Your job contains 1 sequence.
>035500
MAMDMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYP
LIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDL
CQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC
ETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQ
IVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLM
DANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEH
LPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNIHRTQHFFSRSLSAAKLGSSAWPL
LHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG
GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSV
HVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT
MSRCGI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035500
(606 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116179 - symbol:AT4G34280 "AT4G34280" species... 1136 1.6e-117 2
UNIPROTKB|Q92466 - symbol:DDB2 "DNA damage-binding protei... 104 0.00028 2
>TAIR|locus:2116179 [details] [associations]
symbol:AT4G34280 "AT4G34280" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 InterPro:IPR003603 SMART:SM00446
GO:GO:0080008 EMBL:BT005961 EMBL:AK117309 IPI:IPI00539348
RefSeq:NP_195154.2 UniGene:At.31517 ProteinModelPortal:Q8GYY7
SMR:Q8GYY7 PRIDE:Q8GYY7 EnsemblPlants:AT4G34280.1 GeneID:829578
KEGG:ath:AT4G34280 TAIR:At4g34280 eggNOG:NOG273125
HOGENOM:HOG000090341 InParanoid:Q8GYY7 OMA:HQEHINV PhylomeDB:Q8GYY7
ProtClustDB:CLSN2680256 Genevestigator:Q8GYY7 Uniprot:Q8GYY7
Length = 783
Score = 1136 (405.0 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 258/608 (42%), Positives = 375/608 (61%)
Query: 4 DMSTLEARYLDSCRRRETQPNSSVLSWFSEAKIQNPNNEKCSILVYLDQLKNADIYPLID 63
+++TLE +Y++ C+ PN+++LS F EA+++ N++C + +Y+D++K D PL++
Sbjct: 6 EIATLEEKYIELCKMHGILPNTAILSAFFEAEVKKSRNQRCIMNLYVDRVKYDDYLPLLE 65
Query: 64 VFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQV 123
+ E+++ +++ +D+ + C L++ Y + L+ +++QKLRVV L + +N D+
Sbjct: 66 LCNEINTSEVQGIDLFVRSACSLEDHYALPLIRSVNQKLRVVHLHDSFGKNF-WQDVFFQ 124
Query: 124 GSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETR 183
G SC VL +R+ +I KLN+VG F L+TL LD + + EDCFSCMP L LSMC+T
Sbjct: 125 GLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDK-NRIVGFGEDCFSCMPKLTYLSMCDTL 183
Query: 184 IVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVC 243
+ +LWT+ AA+ KLP L ELRFQ+ + C D+ P + + + +++ +
Sbjct: 184 VSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNSESSPSSSTKDDINTFIESDPPVEA 243
Query: 244 KKFRDADEVE--LP--KYLRTMNLM-------ELSS--CLSPNLNGHAEMLDEVNDSNE- 289
+ A++++ LP + L +M+ +L S +S LNG M ++V
Sbjct: 244 DMWDVAEQMDPSLPVEETLHSMDFSYKIPEQDDLDSHVSVSAGLNGEVLMREKVRRGKMP 303
Query: 290 -FPGGAHKQDLMD---ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRL 345
P D NV LK YIS SPIC EKHYR YMI SLP+L+VLDNL I +
Sbjct: 304 YQPKDVSPVDTFTRQFGNVGLK-YISSKASPICSEKHYRMYMINSLPKLQVLDNLAIRKS 362
Query: 346 DREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNYQNSSKPKQPNIHRTQHFFS 405
DR+ A ++ FE LPYKRK KESVV +L+ RE + SSK K +Q+ +
Sbjct: 363 DRDKAIETYSANFEDLPYKRK-KESVVRVLENRE-------KRSSKGK------SQNSYK 408
Query: 406 RSLSAAKLGSSAWPLLHPVSSFS-HIYKEG-NKRVRPRQFEYNPSNPSLMAFGTLDGEVI 463
RSL AAK+GS A PLLH + S I +E N R+ PRQFEY+P +PSLM FGTLDGEV+
Sbjct: 409 RSLCAAKMGSPASPLLHSLPFLSSRIQQEDDNSRLCPRQFEYHPLDPSLMVFGTLDGEVV 468
Query: 464 VINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA-DA 522
V+NHE+G + YIPS G +++LGLCWLK YPS ++AGS +G ++L+D+ V +
Sbjct: 469 VLNHESGKIFRYIPSNGSQSTILGLCWLKIYPSMVIAGSANGSLKLYDIQKASSTVTTSS 528
Query: 523 RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582
S T+ +F+QLTSVH NSTD FLASGYSK+VALYDI LQ+F +MH+E INV
Sbjct: 529 HSTSGSVTFDEFDQLTSVHANSTDQLFLASGYSKDVALYDIGRGTRLQVFANMHQEHINV 588
Query: 583 AKFSHHSP 590
KFS+HSP
Sbjct: 589 VKFSNHSP 596
Score = 42 (19.8 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 534 FEQLTSVHVN----STDDQFL--ASGYSKNVALYDINTEKPLQLFT 573
F + H+N S FL S + K+V L+D+ E +T
Sbjct: 578 FANMHQEHINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSRPCYT 623
>UNIPROTKB|Q92466 [details] [associations]
symbol:DDB2 "DNA damage-binding protein 2" species:9606
"Homo sapiens" [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA]
[GO:0009411 "response to UV" evidence=IDA] [GO:0043234 "protein
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000209 "protein polyubiquitination" evidence=IDA] [GO:0051865
"protein autoubiquitination" evidence=IDA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003684 "damaged DNA binding"
evidence=TAS] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
UniPathway:UPA00143 GO:GO:0009411 GO:GO:0043234 GO:GO:0005654
EMBL:CH471064 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0003684 eggNOG:COG2319 GO:GO:0000209
GO:GO:0051865 GO:GO:0000718 PDB:3EI4 PDB:3I7L PDB:4E54 PDB:4E5Z
PDBsum:3EI4 PDBsum:3I7L PDBsum:4E54 PDBsum:4E5Z KO:K10140 CTD:1643
HOGENOM:HOG000231440 HOVERGEN:HBG000713 OMA:NSAYFNP
OrthoDB:EOG40K7ZV GO:GO:0006290 EMBL:U18300 EMBL:AB107037
EMBL:AB107038 EMBL:AB107039 EMBL:AB107040 EMBL:BT007139
EMBL:AY220533 EMBL:AK313262 EMBL:BC000093 IPI:IPI00021518
IPI:IPI00446284 IPI:IPI00549348 IPI:IPI00607674 IPI:IPI00607727
PIR:I38909 RefSeq:NP_000098.1 UniGene:Hs.700338
ProteinModelPortal:Q92466 SMR:Q92466 DIP:DIP-36670N IntAct:Q92466
STRING:Q92466 PhosphoSite:Q92466 DMDM:12230033 PaxDb:Q92466
PRIDE:Q92466 DNASU:1643 Ensembl:ENST00000256996
Ensembl:ENST00000378600 Ensembl:ENST00000378601
Ensembl:ENST00000378603 GeneID:1643 KEGG:hsa:1643 UCSC:uc001neb.2
UCSC:uc001nee.2 UCSC:uc009yli.1 GeneCards:GC11P047193
HGNC:HGNC:2718 HPA:CAB025912 MIM:278740 MIM:600811
neXtProt:NX_Q92466 Orphanet:276261 PharmGKB:PA27188
InParanoid:Q92466 PhylomeDB:Q92466 ChiTaRS:DDB2
EvolutionaryTrace:Q92466 GenomeRNAi:1643 NextBio:6758 Bgee:Q92466
CleanEx:HS_DDB2 Genevestigator:Q92466 GermOnline:ENSG00000134574
Uniprot:Q92466
Length = 427
Score = 104 (41.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG ++WP LH + S+ + K R ++P++PS +A G
Sbjct: 71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511
+ G++++ N + +I IG S+ GL + ++ A S G RL D
Sbjct: 131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 185
Score = 63 (27.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 535 EQLTSVHVNSTDDQFLASG-YSKNVALYDINTE--KPLQLFTDMHREPINVAKFS 586
+++T V +N D FLA+ + V ++D+ K L++ HR P+N A FS
Sbjct: 243 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 297
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 606 598 0.00085 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 622 (66 KB)
Total size of DFA: 348 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.54u 0.14s 51.68t Elapsed: 00:00:02
Total cpu time: 51.54u 0.14s 51.68t Elapsed: 00:00:02
Start: Thu May 9 18:13:42 2013 End: Thu May 9 18:13:44 2013