=51.71 E-value=92 Score=30.55 Aligned_cols=136 Identities=11% Similarity=0.131 Sum_probs=68.3
Q ss_pred hhhhccCCCCCeEEEEecCCccc------CC----HHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHH
Q 035495 269 IIEWLDLHDPASVLHISFGSQNT------IS----SSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEE 338 (427)
Q Consensus 269 l~~~l~~~~~~~vV~vs~Gs~~~------~~----~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (427)
+..|+...+.+++|-||...... .. .+.+.++++.+.+.++++++...... .+. ...+.......+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~-~~~-~~~dD~~~~~~l~~ 301 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTG-IDS-YNKDDRMVALNLRQ 301 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccC-ccC-CCCchHHHHHHHHH
Confidence 34455433345678787654321 11 12344455656566888776643210 000 00000001112222
Q ss_pred HhccCCCc--EEeccccch--HhhhcccCcceeeccCChhhHHHHHhcCCcEEeccCcccchhhHHHHHhhhceeEE-Ee
Q 035495 339 RIKEIKQG--LLVRNWAPQ--LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGWPIAAEQTYNSKMLVEEMGVAVE-MT 413 (427)
Q Consensus 339 ~~~~~~~~--v~~~~~vpq--~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~-l~ 413 (427)
... .+.+ ++..++=|. ..++++++ ++|..==+ ++.-|+..|||.+++++ | +-....+.+ +|..-. ++
T Consensus 302 ~~~-~~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~ 373 (426)
T PRK10017 302 HVS-DPARYHVVMDELNDLEMGKILGACE--LTVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAID 373 (426)
T ss_pred hcc-cccceeEecCCCChHHHHHHHhhCC--EEEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEec
Confidence 222 1222 223223343 37888888 67754323 55668899999999997 3 444445577 688755 44
Q ss_pred c
Q 035495 414 R 414 (427)
Q Consensus 414 ~ 414 (427)
.
T Consensus 374 ~ 374 (426)
T PRK10017 374 I 374 (426)
T ss_pred h
Confidence 4
No 220
>PRK13236 nitrogenase reductase; Reviewed
Probab=51.55 E-value=31 Score=31.93 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCCCCcEEE-EeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 1 MGSENEHIG-MLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 1 m~~~~~~il-~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|..+.+|++ |..=++.|-..-.+.||.+|++ +|++|.++-..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D 43 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCD 43 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEcc
Confidence 565666666 5557789999999999999999 99999999543
No 221
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=51.45 E-value=1.8e+02 Score=25.98 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred CcEEE-ecCCcc-hHHHHHHHhCCceEEEecch
Q 035495 124 PICII-TDTFFG-WAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 124 ~D~vI-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 154 (427)
||+++ .|+..- -|+.-|.++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 88665 665432 57788999999999987654
No 222
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=51.34 E-value=41 Score=32.27 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=34.3
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v 49 (427)
+++.--|+.|-..-++.+|..++. .|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHH
Confidence 556667899999999999999999 99999999987655444
No 223
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=50.95 E-value=34 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=26.6
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEE
Q 035495 281 VLHISFGSQNTISSSQMMELDIGLEASAKSFLWVI 315 (427)
Q Consensus 281 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 315 (427)
.+|+|+||-.......++..++++.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999877677778889999988665334443
No 224
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=50.60 E-value=1.6e+02 Score=26.52 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=27.7
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||+.-=-+. |-.-+..|+++|.+ . |+|+++.+...+.-...
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~-~~V~VvAP~~~qSg~g~ 43 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALRE-L-ADVTVVAPDRERSGASH 43 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHh-C-CCEEEEeCCCCCcCCcc
Confidence 5555542222 22337789999999 8 79999998776655443
No 225
>PRK11823 DNA repair protein RadA; Provisional
Probab=50.55 E-value=47 Score=32.79 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
-+++.--|+.|-..-++.++..+++ +|++|.|++.+...+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHH
Confidence 3556668899999999999999999 999999999887655543
No 226
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=50.44 E-value=21 Score=35.63 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=37.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
.-+++.-.|+.|-..-.+.++.+.++ +|..|.+++.++..+.+..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLR 308 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHH
Confidence 34677778899999999999999999 9999999998876655444
No 227
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.34 E-value=30 Score=29.48 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=33.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
||++--.++.|=+.-.+.+.++|.+ .|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~-~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD-EGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh-CcCEEEEEEchhHHH
Confidence 6777777777777777799999999 999999998876554
No 228
>PRK11519 tyrosine kinase; Provisional
Probab=50.17 E-value=36 Score=35.95 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=33.0
Q ss_pred CcEEEEeC--CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 5 NEHIGMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 5 ~~~il~~~--~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+.++++++ .|+.|-..-...||..|+. .|++|.++-......
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dlr~~ 568 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKG 568 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC
Confidence 34555544 6788999999999999999 999999997654433
No 229
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.13 E-value=14 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
+|.++-.+..|+ ++|..|++ +||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH-cCCEEEEEeccH
Confidence 467777777775 78999999 999999999864
No 230
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=50.07 E-value=83 Score=28.23 Aligned_cols=68 Identities=12% Similarity=-0.035 Sum_probs=45.0
Q ss_pred CCcEEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhc---CCCCCCCCCCceeEEEcC
Q 035495 4 ENEHIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTIS---SANPNSPEKFNINLVELP 72 (427)
Q Consensus 4 ~~~~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~---~~~~~~~~~~~i~~~~~~ 72 (427)
++.+-.|+- -++.|-..-.-.||-+|+. -+|.|.++++.+....-.+.+. +..-.+||..++-...|.
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEID 88 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEID 88 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecC
Confidence 345555655 5688999999999999999 9999999998876644333222 222234555555444443
No 231
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=49.66 E-value=50 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=24.4
Q ss_pred ccCcceeeccCChhhHHHHHhc----CCcEEeccC
Q 035495 361 HKSTGAFLSHCGWNSVLESLSQ----GLPTIGWPI 391 (427)
Q Consensus 361 ~~~v~~~I~HgG~~s~~eal~~----GvP~v~~P~ 391 (427)
.++ ++|+-||-||+.+|+.. ++|++++-.
T Consensus 63 ~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 63 RAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 456 89999999999999773 789998775
No 232
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=49.46 E-value=1.5e+02 Score=28.88 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.0
Q ss_pred CcEEEecCCcchHHHHHHHhCCceEEEec
Q 035495 124 PICIITDTFFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 124 ~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (427)
||++|... -+..+|+++|||.+.+..
T Consensus 351 pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 351 PDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 99999883 477899999999998653
No 233
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=49.12 E-value=68 Score=31.74 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=35.5
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=+++.--|+.|-..-++.++..+.. +|++|.|++.++..+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHH
Confidence 3556668899999999999999999 999999999887655443
No 234
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=48.81 E-value=29 Score=32.38 Aligned_cols=95 Identities=15% Similarity=-0.025 Sum_probs=56.8
Q ss_pred CeEEE-EecCCcc--cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEecc--cc
Q 035495 279 ASVLH-ISFGSQN--TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRN--WA 353 (427)
Q Consensus 279 ~~vV~-vs~Gs~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~v 353 (427)
++.|. +-.||.. ..+.+.+.++++.+.+.+.++++..+... |. ...+.+.+. ..++.+.+ .+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~---~~~~~i~~~----~~~~~l~g~~sL 244 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------EE---QRAKRLAEG----FPYVEVLPKLSL 244 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HH---HHHHHHHcc----CCcceecCCCCH
Confidence 34443 4444432 25678899999988777778766545431 10 011111111 11222323 23
Q ss_pred ch-HhhhcccCcceeeccCChhhHHHHHhcCCcEEec
Q 035495 354 PQ-LEILSHKSTGAFLSHCGWNSVLESLSQGLPTIGW 389 (427)
Q Consensus 354 pq-~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v~~ 389 (427)
.+ ..++++++ +||+. -.|.++=|.+.|+|+|++
T Consensus 245 ~elaali~~a~--l~I~n-DSGp~HlA~A~g~p~val 278 (322)
T PRK10964 245 EQVARVLAGAK--AVVSV-DTGLSHLTAALDRPNITL 278 (322)
T ss_pred HHHHHHHHhCC--EEEec-CCcHHHHHHHhCCCEEEE
Confidence 44 56888999 78887 458899999999999986
No 235
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=48.66 E-value=80 Score=26.66 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhhcCCCCcEEEecCCc-chHHHHHHHhCCceEEEecc
Q 035495 108 PLYNLLMDIKEKAGKPPICIITDTFF-GWAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 108 ~~~~~l~~~~~~~~~~~D~vI~D~~~-~~~~~~A~~lgiP~v~~~~~ 153 (427)
.+.+.++++. ||++|+-.+. ..-..+-+.....++.++++
T Consensus 70 ~~~~~l~~~~------~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 70 ELLELLESLN------PDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHTT-------SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred HHHHHHHhhc------cceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 3456666666 9999877543 33445567777788888765
No 236
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.25 E-value=26 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=26.7
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 12 PLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 12 ~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
|.-..-.+...+-+...|.. +|.+|++++++...
T Consensus 11 CPeiP~qissaiYls~klkk-kgf~v~VaateAa~ 44 (148)
T COG4081 11 CPEIPPQISSAIYLSHKLKK-KGFDVTVAATEAAL 44 (148)
T ss_pred CCCCCccchHHHHHHHHhhc-cCccEEEecCHhhh
Confidence 34455567778899999999 99999999986443
No 237
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.08 E-value=1.9e+02 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 108 PLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 108 ~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
.+.+.++..+ ||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~~~------pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTEP------VDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhcC------CCEEEECcc---HHHHHHHhCCCEEEee
Confidence 3344455444 999999863 6889999999998764
No 238
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=47.94 E-value=88 Score=25.84 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=52.4
Q ss_pred hhhhhhccCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCc
Q 035495 267 EKIIEWLDLHDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQG 346 (427)
Q Consensus 267 ~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (427)
.++-+||... +...++-|. ...+.+..++..+.+-+++=.+.... . ...+. ...
T Consensus 21 ~~lg~~La~~---g~~lv~Gg~-----~GlM~a~a~ga~~~gg~viGVlp~~l--------~--~~~~~--------~~~ 74 (159)
T TIGR00725 21 YRLGKELAKK---GHILINGGR-----TGVMEAVSKGAREAGGLVVGILPDED--------F--AGNPY--------LTI 74 (159)
T ss_pred HHHHHHHHHC---CCEEEcCCc-----hhHHHHHHHHHHHCCCeEEEECChhh--------c--cCCCC--------ceE
Confidence 4455666443 235555332 23556666666666666655544321 0 00000 111
Q ss_pred EEeccc-cchHhhhc-ccCcceeeccCChhhHHH---HHhcCCcEEeccC
Q 035495 347 LLVRNW-APQLEILS-HKSTGAFLSHCGWNSVLE---SLSQGLPTIGWPI 391 (427)
Q Consensus 347 v~~~~~-vpq~~ll~-~~~v~~~I~HgG~~s~~e---al~~GvP~v~~P~ 391 (427)
....++ .+-..++. .++ ..++--||.||+.| ++.+++|+++++.
T Consensus 75 ~i~~~~~~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 75 KVKTGMNFARNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred EEECCCcchHHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 223344 33444444 445 46777889887655 6889999999885
No 239
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=47.93 E-value=1.8e+02 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
|.+++..+.|-.--.+.+|-+-.- +|.+|.++-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G-hG~rv~vvQ 63 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG-HGLRVGVVQ 63 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc-CCCEEEEEE
Confidence 778888999998888888777777 888888875
No 240
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=47.21 E-value=32 Score=28.69 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=26.3
Q ss_pred CcHHHHHHHHhhhhhcCCCCcEEEecCCcchHH--H-H-HHH-h-CCceEEEec
Q 035495 105 PKTPLYNLLMDIKEKAGKPPICIITDTFFGWAV--D-V-AKS-A-GSTNVTFAT 152 (427)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~--~-~-A~~-l-giP~v~~~~ 152 (427)
+.+.+.+++++.+ ||+||+-..+.... . + .+. + ++|.+.+.+
T Consensus 77 ~~~~l~~~l~~~~------PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLREFQ------PDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhhcC------CCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3456777777766 99999997654333 1 1 122 3 577776654
No 241
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=46.91 E-value=29 Score=29.42 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=32.3
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|++--.++.|-+.- ..+.++|++ +|++|.++.++.....+..
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~-~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKE-AGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHH-CCCEEEEEECccHHHHHHH
Confidence 55555555555554 889999999 9999999999888877754
No 242
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.78 E-value=20 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch---HHHHHHHhCCceEEE
Q 035495 98 FFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW---AVDVAKSAGSTNVTF 150 (427)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~v~~ 150 (427)
+...+....+.++.+++++++ -++.+.|..+.. +..+|...|||++.=
T Consensus 129 mGs~~tsn~~aM~~~m~~Lk~-----r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 129 MGSRFTSNEDAMEKLMEALKE-----RGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred hhhhhcCcHHHHHHHHHHHHH-----CCeEEEcccccccchhhhhHhhcCCceeee
Confidence 334445667778888888885 899999976654 458899999999884
No 243
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=46.41 E-value=80 Score=32.27 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=50.0
Q ss_pred ecCCcccCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEec--------cccch
Q 035495 285 SFGSQNTISS-SQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVR--------NWAPQ 355 (427)
Q Consensus 285 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--------~~vpq 355 (427)
|-||.+.... ...+.+++.|++.+.+.++-+.... ...+-+.+.+ ..++... .++-.
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~---------~~~l~dal~~-----~~~i~~i~~~hE~~A~~~Ad 68 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGA---------ILPLYDALSQ-----STQIRHILARHEQGAGFIAQ 68 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcc---------cHHHHHHHhc-----cCCceEEEeccHHHHHHHHH
Confidence 4455555443 4467788888888888888776652 0011122211 1121111 11111
Q ss_pred HhhhcccCcceeeccCCh------hhHHHHHhcCCcEEecc
Q 035495 356 LEILSHKSTGAFLSHCGW------NSVLESLSQGLPTIGWP 390 (427)
Q Consensus 356 ~~ll~~~~v~~~I~HgG~------~s~~eal~~GvP~v~~P 390 (427)
..-..+....++++|.|- +++.+|...++|+|++-
T Consensus 69 gyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 69 GMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 111112233367777763 48999999999999984
No 244
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=46.41 E-value=85 Score=30.80 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=27.9
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|. ++||||++-.+++-| +|++.|++ -++-..+++.+.
T Consensus 1 ~~-~~~kvLviG~g~reh-----al~~~~~~-~~~~~~~~~~pg 37 (426)
T PRK13789 1 MQ-VKLKVLLIGSGGRES-----AIAFALRK-SNLLSELKVFPG 37 (426)
T ss_pred CC-CCcEEEEECCCHHHH-----HHHHHHHh-CCCCCEEEEECC
Confidence 44 358999999999888 68999999 786555555443
No 245
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=46.31 E-value=1.8e+02 Score=24.48 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=29.8
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIA 40 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~ 40 (427)
--|.+++..+.|-..-.+.+|-+.+. +|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~-~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG-HGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH-CCCeEEEE
Confidence 35788899999999999999999999 99999655
No 246
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=46.07 E-value=93 Score=23.92 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhHHHH
Q 035495 18 HLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIIN 97 (427)
Q Consensus 18 H~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (427)
+=.=++.+|+.|.+ .|++|. +++...+.+.+ .++.+..+.-. ...+..
T Consensus 11 dk~~~~~~a~~l~~-~G~~i~--aT~gTa~~L~~------------~gi~~~~v~~~---~~~~~~-------------- 58 (116)
T cd01423 11 SKPELLPTAQKLSK-LGYKLY--ATEGTADFLLE------------NGIPVTPVAWP---SEEPQN-------------- 58 (116)
T ss_pred cchhHHHHHHHHHH-CCCEEE--EccHHHHHHHH------------cCCCceEeeec---cCCCCC--------------
Confidence 44457899999999 999883 45555666666 44544433200 000000
Q ss_pred HHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCC---------cchHHHHHHHhCCceEE
Q 035495 98 FFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTF---------FGWAVDVAKSAGSTNVT 149 (427)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~---------~~~~~~~A~~lgiP~v~ 149 (427)
..+.+.+++++-+ +|+||.-.. .+.....|-.+|||++.
T Consensus 59 -------~~~~i~~~i~~~~------idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 -------DKPSLRELLAEGK------IDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -------CchhHHHHHHcCC------ceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 0144556666533 999998432 23456788999999974
No 247
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=45.97 E-value=42 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=28.8
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHHh--CCCcEEEEEcC
Q 035495 280 SVLHISFGSQNTISSSQMMELDIGLEA--SAKSFLWVITP 317 (427)
Q Consensus 280 ~vV~vs~Gs~~~~~~~~~~~~~~a~~~--~~~~~i~~~~~ 317 (427)
.+++++|||......+.+..+.+.+++ .+..+-|...+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 589999999987556678888888865 55677777654
No 248
>PRK04328 hypothetical protein; Provisional
Probab=45.72 E-value=2e+02 Score=25.70 Aligned_cols=43 Identities=7% Similarity=-0.209 Sum_probs=34.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v 49 (427)
--+++.-.|+.|-..-.+.++.+-++ +|+.+.|++.+...+.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV 66 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH
Confidence 34667778899999988888887777 89999999987655443
No 249
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=45.71 E-value=27 Score=30.24 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=31.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+-|++...|+.|-.-..-.||++|.+ ++|+|.-++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH-hhhhccccch
Confidence 34667779999999999999999999 9999987654
No 250
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.59 E-value=43 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=29.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||+|+-.++.| ..+|..|++ .||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 478888877776 457888999 9999999987433444443
No 251
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.17 E-value=51 Score=25.49 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=33.7
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
++..+.++..|-....-++..|.+ +|++|.++......+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~~~~ 41 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVPPEE 41 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCCHHH
Confidence 677888999999999999999999 9999999976544333
No 252
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.71 E-value=1.5e+02 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=22.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcC--CCEEEEEeC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRST--GFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~--Gh~Vt~~~~ 42 (427)
+||+++..+..+-+. ++.+++.+ . +++|.++.+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~-~~~~~~I~~vvs 36 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAA-GQLPAEIVAVIS 36 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHc-CCCCcEEEEEEe
Confidence 689999987755444 55556766 4 377887643
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=44.61 E-value=32 Score=29.04 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
+..++|+-.++.|-..=..++|+++.+ +|+.|.|++.+...+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceecccc
Confidence 457889999999999999999999999 999999998755444443
No 254
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=44.02 E-value=2.7e+02 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEE
Q 035495 107 TPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTF 150 (427)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 150 (427)
..+.+++++.+ ||++|... ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~~------pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYK------ADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcC------CCEEEEcc---chHHHHHhcCCCEEEc
Confidence 34455566555 99999873 4677889999999875
No 255
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.84 E-value=47 Score=29.05 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=35.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
-+++...|+.|-..-.+.++..-++ +|+.|.|++.+...+.+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHH
Confidence 4556667899999999999998888 8999999998876655443
No 256
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=43.71 E-value=55 Score=28.26 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=32.0
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
+++|.|-..|+.|-.+-||.=|++|++ +|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecCC
Confidence 578999999999999999999999999 9999999876654
No 257
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=43.49 E-value=41 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=34.1
Q ss_pred EEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 7 HIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 7 ~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
|++|+. -++.|-..-..++|..+++ +|++|-++++......
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCccH
Confidence 566665 7789999999999999999 9999999998876654
No 258
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.42 E-value=72 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=35.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
.+|++-+..+-+|-.=-.-++..|.+ .|++|..+.....
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~ 40 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSP 40 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCC
Confidence 58999999999999999999999999 9999999986544
No 259
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.28 E-value=41 Score=35.61 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=32.8
Q ss_pred CcEEEEeC--CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 5 NEHIGMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 5 ~~~il~~~--~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+.+++.++ .|+.|-..-...||..|+. .|++|.++-......
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~-~G~rVLlID~D~r~~ 573 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRG 573 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Confidence 34555554 5688999999999999999 999999997655433
No 260
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.25 E-value=41 Score=30.98 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=29.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC-CcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT-PLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~-~~~~~~v~~ 51 (427)
|||+++-.+..| ..+|..|++ .||+|+++.. +...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQ-AGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh-CCCeEEEEECChHHHHHHHH
Confidence 378888877776 567888999 9999999986 333333433
No 261
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=42.22 E-value=58 Score=29.88 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeecc
Q 035495 291 TISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSH 370 (427)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~H 370 (427)
..+.+..+.+.+|+...+.+.||.+..+.+ -..+.++++...+-+++. .||-.
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-------------------------a~rlL~~ld~~~~~~~pK--~~iGy 97 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG-------------------------ANRLLPYLDYDLIRANPK--IFVGY 97 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-------------------------HHHhhhhCCHHHHhhCCe--EEEEe
Confidence 345667888999999999999999987620 011225555555556666 67777
Q ss_pred CChhhHHHHHhc--CCcEEeccCc
Q 035495 371 CGWNSVLESLSQ--GLPTIGWPIA 392 (427)
Q Consensus 371 gG~~s~~eal~~--GvP~v~~P~~ 392 (427)
.-.-+++-+++. |++.+-=|+.
T Consensus 98 SDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 98 SDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred cHHHHHHHHHHHhcCceEEECccc
Confidence 777777777754 7777776654
No 262
>PLN02316 synthase/transferase
Probab=41.83 E-value=45 Score=36.53 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCcEEEEeC---CCC--ccCHHH-HHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 4 ENEHIGMLP---LMA--HGHLIP-FLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 4 ~~~~il~~~---~p~--~GH~~P-~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
++|||++++ .|. .|-+.- .-.|+++|++ +||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~-~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQD-LNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHH-cCCEEEEEecCCc
Confidence 468999988 231 344444 4689999999 9999999998543
No 263
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=41.79 E-value=40 Score=31.73 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=30.7
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
++||.|+-.+..|. .+|..|++ +||+|+++......+.+.+
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~-~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAA-AGADVTLIGRARIGDELRA 42 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHh-cCCcEEEEecHHHHHHHHh
Confidence 36899998888774 57899999 9999999986433333433
No 264
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.64 E-value=2.5e+02 Score=25.25 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=31.4
Q ss_pred CCcEEeccccc---hHhhhcccCcceeecc---CChh-hHHHHHhcCCcEEecc
Q 035495 344 KQGLLVRNWAP---QLEILSHKSTGAFLSH---CGWN-SVLESLSQGLPTIGWP 390 (427)
Q Consensus 344 ~~~v~~~~~vp---q~~ll~~~~v~~~I~H---gG~~-s~~eal~~GvP~v~~P 390 (427)
..++...++++ ...++..++ +++.- .|.| ++.||+++|+|+|...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~ 307 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASD 307 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECC
Confidence 35677788988 344677677 45554 3554 4699999999997655
No 265
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=41.48 E-value=2.2e+02 Score=27.96 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
+||++|... -+..+|+++|||.+.+.
T Consensus 355 ~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 355 EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 399999884 36778999999999974
No 266
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.38 E-value=33 Score=33.04 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=35.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
=|++---|+.|--.=+|+++..|++ +| .|.|++.++....+.
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHH
Confidence 3566668899999999999999999 99 999999988766554
No 267
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.18 E-value=74 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+++++|.|+-.+..|. ++|+.|.+ +||+|++....
T Consensus 2 ~~~m~I~iiG~G~~G~-----~lA~~l~~-~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGAGAWGS-----TLAGLASA-NGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECccHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 4678999998887774 78999999 99999988754
No 268
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.68 E-value=40 Score=28.45 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=32.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||++.-.++.| ..-...+.+.|++ +|++|.++.++.....+..
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~-~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTK-LGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHH-CCCEEEEEEChHHHhhccH
Confidence 56666666554 4456699999999 9999999998877666553
No 269
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.38 E-value=48 Score=29.90 Aligned_cols=30 Identities=7% Similarity=-0.166 Sum_probs=23.4
Q ss_pred CcEEEecCCcc------hHHHHHHHhCCceEEEecc
Q 035495 124 PICIITDTFFG------WAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 124 ~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (427)
||+|++-..+. -+..+|+.+|+|++++...
T Consensus 113 ~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 99999753332 3679999999999998654
No 270
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=40.22 E-value=56 Score=27.63 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHR 31 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~ 31 (427)
=.++-.++.||.-=|++|-+.|.+
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~ 63 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQD 63 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHh
Confidence 345567899999999999999987
No 271
>PLN02939 transferase, transferring glycosyl groups
Probab=40.17 E-value=49 Score=35.76 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=34.4
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEeccCc
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~P~~ 392 (427)
..+|.+.++.+.. .+++.++ +||.- =| ..+.+||+++|+|.|+....
T Consensus 836 ~drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vG 889 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTG 889 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCC
Confidence 4568877888764 4788888 57753 22 35899999999999987653
No 272
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.08 E-value=46 Score=32.18 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=36.7
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
++||++.-.++.|= .-...+.+.|.+ .|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~-~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR-QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh-CCCEEEEEECHhHHHHHHH
Confidence 46888877776655 448999999999 9999999999888777765
No 273
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=39.95 E-value=1.3e+02 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=27.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++++...- =.-++.+|+.|.+ .|+++. ++......+.+
T Consensus 5 ~~aLISVsD----K~~iv~lAk~L~~-lGfeI~--AT~GTak~L~e 43 (513)
T PRK00881 5 KRALISVSD----KTGIVEFAKALVE-LGVEIL--STGGTAKLLAE 43 (513)
T ss_pred CEEEEEEeC----cccHHHHHHHHHH-CCCEEE--EcchHHHHHHH
Confidence 344444443 3447899999999 999983 55667777887
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=39.64 E-value=72 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
+..+|.+.-.|+.|-=.-.=+|.++|.+ +||+|.++.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECC
Confidence 4457778889999999999999999999 999999998543
No 275
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.04 E-value=56 Score=33.17 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=29.7
Q ss_pred CcEEEEeCC-------CCccCHHHHH---HHHHHHHhcCCCEEEEEeCCc
Q 035495 5 NEHIGMLPL-------MAHGHLIPFL---ALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 5 ~~~il~~~~-------p~~GH~~P~l---~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
+.++++.+. |-.||+.+++ .+|+-++. +||+|.|+|...
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl-~G~~v~fvtGtD 52 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRL-RGYEVFFLTGTD 52 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCeEEEEeccC
Confidence 356676652 3569999877 57888888 999999999543
No 276
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.76 E-value=1.6e+02 Score=26.47 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCC-CEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhhHHHHHH
Q 035495 21 PFLALAKQIHRSTG-FKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLDLIINFF 99 (427)
Q Consensus 21 P~l~La~~L~~~~G-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (427)
-+-..++.|.+ .+ .+|-+.+.....+.+.... ..+ ..+-+.-+|.+...-+++.. .+.
T Consensus 117 ~~~eA~~~l~~-~~~~~iflttGsk~L~~f~~~~--~~~-----~r~~~RvLp~~~~~~g~~~~-------------~ii 175 (249)
T PF02571_consen 117 SYEEAAELLKE-LGGGRIFLTTGSKNLPPFVPAP--LPG-----ERLFARVLPTPESALGFPPK-------------NII 175 (249)
T ss_pred CHHHHHHHHhh-cCCCCEEEeCchhhHHHHhhcc--cCC-----CEEEEEECCCccccCCCChh-------------hEE
Confidence 34567777777 67 7777777766666554311 111 44555555644221111110 111
Q ss_pred HHh-cCCcHHHHHHHHhhhhhcCCCCcEEEecCC-cc---hHHHHHHHhCCceEEEe
Q 035495 100 TSS-QSPKTPLYNLLMDIKEKAGKPPICIITDTF-FG---WAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 100 ~~~-~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~-~~---~~~~~A~~lgiP~v~~~ 151 (427)
..- ....+.-.++++++. .|+||+=-. .. .=..+|+.+|||++.+-
T Consensus 176 a~~GPfs~e~n~al~~~~~------i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 176 AMQGPFSKELNRALFRQYG------IDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred EEeCCCCHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 111 233445567888877 999997532 12 22488999999999973
No 277
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.71 E-value=63 Score=28.36 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|...+++.++++.. .|. =-..++++|.+ +|++|.++.-.
T Consensus 1 ~~~~~~k~vlItG~-sg~--iG~~la~~l~~-~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALITGA-SSG--IGKATALAFAK-AGWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEeCC-Cch--HHHHHHHHHHH-CCCEEEEEeCC
Confidence 66566666666643 343 34678999999 99999998743
No 278
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=38.65 E-value=1.1e+02 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.1
Q ss_pred cceeeccCCh------hhHHHHHhcCCcEEecc
Q 035495 364 TGAFLSHCGW------NSVLESLSQGLPTIGWP 390 (427)
Q Consensus 364 v~~~I~HgG~------~s~~eal~~GvP~v~~P 390 (427)
..++++|+|- +++.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3467888774 48899999999999986
No 279
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.49 E-value=3.1e+02 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred CcEEEecCCcchHHHHHHHhCCceEEE
Q 035495 124 PICIITDTFFGWAVDVAKSAGSTNVTF 150 (427)
Q Consensus 124 ~D~vI~D~~~~~~~~~A~~lgiP~v~~ 150 (427)
||++|.. .....+|+++|||++..
T Consensus 394 pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 394 ADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CCEEEec---CchhhhhhhcCCCEEEc
Confidence 9999997 45779999999999843
No 280
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.48 E-value=1.1e+02 Score=26.81 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCc-chHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccchhh
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANTPL-NIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLSLD 93 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (427)
+..|+...+.++..++. +|=.+.|+++-. +.+.|+......-+ +-+.-..++ ++-.+ ..
T Consensus 90 T~~~Lr~A~~fVa~vA~-r~GiILFv~tn~~~~~~ve~aA~r~~g-----y~~~~~w~~------G~lTN---~~----- 149 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAH-RGGIILFVGTNNGFKDLVERAARRAGG-----YSHNRKWLG------GLLTN---AR----- 149 (251)
T ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEecCcchHHHHHHHHHHhcC-----ceeeeeecc------ceeec---ch-----
Confidence 56788889999999999 999999998644 55666664321111 111111111 11111 10
Q ss_pred HHHHHHHHhc---CCcHHHHHHHHhhhhhcCCCCcEEEe-cCCcc-hHHHHHHHhCCceEEEecch
Q 035495 94 LIINFFTSSQ---SPKTPLYNLLMDIKEKAGKPPICIIT-DTFFG-WAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 94 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~D~vI~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 154 (427)
.+..... ...++...++.... +|+||+ |..-. .++.-|.+++||.|.+.-+.
T Consensus 150 ---~l~g~~~~~~~~~pd~~~f~~t~~------~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 150 ---ELFGALVRKFLSLPDALCFLPTLT------PDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred ---hhcccccccccCCCcceeecccCC------cceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 1111111 11233333444333 687764 65444 57888999999999986553
No 281
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=38.43 E-value=2.1e+02 Score=25.22 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=23.6
Q ss_pred CcEEEEeCCCCc-cCHHH---HHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 5 NEHIGMLPLMAH-GHLIP---FLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 5 ~~~il~~~~p~~-GH~~P---~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
+..|+|.+..+. .-..| +..|++.|.+ +|..|.++..+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-~~~~vvl~g~~~~ 148 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE-RGYRVVLLGGPEE 148 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC-CT-EEEE--SSHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh-hCceEEEEccchH
Confidence 456777765544 22223 5899999999 9988988887766
No 282
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.15 E-value=38 Score=32.71 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.8
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
-.||+.|+..|.+ |++ +||+|+++..
T Consensus 47 HlGhlv~l~kL~~-fQ~-aGh~~ivLig 72 (401)
T COG0162 47 HLGHLVPLMKLRR-FQD-AGHKPIVLIG 72 (401)
T ss_pred chhhHHHHHHHHH-HHH-CCCeEEEEec
Confidence 4599999999977 888 8999999975
No 283
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.92 E-value=61 Score=27.21 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHH-HhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCC--------CCCCCC----
Q 035495 16 HGHLIPFLALAKQI-HRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSS--------DHGLPP---- 82 (427)
Q Consensus 16 ~GH~~P~l~La~~L-~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~---- 82 (427)
.+.+.=.+..|++| .+ .|.+|.+.-.. ....+.+. .++..+.++.... ......
T Consensus 16 ~~~~e~~v~~a~~~~~~-~g~dViIsRG~-ta~~lr~~-----------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iav 82 (176)
T PF06506_consen 16 EASLEEAVEEARQLLES-EGADVIISRGG-TAELLRKH-----------VSIPVVEIPISGFDILRALAKAKKYGPKIAV 82 (176)
T ss_dssp E--HHHHHHHHHHHHTT-TT-SEEEEEHH-HHHHHHCC------------SS-EEEE---HHHHHHHHHHCCCCTSEEEE
T ss_pred EecHHHHHHHHHHhhHh-cCCeEEEECCH-HHHHHHHh-----------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEE
Confidence 35667778899999 77 89999887653 33344442 2244554443210 000000
Q ss_pred -CCCCCccchhhHHHHHHH-Hh----cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecchHH
Q 035495 83 -NTENTENLSLDLIINFFT-SS----QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGGAY 156 (427)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 156 (427)
++.+... ....+..++. .+ -...+.++..+++.+. .+.|+||.+.. ...+|+++|+|++.+.+..-+
T Consensus 83 v~~~~~~~-~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 83 VGYPNIIP-GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp EEESS-SC-CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred EecccccH-HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 0000000 0111222221 11 2446677888887764 45999999963 689999999999998775433
No 284
>PLN02240 UDP-glucose 4-epimerase
Probab=37.92 E-value=55 Score=30.82 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=26.2
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
|+..+++|+++ ++.|.+ -..|+++|.+ +||+|+.+..
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~-~g~~V~~~~~ 37 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLL-AGYKVVVIDN 37 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHH-CCCEEEEEeC
Confidence 56555677764 455555 3467899999 9999999863
No 285
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=37.72 E-value=41 Score=27.15 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 24 ALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 24 ~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
-+|..|++ .||+|++++.....+.+.+
T Consensus 12 ~~a~~L~~-~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 12 LYAARLAQ-AGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHH-TTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHH-CCCceEEEEccccHHhhhh
Confidence 47899999 9999999998764444555
No 286
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=37.58 E-value=46 Score=29.36 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 18 HLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 18 H~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|+.-|.+.|++|.+ +||+|.++...
T Consensus 47 ~~saMRhfa~~L~~-~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRA-KGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHH-TT--EEEE-TT
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 56778999999999 99999999976
No 287
>PRK12342 hypothetical protein; Provisional
Probab=37.55 E-value=64 Score=29.06 Aligned_cols=30 Identities=3% Similarity=-0.159 Sum_probs=23.4
Q ss_pred CcEEEecCCcc------hHHHHHHHhCCceEEEecc
Q 035495 124 PICIITDTFFG------WAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 124 ~D~vI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (427)
||+|++--.+. -+..+|+.+|+|++.+...
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 99999753332 2679999999999997643
No 288
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=37.19 E-value=2.4e+02 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=31.0
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCC-CEEEEEeCC-cchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTG-FKITIANTP-LNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~G-h~Vt~~~~~-~~~~~v~~ 51 (427)
|++|+++-.+..|+ .+|+-|++ +| ++|+++.-. ...+.+..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~-~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQ-NGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHh-CCCceEEEEeCCHHHHHHHHh
Confidence 35888888877665 57888999 89 999999854 45566655
No 289
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=37.18 E-value=1.2e+02 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.9
Q ss_pred cceeeccCC------hhhHHHHHhcCCcEEeccC
Q 035495 364 TGAFLSHCG------WNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 364 v~~~I~HgG------~~s~~eal~~GvP~v~~P~ 391 (427)
..++++|+| .+.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 336788866 4588999999999999853
No 290
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.53 E-value=59 Score=30.62 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=37.2
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
...++|+-.++.|=..=+.++|++|.+ +|+.|.|++.......+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHHHHHHHH
Confidence 356888888899999999999999999 999999998765544443
No 291
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=36.48 E-value=1.4e+02 Score=26.74 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=24.6
Q ss_pred cccchhhHHHHHhhhceeEEEecCCCcc-ccccc
Q 035495 392 AAEQTYNSKMLVEEMGVAVEMTRGVQST-IVGHE 424 (427)
Q Consensus 392 ~~DQ~~na~~v~~~lG~G~~l~~~~~~~-~~~~~ 424 (427)
-+.+..|...+++ +++.+.+.++..++ -+.|.
T Consensus 182 Pfs~~~n~all~q-~~id~vItK~SG~~Gg~~~K 214 (257)
T COG2099 182 PFSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEK 214 (257)
T ss_pred CcChHHHHHHHHH-hCCCEEEEccCCcccCcHHH
Confidence 3678899999999 59999999976444 44443
No 292
>PRK07206 hypothetical protein; Provisional
Probab=36.01 E-value=1.6e+02 Score=28.53 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=24.1
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
.+|+++-.... ...+++++++ +|+++.+++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKK-RGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHH-cCCeEEEEEcC
Confidence 46777775433 3468999999 99999888754
No 293
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=35.99 E-value=1.6e+02 Score=26.92 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 23 LALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 23 l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
..+|..+++ +|++|.+++.......
T Consensus 3 ~a~a~~~a~-~g~~vllv~~Dp~~~l 27 (284)
T TIGR00345 3 CATAIRLAE-QGKKVLLVSTDPAHSL 27 (284)
T ss_pred HHHHHHHHH-CCCeEEEEECCCCCCH
Confidence 468889999 9999999998766543
No 294
>PRK06849 hypothetical protein; Provisional
Probab=35.76 E-value=76 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
++++|+++...+ .-.+.+|+.|.+ +||+|.++.....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~-~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHN-AGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 457788875332 258999999999 9999999977543
No 295
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=35.55 E-value=1.6e+02 Score=29.45 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcC
Q 035495 21 PFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELP 72 (427)
Q Consensus 21 P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~ 72 (427)
-++.+|+.|.+ .|+++. ++......+++ .|+.+..+.
T Consensus 12 ~iv~lAk~L~~-lGfeIi--ATgGTak~L~e------------~GI~v~~Vs 48 (511)
T TIGR00355 12 GIVEFAQGLVE-RGVELL--STGGTAKLLAE------------AGVPVTEVS 48 (511)
T ss_pred cHHHHHHHHHH-CCCEEE--EechHHHHHHH------------CCCeEEEee
Confidence 36789999999 999983 56666777887 556666554
No 296
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.38 E-value=70 Score=29.47 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=34.7
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
|+|+|+-=++.|-..-...||.+|++ +|++|.++-....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 36899999999999999999999999 9999999876544
No 297
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=35.21 E-value=1.2e+02 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
++|.++-.+++| .+||+.|++ .||+|++-...+
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~-ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLAR-NGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHh-cCCeeEEEecCH
Confidence 589999999998 579999999 999999998643
No 298
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.16 E-value=96 Score=25.06 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 035495 278 PASVLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITP 317 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 317 (427)
...+|++++||-.....+.++++++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4568999999987777888888888874 46788776554
No 299
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.97 E-value=67 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.5
Q ss_pred cCHHH-HHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 17 GHLIP-FLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 17 GH~~P-~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
||... ...+.++|++.+||+|.++.++..++.+..
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 77766 889999998416999999999887765554
No 300
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=34.92 E-value=70 Score=30.41 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.1
Q ss_pred ccCcceeeccCChhh---HHHHHhcCCcEEec
Q 035495 361 HKSTGAFLSHCGWNS---VLESLSQGLPTIGW 389 (427)
Q Consensus 361 ~~~v~~~I~HgG~~s---~~eal~~GvP~v~~ 389 (427)
+|+ ++|++||.=| +..|...|+|+++.
T Consensus 91 kPd--vvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPD--VIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCC--EEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 356 8999999986 99999999999873
No 301
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=34.86 E-value=71 Score=31.09 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.3
Q ss_pred EEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 035495 7 HIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIA 40 (427)
Q Consensus 7 ~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~ 40 (427)
+|++-. ..+.|-+.-.+.|.++|++ ||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh-cCCccccc
Confidence 344444 4577999999999999999 99999654
No 302
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=34.77 E-value=68 Score=28.95 Aligned_cols=38 Identities=8% Similarity=-0.015 Sum_probs=32.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|.|.+..=++.|-..-...||.+|++ +|++|.++=...
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 36888888899999999999999999 999999985443
No 303
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.48 E-value=84 Score=25.90 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+..+|+++-.+..| .+.++.|.+ .||+|++++.+
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~-~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKD-TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHh-CCCEEEEEcCc
Confidence 34678887666544 788999999 99999999643
No 304
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=34.47 E-value=65 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=31.5
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcC--CCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRST--GFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~--Gh~Vt~~~~~~~~~~v~~ 51 (427)
|++--.++.+=+.=.+.|.+.|.+ + ||+|.++-++.....+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~-~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKR-EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHh-hcCCCeEEEEEChhHHhHHhh
Confidence 333333333333678999999999 8 999999999887777665
No 305
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=56 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=35.5
Q ss_pred CcEEE-EeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHH
Q 035495 5 NEHIG-MLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (427)
Q Consensus 5 ~~~il-~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~ 48 (427)
++.|+ |+-.-+.|-..-.-.||..+++ +|+.+-+++...++.-
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAG 143 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccc
Confidence 34444 5557789999999999999999 9999999998877643
No 306
>PRK00784 cobyric acid synthase; Provisional
Probab=34.43 E-value=3.3e+02 Score=27.23 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=29.3
Q ss_pred cEEEEeCC-CCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 6 EHIGMLPL-MAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~-p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
.+|++... ...|-..-...|++.|++ +|++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEecccc
Confidence 35666654 457999999999999999 9999988754
No 307
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=34.30 E-value=1.6e+02 Score=25.31 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccCChhhHH
Q 035495 298 MELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHCGWNSVL 377 (427)
Q Consensus 298 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~HgG~~s~~ 377 (427)
+++.+.+...+..+|...|.- +-|.+.|..+.. .+-+=+ ||+ +.=.++|..+..
T Consensus 69 ~~l~~~l~~~~~dlvvLAGyM-----------rIL~~~fl~~~~--grIlNI-----------HPS--LLP~f~G~h~~~ 122 (200)
T COG0299 69 RALVEALDEYGPDLVVLAGYM-----------RILGPEFLSRFE--GRILNI-----------HPS--LLPAFPGLHAHE 122 (200)
T ss_pred HHHHHHHHhcCCCEEEEcchH-----------HHcCHHHHHHhh--cceEec-----------Ccc--cccCCCCchHHH
Confidence 458888888888887777653 124555555444 221222 788 788899999999
Q ss_pred HHHhcCCcEEecc
Q 035495 378 ESLSQGLPTIGWP 390 (427)
Q Consensus 378 eal~~GvP~v~~P 390 (427)
+|+.+|+..-++-
T Consensus 123 ~A~~aG~k~sG~T 135 (200)
T COG0299 123 QALEAGVKVSGCT 135 (200)
T ss_pred HHHHcCCCccCcE
Confidence 9999999865544
No 308
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.27 E-value=77 Score=33.75 Aligned_cols=42 Identities=10% Similarity=-0.103 Sum_probs=33.1
Q ss_pred CcEEEEeC--CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 5 NEHIGMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 5 ~~~il~~~--~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+.|++.++ .|+.|-..-...||..|+. .|++|.++-......
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~-~g~rvLlID~D~~~~ 588 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIAS-GGKRALLIDADGRKA 588 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHh-CCCeEEEEeCCCCch
Confidence 34555444 6788999999999999999 999999997665443
No 309
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=34.25 E-value=1.2e+02 Score=28.93 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhH-----------HHHhccCCCcEEeccccch-
Q 035495 288 SQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGF-----------EERIKEIKQGLLVRNWAPQ- 355 (427)
Q Consensus 288 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~v~~~~~vpq- 355 (427)
|++......+..+++++++.+.++...+..+. ....+ ......+.-.+.+..|+||
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~------------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~ 255 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGR------------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQD 255 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCc------------cHHHHHHHhccccccCccccccCCeEEEECCCCCHH
Q ss_pred --HhhhcccCcceeeccCChhhHHHHHhcCCcEE
Q 035495 356 --LEILSHKSTGAFLSHCGWNSVLESLSQGLPTI 387 (427)
Q Consensus 356 --~~ll~~~~v~~~I~HgG~~s~~eal~~GvP~v 387 (427)
+.||-.|++ .||= |=-|+..|.-+|+|.|
T Consensus 256 ~yD~LLw~cD~-NfVR--GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 256 DYDRLLWACDF-NFVR--GEDSFVRAQWAGKPFV 286 (374)
T ss_pred HHHHHHHhCcc-ceEe--cchHHHHHHHhCCCce
No 310
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.19 E-value=68 Score=28.95 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=33.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|.|.+..=++.|...-...||..|++ +|++|.++=...
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~-~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 36888888999999999999999999 999999886543
No 311
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.07 E-value=97 Score=23.98 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=33.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
||++..-++.|-......|++.|++ +|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 4788889999999999999999999 999999998765
No 312
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=33.68 E-value=88 Score=29.11 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccC
Q 035495 292 ISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHC 371 (427)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~Hg 371 (427)
.+.+..+.+.+|+...+.+.||.+..+. .-.++.++++...+-+|+. .||-..
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-------------------------g~~rlL~~lD~~~i~~~PK--~fiGyS 102 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD-------------------------DSNELLPYLDYELIKKNPK--IFIGYS 102 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc-------------------------CHhhhhhhcCHHHHhhCCC--EEEecc
Confidence 3566788899999999999999988762 0111335555555556665 577777
Q ss_pred ChhhHHHHHh--cCCcEEeccCc
Q 035495 372 GWNSVLESLS--QGLPTIGWPIA 392 (427)
Q Consensus 372 G~~s~~eal~--~GvP~v~~P~~ 392 (427)
-..+++-+++ .|.+.+-=|+.
T Consensus 103 DiTaL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 103 DITALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHHHHHHHhcCCeEEECccc
Confidence 7777777763 36666666654
No 313
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.47 E-value=74 Score=30.87 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=37.4
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++||++.-.++.+ ..=...+.++|.+ .|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsia-a~k~~~lv~~L~~-~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGIA-AYKALELVRRLRK-AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHh-CCCEEEEEECHhHHHHHhH
Confidence 45688888777664 4477899999999 9999999999887777765
No 314
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=33.47 E-value=94 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=39.0
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
.--+++.-.|+.|...-.++++.+.++ +|..|.+++.+...+.+.+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE 68 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence 345677779999999999999999999 9999999998876655544
No 315
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.41 E-value=55 Score=30.74 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=28.8
Q ss_pred cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch----------HHHHHHHhCCceEEEe
Q 035495 103 QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW----------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~----------~~~~A~~lgiP~v~~~ 151 (427)
+.....+..+++.++ ||++|+-..+.. +..+.++++||.++-.
T Consensus 66 eea~~~i~~mv~~~~------pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 66 EEALKKILEMVKKLK------PDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHhcC------CCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 334455566666665 999999865443 1246678999999854
No 316
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=33.14 E-value=61 Score=27.60 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=36.4
Q ss_pred cEEEEeC---CCC-ccCHHH-HHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCC
Q 035495 6 EHIGMLP---LMA-HGHLIP-FLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPF 73 (427)
Q Consensus 6 ~~il~~~---~p~-~GH~~P-~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~ 73 (427)
.||.++- .|+ +|=+-- .-.|+..|++ +||+|++.+.....+.-.. .+.|++...++.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~~~~----------~y~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPYKEF----------EYNGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCCCCc----------ccCCeEEEEeCC
Confidence 3677765 343 455544 3478889999 9999999987544322111 126688887774
No 317
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=32.88 E-value=51 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 24 ALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 24 ~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
.+|..|++ .||+|++++-....+.+.+
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~ 31 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ 31 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH
Confidence 47888999 9999999987544445554
No 318
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.77 E-value=1.1e+02 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=27.0
Q ss_pred chHhhhcccCcceeeccCChhhHHHHHh----cCCcEEeccC
Q 035495 354 PQLEILSHKSTGAFLSHCGWNSVLESLS----QGLPTIGWPI 391 (427)
Q Consensus 354 pq~~ll~~~~v~~~I~HgG~~s~~eal~----~GvP~v~~P~ 391 (427)
++..+...++ ++|+=||-||+..|.. .++|++++-.
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 3344444566 8999999999998755 3789998764
No 319
>PLN02939 transferase, transferring glycosyl groups
Probab=32.41 E-value=2.7e+02 Score=30.40 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCcEEEEeCC---C--CccCHHH-HHHHHHHHHhcCCCEEEEEeCCc
Q 035495 3 SENEHIGMLPL---M--AHGHLIP-FLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 3 ~~~~~il~~~~---p--~~GH~~P-~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
+++|||+|++. | -.|-+-- .-.|.++|++ .||+|.++++-.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~-~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK-KGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 45799999873 2 1344433 4588999999 999999999754
No 320
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.16 E-value=4.3e+02 Score=25.70 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=24.8
Q ss_pred HHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEE
Q 035495 109 LYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTF 150 (427)
Q Consensus 109 ~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 150 (427)
+.+.++..+ ||++|... ....+|+++|||++..
T Consensus 348 ~~~~i~~~~------pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 348 LKKLLKEKK------ADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHhhcC------CCEEEECC---cchhhHHhcCCCEEEc
Confidence 345555555 99999995 3568899999999854
No 321
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.13 E-value=4.2e+02 Score=24.64 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=58.9
Q ss_pred CcEEEEeCCCCcc---C--HHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCC
Q 035495 5 NEHIGMLPLMAHG---H--LIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHG 79 (427)
Q Consensus 5 ~~~il~~~~p~~G---H--~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 79 (427)
+.-|+|.|..+.| + .--+..|++.|.+ +|.+|.+++++..++..+...... . -... .
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e~~~~~~i~~~~-------~-~~~~---------~ 235 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKDHPAGNEIEALL-------P-GELR---------N 235 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhhHHHHHHHHHhC-------C-cccc---------c
Confidence 3445565544333 1 2357799999998 899999998877766555432100 0 0000 0
Q ss_pred CCCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecc
Q 035495 80 LPPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (427)
+. . ......+..+++. -|++|+.- .+..++|..+|+|.+.++..
T Consensus 236 l~------g--------------~~sL~el~ali~~--------a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 236 LA------G--------------ETSLDEAVDLIAL--------AKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred CC------C--------------CCCHHHHHHHHHh--------CCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 00 0 0112223344442 78899653 46789999999999998654
No 322
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.09 E-value=2.7e+02 Score=26.68 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCC-------CEEEEEeCCc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTG-------FKITIANTPL 44 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~G-------h~Vt~~~~~~ 44 (427)
+++||.++-.+++| .+||..|.+ .| |+|++.....
T Consensus 10 ~~~ki~ViGaG~wG-----tAlA~~l~~-n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 10 GPLKVSVIGSGNWG-----SAISKVVGE-NTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHh-cCCcccCCCCeEEEEEecc
Confidence 46799999999998 578999998 87 8999998654
No 323
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=31.88 E-value=47 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 19 LIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 19 ~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
+.|++.+.-...- +||+++++.+..+.+.+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 5678888888888 9999999998877766554
No 324
>PRK05973 replicative DNA helicase; Provisional
Probab=31.71 E-value=1.1e+02 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=37.0
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
-+++...|+.|-..-.+.++.+.+. +|+.|.|++.+...+.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHH
Confidence 4667778999999999999999999 9999999998876544443
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=31.66 E-value=3.9e+02 Score=24.05 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=33.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
-+++.-.|+.|-..-.+.++.+.+. +|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCc
Confidence 3566668899999999999999988 99999999987533
No 326
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=31.59 E-value=40 Score=29.78 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCEEEEEe
Q 035495 23 LALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 23 l~La~~L~~~~Gh~Vt~~~ 41 (427)
.++|++|++ +|++|+++.
T Consensus 29 ~AIA~~la~-~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLS-AGHEVTLVT 46 (227)
T ss_pred HHHHHHHHH-CCCEEEEEc
Confidence 478999999 999999875
No 327
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.54 E-value=62 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCEEEEEeC
Q 035495 23 LALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 23 l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+..|..|++ +|++|+++=.
T Consensus 9 l~aA~~L~~-~g~~v~v~E~ 27 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEES
T ss_pred HHHHHHHHH-CCCcEEEEec
Confidence 678999999 9999999853
No 328
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=31.49 E-value=39 Score=30.22 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCc
Q 035495 22 FLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 22 ~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
.-.|+++|++ +||+|+++++-.
T Consensus 22 ~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHh-cCCeEEEEEccc
Confidence 4578999999 999999998754
No 329
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.44 E-value=96 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=24.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|++.++-.+-.| -.||+.|.. .||+|++.+...
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~-ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAK-AGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHh-CCCeEEEecCCC
Confidence 456665555444 578999999 999999997543
No 330
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=30.98 E-value=6 Score=20.89 Aligned_cols=17 Identities=41% Similarity=0.739 Sum_probs=13.4
Q ss_pred ChhhHHHHHhcCCcEEe
Q 035495 372 GWNSVLESLSQGLPTIG 388 (427)
Q Consensus 372 G~~s~~eal~~GvP~v~ 388 (427)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67889999999988664
No 331
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.64 E-value=44 Score=30.33 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred eeeccCChhhHHHHHh------cCCcEEeccC
Q 035495 366 AFLSHCGWNSVLESLS------QGLPTIGWPI 391 (427)
Q Consensus 366 ~~I~HgG~~s~~eal~------~GvP~v~~P~ 391 (427)
++|+-||-||+..|+. .++|++++-.
T Consensus 38 lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 38 IVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 8999999999999986 5899999775
No 332
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=30.60 E-value=97 Score=26.41 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhcCCCCcEEEecCC-cchHHHHHHHhCCceEEEecchH
Q 035495 109 LYNLLMDIKEKAGKPPICIITDTF-FGWAVDVAKSAGSTNVTFATGGA 155 (427)
Q Consensus 109 ~~~~l~~~~~~~~~~~D~vI~D~~-~~~~~~~A~~lgiP~v~~~~~~~ 155 (427)
++.++++.. .+..++|...+ .++|..+|+++|+|.|.++|+..
T Consensus 49 l~~~i~~~~----~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 49 LEQLIEELK----PENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHhCC----CCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 345555544 11246665543 33677899999999999988643
No 333
>PLN00016 RNA-binding protein; Provisional
Probab=30.49 E-value=61 Score=31.05 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCCcEEEEeC--CCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 3 SENEHIGMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 3 ~~~~~il~~~--~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
..+++|+++. .++.|.+- ..|+++|.+ +||+|+.++-.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG--~~lv~~L~~-~G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIG--FYLAKELVK-AGHEVTLFTRG 89 (378)
T ss_pred cccceEEEEeccCCCceeEh--HHHHHHHHH-CCCEEEEEecC
Confidence 3456788772 23334332 567899999 99999998853
No 334
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=30.37 E-value=78 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=28.4
Q ss_pred cHHHHHHHHhhhhhcCCCCcEEEecCCcc-------hHHHHHHHhCCceEEEe
Q 035495 106 KTPLYNLLMDIKEKAGKPPICIITDTFFG-------WAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~D~vI~D~~~~-------~~~~~A~~lgiP~v~~~ 151 (427)
.+.+.++++.++ .++|+|++|-... .|..++-.+++|.|.+.
T Consensus 76 ~P~~l~~l~~l~----~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 76 LPCILEALEKLK----NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp HHHHHHHHHTSS----S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred HHHHHHHHHHhc----ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 466677777776 4599999994332 25678888899999985
No 335
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=30.32 E-value=1.9e+02 Score=24.49 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=22.9
Q ss_pred hhcccCcceeeccCChhhHHHHHh---------cCCcEEecc
Q 035495 358 ILSHKSTGAFLSHCGWNSVLESLS---------QGLPTIGWP 390 (427)
Q Consensus 358 ll~~~~v~~~I~HgG~~s~~eal~---------~GvP~v~~P 390 (427)
+...++. +++--||.||+-|.+. +.+|++++=
T Consensus 93 m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 93 MAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3334553 7777899999988743 499998874
No 336
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=30.08 E-value=78 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
+||+||.+. ....+|+++|||++.+.
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 499999886 47788999999998774
No 337
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=29.95 E-value=47 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.8
Q ss_pred eeeccCCh------hhHHHHHhcCCcEEecc
Q 035495 366 AFLSHCGW------NSVLESLSQGLPTIGWP 390 (427)
Q Consensus 366 ~~I~HgG~------~s~~eal~~GvP~v~~P 390 (427)
++++|+|- +++.||...++|+|++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 67777774 47889999999999985
No 338
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=29.88 E-value=1.6e+02 Score=24.46 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=21.1
Q ss_pred cceeeccCC------hhhHHHHHhcCCcEEeccC
Q 035495 364 TGAFLSHCG------WNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 364 v~~~I~HgG------~~s~~eal~~GvP~v~~P~ 391 (427)
..++++|.| .+++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 336777776 3588899999999999764
No 339
>PRK13768 GTPase; Provisional
Probab=29.82 E-value=90 Score=28.06 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=31.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
-+++...++.|-..-...++..|+. +|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCC
Confidence 4556667788999999999999999 999999997654
No 340
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.73 E-value=1.6e+02 Score=23.43 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=35.1
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+++||++.....-+|-.----++..|+. .|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~-~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYAD-LGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHh-CCcEEEECCCC
Confidence 4689999999999999999999999999 99999998854
No 341
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.73 E-value=90 Score=31.03 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=37.4
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~ 52 (427)
+.||++...++.+=+ =...|.+.|++ +||+|.++.++.....+...
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k-~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKE-RGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHh-CcCEEEEEECcCHHHHhhHH
Confidence 467888777765544 68899999999 99999999999888877763
No 342
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=29.68 E-value=80 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=25.9
Q ss_pred HhhhcccCcceeeccC---ChhhHHHH---HhcCCcEEeccCc
Q 035495 356 LEILSHKSTGAFLSHC---GWNSVLES---LSQGLPTIGWPIA 392 (427)
Q Consensus 356 ~~ll~~~~v~~~I~Hg---G~~s~~ea---l~~GvP~v~~P~~ 392 (427)
...+..|++-+++..+ +.||..|. .+.|+|++++-.-
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 3446667765666665 89999994 7789999987643
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=29.60 E-value=1.3e+02 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=33.7
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
-|+|+..++.|-..-...||..|++ .|++|.+++...++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r 112 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFR 112 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCC
Confidence 4556677799999999999999999 99999999987653
No 344
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.60 E-value=96 Score=27.88 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=33.7
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
.+|+|+.-++.|-..-...||..|++ +|++|.++=....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~-~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcCCC
Confidence 36888888899999999999999999 9999999965443
No 345
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=29.43 E-value=4.5e+02 Score=28.88 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEec
Q 035495 108 PLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 108 ~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (427)
.+.+++++.+ ||++|... -...+|+++|||++....
T Consensus 380 el~~~i~~~~------pDLlig~~---~~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 380 GLLRVMREKM------PDLIVAGG---KTKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHHHhcC------CCEEEecC---chhhHHHHcCCCeEEccC
Confidence 3455566655 99999864 357789999999997653
No 346
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=29.20 E-value=1e+02 Score=25.64 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc--hHHhhh
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN--IQYLQN 51 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~--~~~v~~ 51 (427)
..+|.++-++++||- -|.-|++ .|++|++..-+.. .+..++
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrD-SG~~V~Vglr~~s~s~~~A~~ 46 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRD-SGVNVIVGLREGSASWEKAKA 46 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHH-CC-EEEEEE-TTCHHHHHHHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHh-CCCCEEEEecCCCcCHHHHHH
Confidence 468999999999985 4778999 8999999886543 444555
No 347
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=29.05 E-value=2.5e+02 Score=22.96 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcc
Q 035495 282 LHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSH 361 (427)
Q Consensus 282 V~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~ 361 (427)
|-|=+||.+ +...++++...|++.+..+-..+.+.. ..|+.+. .++....- ..
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH-----------R~p~~l~-------------~~~~~~~~-~~ 55 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH-----------RTPERLL-------------EFVKEYEA-RG 55 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT-----------TSHHHHH-------------HHHHHTTT-TT
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc-----------CCHHHHH-------------HHHHHhcc-CC
Confidence 555566654 567788888888888877766665542 1344332 22211110 12
Q ss_pred cCcceeeccCCh----hhHHHHHhcCCcEEeccCcccch
Q 035495 362 KSTGAFLSHCGW----NSVLESLSQGLPTIGWPIAAEQT 396 (427)
Q Consensus 362 ~~v~~~I~HgG~----~s~~eal~~GvP~v~~P~~~DQ~ 396 (427)
++ +||.=.|. .++..++. -+|+|.+|....+.
T Consensus 56 ~~--viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~ 91 (150)
T PF00731_consen 56 AD--VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYL 91 (150)
T ss_dssp ES--EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTT
T ss_pred CE--EEEEECCCcccchhhheecc-CCCEEEeecCcccc
Confidence 33 56665553 35555555 78999999866543
No 348
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.02 E-value=82 Score=31.76 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=22.0
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
+||+|+.+. ....+|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 499999997 46677999999998875
No 349
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.01 E-value=1.9e+02 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred CcHHHHHHHHhhhhhcCCCCcEEEecCCcc-----hHHHHHHHhCCceEEEe
Q 035495 105 PKTPLYNLLMDIKEKAGKPPICIITDTFFG-----WAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~-----~~~~~A~~lgiP~v~~~ 151 (427)
..+.-..+++++. .|+||+=-..- .=..+|+.+|||+|.+-
T Consensus 184 s~~~n~all~q~~------id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 184 SEEDNKALLEQYR------IDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred ChHHHHHHHHHhC------CCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 3445567788777 99999764222 23589999999999984
No 350
>PRK08939 primosomal protein DnaI; Reviewed
Probab=29.01 E-value=92 Score=28.99 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=37.6
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
..+++...++.|=..=+.+||.+|.+ +|..|+|++.+.....+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK-KGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHHHHHHHHHH
Confidence 46888888999999999999999999 9999999987655544443
No 351
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=28.96 E-value=61 Score=28.21 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEecCCcch-------HHHHHHHhCCceEEEe
Q 035495 107 TPLYNLLMDIKEKAGKPPICIITDTFFGW-------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~D~vI~D~~~~~-------~~~~A~~lgiP~v~~~ 151 (427)
+.+.++++++. ..||+|++|-.... |..+.-.+++|+|.+.
T Consensus 81 p~l~~~~~~l~----~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 81 PPLLEALEKLK----TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHhCC----CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 34666666665 35999999954433 4466666789999874
No 352
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.95 E-value=1.8e+02 Score=26.65 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.5
Q ss_pred hHhhhcccCcceeeccCChh-----hHHHHHhcCCcEEeccCc
Q 035495 355 QLEILSHKSTGAFLSHCGWN-----SVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 355 q~~ll~~~~v~~~I~HgG~~-----s~~eal~~GvP~v~~P~~ 392 (427)
+...+...+|-++|+|.|.. .+..|-..|+|+|.+=-.
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 45556666676899999964 556667889999987544
No 353
>PRK13604 luxD acyl transferase; Provisional
Probab=28.91 E-value=1.1e+02 Score=28.39 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=28.8
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIA 40 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~ 40 (427)
+...++++++..++-.-+..+|+.|.+ +|+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~-~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSS-NGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHH-CCCEEEEe
Confidence 346777788888887779999999999 99988765
No 354
>PRK04940 hypothetical protein; Provisional
Probab=28.81 E-value=1.5e+02 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=25.0
Q ss_pred CcEEEecC-CcchHHHHHHHhCCceEEEecch
Q 035495 124 PICIITDT-FFGWAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 124 ~D~vI~D~-~~~~~~~~A~~lgiP~v~~~~~~ 154 (427)
+++||... -.++|..+|+++|+|.|.++|+.
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 67788664 44578899999999999998874
No 355
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.77 E-value=73 Score=26.28 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=23.8
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
|++|.|+-.+..| .++|+.|.+ +||+|+...
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~-~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAK-AGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHH-TTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHh-cCCeEEeec
Confidence 3588888887766 478999999 999999875
No 356
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.60 E-value=4.1e+02 Score=23.68 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCcc------hHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccch
Q 035495 19 LIPFLALAKQIHRSTG-FKITIANTPLN------IQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTENTENLS 91 (427)
Q Consensus 19 ~~P~l~La~~L~~~~G-h~Vt~~~~~~~------~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (427)
+.|..++..+|++ -| .+|.++|+... ++.+++ .|+++.....- +...+.+ ...
T Consensus 105 tt~~~A~~~AL~a-lg~~RIalvTPY~~~v~~~~~~~l~~------------~G~eV~~~~~~----~~~~~~~-ia~-- 164 (239)
T TIGR02990 105 VTPSSAAVDGLAA-LGVRRISLLTPYTPETSRPMAQYFAV------------RGFEIVNFTCL----GLTDDRE-MAR-- 164 (239)
T ss_pred eCHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHHh------------CCcEEeeeecc----CCCCCce-eee--
Confidence 4678889999998 78 68888886432 233444 66777654310 1111111 111
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHH----HHHHHhCCceEEEecchHH
Q 035495 92 LDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAV----DVAKSAGSTNVTFATGGAY 156 (427)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~----~~A~~lgiP~v~~~~~~~~ 156 (427)
...+.+.+.+++.. ..++|.|+.-....-.. .+=+.+|+|++..+.....
T Consensus 165 ------------i~p~~i~~~~~~~~---~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W 218 (239)
T TIGR02990 165 ------------ISPDCIVEAALAAF---DPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAW 218 (239)
T ss_pred ------------cCHHHHHHHHHHhc---CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHH
Confidence 11222334444432 23488877654334333 3445579999886655443
No 357
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=28.50 E-value=3.9e+02 Score=23.10 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.2
Q ss_pred EEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 8 IGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 8 il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
|.+.+ ....|-..-.+.|++.|++ +|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEEe
Confidence 44443 4567999999999999999 999998875
No 358
>PTZ00445 p36-lilke protein; Provisional
Probab=28.28 E-value=4.1e+02 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.3
Q ss_pred cCHHH-HHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 17 GHLIP-FLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 17 GH~~P-~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
+|+.| +..+.++|.+ .|-.|+++|.....
T Consensus 74 ~~~tpefk~~~~~l~~-~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 74 TSVTPDFKILGKRLKN-SNIKISVVTFSDKE 103 (219)
T ss_pred ccCCHHHHHHHHHHHH-CCCeEEEEEccchh
Confidence 45677 8899999999 99999999976553
No 359
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.13 E-value=91 Score=30.62 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
++|++|.+.. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 3999999974 6789999999998764
No 360
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=65 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=25.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+||+++-.+..| |.-|.+|++ +||+||++=.
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~-~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELAD-AGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHh-CCCceEEEec
Confidence 477877777655 788999999 9999999853
No 361
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=27.71 E-value=1.5e+02 Score=24.74 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhC
Q 035495 278 PASVLHISFGSQNTISSSQMMELDIGLEAS 307 (427)
Q Consensus 278 ~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~ 307 (427)
.+..+|+++||-.....+.++..++.+...
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 345699999998654556666666667663
No 362
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=27.67 E-value=59 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=29.6
Q ss_pred hhcccCcceeeccCChhhHHHHHh----cCCcEEeccCccc
Q 035495 358 ILSHKSTGAFLSHCGWNSVLESLS----QGLPTIGWPIAAE 394 (427)
Q Consensus 358 ll~~~~v~~~I~HgG~~s~~eal~----~GvP~v~~P~~~D 394 (427)
-|..-++..+|.=||.+|+.-|.. +++|+|++|-.-|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 355567778999999999877753 7999999997655
No 363
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.52 E-value=52 Score=29.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred eeeccCChhhHHHHHhc----CCcEEeccC
Q 035495 366 AFLSHCGWNSVLESLSQ----GLPTIGWPI 391 (427)
Q Consensus 366 ~~I~HgG~~s~~eal~~----GvP~v~~P~ 391 (427)
++|+-||-||+..|+.. ++|++++-.
T Consensus 28 lvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 28 VIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 89999999999988664 789998764
No 364
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.44 E-value=94 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=22.6
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEec
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (427)
+||+||.+. ....+|+++|||++.+..
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 499999986 477889999999988753
No 365
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=27.20 E-value=1.2e+02 Score=27.89 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=32.4
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
..|.|+.-++.|-..-...||.+|++ .|++|.++-...
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D~ 42 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCDP 42 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 45667778899999999999999999 999999995443
No 366
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.06 E-value=99 Score=30.32 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=21.8
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEec
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFAT 152 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (427)
+||++|.+. ....+|+++|+|++.+..
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 499999987 356678999999988743
No 367
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=26.87 E-value=3e+02 Score=21.98 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=41.7
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe--CCcchHHhhhhhcCCCCCCCCCCceeEEEcCCC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN--TPLNIQYLQNTISSANPNSPEKFNINLVELPFC 74 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~--~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (427)
++||+++.-.|+-.-++-++ .+|.. .|..-.+-. ...+..-+++ .||+..+.+++
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkK-ygvttvVRVCe~TYdt~~lek------------~GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKK-YGVTTVVRVCEPTYDTTPLEK------------EGITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHh-cCCeEEEEecccccCCchhhh------------cCceEeecccc
Confidence 46999999999998888665 68999 886533333 4445666777 88999999975
No 368
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.76 E-value=4.2e+02 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 20 IPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 20 ~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
.-+..|++.|.+ +|++|.+++.+...+..+.
T Consensus 140 ~~~~~l~~~l~~-~~~~ivl~g~~~e~~~~~~ 170 (279)
T cd03789 140 ERFAALADRLLA-RGARVVLTGGPAERELAEE 170 (279)
T ss_pred HHHHHHHHHHHH-CCCEEEEEechhhHHHHHH
Confidence 357899999999 8999999988776666555
No 369
>PLN02650 dihydroflavonol-4-reductase
Probab=26.72 E-value=1.3e+02 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
|++.+++|+++- +.|.+ -..|+++|.+ +||+|+.+.-
T Consensus 1 ~~~~~k~iLVTG--atGfI--Gs~l~~~L~~-~G~~V~~~~r 37 (351)
T PLN02650 1 MGSQKETVCVTG--ASGFI--GSWLVMRLLE-RGYTVRATVR 37 (351)
T ss_pred CCCCCCEEEEeC--CcHHH--HHHHHHHHHH-CCCEEEEEEc
Confidence 787788877664 33333 2457889999 9999998763
No 370
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.66 E-value=80 Score=30.93 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=21.9
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
+||++|.... ...+|+++|||+..+.
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3999999874 6778999999998764
No 371
>PRK07236 hypothetical protein; Provisional
Probab=26.58 E-value=80 Score=30.30 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
+++++|+++-.+-.| +.+|..|++ +|++|+++=
T Consensus 4 ~~~~~ViIVGaG~aG-----l~~A~~L~~-~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGG-----LFAALLLRR-AGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHh-CCCCEEEEe
Confidence 567899999877444 789999999 999999985
No 372
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=26.43 E-value=1.2e+02 Score=27.48 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=32.7
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
.+|+|.-=++.|-..-.+.||.+|++ +|++|.++=..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~-~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE-SGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeC
Confidence 47888888899999999999999999 99999998543
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.40 E-value=1e+02 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=31.1
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
|+|+-..+.|-.--...||..++. +|.+|.+++...++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL-KGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhh-ccccceeecCCCCC
Confidence 455566688999999999999999 99999999987765
No 374
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.11 E-value=1.1e+02 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCC
Q 035495 21 PFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 21 P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
--+.+|..|++ +|.+||++...
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHHHH-hCcEEEEEecc
Confidence 35789999999 99999999853
No 375
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.06 E-value=97 Score=30.39 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
+||+||.+.. ...+|+++|+|++.+.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 4999999974 5788999999998764
No 376
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.99 E-value=1.9e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=36.4
Q ss_pred EEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 8 IGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|.|.+ -++.|-.--.+.||.+|++ +|-.|+++=..++++...-
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHHHH
Confidence 44444 6789999999999999999 9999999999888766544
No 377
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=25.75 E-value=1.7e+02 Score=26.19 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=35.8
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCcchHHhhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQN 51 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~-Gh~Vt~~~~~~~~~~v~~ 51 (427)
+++...|+.|-..-++.+|..++. + |+.|.|++.+...+.+..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~-~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAAL-NGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-TTSSEEEEEESSS-HHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHH
Confidence 566678999999999999999998 7 699999999877655444
No 378
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.71 E-value=1e+02 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.0
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+|||.|+-.+..| ..+|..|++ +||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~-~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAAS-KGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHH-CCCeEEEEeCC
Confidence 5689999888887 468999999 99999999864
No 379
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.47 E-value=1.7e+02 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred EeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 10 MLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 10 ~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
++..+..--+.|..-++...++ .|++|+++.+
T Consensus 8 Il~SG~~dk~~~a~iias~A~A-~G~EV~VF~T 39 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAA-MGYEVTVFFT 39 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 4556778889999999999999 9999999876
No 380
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.46 E-value=90 Score=30.23 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=28.4
Q ss_pred cCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch----------HHHHHHHhCCceEEEe
Q 035495 103 QSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW----------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~----------~~~~A~~lgiP~v~~~ 151 (427)
+.....+.++++..+ ||++|+-..+.. +..+.+++|||.++-.
T Consensus 62 eea~~~i~~mv~k~~------pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDKE------PDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhcC------CCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 333445556666655 999999865443 1245677999999864
No 381
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.43 E-value=2.4e+02 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.9
Q ss_pred eeeccCC------hhhHHHHHhcCCcEEecc
Q 035495 366 AFLSHCG------WNSVLESLSQGLPTIGWP 390 (427)
Q Consensus 366 ~~I~HgG------~~s~~eal~~GvP~v~~P 390 (427)
++++|.| .++++||-..++|+|++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 5777777 458999999999999984
No 382
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=25.42 E-value=4.8e+02 Score=24.52 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=24.6
Q ss_pred CCcEEE-ecCC-cchHHHHHHHhCCceEEEecchH
Q 035495 123 PPICII-TDTF-FGWAVDVAKSAGSTNVTFATGGA 155 (427)
Q Consensus 123 ~~D~vI-~D~~-~~~~~~~A~~lgiP~v~~~~~~~ 155 (427)
.||+|| .|.. ...++.-|.++|||+|.+.-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 488776 5643 33688889999999999976543
No 383
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.42 E-value=90 Score=30.24 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=29.0
Q ss_pred hcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcch----------HHHHHHHhCCceEEEe
Q 035495 102 SQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGW----------AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~----------~~~~A~~lgiP~v~~~ 151 (427)
.+.....+.++++..+ ||++|+-..+.. +..+.+++|||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~~------pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGAN------PDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhcC------CCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3334455566666665 999999865443 1245677999999864
No 384
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=25.21 E-value=1.6e+02 Score=25.01 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=35.1
Q ss_pred cCcceeec-cCChhhHHHHHhcCCcEEeccC--c-----ccchhhHHHHHhhhceeEEE
Q 035495 362 KSTGAFLS-HCGWNSVLESLSQGLPTIGWPI--A-----AEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 362 ~~v~~~I~-HgG~~s~~eal~~GvP~v~~P~--~-----~DQ~~na~~v~~~lG~G~~l 412 (427)
++|.++|+ .+|..+..-|-.+|.|..++|. + .| ...+..+.+ +|.-+.+
T Consensus 36 a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d-~eL~~~l~e-~~~d~v~ 92 (206)
T KOG3076|consen 36 ADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYD-NELAEVLLE-LGTDLVC 92 (206)
T ss_pred ceEEEEEeccccchhhhHHHHCCCCEEEeccccccccccCc-HHHHHHHHH-hCCCEEE
Confidence 34445555 4788999999999999999998 2 34 555666666 4665544
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.13 E-value=1.8e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=34.3
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+++.-.++.|-......++..|++ +|.+|.++..+..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCh
Confidence 567778899999999999999999 999999999876654
No 386
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=25.02 E-value=1.6e+02 Score=29.00 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
..|+|+..++.|-..-...||..|.+ .|++|.+++...++.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRP 136 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCH
Confidence 34667778899999999999999999 999999999887654
No 387
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.90 E-value=2.9e+02 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=19.6
Q ss_pred eeeccCChhhHHHHHhc-----CCcEEe-ccC
Q 035495 366 AFLSHCGWNSVLESLSQ-----GLPTIG-WPI 391 (427)
Q Consensus 366 ~~I~HgG~~s~~eal~~-----GvP~v~-~P~ 391 (427)
++|.-||-||+.|++.. ..|.++ +|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 79999999999996542 355554 996
No 388
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=24.84 E-value=4.3e+02 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.4
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhc-CCCEEEEEeC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANT 42 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~-~Gh~Vt~~~~ 42 (427)
|+||++..+++.| +|+++|+++ +|++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 4899999998888 578888883 3999888754
No 389
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.74 E-value=97 Score=28.46 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|+.+..+|.++-.+..|. .+|..|+. +||+|+++....
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~-~G~~V~l~d~~~ 38 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCAR-AGVDVLVFETTE 38 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHh-CCCEEEEEECCH
Confidence 555556899998887774 67888999 999999997543
No 390
>PRK08181 transposase; Validated
Probab=24.68 E-value=1.1e+02 Score=27.89 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=34.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
..+++|+-.++.|=..=..++|.++.+ +|+.|.|++.....+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTTDLVQ 147 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeHHHHHH
Confidence 356888888899998889999999999 999999988644333
No 391
>PRK12377 putative replication protein; Provisional
Probab=24.64 E-value=1.2e+02 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=35.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
..++|.-.++.|=..=+.+||++|.+ .|+.|.|++.+.....+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHHHHHHHHH
Confidence 35788888899999999999999999 999999988755444443
No 392
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.60 E-value=1.8e+02 Score=20.63 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=28.1
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
+++...++.|-..-...||..|++ .|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC
Confidence 455666788888899999999999 999998886
No 393
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=24.48 E-value=71 Score=32.51 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=28.0
Q ss_pred chHhhhcccCcceeec---cCCh-hhHHHHHhcCCcEEeccCc
Q 035495 354 PQLEILSHKSTGAFLS---HCGW-NSVLESLSQGLPTIGWPIA 392 (427)
Q Consensus 354 pq~~ll~~~~v~~~I~---HgG~-~s~~eal~~GvP~v~~P~~ 392 (427)
+..+++.-|+ +||. +=|+ -++.||+++|+|+|..-..
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLS 507 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCc
Confidence 3667777788 4555 4454 5899999999999997753
No 394
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=24.47 E-value=1.8e+02 Score=24.86 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.2
Q ss_pred cEEE-EeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 6 EHIG-MLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 6 ~~il-~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+|++ |++ -++.|-..-...||..|++ +|++|.++-......
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~ 59 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNS 59 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCh
Confidence 4444 443 5677889999999999999 999999986654443
No 395
>PRK10490 sensor protein KdpD; Provisional
Probab=24.45 E-value=1.2e+02 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
++||.+=..|+.|-.+-||.-|++|++ +|++|.+..-+.+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~-~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRA-QGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHh-CCCcEEEEEeeCC
Confidence 579999999999999999999999999 9999988776554
No 396
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=24.20 E-value=71 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCccCHHHHH---HHHHHHHhcCCCEEEEEeCC
Q 035495 14 MAHGHLIPFL---ALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 14 p~~GH~~P~l---~La~~L~~~~Gh~Vt~~~~~ 43 (427)
|-.||+.|++ .+|+-++. +||+|.|++..
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~-~G~~v~~~tGt 45 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRL-RGHDVLFVTGT 45 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHhh-cccceeeEEec
Confidence 4569999877 67888888 99999999853
No 397
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.15 E-value=4.2e+02 Score=22.61 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=41.9
Q ss_pred cE-EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC---CcchHHhhhhhcCC-CCCCCCCCceeEEEcC
Q 035495 6 EH-IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT---PLNIQYLQNTISSA-NPNSPEKFNINLVELP 72 (427)
Q Consensus 6 ~~-il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~---~~~~~~v~~~~~~~-~~~~~~~~~i~~~~~~ 72 (427)
.| |+|+..+..-|---+..+++.|++ .|-+|.+++- ..+.+.++...... .+ .+-+|+.+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~-----~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGEIDDNTEKLTAFIDAVNGK-----DGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCCCCCCHHHHHHHHHHhcCC-----CCceEEEeC
Confidence 35 778888878887778899999999 9999998874 33455555443321 11 456777666
No 398
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.09 E-value=2.4e+02 Score=21.71 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=30.0
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
..|+...++.+++.+++ +|..|..+|.....+..+.
T Consensus 62 ~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 62 YSGETRELIELLRFAKE-RGAPVILITSNSESPLARL 97 (131)
T ss_dssp SSSTTHHHHHHHHHHHH-TTSEEEEEESSTTSHHHHH
T ss_pred ccccchhhhhhhHHHHh-cCCeEEEEeCCCCCchhhh
Confidence 67788999999999999 9999999987666555554
No 399
>PRK07952 DNA replication protein DnaC; Validated
Probab=24.08 E-value=1.2e+02 Score=27.09 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=34.3
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v 49 (427)
.++|...++.|-..=..+||.+|.. +|+.|.|++.......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITVADIMSAM 142 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEHHHHHHHH
Confidence 4777778899999999999999999 99999999764444333
No 400
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.07 E-value=2.6e+02 Score=23.29 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=22.8
Q ss_pred hcccCcceeeccCChh-----hHHHHHhcCCcEEeccC
Q 035495 359 LSHKSTGAFLSHCGWN-----SVLESLSQGLPTIGWPI 391 (427)
Q Consensus 359 l~~~~v~~~I~HgG~~-----s~~eal~~GvP~v~~P~ 391 (427)
+...++-++|+++|.+ .+..|-..|+|+|.+=-
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 3444555899999964 44555678999988753
No 401
>PRK13059 putative lipid kinase; Reviewed
Probab=24.05 E-value=3.5e+02 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.168 Sum_probs=21.6
Q ss_pred eeeccCChhhHHHHH---h---cCCcEEeccC
Q 035495 366 AFLSHCGWNSVLESL---S---QGLPTIGWPI 391 (427)
Q Consensus 366 ~~I~HgG~~s~~eal---~---~GvP~v~~P~ 391 (427)
++|.-||-||+.|++ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 799999999988874 3 3589999996
No 402
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.01 E-value=2e+02 Score=23.88 Aligned_cols=42 Identities=10% Similarity=-0.213 Sum_probs=35.4
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhh
Q 035495 8 IGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (427)
Q Consensus 8 il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~ 50 (427)
+++.-.|+.|=..-.+.++.+.++ .|..|.|++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHH
Confidence 567778899999999999999999 999999999877655443
No 403
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=23.96 E-value=1.4e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred EEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 9 GMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 9 l~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+++..+..++-.-+..+++.|++ +|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~-~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAE-QGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHH-TTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-CCCEEEEEec
Confidence 45556666667779999999999 9999888743
No 404
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.91 E-value=1.6e+02 Score=24.50 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=31.6
Q ss_pred cEEE-EeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIG-MLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il-~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
++|+ |+-+-..|-.-=+-+|..+|.+ +|++|..+-+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh-CCcEEEEEEecCC
Confidence 3444 6667788999999999999999 9999999976443
No 405
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.80 E-value=1.2e+02 Score=29.76 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.7
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
++|++|... ....+|+++|||++.+.
T Consensus 373 ~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 373 GADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred CCCEEEECc---chHHHHHHcCCCEEEec
Confidence 399999886 36889999999999863
No 406
>PLN02891 IMP cyclohydrolase
Probab=23.74 E-value=2.9e+02 Score=27.85 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC---CCccchhhHHHH
Q 035495 21 PFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGLPPNTE---NTENLSLDLIIN 97 (427)
Q Consensus 21 P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 97 (427)
-+..+|+.|.+ .|.++ +++......+.. .|+.+..+. +.-++|+-.. .|- +|. + .
T Consensus 34 gi~~fAk~L~~-~gveI--iSTgGTak~L~e------------~Gi~v~~Vs---d~TgfPEiL~GRVKTL-HPk--I-h 91 (547)
T PLN02891 34 DLALLANGLQE-LGYTI--VSTGGTASALEA------------AGVSVTKVE---ELTNFPEMLDGRVKTL-HPA--V-H 91 (547)
T ss_pred CHHHHHHHHHH-CCCEE--EEcchHHHHHHH------------cCCceeeHH---hccCCchhhCCccccc-Cch--h-h
Confidence 36889999999 88665 566666777777 556766554 2235554322 111 111 0 1
Q ss_pred HHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCC
Q 035495 98 FFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTF 132 (427)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~ 132 (427)
-.-...+..+.-.+.+++.. -.+.|+||++..
T Consensus 92 gGILa~r~~~~h~~~l~~~~---I~~IDlVvVNLY 123 (547)
T PLN02891 92 GGILARRDQEHHMEALNEHG---IGTIDVVVVNLY 123 (547)
T ss_pred hhhhcCCCCHHHHHHHHHcC---CCceeeEEEecc
Confidence 11111333344444444443 135799998853
No 407
>PRK06526 transposase; Provisional
Probab=23.72 E-value=71 Score=28.80 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
..+++|+-.++.|=..=..+|+.++.+ +|+.|.|.+.....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~~l~ 138 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAAQWV 138 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHHHHH
Confidence 457888889999999999999999999 99999987664433
No 408
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=23.66 E-value=4.8e+02 Score=24.44 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=59.8
Q ss_pred cEEEEeCCCCc-c----CHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhhhhcCCCCCCCCCCceeEEEcCCCCCCCCC
Q 035495 6 EHIGMLPLMAH-G----HLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISSANPNSPEKFNINLVELPFCSSDHGL 80 (427)
Q Consensus 6 ~~il~~~~p~~-G----H~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 80 (427)
..|+|.|.-+. . -.--+..|++.|.+ +|.+|.+..+....+..++.... +... . .+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~-~~~~Vvl~g~~~e~e~~~~i~~~----------~~~~--~------~l 236 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA-KGYQVVLFGGPDEEERAEEIAKG----------LPNA--V------IL 236 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH-CCCEEEEecChHHHHHHHHHHHh----------cCCc--c------cc
Confidence 56777776222 1 23457899999999 99999999888666665553320 1100 0 00
Q ss_pred CCCCCCCccchhhHHHHHHHHhcCCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecch
Q 035495 81 PPNTENTENLSLDLIINFFTSSQSPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (427)
. . ......+..+++. .|++|+-- .+..++|..+|.|+|.++...
T Consensus 237 ~----~----------------k~sL~e~~~li~~--------a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 237 A----G----------------KTSLEELAALIAG--------ADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred C----C----------------CCCHHHHHHHHhc--------CCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0 0 0112222333332 78888653 467799999999999997643
No 409
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.53 E-value=68 Score=21.31 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.7
Q ss_pred CceeEEEcCCC
Q 035495 64 FNINLVELPFC 74 (427)
Q Consensus 64 ~~i~~~~~~~~ 74 (427)
.|++|+++|..
T Consensus 22 ~GIRFVpiPv~ 32 (61)
T PF07131_consen 22 IGIRFVPIPVV 32 (61)
T ss_pred cCceeeccccc
Confidence 77999988853
No 410
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.43 E-value=2.7e+02 Score=25.62 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 20 IPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 20 ~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
...+.|++.|.+ .|++|..+..+.
T Consensus 11 ~r~~~~~~~l~~-~g~~v~~~g~~~ 34 (287)
T TIGR02853 11 ARQLELIRKLEE-LDAKISLIGFDQ 34 (287)
T ss_pred HHHHHHHHHHHH-CCCEEEEEeccc
Confidence 457899999999 999999998763
No 411
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.29 E-value=1.4e+02 Score=30.26 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHhhhhhcCCCCcEEEecCCcchHHHHHHHhCCceEEEecc
Q 035495 104 SPKTPLYNLLMDIKEKAGKPPICIITDTFFGWAVDVAKSAGSTNVTFATG 153 (427)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (427)
...+.....++++++ .+.++||.|. .+..+|+++|++.+.+.+.
T Consensus 129 ~~~~e~~~~~~~l~~---~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 129 VTEEDARSCVNDLRA---RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred cCHHHHHHHHHHHHH---CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 446677888888874 5699999997 3679999999999998774
No 412
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=23.28 E-value=4.7e+02 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=16.7
Q ss_pred CCcEEeccCcc-cc----hhhHHHHHhhhce-eEEEec
Q 035495 383 GLPTIGWPIAA-EQ----TYNSKMLVEEMGV-AVEMTR 414 (427)
Q Consensus 383 GvP~v~~P~~~-DQ----~~na~~v~~~lG~-G~~l~~ 414 (427)
+.|+++-|-+. .+ +..+..... +|+ |+.+.+
T Consensus 262 ~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~ 298 (335)
T PRK08673 262 HLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEV 298 (335)
T ss_pred CCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEe
Confidence 56666666432 22 344555555 577 566654
No 413
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.15 E-value=1.2e+02 Score=25.31 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=25.6
Q ss_pred CcHHHHHHHHhhhhhcCCCCcEEEecCCcch--HHHHHHHhCCceEEEe
Q 035495 105 PKTPLYNLLMDIKEKAGKPPICIITDTFFGW--AVDVAKSAGSTNVTFA 151 (427)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~D~vI~D~~~~~--~~~~A~~lgiP~v~~~ 151 (427)
...+++.+++ ++ ||+||....... ....-+..|||++.+.
T Consensus 58 ~~~n~E~ll~-l~------PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 58 GSLNVELIVA-LK------PDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCCHHHHhc-cC------CCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3455555555 44 999998643322 3455577899998874
No 414
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.02 E-value=1.8e+02 Score=27.42 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=33.8
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
...|+++.-++.|-..-...||..|++ +|++|.++-.....
T Consensus 31 ~~ii~v~gkgG~GKSt~a~nLa~~la~-~g~rVllid~D~~~ 71 (329)
T cd02033 31 TQIIAIYGKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKS 71 (329)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeeecc
Confidence 344567778899999999999999999 99999999765444
No 415
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.01 E-value=1.1e+02 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
|..+..+++++-. |. .- +.+|+.|++ +|++|++.....
T Consensus 1 ~~~~~k~v~iiG~---g~-~G-~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGA---GV-SG-LALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECC---CH-HH-HHHHHHHHH-CCCEEEEEeCCc
Confidence 4334567777743 33 22 499999999 999999987643
No 416
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=23.01 E-value=1.9e+02 Score=26.89 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=32.5
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||.++-.++.|=+ +|..|++ .||+|+++.-+...+.+.+
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~-~g~~V~~~~R~~~~~~l~~ 40 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAK-AGHDVTLLVRSRRLEALKK 40 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHh-CCCeEEEEecHHHHHHHHh
Confidence 47888888888854 6888999 9999999997766677776
No 417
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=22.90 E-value=2.4e+02 Score=22.36 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=23.2
Q ss_pred HhhhcccCcceeeccCChhhHHHHHhc---------CC-cEEeccC
Q 035495 356 LEILSHKSTGAFLSHCGWNSVLESLSQ---------GL-PTIGWPI 391 (427)
Q Consensus 356 ~~ll~~~~v~~~I~HgG~~s~~eal~~---------Gv-P~v~~P~ 391 (427)
..++.+++. .++.-||.||+.|.... .+ |++++=.
T Consensus 48 ~~m~~~sda-~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 48 EIMIESSDA-FIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHESE-EEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHhCCE-EEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 344555654 78889999999887432 34 9888763
No 418
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.88 E-value=1.5e+02 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
+...|++++++.. +...+..++.|.+ .|.+++++.
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~-~Gi~~~vi~ 42 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEE-EGIKAGVID 42 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHH-cCCceeEEe
Confidence 3457888888877 4567899999999 999998875
No 419
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.84 E-value=1.6e+02 Score=28.12 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
.+++|+++ ++.|.+ -..|++.|.+ +||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfI--G~~l~~~L~~-~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFI--ASHIARRLKA-EGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHH--HHHHHHHHHh-CCCEEEEEEe
Confidence 46788877 444443 3578999999 9999999874
No 420
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.69 E-value=78 Score=29.15 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=24.8
Q ss_pred hcccCcceeeccCChhhHHHHHh----cCCcEEeccC
Q 035495 359 LSHKSTGAFLSHCGWNSVLESLS----QGLPTIGWPI 391 (427)
Q Consensus 359 l~~~~v~~~I~HgG~~s~~eal~----~GvP~v~~P~ 391 (427)
...++ ++|+-||-||+..|.. .++|++++-.
T Consensus 62 ~~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 62 FKISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred ccCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 33466 8999999999998865 4789998765
No 421
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.63 E-value=1.7e+02 Score=25.66 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=28.2
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCcc-hHHhhh
Q 035495 15 AHGHLIPFLALAKQIHRSTGFKITIANTPLN-IQYLQN 51 (427)
Q Consensus 15 ~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~-~~~v~~ 51 (427)
+.|--.-..+++..+.. .||.|++++++.. ++.+..
T Consensus 38 ~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 38 GTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred CccHHHHHHHHHHHHHh-CCceEEEEEechhHHHHHHH
Confidence 66777778899999999 9999999999763 333333
No 422
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.56 E-value=84 Score=29.40 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=29.6
Q ss_pred hhcccCcceeeccCChhhHHHHHh---cCCcEEeccCccc
Q 035495 358 ILSHKSTGAFLSHCGWNSVLESLS---QGLPTIGWPIAAE 394 (427)
Q Consensus 358 ll~~~~v~~~I~HgG~~s~~eal~---~GvP~v~~P~~~D 394 (427)
-|..-++..+|.=||-+|+.-|.. +|+|+|++|-.-|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 355567779999999999877755 5999999997654
No 423
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.48 E-value=1.8e+02 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=27.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCE
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFK 36 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~ 36 (427)
+-|+|.-.|..|--.....|.++|++ +||+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~-~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKE-RGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHh-hccc
Confidence 45778889999999999999999999 9985
No 424
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=22.43 E-value=2.1e+02 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=29.0
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~ 45 (427)
.+++++..+. =+-|++.++++|.+ +|++|+++-....
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~-~~~~v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKE-AGNKVITIIGARN 135 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHH-CCCeEEEEEecCC
Confidence 4677777544 48899999999999 9999998865443
No 425
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.42 E-value=1.8e+02 Score=20.90 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=27.3
Q ss_pred cEEEEeCCCCc--cCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 6 EHIGMLPLMAH--GHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 6 ~~il~~~~p~~--GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
-+|+++|.... .+..-...++..|+. .|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 36788886653 466678899999999 999998854
No 426
>PLN02316 synthase/transferase
Probab=22.36 E-value=7.4e+02 Score=27.59 Aligned_cols=46 Identities=9% Similarity=-0.130 Sum_probs=30.7
Q ss_pred CCcEEeccccchH---hhhcccCcceeecc---CC-hhhHHHHHhcCCcEEeccC
Q 035495 344 KQGLLVRNWAPQL---EILSHKSTGAFLSH---CG-WNSVLESLSQGLPTIGWPI 391 (427)
Q Consensus 344 ~~~v~~~~~vpq~---~ll~~~~v~~~I~H---gG-~~s~~eal~~GvP~v~~P~ 391 (427)
+.++.+....+.. .+++.++ +|+.- =| ..+.+||+++|+|.|+.-.
T Consensus 899 ~~rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~v 951 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKT 951 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcC
Confidence 3456655444543 5788888 56643 23 3589999999999887544
No 427
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=22.34 E-value=7e+02 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.6
Q ss_pred CcEEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 5 NEHIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 5 ~~~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
.++|+++- .+..|. .+|+.|++ +||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHH-CCCeEEEeCCC
Confidence 46888886 777775 58999999 99999998753
No 428
>PRK09739 hypothetical protein; Provisional
Probab=22.29 E-value=2.1e+02 Score=24.40 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=22.5
Q ss_pred CcEEEEeC-CCCcc-CHHH-HHHHHHHHHhcCCCEEEEEe
Q 035495 5 NEHIGMLP-LMAHG-HLIP-FLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 5 ~~~il~~~-~p~~G-H~~P-~l~La~~L~~~~Gh~Vt~~~ 41 (427)
++||+++. +|-.+ ...- .-.++++|.+ +||+|+++-
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 56777664 55433 2222 3456677788 899999764
No 429
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.24 E-value=1.7e+02 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=31.2
Q ss_pred cEEEEeC-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~-~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+.|++.. -++.|-..-.-.||..|++ .|++|..+=..
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 3566555 6799999999999999999 99999998654
No 430
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.19 E-value=1.3e+02 Score=30.47 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCcEEEecCCcchHHHHHHHhCCceEEEe
Q 035495 123 PPICIITDTFFGWAVDVAKSAGSTNVTFA 151 (427)
Q Consensus 123 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 151 (427)
++|++|.+. .+..+|+++|||.+.+.
T Consensus 437 ~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 499999886 36888999999998874
No 431
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.12 E-value=1.5e+02 Score=25.13 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=23.9
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
|||.++ +.||+ -+.+|..|++ .||+|+.+-.. .+.++.
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~-~G~~V~g~D~~--~~~v~~ 38 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAE-KGHQVIGVDID--EEKVEA 38 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHH-TTSEEEEE-S---HHHHHH
T ss_pred CEEEEE---CCCcc--hHHHHHHHHh-CCCEEEEEeCC--hHHHHH
Confidence 466666 44444 3788999999 99999988653 344444
No 432
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=21.98 E-value=1.3e+02 Score=27.71 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=28.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcc--hHHhhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN--IQYLQN 51 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~--~~~v~~ 51 (427)
+|.|+-.+..| .++|+.|.+ +||+|++..-... .+.+..
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~-aG~~v~v~~r~~~ka~~~~~~ 42 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLK-AGHEVTVYNRTPEKAAELLAA 42 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHH-CCCEEEEEeCChhhhhHHHHH
Confidence 67777777666 589999999 9999999975432 344444
No 433
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.91 E-value=90 Score=29.31 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=29.0
Q ss_pred hcccCcceeeccCChhhHHHHHh---cCCcEEeccCccc
Q 035495 359 LSHKSTGAFLSHCGWNSVLESLS---QGLPTIGWPIAAE 394 (427)
Q Consensus 359 l~~~~v~~~I~HgG~~s~~eal~---~GvP~v~~P~~~D 394 (427)
|..-++..+|.=||-+|+.-|.. .|+|+|++|-.-|
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 44557778999999999977755 5999999998654
No 434
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=21.76 E-value=1.2e+02 Score=28.20 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.2
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
++|.|+-.+..| ..+|..|++ .||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~-~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLAR-NGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh-CCCEEEEEECC
Confidence 589999887777 467888999 99999998753
No 435
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=21.67 E-value=1.2e+02 Score=23.00 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcchHHhhh
Q 035495 20 IPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (427)
Q Consensus 20 ~P~l~La~~L~~~~Gh~Vt~~~~~~~~~~v~~ 51 (427)
.|.+.|+++|.+ +|.+|.+.=+-........
T Consensus 17 Sp~~~l~~~L~~-~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKE-RGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHH-TT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCEEEEECCccChHHHHh
Confidence 689999999999 9999998866555544444
No 436
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=21.67 E-value=1.9e+02 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 4 ENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 4 ~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
+..+|+++-.+..| ...++.|.+ .|++|++++...
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~-~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLK-YGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHH-CCCeEEEEcCCC
Confidence 34578888776555 577889999 999999997543
No 437
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=21.64 E-value=1.1e+02 Score=28.30 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=27.5
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~ 43 (427)
+|||+++-.++.|=+ +|..|.+ .||+|+++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~-~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLAR-AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHh-CCCCeEEEEec
Confidence 478999999999855 5667889 89999999864
No 438
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=21.63 E-value=9.6e+02 Score=25.28 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred EEEEeCC-CCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 7 HIGMLPL-MAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 7 ~il~~~~-p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
+|.+.+. ...|=..-.+.|++.|.+ +|.+|.++=
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeC
Confidence 5666654 457999999999999999 999999974
No 439
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=21.62 E-value=99 Score=28.40 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhcccCcceeeccC
Q 035495 292 ISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILSHKSTGAFLSHC 371 (427)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~~~~v~~~I~Hg 371 (427)
.+.+..+.+.+|+...+.+.||.+..+-+ -.++.++++.+.+-+++. .||-..
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGyg-------------------------~~rlL~~ld~~~i~~~pK--~~iGyS 98 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGYG-------------------------ANRLLPYLDYDAIRKNPK--IFIGYS 98 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS--------------------------GGGGGGGCHHHHHHHSG---EEEE-G
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeecccc-------------------------HHHHHhcccccccccCCC--EEEEec
Confidence 34566788999999999999999887620 011336666666666666 577776
Q ss_pred ChhhHHHHHhc--CCcEEeccCc
Q 035495 372 GWNSVLESLSQ--GLPTIGWPIA 392 (427)
Q Consensus 372 G~~s~~eal~~--GvP~v~~P~~ 392 (427)
-.-+++-+++. |.+.+-=|+.
T Consensus 99 DiTaL~~al~~~~g~~t~hGp~~ 121 (284)
T PF02016_consen 99 DITALHNALYAKTGLVTFHGPML 121 (284)
T ss_dssp GGHHHHHHHHHHHTBEEEES--H
T ss_pred chHHHHHHHHHhCCCeEEEcchh
Confidence 66666666543 6666666653
No 440
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.56 E-value=1.8e+02 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=28.6
Q ss_pred CCcEEEEeCCCCcc-C---HHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 4 ENEHIGMLPLMAHG-H---LIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 4 ~~~~il~~~~p~~G-H---~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+|+||+++..+..+ | +.....++++|.+ .||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcC
Confidence 36799998876443 2 3456688999999 9999988854
No 441
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=21.48 E-value=2.2e+02 Score=25.46 Aligned_cols=42 Identities=14% Similarity=-0.027 Sum_probs=33.4
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcchH
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~~ 47 (427)
+.+++...-++.|-......||..|+. +|++|.++-......
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNA 44 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCc
Confidence 344445567799999999999999999 999999997765443
No 442
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=21.34 E-value=4e+02 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=23.0
Q ss_pred EEEecCCccc---CCHHHHHHHHHHHHhCCCcEEEEE
Q 035495 282 LHISFGSQNT---ISSSQMMELDIGLEASAKSFLWVI 315 (427)
Q Consensus 282 V~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~ 315 (427)
|.|-||..+. .+-.....+.+++++.++++...-
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 4455565543 234556779999999999977664
No 443
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.29 E-value=74 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.2
Q ss_pred eeeccCChhhHHHHH---hcCCcEEeccCc
Q 035495 366 AFLSHCGWNSVLESL---SQGLPTIGWPIA 392 (427)
Q Consensus 366 ~~I~HgG~~s~~eal---~~GvP~v~~P~~ 392 (427)
++|.-||-||+.+++ ..++|+++++..
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G 89 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINMG 89 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeCC
Confidence 899999999999988 446799999963
No 444
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=21.28 E-value=1.6e+02 Score=25.73 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=29.6
Q ss_pred hccC-CCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEE
Q 035495 272 WLDL-HDPASVLHISFGSQNTISSSQMMELDIGLEASAKSFL 312 (427)
Q Consensus 272 ~l~~-~~~~~vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 312 (427)
|||+ .+...+|||..=..+..+-..-..+..+|...+++++
T Consensus 13 fLdPV~~~~rtVyv~vrNTSd~~~~l~~~i~~~L~~kGY~vv 54 (215)
T PF05818_consen 13 FLDPVAPSQRTVYVQVRNTSDKDINLESQIISALQAKGYQVV 54 (215)
T ss_pred EeCCCCcccceEEEEEecCCCCccchHHHHHHHHHHCCCEEe
Confidence 5665 3456799999876665444556669999999998864
No 445
>PRK14974 cell division protein FtsY; Provisional
Probab=21.17 E-value=2.1e+02 Score=27.05 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=34.4
Q ss_pred cEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 6 EHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 6 ~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
.-|+|+-.++.|-..-...||..|.. +|++|.+++...++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R 180 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFR 180 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCc
Confidence 34667778899999999999999999 99999999877654
No 446
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=21.11 E-value=94 Score=31.83 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=21.9
Q ss_pred cceeeccCChh------hHHHHHhcCCcEEecc
Q 035495 364 TGAFLSHCGWN------SVLESLSQGLPTIGWP 390 (427)
Q Consensus 364 v~~~I~HgG~~------s~~eal~~GvP~v~~P 390 (427)
.+++++|.|-| ++.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33788888854 7899999999999984
No 447
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.09 E-value=3.2e+02 Score=25.17 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCcchhhhccCCchhHHHHhccCCCcEEeccccchHhhhc
Q 035495 281 VLHISFGSQNTISSSQMMELDIGLEASAKSFLWVITPPVGFDLRAEFRSEWLPEGFEERIKEIKQGLLVRNWAPQLEILS 360 (427)
Q Consensus 281 vV~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~vpq~~ll~ 360 (427)
.+.++=-|-.....+.+..+.+.+++.+..+.+..... -.+..-+..-..
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~------------------------------~~~~~~~a~~~~ 61 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD------------------------------AHDARHLVAAAL 61 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC------------------------------HHHHHHHHHHHH
Q ss_pred ccCcceeeccCChhhHHHHH----hcCCcEEecc
Q 035495 361 HKSTGAFLSHCGWNSVLESL----SQGLPTIGWP 390 (427)
Q Consensus 361 ~~~v~~~I~HgG~~s~~eal----~~GvP~v~~P 390 (427)
.....++|--||-||+.|++ ..++|+-++|
T Consensus 62 ~~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 62 AKGTDALVVVGGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred hcCCCEEEEECCchHHHHHhHHhccCCCcEEEEe
No 448
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.08 E-value=1.1e+02 Score=29.79 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 3 SENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 3 ~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
.++.||+++-.+..| +..|+.|.. .+++||++....
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~-~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDP-KKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCc-CCCeEEEEcCCC
Confidence 356789988877666 456888877 789999998544
No 449
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.92 E-value=98 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=25.7
Q ss_pred hhcccCcceeeccCChhhHHHHHh----cCCcEEeccC
Q 035495 358 ILSHKSTGAFLSHCGWNSVLESLS----QGLPTIGWPI 391 (427)
Q Consensus 358 ll~~~~v~~~I~HgG~~s~~eal~----~GvP~v~~P~ 391 (427)
+...++ ++|+=||-||+..|.. .++|++++-.
T Consensus 61 ~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 61 LDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred cccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 334466 8999999999999987 4789998765
No 450
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=20.89 E-value=2e+02 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCcEEEEeC--CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 4 ENEHIGMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 4 ~~~~il~~~--~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
++++++.++ -++.|-..-...||.+|++.+|++|.++-.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 345555444 5788999999999999985159999999765443
No 451
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=20.86 E-value=1.4e+02 Score=29.12 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=25.3
Q ss_pred CcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 5 NEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 5 ~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
+++|.|+-.+..| +.+|..|++ +||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~-~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFAS-RQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHh-CCCEEEEEeC
Confidence 4688888665555 578999999 9999998864
No 452
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=20.72 E-value=2.2e+02 Score=25.64 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=35.3
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCcchHHhh
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQ 50 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~-Gh~Vt~~~~~~~~~~v~ 50 (427)
-+++...++.|-..-.+.++..++. . |+.|.|++.+...+.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEcccCHHHHH
Confidence 4567778899999999999999987 6 99999999877554443
No 453
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=20.71 E-value=57 Score=28.79 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=18.7
Q ss_pred eeeccCChhhHHHHHhcCCcE
Q 035495 366 AFLSHCGWNSVLESLSQGLPT 386 (427)
Q Consensus 366 ~~I~HgG~~s~~eal~~GvP~ 386 (427)
++|+|||...+.-+...|.|.
T Consensus 178 lvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 178 IIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEEcChHHHHHHHHHHhCCCH
Confidence 799999999999999999773
No 454
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=20.63 E-value=1.6e+02 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.8
Q ss_pred eCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 11 LPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 11 ~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
++.++.|-+--.+.|++.|.+ +|++|.+++-.+
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsRGY 89 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQA-RGLKPGVVSRGY 89 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHH-CCCeEEEECCCC
Confidence 678999999999999999999 999999998543
No 455
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=20.49 E-value=1.7e+02 Score=26.43 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=32.2
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCc
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~ 44 (427)
.|.|+-=++.|-..-.+.||.+|++ +|++|.++-...
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~-~G~rVLlID~Dp 39 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDP 39 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 5777778899999999999999999 999999995443
No 456
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.45 E-value=1.9e+02 Score=22.89 Aligned_cols=32 Identities=6% Similarity=0.048 Sum_probs=21.2
Q ss_pred EEeCCCC-ccCHHHHHHHHHHHHhcCCCEE-EEEe
Q 035495 9 GMLPLMA-HGHLIPFLALAKQIHRSTGFKI-TIAN 41 (427)
Q Consensus 9 l~~~~p~-~GH~~P~l~La~~L~~~~Gh~V-t~~~ 41 (427)
++...|- .....-.+.+|+++.+ .||+| +++-
T Consensus 6 v~~~~Py~~~~~~~al~~A~aa~~-~gh~v~~vFf 39 (128)
T PRK00207 6 AVTGPAYGTQQASSAYQFAQALLA-EGHELVSVFF 39 (128)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHh-CCCCeeEEEE
Confidence 3344453 3334568889999999 99984 5554
No 457
>PRK06270 homoserine dehydrogenase; Provisional
Probab=20.27 E-value=5.9e+02 Score=24.05 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=37.2
Q ss_pred chHhhhcccCcceeec------cCC---hhhHHHHHhcCCcEEe---ccCcccchhhHHHHHhhhceeEEE
Q 035495 354 PQLEILSHKSTGAFLS------HCG---WNSVLESLSQGLPTIG---WPIAAEQTYNSKMLVEEMGVAVEM 412 (427)
Q Consensus 354 pq~~ll~~~~v~~~I~------HgG---~~s~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~lG~G~~l 412 (427)
...++|..+++.++|- |+| ..-+.+||.+|+++|+ -|....-....+..++. |+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4456675554445554 443 4456899999999999 48755444555556665 776654
No 458
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=20.25 E-value=6.5e+02 Score=25.56 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=26.8
Q ss_pred CCcEEE----ecCCcchHHHHHHHhCCceEEEecch
Q 035495 123 PPICII----TDTFFGWAVDVAKSAGSTNVTFATGG 154 (427)
Q Consensus 123 ~~D~vI----~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (427)
.+|.+| ||=..+.....|.+++||.|.+.-.+
T Consensus 89 ~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 89 RFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 489777 88778888999999999999986553
No 459
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=20.22 E-value=2.1e+02 Score=25.94 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~ 42 (427)
|+..+.+-++++.-+.| =-..+|+.|++ +||+|.++.=
T Consensus 1 ~~~~~~~~~lITGASsG---IG~~~A~~lA~-~g~~liLvaR 38 (265)
T COG0300 1 PGPMKGKTALITGASSG---IGAELAKQLAR-RGYNLILVAR 38 (265)
T ss_pred CCCCCCcEEEEECCCch---HHHHHHHHHHH-CCCEEEEEeC
Confidence 34333444555544443 13689999999 9999999873
No 460
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.19 E-value=1.9e+02 Score=28.41 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=34.3
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCcch
Q 035495 7 HIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (427)
Q Consensus 7 ~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~~~~~~ 46 (427)
-|+|+-.++.|-.--...||..|+. +|++|.+++...++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccc
Confidence 3556667899999999999999999 99999999988776
No 461
>PRK08163 salicylate hydroxylase; Provisional
Probab=20.13 E-value=1.3e+02 Score=28.85 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCCCCcEEEEeCCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 035495 1 MGSENEHIGMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (427)
Q Consensus 1 m~~~~~~il~~~~p~~GH~~P~l~La~~L~~~~Gh~Vt~~~ 41 (427)
|+ ++.+|+|+-.+-.| +.+|..|++ +|++|+++=
T Consensus 1 ~~-~~~~V~IvGaGiaG-----l~~A~~L~~-~g~~v~v~E 34 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGG-----LAAALALAR-QGIKVKLLE 34 (396)
T ss_pred CC-CCCeEEEECCcHHH-----HHHHHHHHh-CCCcEEEEe
Confidence 55 45789998877655 788899999 999999984
Done!