Query 035496
Match_columns 833
No_of_seqs 339 out of 1664
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-211 5E-216 1831.9 72.7 809 5-831 6-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-152 6E-157 1287.0 43.0 629 28-723 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 7E-89 1.5E-93 745.0 18.5 298 37-344 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.3E-40 7.2E-45 384.3 13.9 288 31-328 1-331 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 4.8E-21 1E-25 215.1 9.3 144 51-212 1-162 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 6.8E-20 1.5E-24 161.7 6.2 76 751-830 1-80 (80)
7 KOG4729 Galactoside-binding le 99.7 1.4E-18 2.9E-23 179.7 7.6 86 744-832 41-131 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.1 5.2E-09 1.1E-13 114.3 18.1 151 31-222 1-157 (298)
9 PF13364 BetaGal_dom4_5: Beta- 99.0 5.2E-10 1.1E-14 105.0 7.4 69 621-695 33-104 (111)
10 PRK10150 beta-D-glucuronidase; 98.9 1.7E-07 3.6E-12 112.3 23.6 158 29-221 276-447 (604)
11 PF00150 Cellulase: Cellulase 98.8 6.4E-08 1.4E-12 103.3 14.4 161 41-223 4-172 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.5 4.7E-07 1E-11 85.1 9.7 84 466-556 24-110 (111)
13 COG3250 LacZ Beta-galactosidas 98.4 2.2E-06 4.7E-11 104.6 15.4 137 29-212 284-426 (808)
14 PRK10340 ebgA cryptic beta-D-g 98.4 3E-06 6.6E-11 106.8 16.3 148 30-219 319-472 (1021)
15 PRK09525 lacZ beta-D-galactosi 98.4 3.7E-06 8E-11 105.9 16.6 147 30-221 335-487 (1027)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.6E-05 3.4E-10 85.3 9.1 116 83-223 3-125 (254)
17 PF02837 Glyco_hydro_2_N: Glyc 98.0 3.2E-05 6.9E-10 77.0 10.0 98 473-576 64-164 (167)
18 PLN02705 beta-amylase 97.9 4.6E-05 1E-09 88.2 9.2 81 58-144 266-358 (681)
19 PF03198 Glyco_hydro_72: Gluca 97.8 0.00025 5.3E-09 77.4 13.7 152 29-219 9-179 (314)
20 PLN02905 beta-amylase 97.8 7.4E-05 1.6E-09 86.8 9.5 79 60-144 286-376 (702)
21 PLN02801 beta-amylase 97.7 9.8E-05 2.1E-09 84.5 9.5 81 58-144 35-127 (517)
22 TIGR03356 BGL beta-galactosida 97.7 7.3E-05 1.6E-09 86.1 8.3 97 60-168 54-151 (427)
23 PLN02803 beta-amylase 97.7 0.00015 3.2E-09 83.4 9.7 80 59-144 106-197 (548)
24 PLN00197 beta-amylase; Provisi 97.7 0.00015 3.3E-09 83.5 9.6 81 58-144 125-217 (573)
25 PLN02161 beta-amylase 97.7 0.00019 4.1E-09 82.1 10.2 80 59-144 116-207 (531)
26 PF01373 Glyco_hydro_14: Glyco 97.4 0.00019 4.2E-09 80.7 6.5 114 61-184 17-152 (402)
27 PF13204 DUF4038: Protein of u 97.4 0.00041 8.9E-09 76.0 8.0 228 35-291 2-274 (289)
28 PF00331 Glyco_hydro_10: Glyco 97.1 0.0011 2.3E-08 73.8 7.0 157 47-224 11-179 (320)
29 COG3693 XynA Beta-1,4-xylanase 96.9 0.004 8.6E-08 68.1 9.7 133 69-224 55-194 (345)
30 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.002 4.3E-08 64.2 6.9 66 622-695 67-136 (167)
31 PF00232 Glyco_hydro_1: Glycos 96.9 0.00046 9.9E-09 80.2 2.6 97 60-168 58-156 (455)
32 PRK09852 cryptic 6-phospho-bet 96.5 0.0028 6E-08 74.1 5.2 96 60-167 71-169 (474)
33 PRK15014 6-phospho-beta-glucos 96.5 0.0031 6.7E-08 73.8 5.5 96 60-167 69-167 (477)
34 COG2730 BglC Endoglucanase [Ca 96.3 0.014 3.1E-07 67.0 9.4 118 58-190 66-193 (407)
35 PF14488 DUF4434: Domain of un 96.3 0.027 5.8E-07 56.9 10.3 135 55-220 15-158 (166)
36 PRK10150 beta-D-glucuronidase; 96.3 0.022 4.8E-07 68.6 11.3 75 474-554 62-137 (604)
37 PLN02998 beta-glucosidase 96.2 0.0054 1.2E-07 72.1 5.2 100 60-167 82-183 (497)
38 PRK09593 arb 6-phospho-beta-gl 96.2 0.0068 1.5E-07 71.0 5.9 100 60-167 73-175 (478)
39 PLN02814 beta-glucosidase 96.1 0.0061 1.3E-07 71.7 5.1 100 60-167 77-178 (504)
40 PRK13511 6-phospho-beta-galact 96.1 0.007 1.5E-07 70.8 5.5 97 60-164 54-151 (469)
41 PRK09589 celA 6-phospho-beta-g 96.1 0.0075 1.6E-07 70.6 5.5 100 60-167 67-169 (476)
42 TIGR01233 lacG 6-phospho-beta- 96.0 0.0086 1.9E-07 70.0 5.6 96 60-163 53-149 (467)
43 PF07745 Glyco_hydro_53: Glyco 95.9 0.023 5E-07 63.4 8.2 103 63-189 27-136 (332)
44 PRK10340 ebgA cryptic beta-D-g 95.9 0.031 6.7E-07 71.3 10.3 94 476-578 108-206 (1021)
45 PLN02849 beta-glucosidase 95.9 0.011 2.3E-07 69.8 5.6 100 60-167 79-180 (503)
46 PRK09525 lacZ beta-D-galactosi 95.7 0.052 1.1E-06 69.3 11.1 93 476-577 119-217 (1027)
47 PF14871 GHL6: Hypothetical gl 94.4 0.25 5.5E-06 48.1 9.4 98 64-166 4-123 (132)
48 COG2723 BglB Beta-glucosidase/ 94.3 0.065 1.4E-06 61.8 5.7 100 60-167 59-161 (460)
49 COG3867 Arabinogalactan endo-1 93.8 0.29 6.4E-06 53.2 9.2 117 61-190 64-183 (403)
50 PF02055 Glyco_hydro_30: O-Gly 93.7 0.48 1.1E-05 55.9 11.7 316 43-388 74-464 (496)
51 PRK09936 hypothetical protein; 93.6 0.23 5E-06 54.1 8.0 58 55-118 33-91 (296)
52 PF02638 DUF187: Glycosyl hydr 90.1 1.2 2.5E-05 49.6 8.8 118 58-186 17-162 (311)
53 smart00812 Alpha_L_fucos Alpha 89.9 38 0.00082 39.0 20.9 249 52-354 76-339 (384)
54 COG3934 Endo-beta-mannanase [C 89.9 0.23 5E-06 57.0 3.1 157 37-211 3-168 (587)
55 TIGR00542 hxl6Piso_put hexulos 89.8 3.5 7.5E-05 44.6 12.1 131 59-217 15-149 (279)
56 TIGR01515 branching_enzym alph 89.3 5 0.00011 48.9 14.0 72 50-121 142-228 (613)
57 smart00642 Aamy Alpha-amylase 89.1 0.98 2.1E-05 45.6 6.6 65 62-126 21-97 (166)
58 KOG2230 Predicted beta-mannosi 88.1 4.8 0.0001 47.5 11.8 150 35-224 327-494 (867)
59 PRK13210 putative L-xylulose 5 86.7 5.6 0.00012 42.8 11.2 131 60-217 16-149 (284)
60 PF01261 AP_endonuc_2: Xylose 84.4 2.7 5.8E-05 42.4 6.9 124 66-217 1-128 (213)
61 PLN02447 1,4-alpha-glucan-bran 84.1 15 0.00033 45.6 14.2 61 60-121 251-322 (758)
62 COG1649 Uncharacterized protei 83.9 4.1 8.9E-05 47.0 8.7 123 58-189 62-210 (418)
63 PRK14706 glycogen branching en 83.8 14 0.00031 45.2 13.9 53 67-119 175-237 (639)
64 PRK09441 cytoplasmic alpha-amy 83.2 1.9 4.1E-05 50.8 5.9 69 52-120 7-102 (479)
65 cd00019 AP2Ec AP endonuclease 83.0 17 0.00036 39.3 12.8 98 60-186 10-108 (279)
66 PRK12568 glycogen branching en 82.7 19 0.00041 44.7 14.2 59 65-126 275-346 (730)
67 PRK05402 glycogen branching en 82.0 15 0.00033 45.6 13.4 54 66-119 272-335 (726)
68 PF14307 Glyco_tran_WbsX: Glyc 82.0 12 0.00026 42.2 11.5 137 57-222 55-196 (345)
69 PRK01060 endonuclease IV; Prov 81.5 23 0.0005 38.2 13.2 95 62-184 14-110 (281)
70 PF13200 DUF4015: Putative gly 80.9 5.1 0.00011 44.8 7.8 111 58-169 11-136 (316)
71 PRK09856 fructoselysine 3-epim 79.6 32 0.0007 36.8 13.5 129 61-217 14-145 (275)
72 PRK13209 L-xylulose 5-phosphat 79.0 16 0.00034 39.5 10.9 130 61-217 22-154 (283)
73 PF11875 DUF3395: Domain of un 78.5 3.4 7.3E-05 41.3 5.0 69 762-831 55-134 (151)
74 TIGR02631 xylA_Arthro xylose i 78.2 33 0.00071 39.4 13.5 91 58-167 30-125 (382)
75 PF00128 Alpha-amylase: Alpha 77.6 2.4 5.2E-05 45.4 4.0 58 63-120 7-73 (316)
76 PRK14705 glycogen branching en 77.5 35 0.00076 44.8 14.7 55 65-119 771-835 (1224)
77 PF05913 DUF871: Bacterial pro 76.1 3.7 8E-05 46.6 5.1 71 48-124 2-72 (357)
78 PF01229 Glyco_hydro_39: Glyco 74.2 6.6 0.00014 46.3 6.8 69 49-120 28-105 (486)
79 TIGR02402 trehalose_TreZ malto 73.9 5.6 0.00012 47.7 6.1 53 64-119 115-180 (542)
80 PRK09989 hypothetical protein; 73.8 36 0.00079 36.3 11.8 43 61-117 16-58 (258)
81 PF14587 Glyco_hydr_30_2: O-Gl 73.5 20 0.00044 41.0 10.0 122 88-224 93-227 (384)
82 TIGR03234 OH-pyruv-isom hydrox 73.0 45 0.00098 35.3 12.2 43 61-117 15-57 (254)
83 TIGR00677 fadh2_euk methylenet 71.6 13 0.00028 40.8 7.8 109 45-168 129-251 (281)
84 PF08531 Bac_rhamnosid_N: Alph 71.4 5.9 0.00013 40.1 4.8 53 641-695 7-62 (172)
85 TIGR01531 glyc_debranch glycog 71.3 13 0.00028 48.8 8.6 114 36-155 103-236 (1464)
86 cd06593 GH31_xylosidase_YicI Y 68.8 9.2 0.0002 42.2 6.0 67 58-124 22-91 (308)
87 PRK12313 glycogen branching en 66.4 11 0.00023 46.2 6.4 55 66-120 177-241 (633)
88 KOG0626 Beta-glucosidase, lact 66.2 13 0.00027 44.1 6.5 99 61-167 92-194 (524)
89 PF03659 Glyco_hydro_71: Glyco 66.1 21 0.00045 41.1 8.3 53 58-119 15-67 (386)
90 PRK09997 hydroxypyruvate isome 66.1 70 0.0015 34.1 11.9 42 62-117 17-58 (258)
91 PLN02960 alpha-amylase 65.6 12 0.00026 46.9 6.6 56 64-119 421-486 (897)
92 smart00518 AP2Ec AP endonuclea 65.5 99 0.0022 33.1 13.0 93 62-184 12-105 (273)
93 TIGR02104 pulA_typeI pullulana 64.5 11 0.00024 45.7 6.1 55 64-119 168-249 (605)
94 cd04908 ACT_Bt0572_1 N-termina 64.3 25 0.00054 29.4 6.5 55 59-117 12-66 (66)
95 TIGR02403 trehalose_treC alpha 64.2 10 0.00022 45.5 5.5 58 62-121 29-97 (543)
96 PRK09505 malS alpha-amylase; R 64.0 13 0.00028 45.8 6.4 59 62-120 232-313 (683)
97 PF06832 BiPBP_C: Penicillin-B 63.8 11 0.00024 33.7 4.4 51 500-557 34-84 (89)
98 TIGR02456 treS_nterm trehalose 62.2 15 0.00033 43.9 6.6 55 62-119 30-96 (539)
99 PRK10785 maltodextrin glucosid 61.6 15 0.00033 44.6 6.4 57 63-119 182-246 (598)
100 PF02679 ComA: (2R)-phospho-3- 61.5 13 0.00028 40.1 5.1 52 59-120 83-134 (244)
101 COG0296 GlgB 1,4-alpha-glucan 60.3 14 0.00031 44.9 5.7 64 51-118 149-233 (628)
102 PF02065 Melibiase: Melibiase; 60.1 46 0.00099 38.5 9.6 90 52-141 50-148 (394)
103 KOG0496 Beta-galactosidase [Ca 59.7 2.4 5.2E-05 50.9 -0.8 59 752-810 331-389 (649)
104 cd06595 GH31_xylosidase_XylS-l 59.6 28 0.0006 38.3 7.5 71 52-122 14-97 (292)
105 PRK12677 xylose isomerase; Pro 59.5 2.1E+02 0.0045 33.0 14.8 89 61-167 32-124 (384)
106 PF08531 Bac_rhamnosid_N: Alph 59.4 36 0.00078 34.4 7.8 57 500-557 6-69 (172)
107 PRK10933 trehalose-6-phosphate 59.1 19 0.00042 43.3 6.6 56 62-120 35-102 (551)
108 PF11324 DUF3126: Protein of u 58.8 25 0.00054 30.1 5.3 32 505-536 24-57 (63)
109 cd06602 GH31_MGAM_SI_GAA This 57.4 76 0.0016 35.8 10.7 74 52-126 13-93 (339)
110 PF13199 Glyco_hydro_66: Glyco 55.2 2E+02 0.0043 34.9 14.1 79 60-138 118-211 (559)
111 PF02449 Glyco_hydro_42: Beta- 55.2 22 0.00048 40.4 6.0 137 198-346 210-372 (374)
112 cd06591 GH31_xylosidase_XylS X 55.1 21 0.00045 39.8 5.7 71 52-123 13-90 (319)
113 TIGR00676 fadh2 5,10-methylene 54.3 51 0.0011 35.9 8.4 109 45-168 125-247 (272)
114 PF08308 PEGA: PEGA domain; I 54.3 13 0.00028 31.6 3.1 47 501-559 3-49 (71)
115 KOG2024 Beta-Glucuronidase GUS 53.6 20 0.00043 39.0 4.8 61 462-523 70-133 (297)
116 PF01261 AP_endonuc_2: Xylose 52.9 84 0.0018 31.4 9.3 102 61-191 28-137 (213)
117 cd06592 GH31_glucosidase_KIAA1 52.8 29 0.00064 38.3 6.4 68 55-125 25-96 (303)
118 PF01791 DeoC: DeoC/LacD famil 52.5 6.7 0.00015 41.6 1.2 53 63-118 79-131 (236)
119 TIGR02401 trehalose_TreY malto 52.5 28 0.00061 43.7 6.6 66 58-123 14-89 (825)
120 PRK14510 putative bifunctional 49.9 24 0.00052 46.5 5.8 56 64-119 191-267 (1221)
121 PLN02361 alpha-amylase 49.0 36 0.00078 39.4 6.5 56 64-119 33-96 (401)
122 cd06589 GH31 The enzymes of gl 48.1 47 0.001 35.9 6.9 65 58-123 22-90 (265)
123 cd06416 GH25_Lys1-like Lys-1 i 47.9 47 0.001 34.1 6.5 89 49-140 55-158 (196)
124 cd06598 GH31_transferase_CtsZ 47.1 35 0.00077 38.0 5.9 67 58-124 22-95 (317)
125 PRK14511 maltooligosyl trehalo 46.9 39 0.00084 42.8 6.7 65 58-125 18-95 (879)
126 PRK14507 putative bifunctional 46.8 36 0.00078 46.0 6.7 62 58-122 756-830 (1693)
127 PF14683 CBM-like: Polysacchar 46.3 20 0.00044 36.3 3.5 49 646-695 91-149 (167)
128 cd06418 GH25_BacA-like BacA is 46.2 97 0.0021 32.7 8.6 90 57-168 49-139 (212)
129 PRK13398 3-deoxy-7-phosphohept 46.2 75 0.0016 34.7 8.0 80 31-119 16-98 (266)
130 TIGR02100 glgX_debranch glycog 45.8 30 0.00065 42.9 5.5 55 65-119 189-265 (688)
131 TIGR03849 arch_ComA phosphosul 45.4 43 0.00092 36.0 5.8 53 59-121 70-122 (237)
132 cd06603 GH31_GANC_GANAB_alpha 44.7 36 0.00078 38.3 5.5 74 52-126 13-91 (339)
133 COG3623 SgaU Putative L-xylulo 44.5 2E+02 0.0042 31.1 10.3 124 60-216 18-150 (287)
134 cd06601 GH31_lyase_GLase GLase 44.1 77 0.0017 35.7 8.0 72 52-124 13-89 (332)
135 COG1306 Uncharacterized conser 44.0 41 0.00089 37.2 5.4 59 58-119 75-144 (400)
136 TIGR02103 pullul_strch alpha-1 43.9 38 0.00082 43.1 6.0 21 99-119 404-424 (898)
137 cd06564 GH20_DspB_LnbB-like Gl 43.7 49 0.0011 37.0 6.3 154 36-217 3-196 (326)
138 PRK08673 3-deoxy-7-phosphohept 42.9 60 0.0013 36.7 6.8 80 31-119 82-164 (335)
139 cd06600 GH31_MGAM-like This fa 42.8 40 0.00087 37.5 5.5 73 52-125 13-90 (317)
140 PRK08645 bifunctional homocyst 42.2 83 0.0018 38.4 8.5 111 41-167 459-578 (612)
141 PF08924 DUF1906: Domain of un 41.9 73 0.0016 31.2 6.5 91 58-168 36-127 (136)
142 cd06545 GH18_3CO4_chitinase Th 41.2 1E+02 0.0022 33.0 8.1 97 89-214 35-132 (253)
143 PLN03059 beta-galactosidase; P 40.9 1.1E+02 0.0024 38.7 9.2 71 622-700 469-548 (840)
144 cd06599 GH31_glycosidase_Aec37 40.7 56 0.0012 36.4 6.2 65 60-124 29-98 (317)
145 cd02742 GH20_hexosaminidase Be 40.4 58 0.0013 36.0 6.3 59 58-119 14-92 (303)
146 TIGR02102 pullulan_Gpos pullul 40.0 51 0.0011 43.0 6.3 22 99-120 555-576 (1111)
147 cd06563 GH20_chitobiase-like T 39.8 1E+02 0.0022 34.9 8.2 72 35-119 3-106 (357)
148 KOG4729 Galactoside-binding le 39.7 37 0.00079 36.8 4.2 49 781-832 183-232 (265)
149 PF01055 Glyco_hydro_31: Glyco 39.5 43 0.00093 38.8 5.3 69 58-127 41-111 (441)
150 cd06565 GH20_GcnA-like Glycosy 39.5 1.3E+02 0.0029 33.3 8.8 60 58-120 15-81 (301)
151 PF14701 hDGE_amylase: glucano 38.6 1.1E+02 0.0025 35.6 8.3 105 53-167 13-143 (423)
152 PRK03705 glycogen debranching 38.6 49 0.0011 40.8 5.8 55 65-119 184-262 (658)
153 cd06568 GH20_SpHex_like A subg 38.1 57 0.0012 36.7 5.8 72 35-119 3-95 (329)
154 PF02228 Gag_p19: Major core p 37.4 15 0.00032 32.6 0.7 38 58-112 20-57 (92)
155 PLN02877 alpha-amylase/limit d 36.9 60 0.0013 41.6 6.2 21 99-119 466-486 (970)
156 cd06547 GH85_ENGase Endo-beta- 36.7 61 0.0013 36.7 5.7 114 77-221 33-148 (339)
157 cd06604 GH31_glucosidase_II_Ma 36.4 60 0.0013 36.4 5.7 73 52-125 13-90 (339)
158 PLN00196 alpha-amylase; Provis 36.4 75 0.0016 37.1 6.6 60 63-122 47-115 (428)
159 PF07691 PA14: PA14 domain; I 34.8 1.6E+02 0.0034 28.0 7.6 70 478-555 47-122 (145)
160 TIGR00433 bioB biotin syntheta 34.1 60 0.0013 35.3 5.1 52 63-117 123-176 (296)
161 cd00537 MTHFR Methylenetetrahy 33.9 89 0.0019 33.9 6.3 90 64-168 151-250 (274)
162 PRK09432 metF 5,10-methylenete 31.7 77 0.0017 35.1 5.4 88 65-168 168-266 (296)
163 COG5309 Exo-beta-1,3-glucanase 31.5 6.6E+02 0.014 27.8 12.0 120 58-225 61-180 (305)
164 cd06597 GH31_transferase_CtsY 31.3 90 0.002 35.2 6.0 73 52-124 13-110 (340)
165 COG0366 AmyA Glycosidases [Car 31.0 61 0.0013 37.6 4.8 56 64-119 33-97 (505)
166 PF12876 Cellulase-like: Sugar 31.0 83 0.0018 28.1 4.6 47 175-221 7-62 (88)
167 TIGR00587 nfo apurinic endonuc 30.3 3E+02 0.0066 29.8 9.7 83 63-167 14-98 (274)
168 KOG0259 Tyrosine aminotransfer 30.0 79 0.0017 36.3 5.0 85 30-118 152-238 (447)
169 cd06562 GH20_HexA_HexB-like Be 28.8 2.5E+02 0.0054 31.8 9.0 72 35-119 3-90 (348)
170 COG1735 Php Predicted metal-de 28.7 1.7E+02 0.0037 32.7 7.2 73 64-167 52-124 (316)
171 PRK14582 pgaB outer membrane N 27.9 2.1E+02 0.0046 35.5 8.7 111 60-188 334-468 (671)
172 cd07944 DRE_TIM_HOA_like 4-hyd 27.5 1.6E+02 0.0035 31.9 7.0 65 63-160 85-149 (266)
173 cd06570 GH20_chitobiase-like_1 27.3 1.9E+02 0.004 32.4 7.5 71 36-119 4-88 (311)
174 COG3589 Uncharacterized conser 27.1 1.2E+02 0.0026 34.3 5.8 72 48-126 4-76 (360)
175 PRK13209 L-xylulose 5-phosphat 27.1 2.3E+02 0.005 30.4 8.1 103 57-189 54-161 (283)
176 COG2884 FtsE Predicted ATPase 27.0 53 0.0012 34.5 2.9 25 639-663 42-70 (223)
177 PRK10076 pyruvate formate lyas 26.9 2.5E+02 0.0054 29.6 8.0 126 59-217 53-209 (213)
178 PRK06703 flavodoxin; Provision 26.3 2.9E+02 0.0064 26.8 8.0 98 40-167 46-148 (151)
179 cd01299 Met_dep_hydrolase_A Me 25.8 1.2E+02 0.0026 33.5 5.7 61 58-119 118-180 (342)
180 PLN02784 alpha-amylase 25.8 1.4E+02 0.003 37.9 6.6 56 63-119 524-588 (894)
181 cd04882 ACT_Bt0572_2 C-termina 25.6 1.4E+02 0.003 24.1 4.7 55 59-115 10-64 (65)
182 COG1082 IolE Sugar phosphate i 25.5 6.5E+02 0.014 26.5 11.1 51 58-117 13-63 (274)
183 PRK09267 flavodoxin FldA; Vali 25.3 5.2E+02 0.011 25.5 9.7 74 40-116 44-117 (169)
184 PRK09856 fructoselysine 3-epim 24.9 82 0.0018 33.7 4.1 55 61-119 91-149 (275)
185 COG1523 PulA Type II secretory 24.6 1.1E+02 0.0024 37.9 5.5 55 65-119 205-285 (697)
186 PLN02389 biotin synthase 24.6 98 0.0021 35.6 4.8 53 61-116 176-230 (379)
187 PRK12331 oxaloacetate decarbox 24.3 1.6E+02 0.0035 34.6 6.6 56 52-119 88-143 (448)
188 TIGR02455 TreS_stutzeri trehal 24.2 1.6E+02 0.0034 36.3 6.5 75 58-136 76-175 (688)
189 cd07943 DRE_TIM_HOA 4-hydroxy- 24.2 4.1E+02 0.009 28.6 9.3 45 63-119 88-132 (263)
190 PLN02540 methylenetetrahydrofo 24.1 1.9E+02 0.0041 35.2 7.1 89 65-168 161-259 (565)
191 KOG1065 Maltase glucoamylase a 24.0 1.2E+02 0.0025 38.1 5.4 69 52-125 300-377 (805)
192 TIGR01698 PUNP purine nucleoti 23.9 1E+02 0.0022 33.2 4.5 39 39-77 47-86 (237)
193 PRK13210 putative L-xylulose 5 23.9 95 0.0021 33.3 4.4 59 60-119 94-153 (284)
194 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.9 1.8E+02 0.0038 31.8 6.4 50 57-118 88-137 (275)
195 cd08560 GDPD_EcGlpQ_like_1 Gly 23.4 1.9E+02 0.0042 32.9 6.8 53 61-119 246-298 (356)
196 PF05763 DUF835: Protein of un 23.3 5.5E+02 0.012 25.2 9.1 105 91-216 1-113 (136)
197 PTZ00372 endonuclease 4-like p 23.1 3.5E+02 0.0075 31.6 8.8 84 36-120 149-240 (413)
198 PF00728 Glyco_hydro_20: Glyco 23.0 1.3E+02 0.0029 33.4 5.4 59 58-119 16-93 (351)
199 cd06415 GH25_Cpl1-like Cpl-1 l 23.0 3.4E+02 0.0073 27.9 8.0 43 99-141 108-157 (196)
200 PRK12858 tagatose 1,6-diphosph 22.9 1.1E+02 0.0024 34.7 4.7 62 56-119 102-163 (340)
201 smart00854 PGA_cap Bacterial c 22.8 6.7E+02 0.014 26.4 10.5 123 63-219 63-210 (239)
202 PRK00042 tpiA triosephosphate 22.6 1.5E+02 0.0032 32.2 5.4 51 64-120 77-127 (250)
203 TIGR02635 RhaI_grampos L-rhamn 22.5 8.5E+02 0.018 28.1 11.7 157 29-220 11-174 (378)
204 cd00311 TIM Triosephosphate is 22.4 1.6E+02 0.0035 31.7 5.7 50 65-120 76-125 (242)
205 PF01075 Glyco_transf_9: Glyco 22.3 58 0.0013 34.1 2.3 76 43-121 106-194 (247)
206 PRK10658 putative alpha-glucos 22.1 1.9E+02 0.0041 35.8 6.9 66 60-125 283-351 (665)
207 PRK07094 biotin synthase; Prov 21.9 79 0.0017 35.0 3.3 50 63-115 129-181 (323)
208 PTZ00372 endonuclease 4-like p 21.8 4.9E+02 0.011 30.4 9.7 90 63-184 144-239 (413)
209 PF01487 DHquinase_I: Type I 3 21.3 2.2E+02 0.0047 29.8 6.3 65 48-121 116-184 (224)
210 cd06525 GH25_Lyc-like Lyc mura 20.9 69 0.0015 32.6 2.4 43 99-141 103-149 (184)
211 KOG3833 Uncharacterized conser 20.8 98 0.0021 34.6 3.6 53 61-119 444-499 (505)
212 PF07009 DUF1312: Protein of u 20.7 4.6E+02 0.01 24.6 7.8 82 646-763 25-107 (113)
213 cd03789 GT1_LPS_heptosyltransf 20.6 1.2E+02 0.0027 32.4 4.4 80 43-125 122-213 (279)
214 cd06569 GH20_Sm-chitobiase-lik 20.6 1.7E+02 0.0037 34.4 5.8 74 33-119 5-117 (445)
215 PF04914 DltD_C: DltD C-termin 20.2 85 0.0018 30.6 2.7 28 99-127 36-63 (130)
216 TIGR03551 F420_cofH 7,8-dideme 20.1 82 0.0018 35.4 3.0 49 63-115 141-195 (343)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.5e-211 Score=1831.89 Aligned_cols=809 Identities=46% Similarity=0.879 Sum_probs=740.1
Q ss_pred hHHHHHHHHHHHhhhhccccCCceeeEEEeCCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 035496 5 SFLFLITTLLSLLASFAVADGNKTLGVTYDGRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWN 84 (833)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn 84 (833)
...||+..||-|+.+|-+.|. ..+|+||+++|+|||+|++|+||+|||||++|++|+|+|+||||+|+|||+||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn 83 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHG--SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 83 (840)
T ss_pred eehhhHHHHHHHhhhhhhccc--eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 345666677778888877776 357999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHH
Q 035496 85 IHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIK 164 (833)
Q Consensus 85 ~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~ 164 (833)
+|||+||+|||+|++||++||++|+|+||||||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|++
T Consensus 84 ~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~ 163 (840)
T PLN03059 84 GHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVD 163 (840)
T ss_pred ccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhhcCCCccceEEeccCCCCcccccccCCCccCCCC
Q 035496 165 KMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWVMCKQKDAPDPIINTCNGRYCGDTF 244 (833)
Q Consensus 165 ~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~ 244 (833)
+|+++++++++||||||+|||||||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+| +.|
T Consensus 164 ~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~-~~f 242 (840)
T PLN03059 164 MMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYC-ENF 242 (840)
T ss_pred HHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchh-hhc
Confidence 9998899999999999999999999976667778999999999999999999999999998888899999999888 677
Q ss_pred CCCCCCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeeeccCCCcCCCCC-CccccccCCCCCc
Q 035496 245 TGPNKPNKPSLWTENWTAQFRVYGDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFGRTSA-NFVTTRYYDEAPL 323 (833)
Q Consensus 245 ~~~~~~~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G-~~~~TSYDYdAPL 323 (833)
. +.++.+|+||||||+|||++||++++.|+++|++..+++||++|+|++||||||||||||||+| ++++|||||||||
T Consensus 243 ~-~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL 321 (840)
T PLN03059 243 K-PNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPL 321 (840)
T ss_pred c-cCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcc
Confidence 6 6667789999999999999999999999999999999999999999889999999999999999 6799999999999
Q ss_pred ccccCCCCC-ccHHHHHHHHHHHhhhhhccccCCCccccCCCcceeeEEecCCceEEEeecCCCcceeeEEecCeeeecC
Q 035496 324 DEFAVFAKG-PKWGHLKDLHRALKLCKKALLWGYPSVQKLGQDLEAIVYEGHGACAAFLSNNSTYMEKTISFRGRNYYLP 402 (833)
Q Consensus 324 ~E~G~~~~t-pKy~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~lp 402 (833)
+|+|+ .| |||.+||++|++++.++++|+..+|....+|+.+++.+|+..+.|++|+.|+++..+.+|.|+|++|.||
T Consensus 322 ~E~G~--~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp 399 (840)
T PLN03059 322 DEYGL--PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLP 399 (840)
T ss_pred ccccC--cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccC
Confidence 99999 56 7999999999999999888888888888899999999998733899999999988889999999999999
Q ss_pred CCceeccCCCcceeeeceeeeeeccccccccchhccccccccccccccc-cccccccccCCCCcccccCCCCCCccEEEE
Q 035496 403 SKSISILPDCQTVVYNTQTIVSQHNSRNFVPSVVANKRLSWDWETYTES-IPTFEQLENKATNPLELFNLTKDTTDYAWY 481 (833)
Q Consensus 403 ~~sv~i~~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~e~-~~~~~~~~~~~p~~mEql~~t~d~~GyllY 481 (833)
||||+|||||+.++|+|+++..|+..+++.+. ...+ .|+.+.|+ .+...+.++....++||++.|+|.+||+||
T Consensus 400 ~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~---~~~~--~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY 474 (840)
T PLN03059 400 PWSVSILPDCKTAVFNTARLGAQSSQMKMNPV---GSTF--SWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWY 474 (840)
T ss_pred ccceeecccccceeeeccccccccceeecccc---cccc--cceeecccccccccCCCcchhhHHHhhcccCCCCceEEE
Confidence 99999999999999999999988766544332 2344 79999998 443344566677788999999999999999
Q ss_pred EEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEeccCcccccc
Q 035496 482 SMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVVGFPDSGA 561 (833)
Q Consensus 482 rT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvNyG~ 561 (833)
||+|....++..++.+.+++|++.+++|++||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||+
T Consensus 475 ~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~ 554 (840)
T PLN03059 475 MTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGL 554 (840)
T ss_pred EEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCc
Confidence 99998776654456677889999999999999999999999998776667888888888899999999999999999999
Q ss_pred ccCCcccCce-EEEEcccccccccCccCCeEEeccccchhhhhhccCCCccccccccc--CCCCcceEEEEEEeCCCCCC
Q 035496 562 YMEKRFAGPH-RVEILGLNTGTLELTKNRWAHQVGLYGEEAKIFTLGGLNKVKWTKIE--GKRPALTWFKTYFDAPEGNH 638 (833)
Q Consensus 562 ~~~~~~KGI~-~V~l~g~~~~~~dL~~~~W~~~l~L~~e~~~~~~~~~~~~~~w~~~~--~~~~~p~fYk~tF~~p~~~d 638 (833)
+|+++.|||+ +|+|+|.+++..||+++.|.|+++|+||.++++.++....++|.+.. +...+|+|||++|++|++.|
T Consensus 555 ~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~D 634 (840)
T PLN03059 555 HFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGND 634 (840)
T ss_pred ccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCC
Confidence 9999999999 99999988888899988999999999999999887555678897653 33467999999999999999
Q ss_pred CeEEEeCCCceEEEEECCeeeeeeeeccC--------------------CCCCCCceeeeecCcCcccCCccEEEEEeee
Q 035496 639 PIAIQMNRMGKGMIWINGQSIGRYWISYL--------------------SPLGQPTQSEYHIPRSYLKPTGNLMVILEEE 698 (833)
Q Consensus 639 ~~fLd~~g~gKG~vwVNG~nLGRYW~~~~--------------------~~~~GPQqtlYhVP~~~Lk~G~N~IvVfeEe 698 (833)
||||||+|||||+|||||+||||||+.+. .+|+||||||||||++|||+|+|+|||| ||
T Consensus 635 pv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViF-Ee 713 (840)
T PLN03059 635 PLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVF-EE 713 (840)
T ss_pred CEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEE-Ee
Confidence 99999999999999999999999996411 3589999999999999999999999999 68
Q ss_pred ccCCCceEEEEeeeccccccccccCCCCCcccccccCCccccccccCCCceEEeCCCCCeEEEEEeeecCCCCCcCCCcc
Q 035496 699 EEARPEEIKFVVVDRDTICSYISDIHPPPVQSWGSKNNVSEYTANNRKASAVLTCPDFKVITNVQFASYGDSIGICGGYQ 778 (833)
Q Consensus 699 ~~~~p~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~yGr~~~~C~~~~ 778 (833)
++++|..|+|+++.+++||++++|+|| ++++|++.... .+++..+.++|+|+.|++|++|+||+||||.++|++++
T Consensus 714 ~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~---~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~ 789 (840)
T PLN03059 714 WGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASG---KVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFR 789 (840)
T ss_pred cCCCCCceEEEEeecCcccccccccCC-ccccccccccc---cccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCC
Confidence 899999999999999999999999995 69999994322 24678899999999999998899999999999999999
Q ss_pred ccceecCChhHHHHhhcCCCCcceEeeccccccCCCCCCCCcceEEEEEEEEe
Q 035496 779 YGNCNAQDTKEVVERFCLGKHTCQIPFEKELLIRNWDPCPNVKKSLAVQVKCG 831 (833)
Q Consensus 779 ~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F~~g~DPC~gt~KyL~V~y~C~ 831 (833)
+++|++++|+++|+++|+||++|+|.+++.+| |+|||+||+|||+|+|.|.
T Consensus 790 ~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~F--ggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 790 EGSCHAHKSYDAFERNCIGKQSCSVTVAPEVF--GGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCEeCCcHHHHHHHHCCCCCceEEEecccee--cCCCCCCceeEEEEEEEeC
Confidence 99999999999999999999999999999999 8899999999999999995
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-152 Score=1286.98 Aligned_cols=629 Identities=52% Similarity=0.960 Sum_probs=576.6
Q ss_pred eeeEEEeCCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHH
Q 035496 28 TLGVTYDGRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKM 107 (833)
Q Consensus 28 ~~~v~~d~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~ 107 (833)
.+.|+||+++|.|||+|++++||++||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccc
Q 035496 108 IGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENE 187 (833)
Q Consensus 108 a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 187 (833)
|+++||+||||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++++| +|++++||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred ccchhhhhccccHHHHHHHHHHhhcCCCccceEEeccCCCCcccccccCCCccCCCCCCCCCCCCCcccccccccccccc
Q 035496 188 YSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWVMCKQKDAPDPIINTCNGRYCGDTFTGPNKPNKPSLWTENWTAQFRVY 267 (833)
Q Consensus 188 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~W 267 (833)
||.+...|++..++|++|-..|+...+.+|||+||.+.|+++.++++|||++|.+.|..+++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887788889999999999999999999999999999999999999999999999987999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCeeeeeeeeccCCCcCCCCCCccccccCCCCCcccccCCCCCccHHHHHHHHHHHhh
Q 035496 268 GDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFGRTSANFVTTRYYDEAPLDEFAVFAKGPKWGHLKDLHRALKL 347 (833)
Q Consensus 268 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~TSYDYdAPL~E~G~~~~tpKy~~lr~l~~~l~~ 347 (833)
|++++.|++|+++..+++|+++|+|++||||||||||||+|||++.+|||||||||| |. ..+|||.|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl-~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GL-LRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hh-hcCCCccccccchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999 77 789999999999999999
Q ss_pred hhhccccCCCccccCCCcceeeEEecCCceEEEeecCCCcceeeEEecCeeeecCCCceeccCCCcceeeeceeeeeecc
Q 035496 348 CKKALLWGYPSVQKLGQDLEAIVYEGHGACAAFLSNNSTYMEKTISFRGRNYYLPSKSISILPDCQTVVYNTQTIVSQHN 427 (833)
Q Consensus 348 ~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~lp~~sv~i~~~~~~v~~~t~~~~~~~~ 427 (833)
+++.+..+++....+++.. +.|.+|+.|++....+.+.|++..|.+|+++++|+|+|++++|+|+++..+
T Consensus 332 ~ep~lv~gd~~~~kyg~~~--------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLR--------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccchh--------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 9988887775554444443 459999999999888999999999999999999999999999999865432
Q ss_pred ccccccchhccccccccccccccccccccccccCCCCcccccCCCCCCccEEEEEEEecCCCCCccCCCCCCCeEEeC-C
Q 035496 428 SRNFVPSVVANKRLSWDWETYTESIPTFEQLENKATNPLELFNLTKDTTDYAWYSMIITLGRGDLPMRANASPVLIVA-S 506 (833)
Q Consensus 428 ~~~~~~~~~~~~~l~~~w~~~~e~~~~~~~~~~~~p~~mEql~~t~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~-~ 506 (833)
|....| |.++|..++ .+||++|++.++.+.++ ...|+|. +
T Consensus 402 -----------------~~~~~e------------~~~~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~i~ls 442 (649)
T KOG0496|consen 402 -----------------WISFTE------------PIPSEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLKIPLS 442 (649)
T ss_pred -----------------cccccC------------CCccccccC---cceEEEEEEeeccccCC-------CceEeeccc
Confidence 333333 345666654 68899999998766544 2568888 9
Q ss_pred cceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEeccCccccccccCCcccCce-EEEEcccccccccC
Q 035496 507 LGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVVGFPDSGAYMEKRFAGPH-RVEILGLNTGTLEL 585 (833)
Q Consensus 507 ~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvNyG~~~~~~~KGI~-~V~l~g~~~~~~dL 585 (833)
++|++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+ +|+|+|. +|+
T Consensus 443 ~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l 517 (649)
T KOG0496|consen 443 LGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDL 517 (649)
T ss_pred ccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecc
Confidence 999999999999999999987666677788888999999999999999999999 8889999999 9999997 478
Q ss_pred ccCCeEEeccccchhhhhhccCCCccccccccc--CCCCcceEEEEEEeCCCCCCCeEEEeCCCceEEEEECCeeeeeee
Q 035496 586 TKNRWAHQVGLYGEEAKIFTLGGLNKVKWTKIE--GKRPALTWFKTYFDAPEGNHPIAIQMNRMGKGMIWINGQSIGRYW 663 (833)
Q Consensus 586 ~~~~W~~~l~L~~e~~~~~~~~~~~~~~w~~~~--~~~~~p~fYk~tF~~p~~~d~~fLd~~g~gKG~vwVNG~nLGRYW 663 (833)
++++|.|+++|.+|.+.+|++....+++|.... +..+|.+||+ +|++|++.+||||||.|||||+|||||+||||||
T Consensus 518 ~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW 596 (649)
T KOG0496|consen 518 TWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYW 596 (649)
T ss_pred ceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCccccccc
Confidence 888899999999999999999887889998654 2336778888 9999999999999999999999999999999999
Q ss_pred eccCCCCCCCceeeeecCcCcccCCccEEEEEeeeccCCCceEEEEeeeccccccccccC
Q 035496 664 ISYLSPLGQPTQSEYHIPRSYLKPTGNLMVILEEEEEARPEEIKFVVVDRDTICSYISDI 723 (833)
Q Consensus 664 ~~~~~~~~GPQqtlYhVP~~~Lk~G~N~IvVfeEe~~~~p~~I~~~~~~~~~~~~~~~~~ 723 (833)
+++ |||+++| ||++|||++.|+|||| ||++++|..|+|+++.+..+|..+.|+
T Consensus 597 ~~~-----G~Q~~yh-vPr~~Lk~~~N~lvvf-Eee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 597 PSF-----GPQRTYH-VPRSWLKPSGNLLVVF-EEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred CCC-----CCceEEE-CcHHHhCcCCceEEEE-EeccCCCccceEEEeEeeeEeeecccC
Confidence 985 9976666 9999999999999999 677799999999999888999988763
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=7e-89 Score=744.95 Aligned_cols=298 Identities=38% Similarity=0.705 Sum_probs=229.8
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 035496 37 SLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS 116 (833)
Q Consensus 37 ~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi 116 (833)
+|+|||||++++|||+||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhc
Q 035496 117 LRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYR 196 (833)
Q Consensus 117 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 196 (833)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999943
Q ss_pred cccHHHHHHHHHHhhcCCCc-cceEEeccCC--------CCcccccccCCCccCCC----CC--CCCCCCCCcccccccc
Q 035496 197 EKGNKYVQWTGNLAVGMNIG-VPWVMCKQKD--------APDPIINTCNGRYCGDT----FT--GPNKPNKPSLWTENWT 261 (833)
Q Consensus 197 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~~----~~--~~~~~~~P~~~~E~~~ 261 (833)
.++++||+.|++++++.|++ +++++++... .++..+.+++++.|.+. +. ...+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 38999999999999999998 6677776432 12222334444555332 10 1346889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeeeccCCCcCCCCCCcc-----ccccCCCCCcccccCCCCCccHH
Q 035496 262 AQFRVYGDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFGRTSANFV-----TTRYYDEAPLDEFAVFAKGPKWG 336 (833)
Q Consensus 262 Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~-----~TSYDYdAPL~E~G~~~~tpKy~ 336 (833)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|+.. +|||||+|||+|+|+ .+|||.
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~--~~~Ky~ 310 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQ--LTPKYY 310 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS---B-HHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCC--cCHHHH
Confidence 9999999999999999999999999999966 89999999999999999543 499999999999999 789999
Q ss_pred HHHHHHHH
Q 035496 337 HLKDLHRA 344 (833)
Q Consensus 337 ~lr~l~~~ 344 (833)
+||+||++
T Consensus 311 ~lr~l~~~ 318 (319)
T PF01301_consen 311 ELRRLHQK 318 (319)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999974
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-40 Score=384.28 Aligned_cols=288 Identities=22% Similarity=0.305 Sum_probs=218.3
Q ss_pred EEEeCCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEE-eeeCCccCCcCCeeeecCchhHHHHHHHHH
Q 035496 31 VTYDGRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQT-YVFWNIHEPVQGQYNFQGQYDLVKFIKMIG 109 (833)
Q Consensus 31 v~~d~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~ 109 (833)
|.+++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCCEEEeecCc-ccccccCCCCCCceecccCCeEec---------CCChhHHHHHHHHHHHHHHHhhhcccccccCCce
Q 035496 110 EHGMYASLRLGP-FIQAEWNHGGLPYWLREVQNITFR---------SDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPI 179 (833)
Q Consensus 110 ~~gL~Vilr~GP-yicaEw~~GG~P~WL~~~p~~~~R---------~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 179 (833)
+.||+||||||| ..|.+|..++.|+||..++.-..| .+++.|++++++++.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999887653333 346779998888655555553 4789999
Q ss_pred EEecccccccchhhhhccccHHHHHHHHHHhhcC-CCccceEEeccC-CCCc-ccccccC-----CCccC-CCCCCCCCC
Q 035496 180 ILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGM-NIGVPWVMCKQK-DAPD-PIINTCN-----GRYCG-DTFTGPNKP 250 (833)
Q Consensus 180 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~~-~~~~~~n-----g~~~~-~~~~~~~~~ 250 (833)
|+||+|||||++.|.++.|.+.|..||++.+-.. .+.-+|=+..-+ +..+ ..+.+-+ +.... -+|. ....
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~-~f~~ 231 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYR-RFES 231 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHh-hhhh
Confidence 9999999999966667779999999999998421 122233221100 0000 0111111 00000 0111 1223
Q ss_pred CC----Cccccccccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCeeeeeeeeccCCCcC------CCCC-C---c--
Q 035496 251 NK----PSLWTENWTAQF-RVYGDPPSQRS-VEDLAFSTARFISRNGTLINYYMYHGGTNFG------RTSA-N---F-- 312 (833)
Q Consensus 251 ~~----P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G-~---~-- 312 (833)
.+ +....|.|-+|| +.|..++-... .+.-++.+++.|..+.+ -||||||+|++|+ +.+| . +
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 33 667788888999 88877665444 44445566677777666 7999999999999 6666 2 2
Q ss_pred -----cccccCCCCCcccccC
Q 035496 313 -----VTTRYYDEAPLDEFAV 328 (833)
Q Consensus 313 -----~~TSYDYdAPL~E~G~ 328 (833)
..|+|++++.+.+.|.
T Consensus 311 me~~P~~vn~~~~n~~~~~G~ 331 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGA 331 (673)
T ss_pred ccCCcchhhhhhccCCCCCcc
Confidence 5899999999999997
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=4.8e-21 Score=215.08 Aligned_cols=144 Identities=19% Similarity=0.331 Sum_probs=114.5
Q ss_pred EeeCCCCCcccHHHHHHHHHHcCCCEEEE-eeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCC
Q 035496 51 SIHYTRSTPDMWPDLIQKAKRGGLNVIQT-YVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNH 129 (833)
Q Consensus 51 ~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~ 129 (833)
+++|.+++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||+++ .
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------c
Confidence 46788999999999999999999999997 56799999999999999 899999999999999999974 6
Q ss_pred CCCCceecc-cCCeEe----------------cCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchh
Q 035496 130 GGLPYWLRE-VQNITF----------------RSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQ 192 (833)
Q Consensus 130 GG~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~ 192 (833)
+..|.||.+ +|++.. ..++|.|++++++++++|++++++ +..||+|||+||++...
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~ 142 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHR 142 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCc
Confidence 779999976 787632 134789999999999999998885 45899999999999743
Q ss_pred hhhccccHHHHHHHHHHhhc
Q 035496 193 LAYREKGNKYVQWTGNLAVG 212 (833)
Q Consensus 193 ~~~~~~~~~y~~~l~~~~~~ 212 (833)
+.+..+.++|.+||+++|..
T Consensus 143 ~~~~~~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGT 162 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 33445888999999999964
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.79 E-value=6.8e-20 Score=161.66 Aligned_cols=76 Identities=38% Similarity=0.798 Sum_probs=61.0
Q ss_pred EeCCCCCeEEEEEeeecCCCC-CcCCCcc---ccceecCChhHHHHhhcCCCCcceEeeccccccCCCCCCCCcceEEEE
Q 035496 751 LTCPDFKVITNVQFASYGDSI-GICGGYQ---YGNCNAQDTKEVVERFCLGKHTCQIPFEKELLIRNWDPCPNVKKSLAV 826 (833)
Q Consensus 751 L~C~~g~~I~~I~~A~yGr~~-~~C~~~~---~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F~~g~DPC~gt~KyL~V 826 (833)
|+|++|++| .|.+|+|||+. .+|++.. ..+|++++++++|+++|+||++|+|.+++.+| | ||||||+|||+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f--~-dpC~~~~KyL~V 76 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVF--G-DPCPGTSKYLEV 76 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH-----SSTTS--EEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCcc--C-CCCCCCCeEEEE
Confidence 799999766 69999999976 5897433 46899999999999999999999999999999 8 999999999999
Q ss_pred EEEE
Q 035496 827 QVKC 830 (833)
Q Consensus 827 ~y~C 830 (833)
+|+|
T Consensus 77 ~Y~C 80 (80)
T PF02140_consen 77 TYTC 80 (80)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.75 E-value=1.4e-18 Score=179.70 Aligned_cols=86 Identities=29% Similarity=0.516 Sum_probs=78.3
Q ss_pred cCCCceEEeCCCCCeEEEEEeeecCCCC-CcCCC--c--cccceecCChhHHHHhhcCCCCcceEeeccccccCCCCCCC
Q 035496 744 NRKASAVLTCPDFKVITNVQFASYGDSI-GICGG--Y--QYGNCNAQDTKEVVERFCLGKHTCQIPFEKELLIRNWDPCP 818 (833)
Q Consensus 744 ~~~~~~~L~C~~g~~I~~I~~A~yGr~~-~~C~~--~--~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F~~g~DPC~ 818 (833)
=+|+.++|+||.|.+|+ |+.|+|||.. ..|.. + -+.+|..+.|+.++.++|++|+.|.|.|..++| |+||||
T Consensus 41 CdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F--~~DPCP 117 (265)
T KOG4729|consen 41 CDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVF--GDDPCP 117 (265)
T ss_pred ecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCcc--CCCCCC
Confidence 57889999999999995 9999999954 68953 2 268999999999999999999999999999999 889999
Q ss_pred CcceEEEEEEEEec
Q 035496 819 NVKKSLAVQVKCGF 832 (833)
Q Consensus 819 gt~KyL~V~y~C~~ 832 (833)
||+|||+|+|.|++
T Consensus 118 gT~KYLev~Y~Cvp 131 (265)
T KOG4729|consen 118 GTSKYLEVQYGCVP 131 (265)
T ss_pred CchhheEEEeccCc
Confidence 99999999999985
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.06 E-value=5.2e-09 Score=114.30 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=106.2
Q ss_pred EEEeCCeEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHH
Q 035496 31 VTYDGRSLIINGKREILFSGSIHYTR------STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKF 104 (833)
Q Consensus 31 v~~d~~~~~i~G~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 104 (833)
|.+.++.|+|||||++|-+...|... .+++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999654 37888999999999999999999 33332 1689
Q ss_pred HHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecc
Q 035496 105 IKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQI 184 (833)
Q Consensus 105 l~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (833)
+++|-+.||.|+.-+.=.-++.|..-|.. .....|+.+.+.+.+-+++++++.+. +..||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~N-------HPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDRN-------HPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCcC-------cCchheeec
Confidence 99999999999976521011122211111 24567899999998888888888875 459999999
Q ss_pred cccccchhhhhccccHHHHHHHHHHhhcCCCccceEEe
Q 035496 185 ENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWVMC 222 (833)
Q Consensus 185 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 222 (833)
-||-. ...+++.|.+++++..-+=|+...
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeec
Confidence 99993 246778888888876655565443
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.02 E-value=5.2e-10 Score=105.04 Aligned_cols=69 Identities=22% Similarity=0.568 Sum_probs=51.6
Q ss_pred CCcceEEEEEEeCCCCCCCeE-EEe--CCCceEEEEECCeeeeeeeeccCCCCCCCceeeeecCcCcccCCccEEEEE
Q 035496 621 RPALTWFKTYFDAPEGNHPIA-IQM--NRMGKGMIWINGQSIGRYWISYLSPLGQPTQSEYHIPRSYLKPTGNLMVIL 695 (833)
Q Consensus 621 ~~~p~fYk~tF~~p~~~d~~f-Ld~--~g~gKG~vwVNG~nLGRYW~~~~~~~~GPQqtlYhVP~~~Lk~G~N~IvVf 695 (833)
..+..|||++|+.......+. |.. ....+++|||||++|||||+. +|||++++ ||+++|+.++|.|+|+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----~g~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----IGPQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----TECCEEEE-E-BTTBTTCEEEEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----CCccEEEE-eCceeecCCCEEEEEE
Confidence 457899999996422111223 333 467899999999999999966 59999999 9999999885565565
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.89 E-value=1.7e-07 Score=112.27 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=110.1
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHH
Q 035496 29 LGVTYDGRSLIINGKREILFSGSIHYTR------STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLV 102 (833)
Q Consensus 29 ~~v~~d~~~~~i~G~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 102 (833)
.+|++++..|+|||+|+++-+...|... .+++.|+.+|+.||++|+|+|++. |-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCC-----------CH
Confidence 3478889999999999999999888543 467789999999999999999992 4332 15
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceec-------c-cCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccc
Q 035496 103 KFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR-------E-VQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFAS 174 (833)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~ 174 (833)
+|+++|-+.||+|+--.. .-|+..|+. + .+....-..+|.+.++..+-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999997642 112222221 1 11111113456677766666666666665
Q ss_pred cCCceEEecccccccchhhhhccccHHHHHHHHHHhhcCCCccceEE
Q 035496 175 QGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWVM 221 (833)
Q Consensus 175 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 221 (833)
|+..||||-|-||.... ......|++.|.+.+++..-+=|+..
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~ 447 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTC 447 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEE
Confidence 55699999999997532 11345777888888888666555544
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.80 E-value=6.4e-08 Score=103.31 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=110.8
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccC-CcCCe-eeecCchhHHHHHHHHHHcCCEEEee
Q 035496 41 NGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHE-PVQGQ-YNFQGQYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 41 ~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~dF~g~~dl~~fl~~a~~~gL~Vilr 118 (833)
+|+++.+.+-+.|+.. +..-++.+++||++|+|+||+.+.|...+ |.|+. ++=+....|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 12778999999999999999999995544 77764 66667779999999999999999987
Q ss_pred cCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhh---
Q 035496 119 LGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAY--- 195 (833)
Q Consensus 119 ~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~--- 195 (833)
+-. .|.|...... -...+...+...++.+.|+++++. ..+|++++|=||........
T Consensus 82 ~h~----------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LHN----------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EEE----------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ecc----------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 621 1777432111 112233344445566667666653 44799999999998642100
Q ss_pred --c-cccHHHHHHHHHHhhcCCCccceEEec
Q 035496 196 --R-EKGNKYVQWTGNLAVGMNIGVPWVMCK 223 (833)
Q Consensus 196 --~-~~~~~y~~~l~~~~~~~g~~vp~~~~~ 223 (833)
. ..-.++++.+.+..|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 112456667777778888886666543
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.52 E-value=4.7e-07 Score=85.13 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=57.3
Q ss_pred ccccCCCCCCccEEEEEEEecCCCCCccCCCCCCCe-EEe-CCcceEEEEEECCEEEEEEecccCCceeEEEeccc-cCC
Q 035496 466 LELFNLTKDTTDYAWYSMIITLGRGDLPMRANASPV-LIV-ASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIK-LKE 542 (833)
Q Consensus 466 mEql~~t~d~~GyllYrT~i~~~~~~~~~~~~~~~~-L~v-~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~-l~~ 542 (833)
.+..+..++..|++|||++|...+.+. ... |.+ .+.+++++|||||+++|....... ...+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 444555567899999999997543221 223 444 478999999999999999873221 2245555542 566
Q ss_pred CCcEEEEEEeccCc
Q 035496 543 GPNHIQILGSVVGF 556 (833)
Q Consensus 543 g~~~L~ILvEn~Gr 556 (833)
++++|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 13
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2.2e-06 Score=104.59 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=105.9
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEeeCCCC------CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHH
Q 035496 29 LGVTYDGRSLIINGKREILFSGSIHYTRS------TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLV 102 (833)
Q Consensus 29 ~~v~~d~~~~~i~G~~~~~~sG~~Hy~r~------~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~ 102 (833)
.+|+++...|.|||||+++-+..-|.+-. .++.-+++|++||++|+|+|+|- |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 34888888999999999999999997653 34447899999999999999997 55543 6
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEe
Q 035496 103 KFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILV 182 (833)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 182 (833)
.|+++|-+.||+||--+ ..||.. .| +|+.|++.+..=+++++++.+. +..||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~kn-------HPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRN-------HPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccC-------CCcEEEE
Confidence 89999999999999886 223322 22 7888999888878888888774 4599999
Q ss_pred cccccccchhhhhccccHHHHHHHHHHhhc
Q 035496 183 QIENEYSTIQLAYREKGNKYVQWTGNLAVG 212 (833)
Q Consensus 183 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 212 (833)
=+-||-|. +.....-..|.++.-..
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d~~ 426 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASDPT 426 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcCCc
Confidence 99999884 33444555666665543
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.42 E-value=3e-06 Score=106.77 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=101.5
Q ss_pred eEEEeCCeEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHH
Q 035496 30 GVTYDGRSLIINGKREILFSGSIHYTR------STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVK 103 (833)
Q Consensus 30 ~v~~d~~~~~i~G~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 103 (833)
+|+++++.|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++. |-|. =.+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DPR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CHH
Confidence 367788899999999999999988432 377889999999999999999983 4332 248
Q ss_pred HHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEec
Q 035496 104 FIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQ 183 (833)
Q Consensus 104 fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 183 (833)
|+++|-+.||+|+--. |..|..|.. .. +...-+++|.|.++..+=+++++.+.+ |+..||||=
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~-------~~--~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFAN-------VG--DISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccc-------cc--ccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEE
Confidence 9999999999999765 222221211 00 001124677777655444556666555 566999999
Q ss_pred ccccccchhhhhccccHHHHHHHHHHhhcCCCccce
Q 035496 184 IENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPW 219 (833)
Q Consensus 184 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~ 219 (833)
+-||-+. + . .++.+.+.+++..-+=|+
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v 472 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLV 472 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceE
Confidence 9999863 2 1 235666666665444343
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.41 E-value=3.7e-06 Score=105.91 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=101.9
Q ss_pred eEEEeCCeEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHH
Q 035496 30 GVTYDGRSLIINGKREILFSGSIHYT------RSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVK 103 (833)
Q Consensus 30 ~v~~d~~~~~i~G~~~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~ 103 (833)
+|++++..|+|||+|+++-+...|.. +++++.++++|+.||++|+|+|++- |-|. =.+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----------~p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCS-----HYPN-----------HPL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CHH
Confidence 36778889999999999999999843 3588889999999999999999992 4332 158
Q ss_pred HHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEec
Q 035496 104 FIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQ 183 (833)
Q Consensus 104 fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 183 (833)
|+++|-+.||+|+--.. . | ..|-.|.. . -.+||.|++++.+=+++++.+.+ |+..||||=
T Consensus 399 fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEe
Confidence 99999999999997752 1 1 11111210 0 14577887776655666666665 566999999
Q ss_pred ccccccchhhhhccccHHHHHHHHHHhhcCCCccceEE
Q 035496 184 IENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWVM 221 (833)
Q Consensus 184 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 221 (833)
+-||-+. +. ..+.+.+.+++..-+=|+..
T Consensus 459 lgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y 487 (1027)
T PRK09525 459 LGNESGH-----GA----NHDALYRWIKSNDPSRPVQY 487 (1027)
T ss_pred CccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEE
Confidence 9999763 21 23455555555444445443
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.03 E-value=1.6e-05 Score=85.25 Aligned_cols=116 Identities=20% Similarity=0.399 Sum_probs=87.8
Q ss_pred CCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHH
Q 035496 83 WNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMI 162 (833)
Q Consensus 83 Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 162 (833)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 333222 433 6899987532 345577888899999
Q ss_pred HHHhhhcccccccCCceEEecccccccchh-------hhhccccHHHHHHHHHHhhcCCCccceEEec
Q 035496 163 IKKMKDEKLFASQGGPIILVQIENEYSTIQ-------LAYREKGNKYVQWTGNLAVGMNIGVPWVMCK 223 (833)
Q Consensus 163 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 223 (833)
+.+++ |.|..|+|=||--... ..+...+.+|+...-+.+++...++.+++++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88876 4688999999954311 0111234578888888999888888888875
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.99 E-value=3.2e-05 Score=77.00 Aligned_cols=98 Identities=24% Similarity=0.242 Sum_probs=68.4
Q ss_pred CCCccEEEEEEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCC-cEEEEEE
Q 035496 473 KDTTDYAWYSMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGP-NHIQILG 551 (833)
Q Consensus 473 ~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 551 (833)
....|+.|||++|.++.+. .+....|.+.++.+.+.|||||+++|...+... .+.++++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEEE
Confidence 3468999999999876532 134567889999999999999999999875432 35566655688886 9999999
Q ss_pred eccCcccccccc-CCcccCce-EEEEc
Q 035496 552 SVVGFPDSGAYM-EKRFAGPH-RVEIL 576 (833)
Q Consensus 552 En~GrvNyG~~~-~~~~KGI~-~V~l~ 576 (833)
.+...-.+-+.+ .....||. +|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865544331111 12357998 88873
No 18
>PLN02705 beta-amylase
Probab=97.85 E-value=4.6e-05 Score=88.21 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCE--EEeecCcccccccCCC----
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMY--ASLRLGPFIQAEWNHG---- 130 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (833)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.+|+++.||+ |||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3455688999999999999999999999998 799999995 67789999999999 55665 33443 222
Q ss_pred -CCCceecc----cCCeEe
Q 035496 131 -GLPYWLRE----VQNITF 144 (833)
Q Consensus 131 -G~P~WL~~----~p~~~~ 144 (833)
-||.|+.+ +|+|.+
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 38999985 577754
No 19
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.82 E-value=0.00025 Score=77.42 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=85.2
Q ss_pred eeEEEeCCeEE--ECCEEeEEEEEEeeCCCC-----------CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeee
Q 035496 29 LGVTYDGRSLI--INGKREILFSGSIHYTRS-----------TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNF 95 (833)
Q Consensus 29 ~~v~~d~~~~~--i~G~~~~~~sG~~Hy~r~-----------~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF 95 (833)
..|++.++.|+ .+|++|+|.+-.+.+--. .++.|+.++..||++|+|||++|-.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------- 75 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------- 75 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---------------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe-------------
Confidence 44888899898 789999998887765433 4578999999999999999999843
Q ss_pred cCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCCh--hHHH-HHHHHHHHHHHHhhhcccc
Q 035496 96 QGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNE--PFKY-HMKKYVTMIIKKMKDEKLF 172 (833)
Q Consensus 96 ~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~--~y~~-~~~~~~~~l~~~l~~~~~~ 172 (833)
+-..|-++++++.++.|||||+--+. |...+-..+| .|-. ..++| .+++..++++
T Consensus 76 dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~-~~vid~fa~Y--- 133 (314)
T PF03198_consen 76 DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRY-FAVIDAFAKY--- 133 (314)
T ss_dssp -TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHH-HHHHHHHTT----
T ss_pred CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHH-HHHHHHhccC---
Confidence 22347899999999999999998642 2222344455 4432 23333 3445555643
Q ss_pred cccCCceEEecccccccchhh--hhccccHHHHHHHHHHhhcCCC-ccce
Q 035496 173 ASQGGPIILVQIENEYSTIQL--AYREKGNKYVQWTGNLAVGMNI-GVPW 219 (833)
Q Consensus 173 ~~~gGpII~~QiENEyg~~~~--~~~~~~~~y~~~l~~~~~~~g~-~vp~ 219 (833)
.++++.=+-||--.-.. .-.+.-|+..+-+|+-.++.+. .+|+
T Consensus 134 ----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 38999999999864211 0112345566666666666666 4565
No 20
>PLN02905 beta-amylase
Probab=97.79 E-value=7.4e-05 Score=86.80 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=63.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCE--EEeecCcccccccCCC-----C
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMY--ASLRLGPFIQAEWNHG-----G 131 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G-----G 131 (833)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.+|+++.||+ |||.+ --|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34577899999999999999999999998 899999995 67789999999999 45655 33443 122 3
Q ss_pred CCceecc----cCCeEe
Q 035496 132 LPYWLRE----VQNITF 144 (833)
Q Consensus 132 ~P~WL~~----~p~~~~ 144 (833)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 677754
No 21
>PLN02801 beta-amylase
Probab=97.74 E-value=9.8e-05 Score=84.47 Aligned_cols=81 Identities=19% Similarity=0.452 Sum_probs=64.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EeecCcccccccCCC----
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMYA--SLRLGPFIQAEWNHG---- 130 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~G---- 130 (833)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..++.++++++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 699999995 677899999999994 5655 33433 112
Q ss_pred -CCCceecc----cCCeEe
Q 035496 131 -GLPYWLRE----VQNITF 144 (833)
Q Consensus 131 -G~P~WL~~----~p~~~~ 144 (833)
-||.|+.+ +|++.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 677744
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=97.72 E-value=7.3e-05 Score=86.14 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++|++||++|+|++++.|.|...+|. +|++|.+|....+++|+.+.++||.+|+-- -.-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL--------~Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL--------YHWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee--------ccCCccHHHHh
Confidence 458999999999999999999999999999 799999888899999999999999988764 23468999976
Q ss_pred cCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 139 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
..+- .++...++-.+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 2355666666666777776663
No 23
>PLN02803 beta-amylase
Probab=97.68 E-value=0.00015 Score=83.44 Aligned_cols=80 Identities=20% Similarity=0.492 Sum_probs=63.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EeecCcccccccCCC-----
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMYA--SLRLGPFIQAEWNHG----- 130 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~G----- 130 (833)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.+++++.||++ ||.+ --|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344677999999999999999999999998 599999995 677899999999994 5654 33433 112
Q ss_pred CCCceecc----cCCeEe
Q 035496 131 GLPYWLRE----VQNITF 144 (833)
Q Consensus 131 G~P~WL~~----~p~~~~ 144 (833)
-||.|+.+ +|+|.+
T Consensus 180 pLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 38999975 678754
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.67 E-value=0.00015 Score=83.54 Aligned_cols=81 Identities=26% Similarity=0.500 Sum_probs=64.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCE--EEeecCcccccccCCC----
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMY--ASLRLGPFIQAEWNHG---- 130 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (833)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.+++++.||+ ||+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4456788999999999999999999999998 899999995 67779999999999 45655 33443 222
Q ss_pred -CCCceecc----cCCeEe
Q 035496 131 -GLPYWLRE----VQNITF 144 (833)
Q Consensus 131 -G~P~WL~~----~p~~~~ 144 (833)
-||.|+.+ +|+|.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 677754
No 25
>PLN02161 beta-amylase
Probab=97.66 E-value=0.00019 Score=82.12 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=63.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCchhHHHHHHHHHHcCCEE--EeecCcccccccCCC-----
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQYDLVKFIKMIGEHGMYA--SLRLGPFIQAEWNHG----- 130 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~G----- 130 (833)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.+++++.||++ ||.+ --|+- +-|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~I 189 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGGI 189 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccCc
Confidence 334577899999999999999999999998 899999995 677899999999994 5554 33433 112
Q ss_pred CCCceecc----cCCeEe
Q 035496 131 GLPYWLRE----VQNITF 144 (833)
Q Consensus 131 G~P~WL~~----~p~~~~ 144 (833)
-||.|+.+ +|+|.+
T Consensus 190 pLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYY 207 (531)
T ss_pred cCCHHHHhhhccCCCceE
Confidence 28999975 678755
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.45 E-value=0.00019 Score=80.67 Aligned_cols=114 Identities=16% Similarity=0.307 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccc----cCCCCCCce
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAE----WNHGGLPYW 135 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE----w~~GG~P~W 135 (833)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+ -.+++.+++++.||++.+-..=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 9999999 478889999999999554322233321 111148999
Q ss_pred ecc---cCCeEecCC--------------ChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecc
Q 035496 136 LRE---VQNITFRSD--------------NEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQI 184 (833)
Q Consensus 136 L~~---~p~~~~R~~--------------~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (833)
+.+ ..+|.+... ... ++.-+.|++.+...+++ +. +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 974 236643211 112 55556667777777763 22 57777776
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.39 E-value=0.00041 Score=75.99 Aligned_cols=228 Identities=20% Similarity=0.278 Sum_probs=110.3
Q ss_pred CCeEE-ECCEEeEEEEEEee--CCCCCcccHHHHHHHHHHcCCCEEEEeee--CCcc--------CC----cCCeeeecC
Q 035496 35 GRSLI-INGKREILFSGSIH--YTRSTPDMWPDLIQKAKRGGLNVIQTYVF--WNIH--------EP----VQGQYNFQG 97 (833)
Q Consensus 35 ~~~~~-i~G~~~~~~sG~~H--y~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~~dF~g 97 (833)
++.|. -||+||+.++=... ..|...+.|+.-|+..|+.|||+|++=++ |..+ .| .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45666 79999999984332 23568899999999999999999999877 4432 12 122377764
Q ss_pred c-----hhHHHHHHHHHHcCCEEEeec---CcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhc
Q 035496 98 Q-----YDLVKFIKMIGEHGMYASLRL---GPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDE 169 (833)
Q Consensus 98 ~-----~dl~~fl~~a~~~gL~Vilr~---GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 169 (833)
- ..+++.|+.|.+.||.+-|-| +||.-+-|..| |.. | =.+.+++|.+.|+++++..
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~------m--------~~e~~~~Y~~yv~~Ry~~~ 145 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNI------M--------PPENAERYGRYVVARYGAY 145 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTS------S---------HHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccC------C--------CHHHHHHHHHHHHHHHhcC
Confidence 3 589999999999999965432 34444444443 111 1 1377889999999999964
Q ss_pred ccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhhcCCCccc-eEEeccC-CCC-----ccccc--cc-CCCc
Q 035496 170 KLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVP-WVMCKQK-DAP-----DPIIN--TC-NGRY 239 (833)
Q Consensus 170 ~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~-----~~~~~--~~-ng~~ 239 (833)
+ +|| |=|-||+ . ......++.+.+.+.+++..-.-+ -++..+. ..+ .+-++ .+ +|..
T Consensus 146 ~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~ 212 (289)
T PF13204_consen 146 P-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHN 212 (289)
T ss_dssp S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S-
T ss_pred C-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCC
Confidence 3 465 6689999 1 123566777777777776433222 2232221 111 00011 11 1211
Q ss_pred cCCC--C-------CCCCCCCCCccccc-cccccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 035496 240 CGDT--F-------TGPNKPNKPSLWTE-NWTAQFRVYGDPPSQRSVEDLAFSTARFISRNG 291 (833)
Q Consensus 240 ~~~~--~-------~~~~~~~~P~~~~E-~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 291 (833)
..+. + .....|.+|.+..| -|.|--..+.......+++++....=+-+-+|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 213 RYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp -TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred cccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 1000 0 00346899999999 334443333323334577777765444444455
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.05 E-value=0.0011 Score=73.78 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=108.9
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEe--eeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 47 LFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTY--VFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 47 ~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688999887765442 3444555679999875 5599999999999999 89999999999999865221 1
Q ss_pred cccCCCCCCceecccCCeEecCC-ChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhh---------h
Q 035496 125 AEWNHGGLPYWLREVQNITFRSD-NEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQL---------A 194 (833)
Q Consensus 125 aEw~~GG~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 194 (833)
=|.. ..|.|+...+.. ... .+..++.++++++.++.+++. -|.|.+|-|=||-=.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999874110 000 124788999999999998873 189999999999743210 1
Q ss_pred hccccHHHHHHHHHHhhcCCCccceEEecc
Q 035496 195 YREKGNKYVQWTGNLAVGMNIGVPWVMCKQ 224 (833)
Q Consensus 195 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 224 (833)
+...+.+|+...-+.+++...++.||.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 223456788888888888878888998874
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.004 Score=68.05 Aligned_cols=133 Identities=17% Similarity=0.292 Sum_probs=98.9
Q ss_pred HHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCC
Q 035496 69 AKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDN 148 (833)
Q Consensus 69 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~ 148 (833)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4555544444555699999999999999 6899999999999954 322233 433 7899997633 345
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccch----h---hhhccccHHHHHHHHHHhhcCCCccceEE
Q 035496 149 EPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTI----Q---LAYREKGNKYVQWTGNLAVGMNIGVPWVM 221 (833)
Q Consensus 149 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~----~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 221 (833)
+..++.+++++..++.+++ |-|+.|-|=||--.- . .+++..+.+|+++.-+.+++.+-+--|+.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999998 358999999997431 1 12223678999999999999877777877
Q ss_pred ecc
Q 035496 222 CKQ 224 (833)
Q Consensus 222 ~~~ 224 (833)
+|-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 764
No 30
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.93 E-value=0.002 Score=64.15 Aligned_cols=66 Identities=21% Similarity=0.441 Sum_probs=51.7
Q ss_pred CcceEEEEEEeCCCCC--CCeEEEeCCC-ceEEEEECCeeeeeeeeccCCCCCCCceeeeecCcCcccCCc-cEEEEE
Q 035496 622 PALTWFKTYFDAPEGN--HPIAIQMNRM-GKGMIWINGQSIGRYWISYLSPLGQPTQSEYHIPRSYLKPTG-NLMVIL 695 (833)
Q Consensus 622 ~~p~fYk~tF~~p~~~--d~~fLd~~g~-gKG~vwVNG~nLGRYW~~~~~~~~GPQqtlYhVP~~~Lk~G~-N~IvVf 695 (833)
.+..|||.+|++|+.. ..++|.+.|. ....|||||+.+|+-.. +-...-+-|+. .|++|+ |+|.|.
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-------~~~~~~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-------GYTPFEFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-------TTS-EEEECGG-GSSSEEEEEEEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-------CcCCeEEeChh-hccCCCCEEEEEE
Confidence 4679999999998743 4589999885 58999999999999774 33334455764 789888 999987
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.91 E-value=0.00046 Score=80.24 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..|+++|+.||++|+|+.+.-+.|...+|. +|++|-.|....+++|+.+.++||..++-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999977764 4778999998
Q ss_pred ccCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 138 EVQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 138 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
+.-+- .++...+.-.+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75443 2355566666666677777664
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.51 E-value=0.0028 Score=74.08 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..|+++++.||++|+|+.++-+-|...+|. ++++|=+|....+++|+.+.++||..++-- ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447999999999999999999999999997 566788888899999999999999987664 3557899997
Q ss_pred cc-CCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 EV-QNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
.. -+- .++...++-.+|.+.++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 443 234444444444444555444
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.50 E-value=0.0031 Score=73.78 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..|+++++.||++|+|+-++-+-|.-..|. +|++|-.|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 458999999999999999999999999997 677888899999999999999999988764 3556899997
Q ss_pred cc-CCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 EV-QNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
.. -+- .++...++-.+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 63 443 234444555555555555555
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.014 Score=66.97 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=73.0
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEeeeCCccCCcC----CeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccC
Q 035496 58 TPDMW-----PDLIQKAKRGGLNVIQTYVFWNIHEPVQ----GQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWN 128 (833)
Q Consensus 58 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~ 128 (833)
...-| ++.+..||.+|||+||+++.|..+++.. ...+=+-...|++.|+-|++.||+|++-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 44557 8999999999999999999944446643 3321221237899999999999999998321110 00
Q ss_pred CCCCCceecc-cCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccc
Q 035496 129 HGGLPYWLRE-VQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYST 190 (833)
Q Consensus 129 ~GG~P~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 190 (833)
++--..|... .+. ....+++-.+....|+.+.+ +.-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKE------ENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccc------cchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 1111223222 111 22334444445555666555 3559999999999863
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.31 E-value=0.027 Score=56.91 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEeeeCCccC-----Cc---CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 55 TRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHE-----PV---QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 55 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
-.++++.|+.+++.||++|+|||=+- |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+ -.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 47899999999999999999999532 22211 11 2223333445899999999999999998863 11
Q ss_pred cCCCCCCceecccCCeEecCCChhH-HHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhccccHHHHHH
Q 035496 127 WNHGGLPYWLREVQNITFRSDNEPF-KYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQW 205 (833)
Q Consensus 127 w~~GG~P~WL~~~p~~~~R~~~~~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 205 (833)
|.|-.+ .|+.. .+..++..++|.++. ++....=+|=|-.|..... ....++.+.
T Consensus 89 ------~~~w~~--------~~~~~~~~~~~~v~~el~~~y-------g~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWEAERNKQVADELWQRY-------GHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred ------chhhhc--------cCHHHHHHHHHHHHHHHHHHH-------cCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 233321 22222 122233444444433 4455777888888887542 234455555
Q ss_pred HHHHhhcCCCccceE
Q 035496 206 TGNLAVGMNIGVPWV 220 (833)
Q Consensus 206 l~~~~~~~g~~vp~~ 220 (833)
|.+.+++.--+-|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 555555432244543
No 36
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.28 E-value=0.022 Score=68.65 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=56.0
Q ss_pred CCccEEEEEEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCC-cEEEEEEe
Q 035496 474 DTTDYAWYSMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGP-NHIQILGS 552 (833)
Q Consensus 474 d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvE 552 (833)
+..|..|||++|.++... .+....|.+.++...+.|||||++||...+... .+.+++.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEEe
Confidence 357899999999876421 234577889999999999999999998765432 35555544467774 59999997
Q ss_pred cc
Q 035496 553 VV 554 (833)
Q Consensus 553 n~ 554 (833)
|.
T Consensus 136 n~ 137 (604)
T PRK10150 136 NE 137 (604)
T ss_pred cC
Confidence 74
No 37
>PLN02998 beta-glucosidase
Probab=96.19 E-value=0.0054 Score=72.08 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|-.|...-+++|+.+.++||..++-- -.=.+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 677888999999999999999999866553 24457999986
Q ss_pred -cCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 139 -VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 139 -~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
+-+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 35532233334556666655555555554
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.17 E-value=0.0068 Score=70.96 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..|+++++.||++|+|+-++-|-|+-.+|. +|++|=.|...-+++|+.+.++||..++-- -+=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999866553 2446899997
Q ss_pred c-cCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 E-VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
+ +-+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 6 35542233334566666666666666555
No 39
>PLN02814 beta-glucosidase
Probab=96.11 E-value=0.0061 Score=71.74 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++++.||++|+|+-++-+-|.-.+|. +|.+|-.|....+++|+.+.++||..++-- -.=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688899999999999999999999966653 23357999986
Q ss_pred c-CCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 139 V-QNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 139 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4432222234455555555555544444
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.10 E-value=0.007 Score=70.76 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++++.||++|+|+-++-+.|.-.+|. .|.+|-.|...-+++|+.+.++||.-++-- -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347999999999999999999999999996 578888899999999999999999866653 34468999987
Q ss_pred cCCeEecCCChhHHHHHHHHHHHHHH
Q 035496 139 VQNITFRSDNEPFKYHMKKYVTMIIK 164 (833)
Q Consensus 139 ~p~~~~R~~~~~y~~~~~~~~~~l~~ 164 (833)
.-+-.=|..-..|.++++..++++..
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 54431122223444444444444444
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.05 E-value=0.0075 Score=70.59 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|=.|...-+++|+.+.++||..++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999876654 3446899997
Q ss_pred c-cCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 E-VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
. +-+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 6 35542233334566666666666655555
No 42
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.99 E-value=0.0086 Score=69.96 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++++.||++|+|+-++-+-|.-.+|. +|.+|=.|...-+++|+.+.++||..++-- -+=.+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 578888899999999999999999977664 34468999987
Q ss_pred cCCeEecCCChhHHHHHHHHHHHHH
Q 035496 139 VQNITFRSDNEPFKYHMKKYVTMII 163 (833)
Q Consensus 139 ~p~~~~R~~~~~y~~~~~~~~~~l~ 163 (833)
.-+-.=|..=..|.++++.-++++.
T Consensus 125 ~GGW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5443222223344444444444443
No 43
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.89 E-value=0.023 Score=63.42 Aligned_cols=103 Identities=22% Similarity=0.387 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcC-CeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCC
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQ-GQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQN 141 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~ 141 (833)
+|.|+-+|+.|+|.||.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999988 55 4544 666666 667777777899999999873 21 1222 232
Q ss_pred eEe-----c-CCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccccc
Q 035496 142 ITF-----R-SDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYS 189 (833)
Q Consensus 142 ~~~-----R-~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 189 (833)
-+. + .+-..-.+++..|...++..|+. .|=.+=||||-||..
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 211 1 12345668899999999999985 455778999999975
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.89 E-value=0.031 Score=71.28 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=65.5
Q ss_pred ccEEEEEEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEeccC
Q 035496 476 TDYAWYSMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVVG 555 (833)
Q Consensus 476 ~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~G 555 (833)
.|-.|||++|.++.+- .+....|.+.++...+.|||||++||...+... .+.+++.--|+.|.|+|.|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecC
Confidence 3567999999876531 234577889999999999999999998765432 3455554447788899999997432
Q ss_pred ccccccccCC----cccCce-EEEEccc
Q 035496 556 FPDSGAYMEK----RFAGPH-RVEILGL 578 (833)
Q Consensus 556 rvNyG~~~~~----~~KGI~-~V~l~g~ 578 (833)
. |..+++ ...||. +|.|--.
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred C---CCccccCCccccccccceEEEEEe
Confidence 2 222322 237998 8888543
No 45
>PLN02849 beta-glucosidase
Probab=95.85 E-value=0.011 Score=69.76 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
..|+++++.||++|+|+-++-+-|.-.+|. .|.+|=.|....+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 358999999999999999999999999996 377888899999999999999999966653 24468999986
Q ss_pred c-CCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 139 V-QNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 139 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 5532233334566666666666655555
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.69 E-value=0.052 Score=69.25 Aligned_cols=93 Identities=23% Similarity=0.372 Sum_probs=63.2
Q ss_pred ccEEEEEEEecCCCCCccCCCCC-CCeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEecc
Q 035496 476 TDYAWYSMIITLGRGDLPMRANA-SPVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVV 554 (833)
Q Consensus 476 ~GyllYrT~i~~~~~~~~~~~~~-~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~ 554 (833)
.|-.|||++|.++.+- .+. ...|.+.++.-.+.|||||+++|...+.. ..+.|++.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 4678999999876431 122 46788899999999999999999876533 2345555444778889999988422
Q ss_pred CccccccccCC----cccCce-EEEEcc
Q 035496 555 GFPDSGAYMEK----RFAGPH-RVEILG 577 (833)
Q Consensus 555 GrvNyG~~~~~----~~KGI~-~V~l~g 577 (833)
- .|..+++ ...||. +|.|--
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEE
Confidence 1 1222322 236998 898843
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.42 E-value=0.25 Score=48.09 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCCEEEEeee----CC-----ccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCc
Q 035496 64 DLIQKAKRGGLNVIQTYVF----WN-----IHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPY 134 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~yv~----Wn-----~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~ 134 (833)
+-++.+|++|.|+|.++.= |. .|.+.|+- ..+ -|..+++.|++.||.|++|...- --|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~D---llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRD---LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcC---HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4467899999999998532 22 34445543 122 56899999999999999998654 23344445799
Q ss_pred eecccCCe-------------EecCCChhHHHHHHHHHHHHHHHh
Q 035496 135 WLREVQNI-------------TFRSDNEPFKYHMKKYVTMIIKKM 166 (833)
Q Consensus 135 WL~~~p~~-------------~~R~~~~~y~~~~~~~~~~l~~~l 166 (833)
|+..+++= ..-+.+.+|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 99864431 112335678887777777776655
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.065 Score=61.85 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCe--eeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQ--YNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
..++++++.||+||+|+.++-|-|...-|..+. .+=.|-...+++++.|.++||.-++-- .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 447899999999999999999999999996654 888899999999999999999977664 3445799998
Q ss_pred cc-CCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 EV-QNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
+. -+=.=|..=..|.+.++--+++.-.+++
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 85 4543344444555555555555544444
No 49
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.29 Score=53.15 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHH---HcCCEEEeecCcccccccCCCCCCceec
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIG---EHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~---~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
.=+|.|+-+|++|+|-|++=| ||..--..|.=-=.|+.|+.+.|++|+ ..||+|++-+= | ++| =.=|+--
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y--SDf--waDPakQ- 136 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y--SDF--WADPAKQ- 136 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c--hhh--ccChhhc-
Confidence 347899999999999999865 775544455544557889999998876 56999999862 1 111 0001100
Q ss_pred ccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccc
Q 035496 138 EVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYST 190 (833)
Q Consensus 138 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 190 (833)
+.|....-.+-..-.+++-.|.+..+..++++ |=-+=||||-||-.+
T Consensus 137 ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 137 KKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred CCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 01221112233445567778888899988853 445669999999853
No 50
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.70 E-value=0.48 Score=55.90 Aligned_cols=316 Identities=15% Similarity=0.240 Sum_probs=148.2
Q ss_pred EEeEEEEEEee------CCCCCcccHHHHHHHH---HHcCCCEEEEeee--------CCccCCcCCeee---ecC-c---
Q 035496 43 KREILFSGSIH------YTRSTPDMWPDLIQKA---KRGGLNVIQTYVF--------WNIHEPVQGQYN---FQG-Q--- 98 (833)
Q Consensus 43 ~~~~~~sG~~H------y~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~~d---F~g-~--- 98 (833)
+++.=++|++= ..+.+++.=++.|+.+ +-+|++.+|+.|- +..-+ .|+.|+ |+= .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 44455777763 2233444333334333 4589999999885 33222 233221 221 1
Q ss_pred hhHHHHHHHHHHc--CCEEEeecCcccccccCCCCCCceecccCCe----Eec-CCChhHHHHHHHHHHHHHHHhhhccc
Q 035496 99 YDLVKFIKMIGEH--GMYASLRLGPFIQAEWNHGGLPYWLREVQNI----TFR-SDNEPFKYHMKKYVTMIIKKMKDEKL 171 (833)
Q Consensus 99 ~dl~~fl~~a~~~--gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R-~~~~~y~~~~~~~~~~l~~~l~~~~~ 171 (833)
..+..+|+.|++. +|+++.-| |. .|+|++....+ .++ ...+.|.++...||.+.++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1234678877764 68888777 52 79999874433 244 234678888888988888888853
Q ss_pred ccccCCceEEecccccccch-------h-hhhc-cccHHHHH-HHHHHhhcCCC--ccceEEeccC--CCCc---cccc-
Q 035496 172 FASQGGPIILVQIENEYSTI-------Q-LAYR-EKGNKYVQ-WTGNLAVGMNI--GVPWVMCKQK--DAPD---PIIN- 233 (833)
Q Consensus 172 ~~~~gGpII~~QiENEyg~~-------~-~~~~-~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 233 (833)
|=+|=++-+.||.... . +.+. +..++|++ +|.-.+++.|+ ++-+++.|.. +.++ .++.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 5599999999998741 1 1111 23467775 58889998877 7777665521 1221 1111
Q ss_pred -----ccC--CCccCCC--CCC------CCCCCCCccccccccccccccCCCCCC---CCHHHHHHHHHHHHHhCCeeee
Q 035496 234 -----TCN--GRYCGDT--FTG------PNKPNKPSLWTENWTAQFRVYGDPPSQ---RSVEDLAFSTARFISRNGTLIN 295 (833)
Q Consensus 234 -----~~n--g~~~~~~--~~~------~~~~~~P~~~~E~~~Gwf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 295 (833)
-+. +++|... ... ...|++.++.||-..|.. .|+..... ..++..+..+-.-|..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 111 2222111 100 235888999999866531 12211111 1123344444444555543 2
Q ss_pred eeee------ccCCCcCCCCC-CccccccCCCCCcccccCCCCCccHHHHHHHHHHHhhhhhccccCCCccccCCCccee
Q 035496 296 YYMY------HGGTNFGRTSA-NFVTTRYYDEAPLDEFAVFAKGPKWGHLKDLHRALKLCKKALLWGYPSVQKLGQDLEA 368 (833)
Q Consensus 296 ~YM~------hGGTNfG~~~G-~~~~TSYDYdAPL~E~G~~~~tpKy~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~ 368 (833)
+-+| .||-|++.-.. +.++. | .+.+.|..+|.|+.|....+|++.-...+... ........+.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iiv--d-----~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIV--D-----SDTGEFYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEE--E-----GGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEE--E-----cCCCeEEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeE
Confidence 2222 58888753211 21111 1 12344346899999999888876432222110 0000112334
Q ss_pred eEEec-CCceEEEeecCCCcc
Q 035496 369 IVYEG-HGACAAFLSNNSTYM 388 (833)
Q Consensus 369 ~~y~~-~~~~~~fl~n~~~~~ 388 (833)
-.|.+ ++..+.-+.|..+..
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~ 464 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSD 464 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-
T ss_pred EEEECCCCCEEEEEEcCCCCc
Confidence 44554 455556666655433
No 51
>PRK09936 hypothetical protein; Provisional
Probab=93.57 E-value=0.23 Score=54.06 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=47.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc-hhHHHHHHHHHHcCCEEEee
Q 035496 55 TRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ-YDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 55 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~-~dl~~fl~~a~~~gL~Vilr 118 (833)
.+++++.|+.+++.+|+.||+|+ .|=|..- |.=||.+. ..|.+.++.|++.||.|+|.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tL--ivQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTL--VVQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEE--EEEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 36899999999999999999986 4456544 11188764 58999999999999999886
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.11 E-value=1.2 Score=49.65 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCC-------ccCCc-------CCe-eeecCchhHHHHHHHHHHcCCEEEeecCcc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWN-------IHEPV-------QGQ-YNFQGQYDLVKFIKMIGEHGMYASLRLGPF 122 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~-------~G~-~dF~g~~dl~~fl~~a~~~gL~Vilr~GPy 122 (833)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 567778999999999999997666532 22221 111 1144 79999999999999999776 11
Q ss_pred cccccCC----CCCCceec-ccCCeEecC----CChhH----HHHHHHHHHHHHHHhhhcccccccCCceEEecccc
Q 035496 123 IQAEWNH----GGLPYWLR-EVQNITFRS----DNEPF----KYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIEN 186 (833)
Q Consensus 123 icaEw~~----GG~P~WL~-~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 186 (833)
-..-... -..|.|+. +.++..... .+..| ..+|+.|+..++..|.. .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1000011 12588876 356543333 12222 45778887777777653 22 466788873
No 53
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.91 E-value=38 Score=38.99 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=126.5
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEe-------eeCCccCCcCCeeeecCch-hHHHHHHHHHHcCCEEEeecCccc
Q 035496 52 IHYTRSTPDMWPDLIQKAKRGGLNVIQTY-------VFWNIHEPVQGQYNFQGQY-DLVKFIKMIGEHGMYASLRLGPFI 123 (833)
Q Consensus 52 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~~dF~g~~-dl~~fl~~a~~~gL~Vilr~GPyi 123 (833)
+.+.+..++.|- +.+|++|+.-|-.- -.|.-.-..-..-+-...+ -+..+.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 344455666665 47888999866431 1255443221111211123 4567888999999987764332
Q ss_pred ccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhccccHHHH
Q 035496 124 QAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYV 203 (833)
Q Consensus 124 caEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 203 (833)
-+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--+
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 37764 5553321111124456788888888888888877632 2344442 2222110 111113
Q ss_pred HHHHHHhhcCCCcc-ceEEeccCCCCcccccccCCCc--cCCCCCCCC-CCCCCc-cccccccccccccCC-CCCCCCHH
Q 035496 204 QWTGNLAVGMNIGV-PWVMCKQKDAPDPIINTCNGRY--CGDTFTGPN-KPNKPS-LWTENWTAQFRVYGD-PPSQRSVE 277 (833)
Q Consensus 204 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~~~~~~ng~~--~~~~~~~~~-~~~~P~-~~~E~~~Gwf~~WG~-~~~~~~~~ 277 (833)
+.|.+++++...+. -.++++..... . . ..|.+ +.+... +. ....|- .++=.-.+|+=+-++ ....++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~~~-~--~-~~g~~~~~~e~~~-p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWGGT-G--C-KHGGFYTDEERGA-PGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEcccccc-C--C-CCCCcccCcccCC-CCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 45666666544432 12333332100 0 0 00111 101110 00 001111 111111245444443 33467899
Q ss_pred HHHHHHHHHHHhCCee-eeeeeeccCCCcCCCCCCccccccCCCCCcccccCCCCCccHHHHHHHHHHHhhhhhcccc
Q 035496 278 DLAFSTARFISRNGTL-INYYMYHGGTNFGRTSANFVTTRYYDEAPLDEFAVFAKGPKWGHLKDLHRALKLCKKALLW 354 (833)
Q Consensus 278 ~~~~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~TSYDYdAPL~E~G~~~~tpKy~~lr~l~~~l~~~~~~l~~ 354 (833)
++...+.+..++|+++ +|. +-+.+|. ++...-..|+++...++...+.+-.
T Consensus 288 ~li~~l~~~Vsk~GnlLLNV-------------------------gP~~dG~-ip~~~~~~L~~iG~Wl~~ngeaIy~ 339 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNV-------------------------GPKADGT-IPEEEEERLLEIGKWLKVNGEAIYG 339 (384)
T ss_pred HHHHHHhhhcCCCceEEEcc-------------------------CCCCCCC-CCHHHHHHHHHHHHHHHhCCceeec
Confidence 9999999999998873 222 3346787 6666778899999888876554443
No 54
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.89 E-value=0.23 Score=57.02 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=109.2
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCcc-CC---cCCeeee-cCchhHHHHHHHHHHc
Q 035496 37 SLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIH-EP---VQGQYNF-QGQYDLVKFIKMIGEH 111 (833)
Q Consensus 37 ~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~dF-~g~~dl~~fl~~a~~~ 111 (833)
.|.++++++..++..-.++++..++-+++|+-|+-+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888888878888887778899999999999999987 333 54 3443322 2456899999999999
Q ss_pred CCEEEeecCcccccccCCCCCCc---eec-ccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccc
Q 035496 112 GMYASLRLGPFIQAEWNHGGLPY---WLR-EVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENE 187 (833)
Q Consensus 112 gL~Vilr~GPyicaEw~~GG~P~---WL~-~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 187 (833)
+|+|+++. |.+==.+||.=. |-- +.|+-.+ -|+.++..-++|+..+++-.+. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99998874 333223455422 331 1233211 2566666677888888775553 458888999999
Q ss_pred ccchhhhhccccHHHHHHHHHHhh
Q 035496 188 YSTIQLAYREKGNKYVQWTGNLAV 211 (833)
Q Consensus 188 yg~~~~~~~~~~~~y~~~l~~~~~ 211 (833)
.... -...+..+++|+++|+-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 2210 12367899999999974
No 55
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.83 E-value=3.5 Score=44.62 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceec
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS-LRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~ 137 (833)
..-|++.|+.++++|++.|++.+ +.. ...+...+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 45699999999999999999953 222 2223445555 3478899999999999975 44431 11111
Q ss_pred ccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccc--cch-hhhhccccHHHHHHHHHHhhcCC
Q 035496 138 EVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEY--STI-QLAYREKGNKYVQWTGNLAVGMN 214 (833)
Q Consensus 138 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy--g~~-~~~~~~~~~~y~~~l~~~~~~~g 214 (833)
+-..|+.-+++..+.+++.++..+. + |.++|.+-- .++ +.. .... ..-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~-~~~~~~~~~~~~~-~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLAG-YDVYYEEHDEETR-RRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEecC-cccccCcCCHHHH-HHHHHHHHHHHHHHHHcC
Confidence 2233566666667777777777763 3 567665421 111 100 0000 012255666777777778
Q ss_pred Ccc
Q 035496 215 IGV 217 (833)
Q Consensus 215 ~~v 217 (833)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 764
No 56
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.28 E-value=5 Score=48.85 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=47.1
Q ss_pred EEeeCCCCCc-ccHHH---HH-HHHHHcCCCEEEE-eeeCCccCCcCC---------eeeecCchhHHHHHHHHHHcCCE
Q 035496 50 GSIHYTRSTP-DMWPD---LI-QKAKRGGLNVIQT-YVFWNIHEPVQG---------QYNFQGQYDLVKFIKMIGEHGMY 114 (833)
Q Consensus 50 G~~Hy~r~~~-~~W~~---~l-~k~ka~G~N~V~~-yv~Wn~hEp~~G---------~~dF~g~~dl~~fl~~a~~~gL~ 114 (833)
=|+|.....+ -.++. +| .-+|++|+|+|++ .|+.+-....=| .-.|.+..+|.+|++.|+++||.
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 4666644433 22443 43 6679999999998 676532111001 11345567999999999999999
Q ss_pred EEeecCc
Q 035496 115 ASLRLGP 121 (833)
Q Consensus 115 Vilr~GP 121 (833)
|||-.=+
T Consensus 222 VilD~V~ 228 (613)
T TIGR01515 222 VILDWVP 228 (613)
T ss_pred EEEEecc
Confidence 9988543
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=89.08 E-value=0.98 Score=45.61 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCccC-------CcCCee-----eecCchhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 62 WPDLIQKAKRGGLNVIQTYVFWNIHE-------PVQGQY-----NFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
+.+.|..+|++|+|+|.+-=++...+ -.+..| .|....+|.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45667779999999999854433222 122222 456678999999999999999998875544444
No 58
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=88.08 E-value=4.8 Score=47.49 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=94.8
Q ss_pred CCeEEECCEEeEEEEEEeeCCC-----CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHH
Q 035496 35 GRSLIINGKREILFSGSIHYTR-----STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIG 109 (833)
Q Consensus 35 ~~~~~i~G~~~~~~sG~~Hy~r-----~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~ 109 (833)
+..|.|+|.|.++-++...+.. ..-+.-+-.|+.++++|+|++++ |. -|.| .-+.|-++|-
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhh
Confidence 3568999999999998765533 23344556799999999999997 43 2333 4579999999
Q ss_pred HcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccc--
Q 035496 110 EHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENE-- 187 (833)
Q Consensus 110 ~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-- 187 (833)
+.||.|---. =+.||- =-.+..|++-|+.=++.=+.+|+.| ..||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccH
Confidence 9999664221 122322 2347789998888777777777754 46776654444
Q ss_pred ccchhhhhcc---c----cHH----HHHHHHHHhhcCCCccceEEecc
Q 035496 188 YSTIQLAYRE---K----GNK----YVQWTGNLAVGMNIGVPWVMCKQ 224 (833)
Q Consensus 188 yg~~~~~~~~---~----~~~----y~~~l~~~~~~~g~~vp~~~~~~ 224 (833)
=.-...-|+. . -++ |.+-++++.....-..|++|+-.
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2211111221 1 122 33446666665556679888754
No 59
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.74 E-value=5.6 Score=42.78 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS-LRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~ 138 (833)
-.|++.++.++++|++.|++.+. ..|+ .....+|+ ..++..+.++++++||.|. +.++-+ -.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----------~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----------RRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----------cCc---
Confidence 35999999999999999999642 2222 11122333 3478999999999999875 333211 000
Q ss_pred cCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccch--hhhhccccHHHHHHHHHHhhcCCCc
Q 035496 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTI--QLAYREKGNKYVQWTGNLAVGMNIG 216 (833)
Q Consensus 139 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~ 216 (833)
.+.+.|+.-++...+.++++++..+. + |.++|.+.--..+... .... ..-.+.++.|.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 12345666666666667776666653 3 5566654210000000 0001 12235677888888888886
Q ss_pred c
Q 035496 217 V 217 (833)
Q Consensus 217 v 217 (833)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=84.35 E-value=2.7 Score=42.41 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=74.9
Q ss_pred HHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEec
Q 035496 66 IQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFR 145 (833)
Q Consensus 66 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 145 (833)
|+.++++|+..|+....+....... ...++.+.++++++||.+..--.+.. +. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc----------ccccccc
Confidence 6789999999999987643222222 34799999999999999653221110 00 0111124
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccc--ccccch--hhhhccccHHHHHHHHHHhhcCCCcc
Q 035496 146 SDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIE--NEYSTI--QLAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 146 ~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
+..+. ++...+.+.+.++..+. + |.+.|.+..- +..... ...+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 77777788888888773 3 6677777743 122111 0011 134457777888888878763
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.08 E-value=15 Score=45.61 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEe-ee-------CCccCC---cCCeeeecCchhHHHHHHHHHHcCCEEEeecCc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTY-VF-------WNIHEP---VQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGP 121 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~y-v~-------Wn~hEp---~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (833)
+.|++.|..+|++|+|+|++- |+ |.++-. .+ .-.|....+|.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347788999999999999973 32 332210 00 113555679999999999999999987544
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.88 E-value=4.1 Score=46.98 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee-------------CCccCCcCCeee-ecCchhHHHHHHHHHHcCCEEEeecCccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVF-------------WNIHEPVQGQYN-FQGQYDLVKFIKMIGEHGMYASLRLGPFI 123 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~-------------Wn~hEp~~G~~d-F~g~~dl~~fl~~a~~~gL~Vilr~GPyi 123 (833)
.+..-.+.|.+++++|+|||-.-|- |..-- ||+.- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 6667789999999999999964332 44322 44331 12444788899999999999999998888
Q ss_pred ccccCCCC---CCceecc-cCCeEe-cCCC-------hhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccccc
Q 035496 124 QAEWNHGG---LPYWLRE-VQNITF-RSDN-------EPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYS 189 (833)
Q Consensus 124 caEw~~GG---~P~WL~~-~p~~~~-R~~~-------~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 189 (833)
.|--..-. -|.|+.. .|+... |... .+..-.|+.|+..++..+.. .+ .|=++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 76322211 3667765 344433 3332 13455677777776665553 23 566789876665
No 63
>PRK14706 glycogen branching enzyme; Provisional
Probab=83.83 E-value=14 Score=45.15 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHcCCCEEEE-eee-------CCccC--CcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 67 QKAKRGGLNVIQT-YVF-------WNIHE--PVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 67 ~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.-+|++|+|+|+. .|. |...- ...=.=.|....+|.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999996 332 32210 00001123455799999999999999999874
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=83.21 E-value=1.9 Score=50.75 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=47.3
Q ss_pred eeCCCCC----cccHH---HHHHHHHHcCCCEEEEe-eeCCc-----cCCcCCe-e-------------eecCchhHHHH
Q 035496 52 IHYTRST----PDMWP---DLIQKAKRGGLNVIQTY-VFWNI-----HEPVQGQ-Y-------------NFQGQYDLVKF 104 (833)
Q Consensus 52 ~Hy~r~~----~~~W~---~~l~k~ka~G~N~V~~y-v~Wn~-----hEp~~G~-~-------------dF~g~~dl~~f 104 (833)
+|.|.|+ .+.|. +.|.-+|++|+++|-+- ++-+. |--.+-. | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555554 35576 56777899999999874 55332 2222212 2 34456799999
Q ss_pred HHHHHHcCCEEEeecC
Q 035496 105 IKMIGEHGMYASLRLG 120 (833)
Q Consensus 105 l~~a~~~gL~Vilr~G 120 (833)
++.|++.||+||+-.=
T Consensus 87 i~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 87 IDALHENGIKVYADVV 102 (479)
T ss_pred HHHHHHCCCEEEEEEC
Confidence 9999999999998863
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.97 E-value=17 Score=39.27 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHc-CCEEEeecCcccccccCCCCCCceecc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEH-GMYASLRLGPFIQAEWNHGGLPYWLRE 138 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (833)
.-|++.|+.+|++|++.|++-+........+ .....+++.+.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6699999999999999999987532111111 11346899999999999 7665543 2321 1
Q ss_pred cCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccc
Q 035496 139 VQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIEN 186 (833)
Q Consensus 139 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 186 (833)
.+...++.-++.....+.+.++..+. + |-+.|.+..-+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCCC
Confidence 12334454555555555666665552 2 45666665543
No 66
>PRK12568 glycogen branching enzyme; Provisional
Probab=82.72 E-value=19 Score=44.69 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCEEEE-eee-------CCc-----cCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 65 LIQKAKRGGLNVIQT-YVF-------WNI-----HEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
.|.-+|++|+|+|+. .|+ |.+ ..|.+ .|....+|..|++.|+++||.|||-.=|-=+++
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 367789999999997 443 432 11211 355667999999999999999999865544443
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.04 E-value=15 Score=45.61 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEE-eeeCC----ccCCcCC-----eeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 66 IQKAKRGGLNVIQT-YVFWN----IHEPVQG-----QYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 66 l~k~ka~G~N~V~~-yv~Wn----~hEp~~G-----~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
|.-+|++|+|+|.. +|+=. .|--.+. .=.|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 45410 0111111 1124556799999999999999999874
No 68
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.01 E-value=12 Score=42.17 Aligned_cols=137 Identities=16% Similarity=0.300 Sum_probs=88.6
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHH---HcCCEEEeecCcccccccCCCCCC
Q 035496 57 STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIG---EHGMYASLRLGPFIQAEWNHGGLP 133 (833)
Q Consensus 57 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~---~~gL~Vilr~GPyicaEw~~GG~P 133 (833)
..|+..+.-++.+|+.|++.--.|-.| |.|.+-|++-++..- +.+|...|+ |.+-.|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 367778889999999999998888777 467777877776654 345555555 2232331 1
Q ss_pred ceecccCCeEecCCChhHH--HHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhh
Q 035496 134 YWLREVQNITFRSDNEPFK--YHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAV 211 (833)
Q Consensus 134 ~WL~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 211 (833)
.|-....++.+- ..|. +..++.++.|++.+++..+.--+|-||+++=--.+. .+-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 232222333222 1222 224667788888888755555588899988432222 256789999999999
Q ss_pred cCCCccceEEe
Q 035496 212 GMNIGVPWVMC 222 (833)
Q Consensus 212 ~~g~~vp~~~~ 222 (833)
++|+..+.+..
T Consensus 186 ~~G~~giyii~ 196 (345)
T PF14307_consen 186 EAGLPGIYIIA 196 (345)
T ss_pred HcCCCceEEEE
Confidence 99998665543
No 69
>PRK01060 endonuclease IV; Provisional
Probab=81.54 E-value=23 Score=38.15 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEE--EeecCcccccccCCCCCCceeccc
Q 035496 62 WPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYA--SLRLGPFIQAEWNHGGLPYWLREV 139 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~ 139 (833)
+++.+++++++|++.|++.+. +-+.-..+.++-. ++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~---~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL---NIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH---HHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 889999999999999999653 1122122223222 6888999999999973 11123331
Q ss_pred CCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecc
Q 035496 140 QNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQI 184 (833)
Q Consensus 140 p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (833)
+.+-+.|+..+++..+.+++.++..+. + |.++|.+..
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~~--l----ga~~vv~h~ 110 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCAA--L----GAKLLVFHP 110 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEcC
Confidence 123456778888888778777777663 3 556665543
No 70
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.87 E-value=5.1 Score=44.75 Aligned_cols=111 Identities=21% Similarity=0.353 Sum_probs=71.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEe-------eeCCccCCcCCeeeec-C-chhHHHHHHHHHHcCCEEEeecCcccccccC
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTY-------VFWNIHEPVQGQYNFQ-G-QYDLVKFIKMIGEHGMYASLRLGPFIQAEWN 128 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~~dF~-g-~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~ 128 (833)
.++.-+..|+.+++.|+|+|=+= |.+..-.|..-+..-. . ..|+.++++.++++|||+|.|.=-+----..
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 34567889999999999999764 3465444443332222 1 3699999999999999999997432211100
Q ss_pred CCCCCceecc-cCCeEecCCC-----hhHHHHHHHHHHHHHHHhhhc
Q 035496 129 HGGLPYWLRE-VQNITFRSDN-----EPFKYHMKKYVTMIIKKMKDE 169 (833)
Q Consensus 129 ~GG~P~WL~~-~p~~~~R~~~-----~~y~~~~~~~~~~l~~~l~~~ 169 (833)
.--|.|-.+ ..+-..|... .+|.+.+.+|.-.|++.++..
T Consensus 91 -~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 -EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred -hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 114556553 2221123222 268899999999999999864
No 71
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.61 E-value=32 Score=36.80 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe-ecCcccccccCCCCCCceeccc
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL-RLGPFIQAEWNHGGLPYWLREV 139 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil-r~GPyicaEw~~GG~P~WL~~~ 139 (833)
-|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~-- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM-- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc--
Confidence 49999999999999999983211 011011 122 24788999999999999753 331 123333322
Q ss_pred CCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccc-cc-chhhhhccccHHHHHHHHHHhhcCCCcc
Q 035496 140 QNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENE-YS-TIQLAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 140 p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
..++.-+++..+.+++.++.-+. + |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~~--l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAKE--M----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 12344455555555555555542 2 455554422111 00 000011 123356788888888888764
No 72
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.04 E-value=16 Score=39.48 Aligned_cols=130 Identities=15% Similarity=0.235 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceeccc
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS-LRLGPFIQAEWNHGGLPYWLREV 139 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~~ 139 (833)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999642 1111 11123333 2368899999999999875 333211 0010
Q ss_pred CCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccc-ccch-hhhhccccHHHHHHHHHHhhcCCCcc
Q 035496 140 QNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENE-YSTI-QLAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 140 p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg~~-~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
+-+.|+.-++...+.+++.++..+. + |.++|.+.=-.- ++.. ...+ ..-.+.++.|.+.+++.|+.+
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLAGYDVYYEQANNETR-RRFIDGLKESVELASRASVTL 154 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCccccccccHHHHH-HHHHHHHHHHHHHHHHhCCEE
Confidence 1234556666667777777777663 3 567665521000 0000 0000 011356677788888888764
No 73
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=78.46 E-value=3.4 Score=41.26 Aligned_cols=69 Identities=22% Similarity=0.125 Sum_probs=36.4
Q ss_pred EEeeecCCCCC--cCCCcccc--ceecCChhH-HHHhhcCCCCcceEeec----cccccCCCCCCC--CcceEEEEEEEE
Q 035496 762 VQFASYGDSIG--ICGGYQYG--NCNAQDTKE-VVERFCLGKHTCQIPFE----KELLIRNWDPCP--NVKKSLAVQVKC 830 (833)
Q Consensus 762 I~~A~yGr~~~--~C~~~~~~--~C~~~~s~~-~V~~~C~Gk~~C~v~a~----~~~F~~g~DPC~--gt~KyL~V~y~C 830 (833)
|..|-||.... .+.+.... .+..+...+ .|.=.|+=+.|+-.... ....+|- |||| |..|.|.|.|..
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dS~L~l~~~~sKs~L~GF~-DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALVKDSQLILPEGVSKSGLPGFY-DPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEeecCEEEEcCCCchhhCCCCC-CCccccCCccEEEEEEEE
Confidence 78899999432 33211110 011111111 22333444555544333 1122234 9999 889999999987
Q ss_pred e
Q 035496 831 G 831 (833)
Q Consensus 831 ~ 831 (833)
.
T Consensus 134 ~ 134 (151)
T PF11875_consen 134 R 134 (151)
T ss_pred C
Confidence 5
No 74
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=78.15 E-value=33 Score=39.43 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=53.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEe----eeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe-ecCcccccccCCCCC
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTY----VFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL-RLGPFIQAEWNHGGL 132 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil-r~GPyicaEw~~GG~ 132 (833)
++....+++++++++|+..|+.. ++|..-+.+. ..++.++-++++++||.|.. -++-+-.
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 34457899999999999999864 2222111000 23578899999999999763 3321111
Q ss_pred CceecccCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 133 PYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 133 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
|.|.. - -+-+.|+..+++.-+++.+.+..-+
T Consensus 95 ~~~~~--g--~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD--G--GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC--C--CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11211 1 1345577777666555566655555
No 75
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=77.57 E-value=2.4 Score=45.37 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCC--eee-------ecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQG--QYN-------FQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------F~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
.+.|.-+|++|+|+|.+-=++......-| .-| |....+|.++++.|+++||+|||-.=
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 35688899999999998644442211111 222 23457999999999999999998753
No 76
>PRK14705 glycogen branching enzyme; Provisional
Probab=77.52 E-value=35 Score=44.79 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEE-eee-------CCcc--CCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 65 LIQKAKRGGLNVIQT-YVF-------WNIH--EPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~-------Wn~h--Ep~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.|.-+|++|+|+|+. .|+ |.+. -...=.=.|....||.+|++.|+++||.|||--
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999997 453 4321 000001134566799999999999999999874
No 77
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.08 E-value=3.7 Score=46.61 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=47.4
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 48 FSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 48 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+|=++++...+.+.....|++|+++|+.. ||=++|.|++..=+.- ..+..+++.|+++||.|++-..|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~----iFTSL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKR----IFTSLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEE----EEEEE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCE----EECCCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 56678888888888999999999999954 5667899986432222 37899999999999999999876543
No 78
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=74.15 E-value=6.6 Score=46.34 Aligned_cols=69 Identities=22% Similarity=0.374 Sum_probs=43.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HcCCCEEEEe-ee---CCcc-C-CcCC--eeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 49 SGSIHYTRSTPDMWPDLIQKAK-RGGLNVIQTY-VF---WNIH-E-PVQG--QYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 49 sG~~Hy~r~~~~~W~~~l~k~k-a~G~N~V~~y-v~---Wn~h-E-p~~G--~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
-|+-|.....++.|+..|+.++ +.||..|++- +| .... | ..+| .|||+ .||.+++...++||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3555555567788999999986 7799988863 22 1111 1 1223 39999 99999999999999977665
Q ss_pred C
Q 035496 120 G 120 (833)
Q Consensus 120 G 120 (833)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 79
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.89 E-value=5.6 Score=47.66 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-eee-------CCcc-----CCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 64 DLIQKAKRGGLNVIQT-YVF-------WNIH-----EPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
++|.-+|++|+|+|.. +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999997 453 3221 1211 24566799999999999999999874
No 80
>PRK09989 hypothetical protein; Provisional
Probab=73.81 E-value=36 Score=36.28 Aligned_cols=43 Identities=12% Similarity=0.341 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
-.+++|++++++|++.|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999854332 2467888899999999774
No 81
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=73.54 E-value=20 Score=41.00 Aligned_cols=122 Identities=14% Similarity=0.201 Sum_probs=69.0
Q ss_pred CcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeE----ecCC-ChhHHHHHHHHHHHH
Q 035496 88 PVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNIT----FRSD-NEPFKYHMKKYVTMI 162 (833)
Q Consensus 88 p~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~----~R~~-~~~y~~~~~~~~~~l 162 (833)
+..|.|||+.+..-..||+.|++.|...++-+ .=..|.|+++.-... ..++ -+...++-..|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 56799999987778889999999999988765 234788888743210 0111 245666777788888
Q ss_pred HHHhhhcccccccCCceEEecccccccchh-------hhhc-cccHHHHHHHHHHhhcCCCccceEEecc
Q 035496 163 IKKMKDEKLFASQGGPIILVQIENEYSTIQ-------LAYR-EKGNKYVQWTGNLAVGMNIGVPWVMCKQ 224 (833)
Q Consensus 163 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 224 (833)
+++++.+ |=+|=-+=-=||....- |.+. +...+.++.|...+++.|+..-+.+|+.
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 8888643 22444444457765321 1111 2456888999999999999877666553
No 82
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.01 E-value=45 Score=35.34 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985322 13688899999999999763
No 83
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=71.56 E-value=13 Score=40.83 Aligned_cols=109 Identities=13% Similarity=0.193 Sum_probs=72.6
Q ss_pred eEEEEEEeeCCCCCccc-HHH---HHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 45 EILFSGSIHYTRSTPDM-WPD---LIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 45 ~~~~sG~~Hy~r~~~~~-W~~---~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
.+-+++..||+.-+... .+. +|++-.++|.+.+-|-.++ |.+ .+.+|++.|++.|+.+=+-||
T Consensus 129 ~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~F----------d~~---~~~~f~~~~~~~gi~~PIi~G 195 (281)
T TIGR00677 129 YFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLFY----------DVD---NFLKFVNDCRAIGIDCPIVPG 195 (281)
T ss_pred ceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeecccee----------cHH---HHHHHHHHHHHcCCCCCEEee
Confidence 35688888887753322 332 4444346999999987764 344 788999999999776444455
Q ss_pred cccc---------cccCCCCCCceeccc-CCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 121 PFIQ---------AEWNHGGLPYWLREV-QNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 121 Pyic---------aEw~~GG~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
...+ +||..--+|.||.+. .. ...+++..++.--++..++++.|.+
T Consensus 196 I~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~--~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 196 IMPINNYASFLRRAKWSKTKIPQEIMSRLEP--IKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred ccccCCHHHHHHHHhcCCCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 578877889999861 11 1233455566777788888888874
No 84
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=71.42 E-value=5.9 Score=40.15 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=32.8
Q ss_pred EEEeCCCceEEEEECCeeeeeeeeccCCCCCCCceeeeecC---cCcccCCccEEEEE
Q 035496 641 AIQMNRMGKGMIWINGQSIGRYWISYLSPLGQPTQSEYHIP---RSYLKPTGNLMVIL 695 (833)
Q Consensus 641 fLd~~g~gKG~vwVNG~nLGRYW~~~~~~~~GPQqtlYhVP---~~~Lk~G~N~IvVf 695 (833)
.|..++.|+=.+||||+.+|+--.. .|+..-.+++|+.- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~--P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA--PGWTDYDKRVYYQTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE----------BTTEEEEEEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc--cccccCCCceEEEEEeChHHhCCCCCEEEEE
Confidence 4677788888999999999984310 00012223344342 77999999999986
No 85
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=71.35 E-value=13 Score=48.84 Aligned_cols=114 Identities=17% Similarity=0.264 Sum_probs=72.2
Q ss_pred CeEEECCEEeEEEEE---EeeCCCC--CcccHHHHHHHHHHcCCCEEEE-eee-CCc-cCC--cCCeee----e----cC
Q 035496 36 RSLIINGKREILFSG---SIHYTRS--TPDMWPDLIQKAKRGGLNVIQT-YVF-WNI-HEP--VQGQYN----F----QG 97 (833)
Q Consensus 36 ~~~~i~G~~~~~~sG---~~Hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn~-hEp--~~G~~d----F----~g 97 (833)
-.+.|+|++++.+.+ .-..+++ +-+.|++.|+.+|++|.|+|.. .++ =.. ..| ..+.+. | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 456666633333322 3345564 4477999999999999999985 444 110 000 111111 3 35
Q ss_pred chhHHHHHHHHHHc-CCEEEeecCcccccccCCCCC-CceecccCCeEecCCChhHHHHH
Q 035496 98 QYDLVKFIKMIGEH-GMYASLRLGPFIQAEWNHGGL-PYWLREVQNITFRSDNEPFKYHM 155 (833)
Q Consensus 98 ~~dl~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~R~~~~~y~~~~ 155 (833)
..|+.++++.|++. ||.+|+-. =|+.-+- =.||.++|+.-.-..+.+||+++
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 67899999999996 99999874 2444443 35888888865556666666654
No 86
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.80 E-value=9.2 Score=42.20 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeeeecCc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
..+..++.++++|+.|+..=.+.+-...+... -+.|.|.-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56677899999999997665444443333322 135555422 28999999999999999999888775
No 87
>PRK12313 glycogen branching enzyme; Provisional
Probab=66.44 E-value=11 Score=46.19 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=38.4
Q ss_pred HHHHHHcCCCEEEE-eee-------CCccC--CcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 66 IQKAKRGGLNVIQT-YVF-------WNIHE--PVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 66 l~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
|.-+|++|+|+|.. .|+ |...- ...=.-.|.+..||.+|++.|+++||.|||-.=
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 58899999999996 453 22100 000011355678999999999999999998743
No 88
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=66.16 E-value=13 Score=44.10 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCc---CCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPV---QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
.++++++.||++|++.-+.-|-|+..=|. .+.-+-.|......+|+...++||...+-. -+=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 47899999999999999999999987774 356888888889999999999999966553 2446899998
Q ss_pred c-cCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 138 E-VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 138 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
+ +.+-.-+..=..|+++++-=|+++..++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 6 56543344445677777777788777777
No 89
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=66.14 E-value=21 Score=41.09 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
..+.|+++++.+|++||+....-+- ....+.- ..|...++.|++.|+++.|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7888999999999999999887664 1222222 378888999999999999997
No 90
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.11 E-value=70 Score=34.10 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 62 WPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
++++|++++++|++.|++.. |. ..+++.+.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 78999999999999999832 11 13799999999999999864
No 91
>PLN02960 alpha-amylase
Probab=65.63 E-value=12 Score=46.94 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEE-eee-------CCccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 64 DLIQKAKRGGLNVIQT-YVF-------WNIHEP--VQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+.|.-+|++|+|+|+. .|+ |.+.-- ..=.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4588999999999997 454 432100 0001124456799999999999999999885
No 92
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=65.49 E-value=99 Score=33.05 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCccCCcCCe-eeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccC
Q 035496 62 WPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQ-YNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQ 140 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p 140 (833)
-++.|+++.++|++.|+... .+|..-. -+++ ..+++++.++++++||.+.+ -+||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~-h~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSV-HAPYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE-ECCce-----------------
Confidence 35789999999999999843 2332210 0222 23689999999999998654 23331
Q ss_pred CeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecc
Q 035496 141 NITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQI 184 (833)
Q Consensus 141 ~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (833)
+.+.+.|+..+++..+++.+.++..+. + |.++|.+..
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h~ 105 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFHP 105 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEcc
Confidence 124566788888877788888777663 3 566666543
No 93
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=64.46 E-value=11 Score=45.72 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCEEEE-eee---------------CCccC-----CcCCeee----ec--CchhHHHHHHHHHHcCCEEE
Q 035496 64 DLIQKAKRGGLNVIQT-YVF---------------WNIHE-----PVQGQYN----FQ--GQYDLVKFIKMIGEHGMYAS 116 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----F~--g~~dl~~fl~~a~~~gL~Vi 116 (833)
+.|.-+|++|+|+|++ +|+ |.+.- |. +.|- |. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 444 22220 10 0010 11 12689999999999999999
Q ss_pred eec
Q 035496 117 LRL 119 (833)
Q Consensus 117 lr~ 119 (833)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 94
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=64.25 E-value=25 Score=29.38 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999832 333 58877765 4788999999999988754
No 95
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.17 E-value=10 Score=45.49 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEEe-eeCCccCCcCCeee----------ecCchhHHHHHHHHHHcCCEEEeecCc
Q 035496 62 WPDLIQKAKRGGLNVIQTY-VFWNIHEPVQGQYN----------FQGQYDLVKFIKMIGEHGMYASLRLGP 121 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~d----------F~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (833)
+.+.|.-+|++|+|+|-+- ++=+-.. ..-|+ |....+|.++++.|+++||+|||-.=|
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 5678889999999999873 4432110 01222 445679999999999999999987533
No 96
>PRK09505 malS alpha-amylase; Reviewed
Probab=63.99 E-value=13 Score=45.84 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCEEEE-eeeCCccCCc----CC------------------eeeecCchhHHHHHHHHHHcCCEEEee
Q 035496 62 WPDLIQKAKRGGLNVIQT-YVFWNIHEPV----QG------------------QYNFQGQYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~~dF~g~~dl~~fl~~a~~~gL~Vilr 118 (833)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|..+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 457788899999999986 4554433221 11 123456679999999999999999988
Q ss_pred cC
Q 035496 119 LG 120 (833)
Q Consensus 119 ~G 120 (833)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 97
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.81 E-value=11 Score=33.71 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=34.0
Q ss_pred CeEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEeccCcc
Q 035496 500 PVLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVVGFP 557 (833)
Q Consensus 500 ~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Grv 557 (833)
..|++.+-....+-||||+++|.....+ .+.+.. ...|.++|++ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~~~---~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFWQP---DRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEeCC---CCCeeEEEEE-EcCCCCE
Confidence 4566544366999999999998765432 232321 2678888887 7777764
No 98
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.24 E-value=15 Score=43.91 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEEe-eeCCccCCc-CCee---e-------ecCchhHHHHHHHHHHcCCEEEeec
Q 035496 62 WPDLIQKAKRGGLNVIQTY-VFWNIHEPV-QGQY---N-------FQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~-~G~~---d-------F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+.+.|.-+|++|+|+|-+- |+ .. +. ..-| | |....|+.++++.|+++||+|||-.
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~-~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFF-QS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCc-CC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6678999999999999873 44 11 11 1122 2 4556799999999999999999864
No 99
>PRK10785 maltodextrin glucosidase; Provisional
Probab=61.63 E-value=15 Score=44.60 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEE-eeeCC--ccCCcCCee-----eecCchhHHHHHHHHHHcCCEEEeec
Q 035496 63 PDLIQKAKRGGLNVIQT-YVFWN--IHEPVQGQY-----NFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.+.|.-+|++|+|+|-+ +||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999997 56632 121111111 24566799999999999999999864
No 100
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=61.45 E-value=13 Score=40.06 Aligned_cols=52 Identities=15% Similarity=0.377 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
+...++-|+.+|++||++|++- .|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 6778999999999999999884 4555554 33778999999999999999887
No 101
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=60.32 E-value=14 Score=44.88 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=44.9
Q ss_pred EeeCCCCCc-------ccHHHHHHHHHHcCCCEEEE-eee-------CCccCCcCCeee------ecCchhHHHHHHHHH
Q 035496 51 SIHYTRSTP-------DMWPDLIQKAKRGGLNVIQT-YVF-------WNIHEPVQGQYN------FQGQYDLVKFIKMIG 109 (833)
Q Consensus 51 ~~Hy~r~~~-------~~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~d------F~g~~dl~~fl~~a~ 109 (833)
|+|--.+.+ +.=.+.|.-+|++|+++|+. .|- |.+ .|+.- |..-.||.+||+.|.
T Consensus 149 ElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH 224 (628)
T COG0296 149 ELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAH 224 (628)
T ss_pred EEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHH
Confidence 566544444 33346788899999999997 332 552 12222 334469999999999
Q ss_pred HcCCEEEee
Q 035496 110 EHGMYASLR 118 (833)
Q Consensus 110 ~~gL~Vilr 118 (833)
++||-|||-
T Consensus 225 ~~GIgViLD 233 (628)
T COG0296 225 QAGIGVILD 233 (628)
T ss_pred HcCCEEEEE
Confidence 999999986
No 102
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=60.09 E-value=46 Score=38.47 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=59.3
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcC----CeeeecCc---hhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 52 IHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQ----GQYNFQGQ---YDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 52 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~g~---~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
-+|+.++.+.-.+.+++++++|++.+-+==-|....... |.|--+-. .-|..+++.+++.||..=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 357778888888999999999998777666687553222 33332211 24999999999999999999988765
Q ss_pred cccC--CCCCCceecccCC
Q 035496 125 AEWN--HGGLPYWLREVQN 141 (833)
Q Consensus 125 aEw~--~GG~P~WL~~~p~ 141 (833)
+.=. .-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 4211 2347999987554
No 103
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=59.74 E-value=2.4 Score=50.87 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=52.3
Q ss_pred eCCCCCeEEEEEeeecCCCCCcCCCccccceecCChhHHHHhhcCCCCcceEeeccccc
Q 035496 752 TCPDFKVITNVQFASYGDSIGICGGYQYGNCNAQDTKEVVERFCLGKHTCQIPFEKELL 810 (833)
Q Consensus 752 ~C~~g~~I~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F 810 (833)
-|.++.++..|.+|.||..+++|+.+..++|-++++...+.+.|..+..|+|..-.+.+
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCK 389 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhc
Confidence 45578788889999999999999999999999999999999999999999998765544
No 104
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.64 E-value=28 Score=38.31 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=49.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCC--------cCCeeeecCc--hhHHHHHHHHHHcCCEEEee
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP--------VQGQYNFQGQ--YDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--------~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr 118 (833)
+|..|+ +.+.-++.++++|+.||-.=.+++-...|.- .-+.|.|+-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 344553 5566788999999999877666654333331 2246666533 38999999999999999988
Q ss_pred cCcc
Q 035496 119 LGPF 122 (833)
Q Consensus 119 ~GPy 122 (833)
.=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 7443
No 105
>PRK12677 xylose isomerase; Provisional
Probab=59.52 E-value=2.1e+02 Score=33.02 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeec---CchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCcee
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ---GQYDLVKFIKMIGEHGMYAS-LRLGPFIQAEWNHGGLPYWL 136 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL 136 (833)
.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999873 1111112221 11358899999999999977 54432211111111
Q ss_pred cccCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 137 REVQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 137 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
-+-+.|+.-++.+.+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1445677777776666666666555
No 106
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=59.37 E-value=36 Score=34.44 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=31.8
Q ss_pred CeEEeCCcceEEEEEECCEEEEEEec-----ccCCc--eeEEEeccccCCCCcEEEEEEeccCcc
Q 035496 500 PVLIVASLGHALVAFVNGEYVGNGHG-----SHLDK--SFVFRKPIKLKEGPNHIQILGSVVGFP 557 (833)
Q Consensus 500 ~~L~v~~~~D~a~VfVng~~vG~~~~-----~~~~~--~~~~~~~~~l~~g~~~L~ILvEn~Grv 557 (833)
..|.|... .+-.+||||+.||...- ....+ -.++++.--|+.|.|+|.|++-+....
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~ 69 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYN 69 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S-
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccc
Confidence 56666543 36689999999997541 11111 123554444888999999999765443
No 107
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.14 E-value=19 Score=43.29 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCEEEE-eeeCCccCCcC-Cee----------eecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 62 WPDLIQKAKRGGLNVIQT-YVFWNIHEPVQ-GQY----------NFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 62 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~-G~~----------dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
+.++|..+|++|+++|-+ .++-+ |.. .-| +|....||.++++.|+++||+|||-.=
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 457889999999999987 45422 211 122 244567999999999999999998753
No 108
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=58.81 E-value=25 Score=30.05 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=24.1
Q ss_pred CCcceEEEEEECCEEEEEEecccCC--ceeEEEe
Q 035496 505 ASLGHALVAFVNGEYVGNGHGSHLD--KSFVFRK 536 (833)
Q Consensus 505 ~~~~D~a~VfVng~~vG~~~~~~~~--~~~~~~~ 536 (833)
....|.|.||++++++|+++++..+ .++.|++
T Consensus 24 pk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 24 PKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 4668999999999999999987543 3344443
No 109
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.44 E-value=76 Score=35.76 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=55.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCch--hH--HHHHHHHHHcCCEEEeecCcccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQY--DL--VKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~--dl--~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+|..|+ ..+..++.++++++.||..=.+.+-+..+.. -+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455564 4566788999999999977666655444433 4667765432 77 99999999999999999999998
Q ss_pred cc
Q 035496 125 AE 126 (833)
Q Consensus 125 aE 126 (833)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 64
No 110
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=55.21 E-value=2e+02 Score=34.89 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEe-eeCCccCCcCCee---e-----ecCc----hhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTY-VFWNIHEPVQGQY---N-----FQGQ----YDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~---d-----F~g~----~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
+.=++.|..|+...||.|+.| ..|-+|.|-|+.= + +.++ .-+...|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456778999999999999999 7899999987643 1 2222 3578999999999999885433232222
Q ss_pred c--CCCCCCceecc
Q 035496 127 W--NHGGLPYWLRE 138 (833)
Q Consensus 127 w--~~GG~P~WL~~ 138 (833)
. ..|=.|.|-+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888864
No 111
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=55.20 E-value=22 Score=40.37 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHhhcCCCccceEEeccCC---CCc-----cccccc-CCCccC-------CCCCC---------CCCCCC
Q 035496 198 KGNKYVQWTGNLAVGMNIGVPWVMCKQKD---APD-----PIINTC-NGRYCG-------DTFTG---------PNKPNK 252 (833)
Q Consensus 198 ~~~~y~~~l~~~~~~~g~~vp~~~~~~~~---~~~-----~~~~~~-ng~~~~-------~~~~~---------~~~~~~ 252 (833)
.-.+|.+++++.+|+..-+.|+.++.... ..+ ..++.. ...|.. ..... ....++
T Consensus 210 ~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~k 289 (374)
T PF02449_consen 210 RVAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGK 289 (374)
T ss_dssp HHHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 45678888888898877777766553221 111 001100 001111 00000 124789
Q ss_pred CccccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeeeccCCCcCCCCCCccccccCCCCCccccc-CCCC
Q 035496 253 PSLWTENWTAQFRVYGDPPSQRSVEDLAFSTARFISRNGTLINYYMYHGGTNFGRTSANFVTTRYYDEAPLDEFA-VFAK 331 (833)
Q Consensus 253 P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~TSYDYdAPL~E~G-~~~~ 331 (833)
|.+++|..+| -..|+.......+..+....-.-++.|+..+.|+-+ ..-.+|.=.. ..+.|+-+| . +
T Consensus 290 pf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~--~ 357 (374)
T PF02449_consen 290 PFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGRE--P 357 (374)
T ss_dssp -EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS----B
T ss_pred ceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCC--C
Confidence 9999999998 566766555555566665555678899998777655 3333442211 135677788 6 7
Q ss_pred CccHHHHHHHHHHHh
Q 035496 332 GPKWGHLKDLHRALK 346 (833)
Q Consensus 332 tpKy~~lr~l~~~l~ 346 (833)
+++|.+++++.+.|+
T Consensus 358 ~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 358 TRRYREVAQLGRELK 372 (374)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999988775
No 112
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=55.05 E-value=21 Score=39.83 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=51.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCC--eeeecCch--hHHHHHHHHHHcCCEEEeecCccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQG--QYNFQGQY--DLVKFIKMIGEHGMYASLRLGPFI 123 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF~g~~--dl~~fl~~a~~~gL~Vilr~GPyi 123 (833)
+|..|+ ..+.-++.++++++.||..=.+.+-|.... ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 344454 555567889999999887766665555443 234 77766433 899999999999999999876666
No 113
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=54.31 E-value=51 Score=35.92 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=71.4
Q ss_pred eEEEEEEeeCCCCCccc-H---HHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCE--EEee
Q 035496 45 EILFSGSIHYTRSTPDM-W---PDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMY--ASLR 118 (833)
Q Consensus 45 ~~~~sG~~Hy~r~~~~~-W---~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr 118 (833)
.+.+++..||.+-+... - .++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47899999888654332 2 24466666889998888765 3444 788999999999766 5544
Q ss_pred cCccccc-------ccCCCCCCceeccc-CCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 119 LGPFIQA-------EWNHGGLPYWLREV-QNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 119 ~GPyica-------Ew~~GG~P~WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
.-|-... +|..-.+|.|+.+. .. ...+....+++.-++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332 36677789999861 11 1122245666777777777777763
No 114
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=54.28 E-value=13 Score=31.60 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=28.2
Q ss_pred eEEeCCcceEEEEEECCEEEEEEecccCCceeEEEeccccCCCCcEEEEEEeccCcccc
Q 035496 501 VLIVASLGHALVAFVNGEYVGNGHGSHLDKSFVFRKPIKLKEGPNHIQILGSVVGFPDS 559 (833)
Q Consensus 501 ~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvNy 559 (833)
.|.|...-..|.|||||+++|... ..+. .++.|.++|.| +.-|...+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~~ 49 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEPY 49 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCeeE
Confidence 455555556789999999999432 1222 15567666554 55554443
No 115
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=53.57 E-value=20 Score=38.95 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=43.8
Q ss_pred CCCcccccCCC---CCCccEEEEEEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEE
Q 035496 462 ATNPLELFNLT---KDTTDYAWYSMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNG 523 (833)
Q Consensus 462 ~p~~mEql~~t---~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~ 523 (833)
.|.++-.+++. +|.+|.+||+.++.++.+.. .-.+....|++.++|-.|.|+|||.-+=..
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 34556666664 47899999999998764321 122345789999999999999999765443
No 116
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=52.87 E-value=84 Score=31.42 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHcCCCEEEEeee--CCccC-----CcCCeeeecCchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCC
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVF--WNIHE-----PVQGQYNFQGQYDLVKFIKMIGEHGMYAS-LRLGPFIQAEWNHGGL 132 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~--Wn~hE-----p~~G~~dF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~ 132 (833)
..++..+.+++.|+..+....+ |.... +.+. .. .....+.+.|++|++.|...+ +.+|.
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~-~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-RE-EALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HH-HHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hH-HHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 4566777889999997776554 43321 1111 11 123489999999999999855 55542
Q ss_pred CceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccch
Q 035496 133 PYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTI 191 (833)
Q Consensus 133 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 191 (833)
|-.. -......-++.+.+.+++|+++.+++ | |.+-+||..+..
T Consensus 95 --~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-----PEDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-----TTSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSSS
T ss_pred --cccc-----cCCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCcc
Confidence 1000 01223356677777888888888753 2 456789988753
No 117
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.78 E-value=29 Score=38.32 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=51.5
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCccccc
Q 035496 55 TRSTPDMWPDLIQKAKRGGLN--VIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQA 125 (833)
Q Consensus 55 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyica 125 (833)
.....+.-++.++++++.|+. +|-+=..|. ..-|.|.|.-. -|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 445777789999999999964 555555563 34566666432 389999999999999999999888864
No 118
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=52.50 E-value=6.7 Score=41.58 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEee
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr 118 (833)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5668899999999999999997665555444455 8999999999999999999
No 119
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=52.49 E-value=28 Score=43.74 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCc-----cCCc-----CCeeeecCchhHHHHHHHHHHcCCEEEeecCccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNI-----HEPV-----QGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFI 123 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~-----hEp~-----~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyi 123 (833)
+-+.|.+.|.-++++|+++|-+-=++.. |--. .=.-.|.+..+|.+|++.|+++||.|||-.=|-=
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3345888999999999999977433221 1100 0012355788999999999999999998865543
No 120
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=49.91 E-value=24 Score=46.46 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEE-eeeCCccCCc---CCe-----ee----------ec--CchhHHHHHHHHHHcCCEEEeec
Q 035496 64 DLIQKAKRGGLNVIQT-YVFWNIHEPV---QGQ-----YN----------FQ--GQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G~-----~d----------F~--g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+.|.-+|++|+|+|+. .|+=+..|.. .|. || |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 5653322221 110 22 23 56799999999999999999874
No 121
>PLN02361 alpha-amylase
Probab=49.04 E-value=36 Score=39.38 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEEeeeCCc---cCCcCCe-e----eecCchhHHHHHHHHHHcCCEEEeec
Q 035496 64 DLIQKAKRGGLNVIQTYVFWNI---HEPVQGQ-Y----NFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~-~----dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+.|.-++++|+++|-+.=+... |--.+.. | .|....+|.++|+.|+++||+||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 5677789999999988544322 2111221 2 24456799999999999999999865
No 122
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=48.05 E-value=47 Score=35.90 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCee--eecC--chhHHHHHHHHHHcCCEEEeecCccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQY--NFQG--QYDLVKFIKMIGEHGMYASLRLGPFI 123 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--dF~g--~~dl~~fl~~a~~~gL~Vilr~GPyi 123 (833)
..+...+.++.+++.|+..=.+.+-+..++. -+.| +|.- --|..++++.+++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999986666665555443 3555 4432 13899999999999999999998887
No 123
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.91 E-value=47 Score=34.13 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=55.7
Q ss_pred EEEeeCCCCC-----cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeee--cC-chhHHHHHHHHHHcCCEEEeecC
Q 035496 49 SGSIHYTRST-----PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNF--QG-QYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 49 sG~~Hy~r~~-----~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF--~g-~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
-|.+||+|.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++.++++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3999998753 455777788888765532 1123334433343321 11 13678999999999999999888
Q ss_pred cccc----ccc---CCCCCCceecccC
Q 035496 121 PFIQ----AEW---NHGGLPYWLREVQ 140 (833)
Q Consensus 121 Pyic----aEw---~~GG~P~WL~~~p 140 (833)
++-- +.. +....|.|+..+.
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y~ 158 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHYD 158 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCCC
Confidence 8521 111 1456899998753
No 124
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.07 E-value=35 Score=37.96 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=48.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCC-----cCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-----VQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
..+...+.++++++.||-.=.+.+-+..+.. .-|.|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4556788999999999876555554333332 2346666532 38999999999999999999877764
No 125
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=46.93 E-value=39 Score=42.79 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCC------eee-------ecCchhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQG------QYN-------FQGQYDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G------~~d-------F~g~~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+-+-+.+.|.-++++|+|+|-+-=+.. ..+| ..| |.+..++.+|++.|+++||.|||-.=|.=+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~---a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILA---ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCcc---CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 445588999999999999998742221 1222 112 456789999999999999999998765443
Q ss_pred c
Q 035496 125 A 125 (833)
Q Consensus 125 a 125 (833)
|
T Consensus 95 ~ 95 (879)
T PRK14511 95 A 95 (879)
T ss_pred c
Confidence 3
No 126
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=46.76 E-value=36 Score=45.99 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCe---e----------eecCchhHHHHHHHHHHcCCEEEeecCcc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQ---Y----------NFQGQYDLVKFIKMIGEHGMYASLRLGPF 122 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---~----------dF~g~~dl~~fl~~a~~~gL~Vilr~GPy 122 (833)
+-+-|.+.|.-+|++|+|+|-+-=++. ..+|. | .|.+..+|.+|++.|+++||.|||-.=|-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 445689999999999999998753332 22221 2 24577899999999999999999887543
No 127
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=46.32 E-value=20 Score=36.31 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCceEEEEECCeeeeeeee-ccC-CCC--------CCCceeeeecCcCcccCCccEEEEE
Q 035496 646 RMGKGMIWINGQSIGRYWI-SYL-SPL--------GQPTQSEYHIPRSYLKPTGNLMVIL 695 (833)
Q Consensus 646 g~gKG~vwVNG~nLGRYW~-~~~-~~~--------~GPQqtlYhVP~~~Lk~G~N~IvVf 695 (833)
.-++=+|.||| ..+..+. .+. +.| +-.+.--+-||+..|++|.|+|.|=
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt 149 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLT 149 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEE
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEE
Confidence 34666899999 6666553 111 111 2233344558999999999999774
No 128
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=46.17 E-value=97 Score=32.67 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=66.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeec-CchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCce
Q 035496 57 STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ-GQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYW 135 (833)
Q Consensus 57 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~W 135 (833)
..+.+++..++.++++|+..+.+|..... ....+..+ |..|-..-+++|+++|+. -|-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP---------------PGTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC---------------CCCEEE
Confidence 36788999999999999999999998765 23333333 778999999999999982 234445
Q ss_pred ecccCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 136 LREVQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 136 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
+.-+.+. .+..+...+..||+.+.+.|+.
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 5433222 2333778899999999999885
No 129
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.16 E-value=75 Score=34.73 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=60.1
Q ss_pred EEEeCCeEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeec--CchhHHHHHHH
Q 035496 31 VTYDGRSLIINGKREILFSGSIHYTRS-TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ--GQYDLVKFIKM 107 (833)
Q Consensus 31 v~~d~~~~~i~G~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--g~~dl~~fl~~ 107 (833)
|... .+.+.+.+++++.|=- .+ .++.-.+.-+++|++|+..++.|.+=+-.. -+.|. |...+..+-+.
T Consensus 16 ~~~~--~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~ 86 (266)
T PRK13398 16 VKVG--DVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEV 86 (266)
T ss_pred EEEC--CEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHH
Confidence 4443 3777777899998822 22 567778889999999999999998753222 34665 57789999999
Q ss_pred HHHcCCEEEeec
Q 035496 108 IGEHGMYASLRL 119 (833)
Q Consensus 108 a~~~gL~Vilr~ 119 (833)
+++.||.++--|
T Consensus 87 ~~~~Gl~~~te~ 98 (266)
T PRK13398 87 GDKYNLPVVTEV 98 (266)
T ss_pred HHHcCCCEEEee
Confidence 999999888776
No 130
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=45.83 E-value=30 Score=42.85 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCEEEE-eeeCCccC---CcCC-----ee---e-------e---cCchhHHHHHHHHHHcCCEEEeec
Q 035496 65 LIQKAKRGGLNVIQT-YVFWNIHE---PVQG-----QY---N-------F---QGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~---d-------F---~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.|.-+|++|+|+|.. .|+=...+ ...| -| | | ....+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999997 45511111 1111 01 1 1 124689999999999999999975
No 131
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.38 E-value=43 Score=36.02 Aligned_cols=53 Identities=9% Similarity=0.281 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCc
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGP 121 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (833)
....++-++.+|+.||++|++ ..|..+++ ..+..++|++++++||.|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356778888999999999987 45666665 347889999999999999988773
No 132
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.66 E-value=36 Score=38.26 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
+|..|. ..+.-++.++++++.||..=.+.+-+... ...+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 345554 45556788999999998776665553322 34566777533 2889999999999999999998888753
No 133
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.45 E-value=2e+02 Score=31.14 Aligned_cols=124 Identities=19% Similarity=0.350 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCcC--CeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQ--GQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
-.|+++|.-+|++||+.|++-|- |.-+ -.-||+.. -...+.+.+++.|+.+ |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSvD----EsDeRLaRLDWs~~-er~~l~~ai~etgv~i-----pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSVD----ESDERLARLDWSKE-ERLALVNAIQETGVRI-----PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEecc----chHHHHHhcCCCHH-HHHHHHHHHHHhCCCc-----cchh-----------hh
Confidence 45999999999999999999774 3322 35666622 4456788888998742 2222 11
Q ss_pred ccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhcc----ccHHHH---HHHHHHh
Q 035496 138 EVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYRE----KGNKYV---QWTGNLA 210 (833)
Q Consensus 138 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~----~~~~y~---~~l~~~~ 210 (833)
.+..--+=+.|+.-++.+...+.+-+..-. +| .|--+|+ .+|.-+|.. +.+.|+ +|..+++
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL----AGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL----AGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee----ccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 122112458899998888877776655443 23 4566786 222222332 444555 4444555
Q ss_pred hcCCCc
Q 035496 211 VGMNIG 216 (833)
Q Consensus 211 ~~~g~~ 216 (833)
.++++.
T Consensus 145 ~~aqV~ 150 (287)
T COG3623 145 ARAQVM 150 (287)
T ss_pred HhhccE
Confidence 555554
No 134
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=44.14 E-value=77 Score=35.70 Aligned_cols=72 Identities=10% Similarity=0.148 Sum_probs=55.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+|..|+ ..+..++.++++++.+|-.=.+++-|..+. .-+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 555665 566678899999999987766666666554 3466777543 37899999999999999999889987
No 135
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.98 E-value=41 Score=37.20 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee---CCccCCcCC--------eeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVF---WNIHEPVQG--------QYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G--------~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.+..-.++++.+|..|+|++-+-+= =++.=|... +=.|- |+..||+.|+|+|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 5566788999999999999876543 111112221 22244 99999999999999999997
No 136
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=43.90 E-value=38 Score=43.13 Aligned_cols=21 Identities=5% Similarity=0.363 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 035496 99 YDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 137
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.73 E-value=49 Score=36.99 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=84.7
Q ss_pred CeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee--CCcc---CC----------------------
Q 035496 36 RSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF--WNIH---EP---------------------- 88 (833)
Q Consensus 36 ~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h---Ep---------------------- 88 (833)
|+|+||=.| ||+ +.+..++.|+.|-..++|++..++- |.+- .|
T Consensus 3 RG~mLD~aR--------~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~ 72 (326)
T cd06564 3 RGFMLDVGR--------KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNL 72 (326)
T ss_pred ceeEEEccC--------CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCC
Confidence 455555444 554 6888999999999999999998654 3221 11
Q ss_pred --cCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCC-CCceecccCCeEecCC---------ChhHHHHHH
Q 035496 89 --VQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGG-LPYWLREVQNITFRSD---------NEPFKYHMK 156 (833)
Q Consensus 89 --~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG-~P~WL~~~p~~~~R~~---------~~~y~~~~~ 156 (833)
..|.|.- .++..+++.|++.|+.||--+ +.=| .=+|+..+|+...+.. |+ =.+.+-
T Consensus 73 ~~~~~~YT~---~di~eiv~yA~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~ 140 (326)
T cd06564 73 TANDGYYTK---EEFKELIAYAKDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAV 140 (326)
T ss_pred CCCCCcccH---HHHHHHHHHHHHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHH
Confidence 1223333 499999999999999999654 2212 2235554554433210 11 123444
Q ss_pred HHHHHHHHHhhhcccccccCCceEEeccc-ccccchhhhhccccHHHHHHHHHHhhcCCCcc
Q 035496 157 KYVTMIIKKMKDEKLFASQGGPIILVQIE-NEYSTIQLAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 157 ~~~~~l~~~l~~~~~~~~~gGpII~~QiE-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
++++.|+..+.+ ++- ..++.| +|- -|+-... .....-..|++.+.+.+++.|..+
T Consensus 141 ~f~~~l~~E~~~--~f~-~~~~~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 141 KFVKALFDEYLD--GFN-PKSDTV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred HHHHHHHHHHHH--hcC-CCCCEE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 455555555552 221 112332 220 1111100 001123478888888898888763
No 138
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=42.87 E-value=60 Score=36.71 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=59.6
Q ss_pred EEEeCCeEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecC--chhHHHHHHH
Q 035496 31 VTYDGRSLIINGKREILFSGSIHYTRS-TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQG--QYDLVKFIKM 107 (833)
Q Consensus 31 v~~d~~~~~i~G~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g--~~dl~~fl~~ 107 (833)
|.+ ..+.|+|.+++++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.
T Consensus 82 v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~ 152 (335)
T PRK08673 82 VKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEA 152 (335)
T ss_pred EEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHH
Confidence 444 347788888888988 3333 56667777888899999999999984 4444478875 5667777777
Q ss_pred HHHcCCEEEeec
Q 035496 108 IGEHGMYASLRL 119 (833)
Q Consensus 108 a~~~gL~Vilr~ 119 (833)
+++.||.++-.+
T Consensus 153 ~~~~Gl~v~tev 164 (335)
T PRK08673 153 REETGLPIVTEV 164 (335)
T ss_pred HHHcCCcEEEee
Confidence 889999888775
No 139
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=42.80 E-value=40 Score=37.54 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCccccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQA 125 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyica 125 (833)
+|..|+ ..+..++.++++++.++-.=.+.+-+.... .-+.|+|+-. -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 345554 555678899999999987666555433332 3356766533 389999999999999999998888863
No 140
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=42.24 E-value=83 Score=38.43 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 41 NGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 41 ~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
++++-+.+++..|+.+.+.+.=-++|.+-.++|.+.+-|-.+++. + .+.+|++.+++.++.||...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEee
Confidence 335568899999987765444445666667899999999887653 3 788899998888888888877
Q ss_pred ccccc--------ccCCCCCCceecc-cCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 121 PFIQA--------EWNHGGLPYWLRE-VQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 121 Pyica--------Ew~~GG~P~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
|-... +|..-=+|.|+.+ .... . +....+++..++..++++.|+
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~~--~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRAV--E-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHhc--C-CchHHHHHHHHHHHHHHHHHH
Confidence 75443 2555557999986 1111 1 224667777788888888776
No 141
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=41.92 E-value=73 Score=31.18 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=47.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeec-CchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCcee
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ-GQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWL 136 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL 136 (833)
.+.+.+..++.|+++|+..+-+|.....+. ......++ |..|-..-++.|++.|+. -|-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP---------------AGTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC---------------CCCEEEE
Confidence 468889999999999999999998872111 11112222 668899999999999983 2344555
Q ss_pred cccCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 137 REVQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 137 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
.-+- -..+..+.+.+..|++.+...|..
T Consensus 100 avD~----d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDY----DATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--T----S-B-HH-------HHHHHHHHHGG
T ss_pred Eeec----CCCchhhhhHHHHHHHHHHHHHhh
Confidence 4321 225677888888999999998885
No 142
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.23 E-value=1e+02 Score=32.97 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=56.6
Q ss_pred cCCeeeec-CchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 89 VQGQYNFQ-GQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 89 ~~G~~dF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
..|...+. +..++..+++.|++.|++|++..|= |..+. +.. + ..++.- -+++.+.|+..++
T Consensus 35 ~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~~---r~~fi~~lv~~~~ 96 (253)
T cd06545 35 ANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPAK---RKALVDKIINYVV 96 (253)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHHH---HHHHHHHHHHHHH
Confidence 35676664 3457889999999999999999861 22111 110 1 123332 3467888888888
Q ss_pred hcccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhhcCC
Q 035496 168 DEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGMN 214 (833)
Q Consensus 168 ~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 214 (833)
++++ . ++.|+=|+.... ...-..+++.|++.+++.|
T Consensus 97 ~~~~----D----GIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 97 SYNL----D----GIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred HhCC----C----ceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 6543 2 356666765320 1122345666666665544
No 143
>PLN03059 beta-galactosidase; Provisional
Probab=40.93 E-value=1.1e+02 Score=38.67 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=48.9
Q ss_pred CcceEEEEEEeCCCCC-------CCeEEEeCCCc-eEEEEECCeeeeeeeeccCCCCCCCceeeeecCcCc-ccCCccEE
Q 035496 622 PALTWFKTYFDAPEGN-------HPIAIQMNRMG-KGMIWINGQSIGRYWISYLSPLGQPTQSEYHIPRSY-LKPTGNLM 692 (833)
Q Consensus 622 ~~p~fYk~tF~~p~~~-------d~~fLd~~g~g-KG~vwVNG~nLGRYW~~~~~~~~GPQqtlYhVP~~~-Lk~G~N~I 692 (833)
.+-.||+++|+++... +| .|.+.+.+ .-+|||||.-+|.-+.+- .+++ +- ++.+. |+.|.|.|
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~----~~~~--~~-~~~~v~l~~g~n~L 540 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL----SNPK--LT-FSQNVKLTVGINKI 540 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec----CCcc--eE-EecccccCCCceEE
Confidence 4679999999986542 23 37776654 579999999999976432 2333 33 66554 77899999
Q ss_pred EEEeeecc
Q 035496 693 VILEEEEE 700 (833)
Q Consensus 693 vVfeEe~~ 700 (833)
-||-|-.|
T Consensus 541 ~iLse~vG 548 (840)
T PLN03059 541 SLLSVAVG 548 (840)
T ss_pred EEEEEeCC
Confidence 98833334
No 144
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.72 E-value=56 Score=36.36 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCC---cCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEP---VQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+.-.+.++++++.||..=.+.+-+....- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999977666654333322 1234555422 38999999999999999999888774
No 145
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=40.38 E-value=58 Score=35.99 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee----CCccCC----------------cCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVF----WNIHEP----------------VQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.-+ ++..+++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 6778899999999999999999987 754311 22345444 999999999999999996
Q ss_pred ec
Q 035496 118 RL 119 (833)
Q Consensus 118 r~ 119 (833)
-+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 65
No 146
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=39.99 E-value=51 Score=42.99 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHcCCEEEeecC
Q 035496 99 YDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~G 120 (833)
.+|..+++.|+++||.|||-.=
T Consensus 555 ~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecc
Confidence 5899999999999999998853
No 147
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.81 E-value=1e+02 Score=34.94 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=52.3
Q ss_pred CCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee----CCccC-----------------------
Q 035496 35 GRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF----WNIHE----------------------- 87 (833)
Q Consensus 35 ~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE----------------------- 87 (833)
-|+|+||=.| ||+ +.+..++.|..|...++|+...++- |.+--
T Consensus 3 ~RG~mLD~aR--------~f~--~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~ 72 (357)
T cd06563 3 WRGLMLDVSR--------HFF--PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQG 72 (357)
T ss_pred ccceeeeccc--------cCc--CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCccccccccc
Confidence 3556666444 553 6788899999999999999998874 43211
Q ss_pred -----CcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 88 -----PVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 88 -----p~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+..|.|.-+ |+..+++.|++.|+.||.-+
T Consensus 73 ~~~~~~~~~~YT~~---di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 73 GGDGTPYGGFYTQE---EIREIVAYAAERGITVIPEI 106 (357)
T ss_pred ccCCCccCceECHH---HHHHHHHHHHHcCCEEEEec
Confidence 113445444 99999999999999999765
No 148
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=39.68 E-value=37 Score=36.78 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=38.9
Q ss_pred ceecCChhHHHHhhcCCCCcceEeeccccccCCCCCC-CCcceEEEEEEEEec
Q 035496 781 NCNAQDTKEVVERFCLGKHTCQIPFEKELLIRNWDPC-PNVKKSLAVQVKCGF 832 (833)
Q Consensus 781 ~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F~~g~DPC-~gt~KyL~V~y~C~~ 832 (833)
.|.....+..+...|.+++.|++..++.-| + -+| ++-.+|+.|.+.|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~--~-~~~~~~~~~~~~~n~e~~~ 232 (265)
T KOG4729|consen 183 HECVSSVLPQLLRQCHAKEGCTLKSDGIKG--H-CRHGHLHKVYVTVTEEIFS 232 (265)
T ss_pred ceeecccchhhhhcccccCCceeecCCccc--c-ccccceeEEEEEecccccc
Confidence 444556678889999999999999999888 4 566 455689999988864
No 149
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=39.51 E-value=43 Score=38.80 Aligned_cols=69 Identities=14% Similarity=0.324 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCccccccc
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQAEW 127 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyicaEw 127 (833)
..+...+.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|...+++.+++.|+++++..-|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 455678899999999997666655533333 4445555432 28999999999999999999988775443
No 150
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.46 E-value=1.3e+02 Score=33.26 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee----CCcc-CCc--CCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVF----WNIH-EPV--QGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~h-Ep~--~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
+.++-++.++.|...|+|.+..|+- +.-+ |-. +|.|.= .++..+++.|++.||.||--+-
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCC
Confidence 4467889999999999999999863 3222 111 344433 4999999999999999997653
No 151
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=38.58 E-value=1.1e+02 Score=35.58 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=64.0
Q ss_pred eCCCC--CcccHHHHHHHHHHcCCCEEEEe-ee----------------CC--ccCCcCCeeeecCchhHHHHHHHHH-H
Q 035496 53 HYTRS--TPDMWPDLIQKAKRGGLNVIQTY-VF----------------WN--IHEPVQGQYNFQGQYDLVKFIKMIG-E 110 (833)
Q Consensus 53 Hy~r~--~~~~W~~~l~k~ka~G~N~V~~y-v~----------------Wn--~hEp~~G~~dF~g~~dl~~fl~~a~-~ 110 (833)
+.+++ +-+.|++.|+.++++|.|+|..- +- ++ +.++ .....| .++.++++.++ +
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~-~~~~~~---~~v~~~v~~~~~~ 88 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPP-GKESTF---EDVKEFVKEAEKK 88 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCC-CccccH---HHHHHHHHHHHHH
Confidence 44454 45689999999999999999742 11 11 1111 111222 49999999985 7
Q ss_pred cCCEEEeecCcccccccCCCCC-CceecccCCeEecCCChhHHHHHH---HHHHHHHHHhh
Q 035496 111 HGMYASLRLGPFIQAEWNHGGL-PYWLREVQNITFRSDNEPFKYHMK---KYVTMIIKKMK 167 (833)
Q Consensus 111 ~gL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~R~~~~~y~~~~~---~~~~~l~~~l~ 167 (833)
.||.++.-. =|+.-.. =.||.++|+.-.-..+.++++.+- +.+-++-..|.
T Consensus 89 ~~ll~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 89 YGLLSMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred cCceEEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 899876543 1344332 469999998755555666665543 33444444443
No 152
>PRK03705 glycogen debranching enzyme; Provisional
Probab=38.56 E-value=49 Score=40.76 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEE-eeeCCccCCcC---C-----eee----------ecC-----chhHHHHHHHHHHcCCEEEeec
Q 035496 65 LIQKAKRGGLNVIQT-YVFWNIHEPVQ---G-----QYN----------FQG-----QYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~d----------F~g-----~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.|.-+|++|+|+|+. +|+=...++.. | -|| |.. ..+|.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 45422112110 1 011 222 2479999999999999999875
No 153
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=38.13 E-value=57 Score=36.68 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee----CCccCCc------C-----------Cee
Q 035496 35 GRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF----WNIHEPV------Q-----------GQY 93 (833)
Q Consensus 35 ~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~-----------G~~ 93 (833)
-|+|+||=.| ||+ +.+..++.|+.|-..++|++..++- |.+.-+. . |.|
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 3566666554 443 7788999999999999999999884 6543221 2 233
Q ss_pred eecCchhHHHHHHHHHHcCCEEEeec
Q 035496 94 NFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 94 dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
. ..++..+++.|++.|+.||--+
T Consensus 73 T---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 T---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred C---HHHHHHHHHHHHHcCCEEEEec
Confidence 3 3499999999999999999765
No 154
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=37.39 E-value=15 Score=32.58 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=27.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcC
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHG 112 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~g 112 (833)
....|-.-+|.+.. .||.|..|||. +|.+||++|-|--
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTp 57 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTP 57 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCC
Confidence 44568877777765 48999999999 9999999998743
No 155
>PLN02877 alpha-amylase/limit dextrinase
Probab=36.88 E-value=60 Score=41.59 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 035496 99 YDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.++.++++.|+++||.|||--
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999875
No 156
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=36.69 E-value=61 Score=36.69 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=66.2
Q ss_pred EEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHH
Q 035496 77 IQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMK 156 (833)
Q Consensus 77 V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~ 156 (833)
|.+.|.|+.+--+. -=...|+.|+++|+.|+--. .-||+ +-+.|+.. + +.. ++ +...
T Consensus 33 vD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~~-~~---~~~~ 89 (339)
T cd06547 33 VDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LKK-DE---DGSF 89 (339)
T ss_pred hheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hcc-Cc---ccch
Confidence 67777788643220 11345889999999997432 23665 34556654 1 221 11 1234
Q ss_pred HHHHHHHHHhhhcccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhhcC--CCccceEE
Q 035496 157 KYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGM--NIGVPWVM 221 (833)
Q Consensus 157 ~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 221 (833)
++.++|++..+.+.+ .| +.+-+||..+... ....-++|++.|++.+++. +..|-|+-
T Consensus 90 ~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 90 PVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred HHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 567777777775443 33 7788888873110 1124557788888888763 44556663
No 157
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.42 E-value=60 Score=36.42 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=51.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCc--hhHHHHHHHHHHcCCEEEeecCccccc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQ--YDLVKFIKMIGEHGMYASLRLGPFIQA 125 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyica 125 (833)
+|..|+ ..+..++.++++++.|+-.=.+.+-+.... .-+.|+|.-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455554 455568899999999987655554444333 3345666533 278999999999999999998777753
No 158
>PLN00196 alpha-amylase; Provisional
Probab=36.36 E-value=75 Score=37.11 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCEEEEe-eeCCc--cCCcCCe-ee-----ecCchhHHHHHHHHHHcCCEEEeecCcc
Q 035496 63 PDLIQKAKRGGLNVIQTY-VFWNI--HEPVQGQ-YN-----FQGQYDLVKFIKMIGEHGMYASLRLGPF 122 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----F~g~~dl~~fl~~a~~~gL~Vilr~GPy 122 (833)
.+.|.-+|++|+++|-+. ++=+. |---+.. |+ |....+|.++++.|+++||+||+-.=+-
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~N 115 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVIN 115 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 467888899999999885 33221 2112211 22 3445799999999999999999876433
No 159
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.82 E-value=1.6e+02 Score=27.98 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=39.7
Q ss_pred EEEEEEEecCCCCCccCCCCCCCeEEeCCcceEEEEEECCEEEEEEecccC-----CceeEEEeccccCCC-CcEEEEEE
Q 035496 478 YAWYSMIITLGRGDLPMRANASPVLIVASLGHALVAFVNGEYVGNGHGSHL-----DKSFVFRKPIKLKEG-PNHIQILG 551 (833)
Q Consensus 478 yllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 551 (833)
.+.|++.|..+.++. -.+.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 556888887654321 233333 5789999999999977664322 000111222334444 77888876
Q ss_pred eccC
Q 035496 552 SVVG 555 (833)
Q Consensus 552 En~G 555 (833)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5554
No 160
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.10 E-value=60 Score=35.27 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeCC--ccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWN--IHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
++.+++||++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999998875511 122222234555 666789999999998653
No 161
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.91 E-value=89 Score=33.87 Aligned_cols=90 Identities=16% Similarity=0.314 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcC--CEEEeecCcccc-------cccCCCCCCc
Q 035496 64 DLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHG--MYASLRLGPFIQ-------AEWNHGGLPY 134 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~g--L~Vilr~GPyic-------aEw~~GG~P~ 134 (833)
++|++=.++|.+.+-|-.+.+ .+ .+.+|++.|++.| +.||+..-|-.. ++|-.-++|.
T Consensus 151 ~~L~~Ki~aGA~f~iTQ~~fd----------~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~ 217 (274)
T cd00537 151 KRLKRKVDAGADFIITQLFFD----------ND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPD 217 (274)
T ss_pred HHHHHHHHCCCCEEeeccccc----------HH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCH
Confidence 444444567999999977754 33 7899999999998 557777666544 3566667899
Q ss_pred eeccc-CCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 135 WLREV-QNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 135 WL~~~-p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
|+.+. .. ...+....++.-.++..++++.+.+
T Consensus 218 ~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 218 WLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99862 11 1122334556677778888887774
No 162
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=31.69 E-value=77 Score=35.12 Aligned_cols=88 Identities=16% Similarity=0.283 Sum_probs=60.1
Q ss_pred HHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCE--EEeecCcccc-------cccCCCCCCce
Q 035496 65 LIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMY--ASLRLGPFIQ-------AEWNHGGLPYW 135 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr~GPyic-------aEw~~GG~P~W 135 (833)
.|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |+..+-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555688888887665 4455 899999999999954 6665555321 57778889999
Q ss_pred ecc-cCCeEecCCC-hhHHHHHHHHHHHHHHHhhh
Q 035496 136 LRE-VQNITFRSDN-EPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 136 L~~-~p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 168 (833)
|.+ ... . .+| +..+++--++..++++.|.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 986 221 1 133 34566677788888888774
No 163
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=31.53 E-value=6.6e+02 Score=27.80 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=80.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLR 137 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (833)
.-+.-+-+|+.+|.-+. +|++|-- | -.-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~s-----------D---Cn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYGS-----------D---CNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEeec-----------c---chhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999998887 9999951 1 2278899999999999999886 333
Q ss_pred ccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhccccHHHHHHHHHHhhcCCCcc
Q 035496 138 EVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 138 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
. ++ . ..+++ .++..+.+ +..--.|..+-|-||-=...+.-...--+|+...|.+++++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11 1 22222 33333332 122247888999999643221111245689999999999999999
Q ss_pred ceEEeccC
Q 035496 218 PWVMCKQK 225 (833)
Q Consensus 218 p~~~~~~~ 225 (833)
|+.+.++.
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 99887664
No 164
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.32 E-value=90 Score=35.21 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=49.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCCEEEEee----------eCCccCCc---------CCeeeecCc---hhHHHHHH
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLNVIQTYV----------FWNIHEPV---------QGQYNFQGQ---YDLVKFIK 106 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~dF~g~---~dl~~fl~ 106 (833)
+|..|. ..+.-++.++++++.||..=-+++ .|+-..-. =+.++|... -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 445567889999999997766554 24422111 123334311 27999999
Q ss_pred HHHHcCCEEEeecCcccc
Q 035496 107 MIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 107 ~a~~~gL~Vilr~GPyic 124 (833)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 165
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=31.05 E-value=61 Score=37.62 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-eee---CCccCCcCC---ee--eecCchhHHHHHHHHHHcCCEEEeec
Q 035496 64 DLIQKAKRGGLNVIQT-YVF---WNIHEPVQG---QY--NFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G---~~--dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+.|.-+|.+|+++|-+ .++ -..|---.- +. .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999954 233 111111000 00 67888999999999999999999764
No 166
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=31.00 E-value=83 Score=28.06 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=25.5
Q ss_pred cCCceEEeccccc-ccchhhhhc-----cccHHHHHHHHHHh---hcCCCccceEE
Q 035496 175 QGGPIILVQIENE-YSTIQLAYR-----EKGNKYVQWTGNLA---VGMNIGVPWVM 221 (833)
Q Consensus 175 ~gGpII~~QiENE-yg~~~~~~~-----~~~~~y~~~l~~~~---~~~g~~vp~~~ 221 (833)
....|.+|+|=|| -+.....+. .....|.+||++++ |+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 4568999999999 552211111 12456666666664 55677778654
No 167
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.34 E-value=3e+02 Score=29.75 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEE--EeecCcccccccCCCCCCceecccC
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYA--SLRLGPFIQAEWNHGGLPYWLREVQ 140 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~p 140 (833)
.+.++.+++.|+++|++++-.. +--........+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSP----RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCc----cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 5689999999999999976411 100011111237888889999998863 33334442
Q ss_pred CeEecCCChhHHHHHHHHHHHHHHHhh
Q 035496 141 NITFRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 141 ~~~~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
+-+-+.|+.-+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12445577777777676666666555
No 168
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.98 E-value=79 Score=36.32 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=64.3
Q ss_pred eEEEeCCeEEECCEEeEEEEEEeeCCC-CCcccHHHHHHHHHHc-CCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHH
Q 035496 30 GVTYDGRSLIINGKREILFSGSIHYTR-STPDMWPDLIQKAKRG-GLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKM 107 (833)
Q Consensus 30 ~v~~d~~~~~i~G~~~~~~sG~~Hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~ 107 (833)
.|-+-+-+|-+...+-....=|+.|+- .|.+.|+-+|..+.++ -=||+.+-|- |=+.|-=++|+-. .|.+++++
T Consensus 152 NILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~ 227 (447)
T KOG0259|consen 152 NILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAET 227 (447)
T ss_pred ceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHH
Confidence 344444455555444444555665555 5888899999999987 7899988664 7788888999888 99999999
Q ss_pred HHHcCCEEEee
Q 035496 108 IGEHGMYASLR 118 (833)
Q Consensus 108 a~~~gL~Vilr 118 (833)
|+++||-||--
T Consensus 228 A~klgi~vIaD 238 (447)
T KOG0259|consen 228 AKKLGIMVIAD 238 (447)
T ss_pred HHHhCCeEEeh
Confidence 99999998864
No 169
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=28.83 E-value=2.5e+02 Score=31.75 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=53.0
Q ss_pred CCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee----CCccCC------cCC------eeeecCc
Q 035496 35 GRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF----WNIHEP------VQG------QYNFQGQ 98 (833)
Q Consensus 35 ~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G------~~dF~g~ 98 (833)
.|+|+||=.| |++ +.+..++.|+.|-...+|++..++- |.+--+ +.| .|.-
T Consensus 3 ~RG~mlDvaR--------~f~--~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~--- 69 (348)
T cd06562 3 HRGLLLDTSR--------HFL--SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP--- 69 (348)
T ss_pred ccceeeeccc--------cCC--CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---
Confidence 3566666544 553 5788899999999999999998864 554322 123 3433
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 035496 99 YDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.|+..+++.|++.|+.||.-+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEec
Confidence 499999999999999999765
No 170
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=28.74 E-value=1.7e+02 Score=32.73 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCeE
Q 035496 64 DLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNIT 143 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~ 143 (833)
..+...++.|.+||=.--.= .-.||..+..+.+++.||.++..+|+|.-+.|+ .|+..-|
T Consensus 52 ~e~~~~~a~Gg~TIVD~T~~------------~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDATNI------------GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeCCcc------------ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 35666777899888532210 112699999999999999999999999988885 6765432
Q ss_pred ecCCChhHHHHHHHHHHHHHHHhh
Q 035496 144 FRSDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 144 ~R~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
++.+.+.+++.++
T Consensus 112 -----------i~~~ae~~v~ei~ 124 (316)
T COG1735 112 -----------IEELAEFVVKEIE 124 (316)
T ss_pred -----------HHHHHHHHHHHHH
Confidence 4555566666665
No 171
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=27.92 E-value=2.1e+02 Score=35.45 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEee---------------eCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYV---------------FWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQ 124 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv---------------~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyic 124 (833)
+--...|+.+|++|+|||-.-+ +| -|=| |+-|.=. -+ ..+++.+.|+.|..|-.||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f~--~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLFN--RV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCcC--HH--HHHHHHhhCCEEEEeccceee
Confidence 3456789999999999996544 56 3333 3333210 12 234488999999999999953
Q ss_pred c---------ccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccc
Q 035496 125 A---------EWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEY 188 (833)
Q Consensus 125 a---------Ew~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 188 (833)
. +++..+-|+....+. -.| =.+|..++++|+..|.+.|+.+ .+|=++|.+.+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIHPEQ--YRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccCCCC--CcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 1 222122222111100 012 2356788999999999999853 255566665554
No 172
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.48 E-value=1.6e+02 Score=31.94 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCe
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGGLPYWLREVQNI 142 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~ 142 (833)
.++++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+-+ ..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~---------------------~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL---------------------MA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE---------------------Ee
Q ss_pred EecCCChhHHHHHHHHHH
Q 035496 143 TFRSDNEPFKYHMKKYVT 160 (833)
Q Consensus 143 ~~R~~~~~y~~~~~~~~~ 160 (833)
-.|.+...+.+.+++..+
T Consensus 132 a~~~~~~~~~~~~~~~~~ 149 (266)
T cd07944 132 ISGYSDEELLELLELVNE 149 (266)
T ss_pred ecCCCHHHHHHHHHHHHh
No 173
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.34 E-value=1.9e+02 Score=32.37 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=52.2
Q ss_pred CeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee----CCccC---Cc---CC----eeeecCchhH
Q 035496 36 RSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF----WNIHE---PV---QG----QYNFQGQYDL 101 (833)
Q Consensus 36 ~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE---p~---~G----~~dF~g~~dl 101 (833)
|+|+||=.| |+ .+.+..++.|+.|....+|+...++- |-+-- |+ .| .|.- .|+
T Consensus 4 RG~mlD~aR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di 70 (311)
T cd06570 4 RGLLIDVSR--------HF--IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQI 70 (311)
T ss_pred cCeEEecCC--------CC--cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHH
Confidence 456665444 44 46888999999999999999999973 75321 11 22 3333 499
Q ss_pred HHHHHHHHHcCCEEEeec
Q 035496 102 VKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 102 ~~fl~~a~~~gL~Vilr~ 119 (833)
..+++.|++.|+.||.-+
T Consensus 71 ~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 71 REVVAYARDRGIRVVPEI 88 (311)
T ss_pred HHHHHHHHHcCCEEEEee
Confidence 999999999999999765
No 174
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.15 E-value=1.2e+02 Score=34.28 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=55.8
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCe-eeecCchhHHHHHHHHHHcCCEEEeecCcccccc
Q 035496 48 FSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQ-YNFQGQYDLVKFIKMIGEHGMYASLRLGPFIQAE 126 (833)
Q Consensus 48 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (833)
++=++.+.|.+.+.=..-|++|...|+..| |=++|.|.+.. --|. -+...++.|+++|++||+-.-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~I----Ftsl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRI----FTSLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccce----eeecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 566788888888877888999999999665 55667776652 2233 788999999999999999987766444
No 175
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.10 E-value=2.3e+02 Score=30.43 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=56.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCc-CCeee---e-cCchhHHHHHHHHHHcCCEEEeecCcccccccCCCC
Q 035496 57 STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPV-QGQYN---F-QGQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHGG 131 (833)
Q Consensus 57 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~d---F-~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG 131 (833)
+.++.-+...+.+++.|+..+.+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 4556666777788899998766421 122211 11100 0 0112578899999999999764321
Q ss_pred CCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEeccccccc
Q 035496 132 LPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYS 189 (833)
Q Consensus 132 ~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 189 (833)
.+.|. ...++...+.....++.|++..+++ | |-+.+||-.+
T Consensus 121 ~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYY--------EQANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred ccccc--------cccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 11121 1122344455555667777776642 3 4566788643
No 176
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=27.02 E-value=53 Score=34.47 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=18.7
Q ss_pred CeEEEe----CCCceEEEEECCeeeeeee
Q 035496 639 PIAIQM----NRMGKGMIWINGQSIGRYW 663 (833)
Q Consensus 639 ~~fLd~----~g~gKG~vwVNG~nLGRYW 663 (833)
.|||.| .--.+|.|||||++|.|.=
T Consensus 42 STllkLi~~~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 42 STLLKLIYGEERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred HHHHHHHHhhhcCCCceEEECCeeccccc
Confidence 455554 2346799999999999975
No 177
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.94 E-value=2.5e+02 Score=29.58 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHHcCCCE-EEE--eeeCCccCC---cCC--eeeec-----------C--chhHHHHHHHHHHcCCEEEe
Q 035496 59 PDMWPDLIQKAKRGGLNV-IQT--YVFWNIHEP---VQG--QYNFQ-----------G--QYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G--~~dF~-----------g--~~dl~~fl~~a~~~gL~Vil 117 (833)
++.-.+.++++|+.|+.+ |+| |++|...+. .=. -+|+- | +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 355678899999999864 333 344422221 111 23332 2 23455667788888998888
Q ss_pred ecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchh-----
Q 035496 118 RLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQ----- 192 (833)
Q Consensus 118 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~----- 192 (833)
|. |. .|++ ++++.-++++.+|+..+. +. +|-...- +-+|...
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpy-h~~g~~Ky~~lg 179 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPF-HQYGEPKYRLLG 179 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecC-CccchhHHHHcC
Confidence 86 11 3553 345666666666655431 11 1111111 1111100
Q ss_pred -----hhhccccHHHHHHHHHHhhcCCCcc
Q 035496 193 -----LAYREKGNKYVQWTGNLAVGMNIGV 217 (833)
Q Consensus 193 -----~~~~~~~~~y~~~l~~~~~~~g~~v 217 (833)
........+.|+++++.+++.|+.+
T Consensus 180 ~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 0112467899999999999999876
No 178
>PRK06703 flavodoxin; Provisional
Probab=26.26 E-value=2.9e+02 Score=26.77 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=61.1
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeec---CchhHHHHHHHHHHcCCEEE
Q 035496 40 INGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQ---GQYDLVKFIKMIGEHGMYAS 116 (833)
Q Consensus 40 i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---g~~dl~~fl~~a~~~gL~Vi 116 (833)
+.....++++...|-.-.+|..+.+-+..+++.-++.....+|-. +|++ .......+-++.++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 344455666554453344566678788888776666666666632 2221 12345667777889999888
Q ss_pred eecCcccccccCCCCCCceecccCCeEec--CCChhHHHHHHHHHHHHHHHhh
Q 035496 117 LRLGPFIQAEWNHGGLPYWLREVQNITFR--SDNEPFKYHMKKYVTMIIKKMK 167 (833)
Q Consensus 117 lr~GPyicaEw~~GG~P~WL~~~p~~~~R--~~~~~y~~~~~~~~~~l~~~l~ 167 (833)
.++ +++. .++..-+++++.|.++|++.++
T Consensus 118 ~~~----------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEG----------------------LKIELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccC----------------------eEEecCCCchhHHHHHHHHHHHHHHHHH
Confidence 764 1111 1234677888899999988776
No 179
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.83 E-value=1.2e+02 Score=33.51 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCC--cCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP--VQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.++..++.++++++.|.+.|-+|.-+..--+ .++.-.++ ...+.+++++|+++|+.|.+=.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677889999999999999999975432111 12211222 2378899999999999877653
No 180
>PLN02784 alpha-amylase
Probab=25.80 E-value=1.4e+02 Score=37.91 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCC--eee-------ecCchhHHHHHHHHHHcCCEEEeec
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQG--QYN-------FQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.+.|..++++|+++|-+.=+.....+ .| .+| |....+|..+|+.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35678889999999988643222211 12 122 3345799999999999999999875
No 181
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.65 E-value=1.4e+02 Score=24.08 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 035496 59 PDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYA 115 (833)
Q Consensus 59 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~V 115 (833)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999999986 3333334555666533 4889999999999765
No 182
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.48 E-value=6.5e+02 Score=26.49 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEe
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASL 117 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vil 117 (833)
...-+++.+++++++|+..|++.- .+.+..+. .+++.+.++++++||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEe
Confidence 445689999999999999999876 11222211 1389999999999999764
No 183
>PRK09267 flavodoxin FldA; Validated
Probab=25.32 E-value=5.2e+02 Score=25.54 Aligned_cols=74 Identities=7% Similarity=0.054 Sum_probs=48.8
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 035496 40 INGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS 116 (833)
Q Consensus 40 i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi 116 (833)
+..-..++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34556788999999878778899999998888777777777773 21111100112 1235667777888896654
No 184
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.94 E-value=82 Score=33.67 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCc----CCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPV----QGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.+++.++.++++|..+|.+ |..+... +-.+... ...|..+.++|+++|+.+.+-+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 4566788999999999855 3223221 1122222 1368999999999999999887
No 185
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.63 E-value=1.1e+02 Score=37.94 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCEEEE-eeeCCccCCcC---C-eeee----------------cC-----chhHHHHHHHHHHcCCEEEee
Q 035496 65 LIQKAKRGGLNVIQT-YVFWNIHEPVQ---G-QYNF----------------QG-----QYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-~~dF----------------~g-----~~dl~~fl~~a~~~gL~Vilr 118 (833)
.|.-+|.+|+++|+. +|+.-..|+.. | .|+| ++ .+.|..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388999999999997 68866665543 2 2332 22 247888999999999999987
Q ss_pred c
Q 035496 119 L 119 (833)
Q Consensus 119 ~ 119 (833)
-
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 186
>PLN02389 biotin synthase
Probab=24.58 E-value=98 Score=35.58 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHcCCCEEEEeee--CCccCCcCCeeeecCchhHHHHHHHHHHcCCEEE
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVF--WNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYAS 116 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vi 116 (833)
.=++.++++|++|++.+..-+- ...+...-..-+|+ +..+.++.|++.||.|.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 3468899999999998766322 22222111122555 66788999999999863
No 187
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.34 E-value=1.6e+02 Score=34.65 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=45.7
Q ss_pred eeCCCCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 52 IHYTRSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 52 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.-|-+.|.+.-++.++++.++|++.|+++..-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34656677778889999999999999999987643 268889999999999876653
No 188
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=24.19 E-value=1.6e+02 Score=36.33 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEe-ee-----CC--ccCCcCCeeee---------cCchhHHHHHHHHHHcCCEEEeecC
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTY-VF-----WN--IHEPVQGQYNF---------QGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~y-v~-----Wn--~hEp~~G~~dF---------~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
.+..|+ .++.+|+++|-+- ++ |. ..--..|-||- ....|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 556666 6899999999863 33 43 22223466763 3447999999999999999997642
Q ss_pred --------cccccccCCCCCCcee
Q 035496 121 --------PFIQAEWNHGGLPYWL 136 (833)
Q Consensus 121 --------PyicaEw~~GG~P~WL 136 (833)
||.-||.+.+-.|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 2555566655556555
No 189
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.16 E-value=4.1e+02 Score=28.56 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.+.++++++.|++.|+++++.+.. ..+...++.|++.|+.|.+-+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999999887731 267889999999999887765
No 190
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.08 E-value=1.9e+02 Score=35.15 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcC--CEEEeecCcccc-------cccCCCCCCce
Q 035496 65 LIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHG--MYASLRLGPFIQ-------AEWNHGGLPYW 135 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~g--L~Vilr~GPyic-------aEw~~GG~P~W 135 (833)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.| +.||..+-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444689999999776 5555 7889999999998 667777777654 35766668999
Q ss_pred ecc-cCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 136 LRE-VQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 136 L~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
+.+ -.. ...++...++.-.++..+++++|.+
T Consensus 228 i~~rLe~--~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALEP--IKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 986 221 2345566677777888888888874
No 191
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=23.97 E-value=1.2e+02 Score=38.14 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=47.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHcCCC--EEEEeeeCCccCCcCCeeeecC----chhHHHHHHHHHHcCCEEEeecCcc
Q 035496 52 IHYTRS---TPDMWPDLIQKAKRGGLN--VIQTYVFWNIHEPVQGQYNFQG----QYDLVKFIKMIGEHGMYASLRLGPF 122 (833)
Q Consensus 52 ~Hy~r~---~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~g----~~dl~~fl~~a~~~gL~Vilr~GPy 122 (833)
+|..|+ .-+.-+++.+.+++||+. ++-+-+.|. ++.=||+- -.++..|++-.++.|+++++-+-|+
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~ 374 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPF 374 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCc
Confidence 445554 333457899999999997 444445554 44334431 1368899999999999999998888
Q ss_pred ccc
Q 035496 123 IQA 125 (833)
Q Consensus 123 ica 125 (833)
|..
T Consensus 375 is~ 377 (805)
T KOG1065|consen 375 IST 377 (805)
T ss_pred ccc
Confidence 753
No 192
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=23.95 E-value=1e+02 Score=33.17 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=31.1
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHcCCCEE
Q 035496 39 IINGKREILFSGSIHYTRS-TPDMWPDLIQKAKRGGLNVI 77 (833)
Q Consensus 39 ~i~G~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V 77 (833)
.+.|+++..+.|..|+..- ...+-+--++.||++|+..|
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~i 86 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETL 86 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEE
Confidence 4679999999999997654 44444778999999999665
No 193
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.92 E-value=95 Score=33.26 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCCcC-CeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQ-GQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+++++.++.++++|.+.|.+.-+-...++.. -.++. -...|..++++|+++|+.+.+-+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4467888999999999998631100011111 11111 11368888999999999999887
No 194
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.91 E-value=1.8e+02 Score=31.80 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEee
Q 035496 57 STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 57 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr 118 (833)
.|.+.=+++++++.+.|+..|+++++.+- + ..+...++.|++.|+.|.+-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 45556788999999999999999998764 2 37888999999999987753
No 195
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.40 E-value=1.9e+02 Score=32.94 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
.|..-|+.+++.|++.|.-+...-.-....+. + -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999876654322221111111 2 24688999999999999876
No 196
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.30 E-value=5.5e+02 Score=25.19 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=64.9
Q ss_pred CeeeecCchh-HHHHHHHHHHc-CCEEEeecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhh
Q 035496 91 GQYNFQGQYD-LVKFIKMIGEH-GMYASLRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKD 168 (833)
Q Consensus 91 G~~dF~g~~d-l~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 168 (833)
|.|=++.... +..|++...+. ..-+|.|--|=..-++ +...-||.+.++- ++=+|.-+...... +.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l~~~---i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKLLDT---IVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHHHHH---HHHHHH-
Confidence 5566664433 77888887555 4678889545444444 5566799986532 45566655544333 333343
Q ss_pred cccccccCCceEEec------ccccccchhhhhccccHHHHHHHHHHhhcCCCc
Q 035496 169 EKLFASQGGPIILVQ------IENEYSTIQLAYREKGNKYVQWTGNLAVGMNIG 216 (833)
Q Consensus 169 ~~~~~~~gGpII~~Q------iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 216 (833)
.+++.||.+. +||.+- .--+|+..|+|.+...+-.
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGT 113 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCE
Confidence 2355688887 566653 3457999999998765444
No 197
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.11 E-value=3.5e+02 Score=31.65 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=58.6
Q ss_pred CeEEECCEEeEEEEEEeeCCCCCc---ccHHHHHHHHHHcCCCE--E--EEeeeCCccCCcCCeeeecCchhHHHHHHHH
Q 035496 36 RSLIINGKREILFSGSIHYTRSTP---DMWPDLIQKAKRGGLNV--I--QTYVFWNIHEPVQGQYNFQGQYDLVKFIKMI 108 (833)
Q Consensus 36 ~~~~i~G~~~~~~sG~~Hy~r~~~---~~W~~~l~k~ka~G~N~--V--~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a 108 (833)
++..+++.-|+++.+.-+-++.++ +.-+.-.+.+++.|++. | ...-.-|+-.|.+..++++ ..-+..-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 456677788888988877666432 33344456677788763 2 2222278888888888887 44677888999
Q ss_pred HHcCCE-EEeecC
Q 035496 109 GEHGMY-ASLRLG 120 (833)
Q Consensus 109 ~~~gL~-Vilr~G 120 (833)
.+.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 667787
No 198
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=23.00 E-value=1.3e+02 Score=33.41 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee----CCccCC------cCC---------eeeecCchhHHHHHHHHHHcCCEEEee
Q 035496 58 TPDMWPDLIQKAKRGGLNVIQTYVF----WNIHEP------VQG---------QYNFQGQYDLVKFIKMIGEHGMYASLR 118 (833)
Q Consensus 58 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~dF~g~~dl~~fl~~a~~~gL~Vilr 118 (833)
+.+.-++.|+.|-..++|++..++- |.+--+ ..| .|.-+ |+..+++.|++.||.||.-
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceeee
Confidence 6777889999999999999999886 443221 122 34444 9999999999999999965
Q ss_pred c
Q 035496 119 L 119 (833)
Q Consensus 119 ~ 119 (833)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 199
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=23.00 E-value=3.4e+02 Score=27.87 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHcCCEEEeecCcccccccCC-----C--CCCceecccCC
Q 035496 99 YDLVKFIKMIGEHGMYASLRLGPFIQAEWNH-----G--GLPYWLREVQN 141 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~-----G--G~P~WL~~~p~ 141 (833)
..+..|++.+++.|.+++|=.+++-....-. . ..|.||.+++.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3577899999999988777776653322111 1 13589988754
No 200
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.94 E-value=1.1e+02 Score=34.69 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=44.0
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 56 RSTPDMWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 56 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
|.+...=....+.++++|-++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 55444433446789999999999999999443310 011123479999999999999988864
No 201
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.81 E-value=6.7e+02 Score=26.41 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCccCCcCC-eeeec-CchhHHHHHHHHHHcCCEEEeecCcccccccCCC-CCCceeccc
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIHEPVQG-QYNFQ-GQYDLVKFIKMIGEHGMYASLRLGPFIQAEWNHG-GLPYWLREV 139 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G-~~dF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~G-G~P~WL~~~ 139 (833)
++.++.|+++|++++.+ | .-.|+ |..-|.+.++.+++.|+ ||+++--+.. ..|.-+.+.
T Consensus 63 ~~~~~~l~~~G~d~~~l-----------aNNH~fD~G~~gl~~t~~~l~~a~i-------~~~g~~~~~~~~~~~~i~~~ 124 (239)
T smart00854 63 PENAAALKAAGFDVVSL-----------ANNHSLDYGEEGLLDTLAALDAAGI-------AHVGAGRNLAEARKPAIVEV 124 (239)
T ss_pred HHHHHHHHHhCCCEEEe-----------ccCcccccchHHHHHHHHHHHHCCC-------CEeeCCCChHHhhCcEEEEE
Q ss_pred CCeEe----------------------cCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecccccccchhhhhcc
Q 035496 140 QNITF----------------------RSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQIENEYSTIQLAYRE 197 (833)
Q Consensus 140 p~~~~----------------------R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~ 197 (833)
.++++ ...++...+.+.++++++-+. . .+ -|++.+.-.||..
T Consensus 125 ~g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~--D~------vIv~~H~G~e~~~------- 188 (239)
T smart00854 125 KGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKK-A--DV------VIVSLHWGVEYQY------- 188 (239)
T ss_pred CCEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-C--CE------EEEEecCccccCC-------
Q ss_pred ccHHHHHHHHHHhhcCCCccce
Q 035496 198 KGNKYVQWTGNLAVGMNIGVPW 219 (833)
Q Consensus 198 ~~~~y~~~l~~~~~~~g~~vp~ 219 (833)
....+.+.+.+.+.+.|+++-+
T Consensus 189 ~p~~~~~~~A~~l~~~G~DvIi 210 (239)
T smart00854 189 EPTDEQRELAHALIDAGADVVI 210 (239)
T ss_pred CCCHHHHHHHHHHHHcCCCEEE
No 202
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=22.65 E-value=1.5e+02 Score=32.22 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 64 DLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 64 ~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
-...++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 vS~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIG-----HSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred cCHHHHHHCCCCEEEeC-----cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 34568999999877764 44444444322 23344444459999999999997
No 203
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=22.46 E-value=8.5e+02 Score=28.12 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=85.7
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEeeCCCCCc--ccHHHHHHHHHHc-CC-CEEEEeeeCCccCCcCCeeeecCchhHHHH
Q 035496 29 LGVTYDGRSLIINGKREILFSGSIHYTRSTP--DMWPDLIQKAKRG-GL-NVIQTYVFWNIHEPVQGQYNFQGQYDLVKF 104 (833)
Q Consensus 29 ~~v~~d~~~~~i~G~~~~~~sG~~Hy~r~~~--~~W~~~l~k~ka~-G~-N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~f 104 (833)
..|..-+..|.-.|.||-. ++.+=.++ +...+++.+++.+ ++ -.|+..++| +.. .|+.++
T Consensus 11 ~~~~~~~w~~~~~~tRf~~----f~~~g~~r~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~ 74 (378)
T TIGR02635 11 LKIETPSWAYGNSGTRFKV----FHQEGAARNVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEEL 74 (378)
T ss_pred cEeeccccccCCCCccccc----CCCCCCCCCHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHH
Confidence 4466666677777777643 22222233 3344555555554 22 355555556 222 368899
Q ss_pred HHHHHHcCCEEE-eecCcccccccCCCCCCceecccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceE-Ee
Q 035496 105 IKMIGEHGMYAS-LRLGPFIQAEWNHGGLPYWLREVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPII-LV 182 (833)
Q Consensus 105 l~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII-~~ 182 (833)
.++++++||.|. +-|+-+- -|.+ ..+ -|-..|+..++.+-.+..+.++.-+. + |.+.| .|
T Consensus 75 ~~~l~~~GL~v~~i~p~~f~--------~~~~---~~G-SLt~pD~~vR~~AIe~~k~~idiA~e--L----Ga~~I~iW 136 (378)
T TIGR02635 75 ARYAEELGLKIGAINPNLFQ--------DDDY---KFG-SLTHPDKRIRRKAIDHLLECVDIAKK--T----GSKDISLW 136 (378)
T ss_pred HHHHHHcCCceeeeeCCccC--------Cccc---CCC-CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCeEEEe
Confidence 999999999988 7775221 1111 112 36677899988887777777766652 3 55444 34
Q ss_pred ccc-ccccchhhhhccccHHHHHHHHHHhhcCCCccceE
Q 035496 183 QIE-NEYSTIQLAYREKGNKYVQWTGNLAVGMNIGVPWV 220 (833)
Q Consensus 183 QiE-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 220 (833)
=-+ -+|.... .+...-+.+.+.|++++...+-++.+.
T Consensus 137 ~~DG~~~~g~~-~~~~a~~rl~esL~eI~~~~~~~v~~~ 174 (378)
T TIGR02635 137 LADGTNYPGQD-DFRSRKDRLEESLAEVYEHLGADMRLL 174 (378)
T ss_pred cCCcCcCCccc-CHHHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 111 1222111 122223556677888876543344433
No 204
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.38 E-value=1.6e+02 Score=31.67 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCEEEeecC
Q 035496 65 LIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYASLRLG 120 (833)
Q Consensus 65 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (833)
...++|++|++.|-+. |..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~viiG-----HSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVIIG-----HSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEeC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568999999877664 33333333333 56888999999999999999997
No 205
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.26 E-value=58 Score=34.08 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=51.7
Q ss_pred EEeEEEEEEeeCCC-CCcccHHHHHHHHHHcCCCEEEEeeeCCccC--------CcCC----eeeecCchhHHHHHHHHH
Q 035496 43 KREILFSGSIHYTR-STPDMWPDLIQKAKRGGLNVIQTYVFWNIHE--------PVQG----QYNFQGQYDLVKFIKMIG 109 (833)
Q Consensus 43 ~~~~~~sG~~Hy~r-~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE--------p~~G----~~dF~g~~dl~~fl~~a~ 109 (833)
+-+.+.-|.-+..| |+.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.+.+
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 33444445545444 79999999999999998 56678887666 1233 688989899999999999
Q ss_pred HcCCEEEeecCc
Q 035496 110 EHGMYASLRLGP 121 (833)
Q Consensus 110 ~~gL~Vilr~GP 121 (833)
...+.|-.-.||
T Consensus 183 ~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 183 RADLVIGNDTGP 194 (247)
T ss_dssp TSSEEEEESSHH
T ss_pred cCCEEEecCChH
Confidence 999988888775
No 206
>PRK10658 putative alpha-glucosidase; Provisional
Probab=22.09 E-value=1.9e+02 Score=35.83 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCccCC-cCCeeeecCch--hHHHHHHHHHHcCCEEEeecCccccc
Q 035496 60 DMWPDLIQKAKRGGLNVIQTYVFWNIHEP-VQGQYNFQGQY--DLVKFIKMIGEHGMYASLRLGPFIQA 125 (833)
Q Consensus 60 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~g~~--dl~~fl~~a~~~gL~Vilr~GPyica 125 (833)
+...+.++++|+.|+-.=.+.+-+.++.. .-+.|.|+-.+ |..++++..++.|++|++..=|||..
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 34567789999999864333332222332 12456655322 78999999999999999999998853
No 207
>PRK07094 biotin synthase; Provisional
Probab=21.85 E-value=79 Score=34.98 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEEeee---CCccCCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 035496 63 PDLIQKAKRGGLNVIQTYVF---WNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMYA 115 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~V 115 (833)
++.+++||++|++.|.+.+- -..++..-...+++ +..+.++.+++.|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 56788888889888876542 22222222234455 7778899999999864
No 208
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.85 E-value=4.9e+02 Score=30.45 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCEEEEeee----CCccCCcCCeeeecCchhHHHHHHHHHHcCCE--EEeecCcccccccCCCCCCcee
Q 035496 63 PDLIQKAKRGGLNVIQTYVF----WNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMY--ASLRLGPFIQAEWNHGGLPYWL 136 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~GG~P~WL 136 (833)
...++.+.+.|+|+++++.- |..-+..+ .++++|.+.++++||. .++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 44778899999999999974 65444333 3799999999999885 244456663
Q ss_pred cccCCeEecCCChhHHHHHHHHHHHHHHHhhhcccccccCCceEEecc
Q 035496 137 REVQNITFRSDNEPFKYHMKKYVTMIIKKMKDEKLFASQGGPIILVQI 184 (833)
Q Consensus 137 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (833)
+-+-+.|+.-++...+++.+-+.+-+. + |-+.+.++.
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~~--L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCEQ--L----GIKLYNFHP 239 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECC
Confidence 113455666666666665555555542 2 445555553
No 209
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=21.29 E-value=2.2e+02 Score=29.79 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=42.0
Q ss_pred EEEEeeCCCCCccc--HHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHc-CCEEE-eecCc
Q 035496 48 FSGSIHYTRSTPDM--WPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEH-GMYAS-LRLGP 121 (833)
Q Consensus 48 ~sG~~Hy~r~~~~~--W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~-gL~Vi-lr~GP 121 (833)
+=+++|.|..+|+. |.+.+++|++.|.+.|.+-+.=+ +.+....|..|++.+++. +..+| +.-|+
T Consensus 116 iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~---------~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 116 IILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMAN---------SPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp EEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-S---------SHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccC---------CHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 45789988876666 78999999999999999876533 223333566666666654 67766 66553
No 210
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.92 E-value=69 Score=32.58 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHc-CCEEEeecCccccccc---CCCCCCceecccCC
Q 035496 99 YDLVKFIKMIGEH-GMYASLRLGPFIQAEW---NHGGLPYWLREVQN 141 (833)
Q Consensus 99 ~dl~~fl~~a~~~-gL~Vilr~GPyicaEw---~~GG~P~WL~~~p~ 141 (833)
..+..|++.++++ |..++|=.+++..... .....|.||.+++.
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~~ 149 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYGV 149 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEeccC
Confidence 4678999999998 9988887777543221 23456889987653
No 211
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=20.80 E-value=98 Score=34.57 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCccCCcCCeeeecCchhHHHHHHHHHHcCCE--EE-eec
Q 035496 61 MWPDLIQKAKRGGLNVIQTYVFWNIHEPVQGQYNFQGQYDLVKFIKMIGEHGMY--AS-LRL 119 (833)
Q Consensus 61 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~g~~dl~~fl~~a~~~gL~--Vi-lr~ 119 (833)
.|++.+.+++..|+ +|++.-+=-.+|..|+.| +|+...+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 677888888999999998 4899999999999996 44 776
No 212
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=20.75 E-value=4.6e+02 Score=24.61 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=50.1
Q ss_pred CCceEEEEECCeeeeeeeeccCCCCCCCceeeeecCcCcccCCccEEEEEeeeccCCCceEEEEee-eccccccccccCC
Q 035496 646 RMGKGMIWINGQSIGRYWISYLSPLGQPTQSEYHIPRSYLKPTGNLMVILEEEEEARPEEIKFVVV-DRDTICSYISDIH 724 (833)
Q Consensus 646 g~gKG~vwVNG~nLGRYW~~~~~~~~GPQqtlYhVP~~~Lk~G~N~IvVfeEe~~~~p~~I~~~~~-~~~~~~~~~~~~~ 724 (833)
+-.+-+|++||.-+.||=.+. ....+++- |+.+ .|.|+|.|= ...+++.+. =-+++|.+-.
T Consensus 25 ~~~~~~I~~~g~~~~~i~L~~----~~~~~~i~-i~~~---~g~~~i~i~-------~g~vrv~~s~CpdkiCv~~G--- 86 (113)
T PF07009_consen 25 GGKYAVIYVDGKEVKRIPLDK----VNEDKTIE-IDGD---GGYNTIEIK-------DGKVRVIESDCPDKICVKTG--- 86 (113)
T ss_dssp SEEEEEEEETTEEEEEEETTS-----BSEEEEE-EETT---TCEEEEEEE-------TTEEEEEEESTSS-HHHHS----
T ss_pred CCeEEEEEECCEEEEEEECCC----CCCCEEEE-EecC---CcEEEEEEE-------CCEEEEEECCCCCcchhhCC---
Confidence 345678999999999996431 12344554 7553 356655542 356888875 4557887654
Q ss_pred CCCcccccccCCccccccccCCCceEEeCCCCCeEEEEE
Q 035496 725 PPPVQSWGSKNNVSEYTANNRKASAVLTCPDFKVITNVQ 763 (833)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~ 763 (833)
|-++.++ .+-|-+++.++.|.
T Consensus 87 ------~I~~~G~------------~IVCLPn~lvI~I~ 107 (113)
T PF07009_consen 87 ------WISRPGQ------------SIVCLPNRLVIEIE 107 (113)
T ss_dssp ------SB-STT-------------EEEETTTTEEEEEE
T ss_pred ------CcCCCCC------------EEEEcCCEEEEEEE
Confidence 3333333 68999999887665
No 213
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.64 E-value=1.2e+02 Score=32.45 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=57.8
Q ss_pred EEeEEEEEEeeCCC-CCcccHHHHHHHHHHcCCCEEEEeeeCCccCC-----------cCCeeeecCchhHHHHHHHHHH
Q 035496 43 KREILFSGSIHYTR-STPDMWPDLIQKAKRGGLNVIQTYVFWNIHEP-----------VQGQYNFQGQYDLVKFIKMIGE 110 (833)
Q Consensus 43 ~~~~~~sG~~Hy~r-~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----------~~G~~dF~g~~dl~~fl~~a~~ 110 (833)
+-+.+..|+-+..| |+.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|..++.+.+.
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~ 198 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLAR 198 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHh
Confidence 33444455555555 699999999999998888766443 22221 2456788888899999999999
Q ss_pred cCCEEEeecCccccc
Q 035496 111 HGMYASLRLGPFIQA 125 (833)
Q Consensus 111 ~gL~Vilr~GPyica 125 (833)
..+.|-...||.--|
T Consensus 199 ~~l~I~~Dsg~~HlA 213 (279)
T cd03789 199 ADLVVTNDSGPMHLA 213 (279)
T ss_pred CCEEEeeCCHHHHHH
Confidence 999998888875443
No 214
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.56 E-value=1.7e+02 Score=34.38 Aligned_cols=74 Identities=14% Similarity=0.299 Sum_probs=53.2
Q ss_pred EeCCeEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHcCCCEEEEeee----CCccC---------------------
Q 035496 33 YDGRSLIINGKREILFSGSIHYTRSTPDMWPDLIQKAKRGGLNVIQTYVF----WNIHE--------------------- 87 (833)
Q Consensus 33 ~d~~~~~i~G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE--------------------- 87 (833)
+.-|+|+||=.| |++ +.+.-++.|+.|-...+|+...++- |-+--
T Consensus 5 f~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~ 74 (445)
T cd06569 5 FEYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETT 74 (445)
T ss_pred CcccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccc
Confidence 344667776555 554 7888999999999999999999874 53211
Q ss_pred --------------CcCCeeeecCchhHHHHHHHHHHcCCEEEeec
Q 035496 88 --------------PVQGQYNFQGQYDLVKFIKMIGEHGMYASLRL 119 (833)
Q Consensus 88 --------------p~~G~~dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (833)
+..|.|. ..|+..+++.|++.|+.||--+
T Consensus 75 ~~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 75 CLLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred ccccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 0112232 3499999999999999999654
No 215
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.16 E-value=85 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCEEEeecCccccccc
Q 035496 99 YDLVKFIKMIGEHGMYASLRLGPFIQAEW 127 (833)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~GPyicaEw 127 (833)
.||..||+.|++.|+.|++=.-| +++.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 49999999999999998866644 44444
No 216
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.09 E-value=82 Score=35.44 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCcc------CCcCCeeeecCchhHHHHHHHHHHcCCEE
Q 035496 63 PDLIQKAKRGGLNVIQTYVFWNIH------EPVQGQYNFQGQYDLVKFIKMIGEHGMYA 115 (833)
Q Consensus 63 ~~~l~k~ka~G~N~V~~yv~Wn~h------Ep~~G~~dF~g~~dl~~fl~~a~~~gL~V 115 (833)
++.|++||++|++.+-. .-.... .-.|+...+. +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998740 001111 1123333333 5578999999999975
Done!