BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035496
(833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 153/318 (48%), Gaps = 27/318 (8%)
Query: 27 KTLGVTYDGRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIH 86
+ + Y S + +G+ SGSIHY+R W D + K K GLN IQTYV WN H
Sbjct: 7 RMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFH 66
Query: 87 EPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRS 146
EP GQY F +D+ F+++ E G+ LR GP+I AEW GGLP WL E ++I RS
Sbjct: 67 EPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRS 126
Query: 147 DNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYST-----------IQLAY 195
+ + + K++ +++ KMK L GGP+I VQ+ENEY + +Q +
Sbjct: 127 SDPDYLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRF 184
Query: 196 REK-GNKYVQWTGNLAVGMNIGVPWVMCKQKDAPDPIINTCNGRYCGDTFTGPNK--PNK 252
R G+ V +T + A ++ C ++ G D F K P
Sbjct: 185 RHHLGDDVVLFTTDGAHKT-----FLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKG 239
Query: 253 PSLWTENWTAQFRVYGDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNF----GRT 308
P + +E +T +G P S E +A S ++R G +N YM+ GGTNF G
Sbjct: 240 PLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILAR-GASVNLYMFIGGTNFAYWNGAN 298
Query: 309 SANFVTTRYYD-EAPLDE 325
S YD +APL E
Sbjct: 299 SPYAAQPTSYDYDAPLSE 316
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 642 IQMNRMGKGMIWINGQSIGRYW 663
IQ KG +WING ++GRYW
Sbjct: 548 IQFPGWTKGQVWINGFNLGRYW 569
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 160/323 (49%), Gaps = 29/323 (8%)
Query: 37 SLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ 96
+ ++NG+ ++ + IHY R + W I+ K G N I YVFWN HEP +G+Y+F
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 97 GQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMK 156
GQ D+ F ++ E+G Y +R GP++ AEW GGLP+WL + ++I R + + +K
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 157 KYVTMIIKKMKDEKLFASQGGPIILVQIENEYST--IQLAYREKGNKYVQWTGNLAVGMN 214
++ + K++ D L S+GG II VQ+ENEY I Y + V+ G
Sbjct: 134 LFLNEVGKQLAD--LQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAG------F 185
Query: 215 IGVPWVMCK-----QKDAPDPIINTCN---GRYCGDTFTGPN--KPNKPSLWTENWTAQF 264
GVP C + +A D ++ T N G + F +P+ P +E W+ F
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 265 RVYGDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFGR-TSANF-----VTTRYY 318
+G RS E+L + RN + + Y HGGT+FG ANF T Y
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYD 304
Query: 319 DEAPLDEFAVFAKGPKWGHLKDL 341
+AP++E PK+ +++L
Sbjct: 305 YDAPINESGKVT--PKYLEVRNL 325
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 649 KGMIWINGQSIGRYWISYLSPLGQPTQSEYHIPRSYLKPTGNLMVIL 695
KG +W+NG +IGRYW +G P Q+ Y +P +LK N ++IL
Sbjct: 532 KGXVWVNGHAIGRYW-----EIG-PQQTLY-VPGCWLKKGENEIIIL 571
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 24/305 (7%)
Query: 40 INGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQY 99
++GK + SG+IHY R P+ W + K G N ++TYV WN+HEP +G+++F+G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 100 DLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYV 159
DL KF+++ + G+YA +R PFI AEW GGLP WL +N+ RS + + + +Y
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130
Query: 160 TMIIKKMKDEKLFASQGGPIILVQIENEYSTI--QLAYREKGNKYVQWTGNLAVGMNIGV 217
++ ++ GG I+++Q+ENEY + AY + ++ G
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDG 188
Query: 218 PWVMCKQKDA---PDPIINTCNGRYCGDTFT------GPNKPNKPSLWTENWTAQFRVYG 268
PW + D + G F+ + P + E W F +
Sbjct: 189 PWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWK 248
Query: 269 DPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFG-------RTSANFVTTRYYD-E 320
+P R ++LA R + G+ IN YM+HGGTNFG R + + YD +
Sbjct: 249 EPIITRDPKELA-DAVREVLEQGS-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYD 306
Query: 321 APLDE 325
A LDE
Sbjct: 307 ALLDE 311
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 621 RPALTWFKTYFDAPEGNHPIAIQMNRMGKGMIWINGQSIGRYWISYLSPLGQPTQSEYHI 680
+PA + + P+ + + ++ GKG+ ++NGQ++GR+W +G PT S Y I
Sbjct: 505 QPAFYAYDFTVEEPKDTY---LDLSEFGKGVAFVNGQNLGRFW-----NVG-PTLSLY-I 554
Query: 681 PRSYLKPTGNLMVIL 695
P SYLK N ++I
Sbjct: 555 PHSYLKEGANRIIIF 569
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 5/192 (2%)
Query: 31 VTYDGRSLIINGKREILFSGSIH-YTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPV 89
VT+D S+ +NG+R ++FSG +H Y ++ D+ +K K G N + YV W + E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 90 QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNE 149
G Y+ +G +DL F E G+Y R GP+I AE + GG P WL+ V I R+ +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 150 PFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYRE-KGNKYVQWTGN 208
+ Y + I + ++ + GGPIIL Q ENEYS Y Y+Q+ +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 209 LAVGMNIGVPWV 220
A I VP++
Sbjct: 183 HARDAGIVVPFI 194
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 31 VTYDGRSLIINGKREILFSGSIHYTR-STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPV 89
VT+D SL ++G+R ++FSG +H R P ++ D+ K K G N + YV W + E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 90 QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNE 149
G++ G + L F + + G+Y R GP+I AE + GG P WL+ V+ R+D
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 150 PFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNL 209
+ + YV I + ++ + GGP+IL Q ENEYS Y+Q+ +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 210 AVGMNIGVPWV 220
A I VP +
Sbjct: 203 ARNAGIIVPLI 213
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 380 FLSNNSTYMEKTISFRGRNYYL-----PSK-------SISILPDCQTVVYNTQTIVSQHN 427
F+ NN + E + +F+ Y+L P+K I++L D Q + I++Q +
Sbjct: 282 FVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTL---AAILAQVS 338
Query: 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITL 487
R P AN +W Y S LE+K PL+ + + + A I ++
Sbjct: 339 ERESTPWWQANLANVKNWRAYLAS------LEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 392
Query: 488 GRGDLPMRAN 497
GD+ + AN
Sbjct: 393 DVGDINLNAN 402
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 380 FLSNNSTYMEKTISFRGRNYYL-----PSK-------SISILPDCQTVVYNTQTIVSQHN 427
F+ NN + E + +F+ Y+L P+K I++L D Q + I++Q +
Sbjct: 282 FVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTL---AAILAQVS 338
Query: 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITL 487
R P AN +W Y S LE+K PL+ + + + A I ++
Sbjct: 339 ERESTPWWQANLANVKNWRAYLAS------LEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 392
Query: 488 GRGDLPMRAN 497
GD+ + AN
Sbjct: 393 DVGDINLNAN 402
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 380 FLSNNSTYMEKTISFRGRNYYL-----PSK-------SISILPDCQTVVYNTQTIVSQHN 427
F+ NN + E + +F+ Y+L P+K I++L D Q + I++Q +
Sbjct: 282 FVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTL---AAILAQVS 338
Query: 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITL 487
R P AN +W Y S LE+K PL+ + + + A I ++
Sbjct: 339 ERESTPWWQANLANVKNWRAYLAS------LEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 392
Query: 488 GRGDLPMRAN 497
GD+ + AN
Sbjct: 393 DVGDINLNAN 402
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 380 FLSNNSTYMEKTISFRGRNYYL-----PSK-------SISILPDCQTVVYNTQTIVSQHN 427
F+ NN + E + +F+ Y+L P+K I++L D Q + I++Q +
Sbjct: 274 FVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTL---AAILAQVS 330
Query: 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITL 487
R P AN +W Y S LE+K PL+ + + + A I ++
Sbjct: 331 ERESTPWWQANLANVKNWRAYLAS------LEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 384
Query: 488 GRGDLPMRAN 497
GD+ + AN
Sbjct: 385 DVGDINLNAN 394
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 380 FLSNNSTYMEKTISFRGRNYYL-----PSK-------SISILPDCQTVVYNTQTIVSQHN 427
F+ NN + E + +F+ Y+L P+K I++L D Q + I++Q +
Sbjct: 274 FVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTL---AAILAQVS 330
Query: 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITL 487
R P AN +W Y S LE+K PL+ + + + A I ++
Sbjct: 331 ERESTPWWQANLANVKNWRAYLAS------LEDKQEGPLQAYQVLRAVNKIAEPDAIYSI 384
Query: 488 GRGDLPMRAN 497
GD+ + AN
Sbjct: 385 DVGDINLNAN 394
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 31 VTYDGR-SLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPV 89
VT DGR +L ++G + + ++ + + P + ++ G N +Q + W EPV
Sbjct: 43 VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAIEKVGANTVQVPIAWEQIEPV 102
Query: 90 QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGG---LPYWL--------RE 138
+GQ++F ++ ++ E +RL W + P W+ R
Sbjct: 103 EGQFDFS-------YLDLLLEQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRL 155
Query: 139 VQNITFRS------DNEPFKYHMKKYVTMIIK-KMKDEKLFASQGGPIILVQIENEYST 190
+++ RS K +V + K KD A+Q +I VQ+ENE T
Sbjct: 156 IKDDGERSYSXSPLAKSTLDADRKAFVALXTHLKAKD----AAQ-KTVIXVQVENETGT 209
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 23/89 (25%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP QG +NF G LV + K+I H + W H LP W+
Sbjct: 51 WDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLV------------W-HSQLPSWVSS 97
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167
+ +D MK ++T ++ + K
Sbjct: 98 I------TDKNTLTNVMKNHITTLMTRYK 120
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 23/89 (25%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP QG +NF G LV + K+I H + W H LP W+
Sbjct: 51 WDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLV------------W-HSQLPSWVSS 97
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167
+ +D MK ++T ++ + K
Sbjct: 98 I------TDKNTLTNVMKNHITTLMTRYK 120
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 23/89 (25%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP QG +NF G LV + K+I H + W H LP W+
Sbjct: 51 WDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLV------------W-HSQLPSWVSS 97
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167
+ +D MK ++T ++ + K
Sbjct: 98 I------TDKNTLTNVMKNHITTLMTRYK 120
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 23/89 (25%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP QG +NF G LV + K+I H + W H LP W+
Sbjct: 51 WDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLV------------W-HSQLPSWVSS 97
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167
+ +D MK ++T ++ + K
Sbjct: 98 I------TDKNTLTNVMKNHITTLMTRYK 120
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 23/89 (25%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP QG +NF G LV + K+IG GM W H LP W+
Sbjct: 51 WDATEPSQGNFNFAGADYLVNWAQQNGKLIG-GGMLV-----------W-HSQLPSWVSS 97
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167
+ +D MK ++T ++ + K
Sbjct: 98 I------TDKNTLTNVMKNHITTLMTRYK 120
>pdb|1P85|K Chain K, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|K Chain K, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS6|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2T|M Chain M, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|M Chain M, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|M Chain M, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|M Chain M, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|M Chain M, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|M Chain M, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DF2|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|M Chain M, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3BBX|M Chain M, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3FIK|M Chain M, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3E1B|F Chain F, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|F Chain F, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|M Chain M, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|M Chain M, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|2WWQ|M Chain M, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|1VT2|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3OFQ|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|M Chain M, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3IZT|N Chain N, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|N Chain N, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|M Chain M, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|M Chain M, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|M Chain M, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3SGF|Q Chain Q, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|Q Chain Q, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3J0T|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|O Chain O, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J19|M Chain M, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
pdb|4GAR|M Chain M, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|M Chain M, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 136
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 608 GLNKVKWTKIEGKRPALT---------WFKTYFDAPEGNHPIAIQMNRMGKGMIWINGQS 658
G ++ +IE R A+T W + + D P P+A++M + GKG +
Sbjct: 37 GRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGK-GKGNV------ 89
Query: 659 IGRYWISYLSP 669
YW++ + P
Sbjct: 90 --EYWVALIQP 98
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 30/128 (23%)
Query: 83 WNIHEPVQGQYNFQGQYDLVKFI----KMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138
W+ EP +GQ+ F G LV F K+I H + W H LP W+
Sbjct: 52 WDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLV------------W-HSQLPGWVSS 98
Query: 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQ--LAYR 196
+ +D +K ++T ++ + K K++A +L +I NE +++ + Y
Sbjct: 99 I------TDKNTLISVLKNHITTVMTRYKG-KIYAWD----VLNEIFNEDGSLRNSVFYN 147
Query: 197 EKGNKYVQ 204
G YV+
Sbjct: 148 VIGEDYVR 155
>pdb|2GYA|K Chain K, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|K Chain K, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 131
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 608 GLNKVKWTKIEGKRPALT---------WFKTYFDAPEGNHPIAIQMNRMGKGMIWINGQS 658
G ++ +IE R A+T W + + D P P+A++M + GKG +
Sbjct: 35 GRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGK-GKGNV------ 87
Query: 659 IGRYWISYLSP 669
YW++ + P
Sbjct: 88 --EYWVALIQP 96
>pdb|2OSY|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
pdb|2OSY|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
Length = 481
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 34 DGRSLIINGKREILFSGSIHYTRSTPDMWP-----DLIQKAKRGGLNVIQTYVFWNIHEP 88
DGRSLI+ G + +S PD P DL ++ G N ++ + W EP
Sbjct: 41 DGRSLILRGFN------TASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEP 94
Query: 89 VQGQYNFQ 96
G Y+ Q
Sbjct: 95 APGVYDQQ 102
>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
Gm3 Complex
Length = 481
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 34 DGRSLIINGKREILFSGSIHYTRSTPDMWP-----DLIQKAKRGGLNVIQTYVFWNIHEP 88
DGRSLI+ G + +S PD P DL ++ G N ++ + W EP
Sbjct: 41 DGRSLILRGFN------TASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEP 94
Query: 89 VQGQYNFQ 96
G Y+ Q
Sbjct: 95 APGVYDQQ 102
>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
Length = 481
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 34 DGRSLIINGKREILFSGSIHYTRSTPDMWP-----DLIQKAKRGGLNVIQTYVFWNIHEP 88
DGRSLI+ G + +S PD P DL ++ G N ++ + W EP
Sbjct: 41 DGRSLILRGFN------TASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEP 94
Query: 89 VQGQYNFQ 96
G Y+ Q
Sbjct: 95 APGVYDQQ 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,903,675
Number of Sequences: 62578
Number of extensions: 1220937
Number of successful extensions: 2426
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2397
Number of HSP's gapped (non-prelim): 30
length of query: 833
length of database: 14,973,337
effective HSP length: 107
effective length of query: 726
effective length of database: 8,277,491
effective search space: 6009458466
effective search space used: 6009458466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)