BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035497
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 42/144 (29%)
Query: 24 VKVIKEAISEALVYYYPFAGRIKQGPNRKVMVDCNGEGILF------------------- 64
KV+K+A+S ALV +YP AGR+K+ + ++ ++CNGEG+LF
Sbjct: 55 AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTL 114
Query: 65 ----------------------LKVTRLMCGGFTLAIHFNHTMCDELGLVQFVKTIQEMA 102
L+VT CGG +L + H D + F+ + +MA
Sbjct: 115 ELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 103 RGSNTPSLFPVSQRERLCARNPPQ 126
RG + +L P R L AR+PPQ
Sbjct: 175 RGLDV-TLPPFIDRTLLRARDPPQ 197
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 42/143 (29%)
Query: 25 KVIKEAISEALVYYYPFAGRIKQGPNRKVMVDCNGEGILF-------------------- 64
KV+K+A+S ALV +YP AGR+K+ + ++ ++CNGEG+LF
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLE 118
Query: 65 ---------------------LKVTRLMCGGFTLAIHFNHTMCDELGLVQFVKTIQEMAR 103
L+VT CGG +L + H D + F+ + +MAR
Sbjct: 119 LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 104 GSNTPSLFPVSQRERLCARNPPQ 126
G + +L P R L AR+PPQ
Sbjct: 179 GLDV-TLPPFIDRTLLRARDPPQ 200
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 42/143 (29%)
Query: 25 KVIKEAISEALVYYYPFAGRIKQGPNRKVMVDCNGEGILF-------------------- 64
KV+K+A+S ALV +YP AGR+K+ + ++ ++CNGEG+LF
Sbjct: 59 KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLE 118
Query: 65 ---------------------LKVTRLMCGGFTLAIHFNHTMCDELGLVQFVKTIQEMAR 103
L+VT GG +L + H D + F+ + +MAR
Sbjct: 119 LRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query: 104 GSNTPSLFPVSQRERLCARNPPQ 126
G + +L P R L AR+PPQ
Sbjct: 179 GLDV-TLPPFIDRTLLRARDPPQ 200
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 52/131 (39%)
Query: 22 DPVKV---IKEAISEALVYYYPFAGRIKQGPNRKVMVDCNGEGILF-------------- 64
DP + +K+++S+ L ++YP AGRI N VDCN G+ F
Sbjct: 55 DPAQTSQHLKQSLSKVLTHFYPLAGRI----NVNSSVDCNDSGVPFVEARVQAQLSQAIQ 110
Query: 65 -------------------------------LKVTRLMCGGFTLAIHFNHTMCDELGLVQ 93
+K++ CGG + ++ +H + D L L
Sbjct: 111 NVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLAT 170
Query: 94 FVKTIQEMARG 104
F+ RG
Sbjct: 171 FLNAWTATCRG 181
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 53 VMVDCNGEGILFLKVTRLMCG-GFTLAIHFNHTMCDELGLVQFVKTIQEMARGSN-TPSL 110
M+ +G F K L+ T A+HF H+ D + +++F E+ R S TP++
Sbjct: 336 TMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHSWGDGVAVLRF---FNEVFRDSTQTPAI 392
Query: 111 FPVSQ 115
P SQ
Sbjct: 393 TPQSQ 397
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group P43212
Length = 653
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 76 TLAIHFNHTMCDELGLVQFVKTIQEMARGS-NTPSLFPVSQ 115
T A+HF H+ D + +++F E+ R S TP++ P SQ
Sbjct: 360 TAAVHFEHSWGDGVAVLRF---FNEVFRDSTQTPAITPQSQ 397
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 76 TLAIHFNHTMCDELGLVQFVKTIQEMARGS-NTPSLFPVSQ 115
T A+HF H+ D + +++F E+ R S TP++ P SQ
Sbjct: 335 TAAVHFEHSWGDGVAVLRF---FNEVFRDSTQTPAITPQSQ 372
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 26 VIKEAISEALVYYYPFAGRIKQGPNRKVMVDCNGEGILF 64
++K E + PF G + NR ++ D G G+LF
Sbjct: 339 LLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLF 377
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 TLAIHFNHTMCDELGLVQFVKTIQEMARGSNTPSLFPV 113
++A+ T C GL K +Q + R NTP LFP+
Sbjct: 337 SIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPL 374
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 TLAIHFNHTMCDELGLVQFVKTIQEMARGSNTPSLFPV 113
++A+ T C GL K +Q + R NTP LFP+
Sbjct: 337 SIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPL 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,281,762
Number of Sequences: 62578
Number of extensions: 113892
Number of successful extensions: 306
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 16
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)