BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035500
(606 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2 OS=Homo sapiens GN=DDB2 PE=1 SV=1
Length = 427
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 46/227 (20%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG ++WP LH + S+ + K R ++P++PS +A G
Sbjct: 71 RTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVG 130
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516
+ G++++ N + +I IG S+ GL + ++ A S G RL D
Sbjct: 131 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 190
Query: 517 PKV-------------ADARGNSSVATYYD---------------------FEQLTSVHV 542
+V D +S + D +++T V +
Sbjct: 191 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVAL 250
Query: 543 NSTDDQFLASG-YSKNVALYDINT--EKPLQLFTDMHREPINVAKFS 586
N D FLA+ + V ++D+ K L++ HR P+N A FS
Sbjct: 251 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 297
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 115 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 170
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R ++V T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 171 GSDDGTVKLWDI----------RKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 220
Query: 561 YDINTEK 567
+D+ K
Sbjct: 221 WDLRQNK 227
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 115 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 170
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R +++ T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 171 GSDDGTVKLWDI----------RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 220
Query: 561 YDINTEK 567
+D+ K
Sbjct: 221 WDLRQNK 227
>sp|Q0VBY8|DDB2_BOVIN DNA damage-binding protein 2 OS=Bos taurus GN=DDB2 PE=2 SV=1
Length = 426
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R+L KLG++AWP L+ ++S+ K R ++P++PS +A G
Sbjct: 70 RALHQHKLGTAAWPSLQQGLQQSFLNSLASYRIFQKAAPFDRRATSLAWHPTHPSTLAVG 129
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512
+ G++++ N + +I IG S+ G+ + ++ S G RL D
Sbjct: 130 SKGGDILLWNFGIKDKPTFIKGIGAGGSITGMKFNPLNTNQFFTSSMEGTTRLQDF 185
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 114 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 169
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R +++ T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 170 GSDDGTVKLWDI----------RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 219
Query: 561 YDINTEK 567
+D+ K
Sbjct: 220 WDLRQNK 226
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW-LKKYPSKLVA 500
+ YN ++ S++ + D V V + E G + + G S + C+ ++ P +
Sbjct: 114 ELHYN-TDGSMLFSASTDKTVAVWDSETGE---RVKRLKGHTSFVNSCYPARRGPQLVCT 169
Query: 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560
GSD G V+L+D+ R +++ T+ + Q+ +V N T DQ ++ G ++ +
Sbjct: 170 GSDDGTVKLWDI----------RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKV 219
Query: 561 YDINTEK 567
+D+ K
Sbjct: 220 WDLRQNK 226
>sp|Q99J79|DDB2_MOUSE DNA damage-binding protein 2 OS=Mus musculus GN=Ddb2 PE=1 SV=1
Length = 432
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 406 RSLSAAKLGSSAWP---------LLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFG 456
R L KLG + W LH ++S+ K R ++P++PS +A G
Sbjct: 71 RDLYQHKLGKATWSSLQQGLQKSFLHSLASYQVFRKAAPFDRRTTSLAWHPTHPSTLAVG 130
Query: 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512
+ G++++ N + ++ IG S+ GL + ++ A S G RL D
Sbjct: 131 SKGGDIMIWNFGIKDKPIFLKGIGAGGSITGLKFNHLNTNQFFASSMEGTTRLQDF 186
>sp|Q4WEI5|HAT2_ASPFU Histone acetyltransferase type B subunit 2 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=hat2 PE=3 SV=1
Length = 436
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE------NGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498
Y P NP+++A DG V+V + G V + IG T GL W +L
Sbjct: 146 YQPQNPNIIATMCTDGRVMVWDRSKHPSLPTGQVNPQMELIGHTKEGFGLSWSPHTAGQL 205
Query: 499 VAGSDSGCVRLFDL 512
GS+ VR++DL
Sbjct: 206 ATGSEDKTVRIWDL 219
>sp|Q2UA71|HAT2_ASPOR Histone acetyltransferase type B subunit 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=hat2 PE=3 SV=1
Length = 436
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE------NGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498
Y P NP+++A DG V++ + G V + +G T GL W L
Sbjct: 146 YQPQNPNVIATMCTDGRVMIWDRSKHPSLPTGTVNPQMELLGHTKEGFGLSWSPHTAGHL 205
Query: 499 VAGSDSGCVRLFDL 512
V GS+ VRL+DL
Sbjct: 206 VTGSEDKTVRLWDL 219
>sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRB1 PE=1 SV=1
Length = 511
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS 502
+++ + ++ A DG + + + + I V + W K L +G
Sbjct: 327 IQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWSDKIGYLLASGD 386
Query: 503 DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASGYSKN-VA 559
D+G ++DL P ADA YDF + +TS+ N D+ +A G N V
Sbjct: 387 DNGTWGVWDLRQFTPSNADA---VQPVAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVT 443
Query: 560 LYDINTE 566
L+D++ E
Sbjct: 444 LWDLSVE 450
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 448 SNPSLMAFGTLDGEVIVINHENGNVACY-------IPSIGGTNSVLGLCWLKKYPSKLVA 500
SN + +A G + G V+V E+ V + I S+ G S + +VA
Sbjct: 17 SNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSEELVVA 76
Query: 501 GSDSGCVRLFDLNHIPPKVADA-RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KNV 558
GS SG ++++DL P K+ G+ + DF +F+ASG + NV
Sbjct: 77 GSQSGTMKIYDLE--PAKIVRTLTGHRNSIRCMDFHPF---------GEFVASGSTDTNV 125
Query: 559 ALYDINTEKPLQLFTDMHREPINVAKFS 586
L+D+ + + + H + +N+ KFS
Sbjct: 126 KLWDVRRKGCIYTYKG-HSDQVNMIKFS 152
>sp|B9WN49|RTC1_CANDC Restriction of telomere capping protein 1 OS=Candida dubliniensis
(strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 /
NRRL Y-17841) GN=RTC1 PE=3 SV=1
Length = 1098
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTS 539
TN ++ + +K Y + AG +G V ++ +V+ + V Y D + + S
Sbjct: 131 ATNKLINVNTIKTYADTIAAGLSNGVVLIY-------RVSPNGQSKVVGKYSDHSRTINS 183
Query: 540 VHVNSTDDQFLASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSP----LC 592
+ +++Q L+ + L+D+ +T+ + + ++H +PI ++S HS +C
Sbjct: 184 LDFIDSENQLLSGSQDGTIKLWDLRSSSTKPVMTIQANLHSDPIRACQYSRHSAVRNKIC 243
Query: 593 LLLLH 597
+L +H
Sbjct: 244 VLSVH 248
>sp|Q4I7L0|HAT2_GIBZE Histone acetyltransferase type B subunit 2 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=HAT2 PE=3 SV=1
Length = 423
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINH--------ENGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A +DG++++ + G V I +G GL W
Sbjct: 131 YQPQNPDILATLCVDGKILIFDRTKHPLDPTSTGKVNAQIELVGHEAEGFGLNWNPHEEG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTS-VHVNSTDDQFLAS-GY 554
L +GS+ +RL+DL + AD+R + TY Q+ + V + F+ S
Sbjct: 191 CLASGSEDTTMRLWDLKTLK---ADSRILNPSRTYRHHTQIVNDVQYHPISKNFIGSVSD 247
Query: 555 SKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
+ + + DI T K + H + IN F+ +S + +
Sbjct: 248 DQTLQIVDIRHSETNKAAVVAKRGHLDAINALAFNPNSEVLV 289
>sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP13 PE=1
SV=1
Length = 817
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 448 SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGL-------CWLKKYPSKLVA 500
S +L+A G DG +IV++ ENG + GGT S L WL L +
Sbjct: 112 STSTLLAVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWL------LAS 165
Query: 501 GSDSGCVRLFDL 512
G +G V+++DL
Sbjct: 166 GDTNGMVKVWDL 177
>sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium
discoideum GN=grwd1 PE=3 SV=1
Length = 482
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503
+++PS + A ++D V + + A + + T V + W + LV+G D
Sbjct: 303 QWSPSEEKVFASCSIDQTVRIWDIRKPKPAITVKA--HTADVNVISWSRNVEYLLVSGCD 360
Query: 504 SGCVRLFDLNHIPPKVADARGNSSVATY-YDFEQLTSVHVNSTDD-QFLASGYSKNVALY 561
G R++DL + NS V+ + Y +TS+ N ++ Q + S V ++
Sbjct: 361 DGSFRVWDLRAF-------KDNSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQVTIW 413
Query: 562 DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597
D + E+ + FT+ + P + ++ P L +H
Sbjct: 414 DFSLEEDTEEFTNANANPDDDFQY----PPQLFFIH 445
>sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gallus GN=DDB2 PE=2 SV=1
Length = 507
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS 502
E++P++PS +A G+ G++I+ ++E C+I G +S+ + + KL S
Sbjct: 130 LEWHPTHPSTVAVGSKGGDIILWDYEVLTKTCFIKGKGPGDSLGDIKFSPYEAVKLYVAS 189
Query: 503 DSGCVRLFDLNHIPPKVAD-----ARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKN 557
G + L DL +V N +V +Y SV V+++ + N
Sbjct: 190 GDGTLSLQDLEGRAVQVISRAPDCGHENHNVCCWY-----CSVDVSASCRAVVTGDNLGN 244
Query: 558 VALYDINTEKPLQLFTDMHREPINVAKFS 586
V L + E+ +L +H++ + +F+
Sbjct: 245 VVLLSTSGEEIWKL--KLHKKKVTHVEFN 271
>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1
PE=1 SV=2
Length = 255
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 302 ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
A++K Y+S +P+ +KHYR Y+I +PQ+ VLD + +R+ A+ +F
Sbjct: 110 ASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 162
>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis
GN=SNRPA1 PE=2 SV=1
Length = 255
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 302 ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
A++K Y+S +P+ +KHYR Y+I +PQ+ VLD + +R+ A+ +F
Sbjct: 110 ASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 162
>sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1
PE=1 SV=2
Length = 255
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 302 ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
A++K Y+S +P+ +KHYR Y+I +PQ+ VLD + +R+ A+ +F
Sbjct: 110 ASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 162
>sp|Q7S7N3|HAT2_NEUCR Histone acetyltransferase type B subunit 2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=hat-2 PE=3 SV=2
Length = 446
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE------NGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498
Y P NP ++A +DG V++ + +G + + IG GL W L
Sbjct: 148 YQPQNPDIIATLAVDGRVLIFDRTKHSITPSGTPSPQLELIGHKEEGFGLNWNPHEEGCL 207
Query: 499 VAGSDSGCVRLFDL 512
V GS+ V L+DL
Sbjct: 208 VTGSEDKTVLLWDL 221
>sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidioides immitis (strain RS)
GN=SEC31 PE=3 SV=1
Length = 1261
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYPSKLV 499
+ ++NP + +L+A G GE+ + + N + A + S + + L W KK P LV
Sbjct: 124 KALQFNPRHSNLLATGGGKGELFISDLNNVDQAFRLGSGAARVDDIECLDWNKKVPHILV 183
Query: 500 AGSDSGCVRLFDL 512
GS +G V ++D+
Sbjct: 184 TGSSAGFVTVWDV 196
>sp|O22467|MSI1_ARATH Histone-binding protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1
SV=1
Length = 424
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHENG------NVACYIPSI---GGTNSVLGLCWLKKYP 495
Y P NP ++A T++ EV V ++ + AC P + G ++ GL W K
Sbjct: 133 YMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACN-PDLKLRGHSSEGYGLSWSKFKQ 191
Query: 496 SKLVAGSDSGCVRLFDLNHIP 516
L++GSD + L+D+N P
Sbjct: 192 GHLLSGSDDAQICLWDINATP 212
>sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis
elegans GN=sap-1 PE=1 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 302 ANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
A K +Y++ +PI + +YR YMI LP + V+D + +RE AK +F
Sbjct: 110 AECKKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMF 162
>sp|Q9V4Q8|RU2A_DROME Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila
melanogaster GN=U2A PE=2 SV=1
Length = 265
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 315 SPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVF 354
+P+ + +YREYM PQL +LD I + DR+ A+ F
Sbjct: 123 NPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDRQAAQEFF 162
>sp|Q5S580|SEC31_AJECA Protein transport protein SEC31 OS=Ajellomyces capsulatus GN=SEC31
PE=1 SV=1
Length = 1273
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 441 RQFEYNPSNPSLMAFGTLDGEVIVINHEN-------GNVACYIPSIGGTNSVLGLCWLKK 493
+ ++NP + +L+A G GE+ + + N GNV + + + L W KK
Sbjct: 124 KTLQFNPRHSNLLATGGSKGELFISDLNNIDHPFRLGNVNARL------DDIECLDWNKK 177
Query: 494 YPSKLVAGSDSGCVRLFDL 512
P LV GS +G V ++D+
Sbjct: 178 VPHILVTGSSAGFVTVWDV 196
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 428 SHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLG 487
S +Y+E KR ++N +P L+A G+ D +V + + N S+ +
Sbjct: 508 SKVYQEHEKRCWS--VDFNLMDPKLLASGSDDAKVKLWSTNLDN------SVASIEAKAN 559
Query: 488 LCWLKKYPSK---LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS 544
+C +K PS L G CV +DL + + +G+ +Y F + S
Sbjct: 560 VCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSAS 619
Query: 545 TDDQF 549
TD Q
Sbjct: 620 TDSQL 624
>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1
Length = 440
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 36/188 (19%)
Query: 256 KYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKK-YISHHP 314
K L +NL + + NL G E L +++ + F G + + N+ LK+ Y+ +P
Sbjct: 66 KKLEYLNLALNNIEVIENLEG-CESLQKLDLTVNFVGRLSSVETLKHNLHLKELYLVGNP 124
Query: 315 SPICFE-KHYREYMIASLPQLEVLDNLPIGRLDREIA----KSVFARYFEHLPYKRKHKE 369
C E + YR+Y++A++PQL+ LD I R +R A +V R +
Sbjct: 125 ---CAEYQGYRQYVVATVPQLQSLDGKEISRAERIQALQELDAVRTRVLQQ--------- 172
Query: 370 SVVSLLQKREMGTSGNYQNSSKPKQPNIHRTQHFFSRSLSAAKLGSSAWPLLHPVSSFSH 429
L++RE Q S+ + P I ++SLS ++ G+ +P SS +H
Sbjct: 173 -ETKYLEEREK------QKSNANEHPEI-------NQSLSESQNGTQQYP---ESSSKTH 215
Query: 430 IYKEGNKR 437
E +R
Sbjct: 216 TEAEDEER 223
>sp|Q0CYG9|SEC31_ASPTN Protein transport protein sec31 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=sec31 PE=3 SV=1
Length = 1247
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVA 500
+ ++NP + +L+A G GE+ + + N + + + + L W KK LV
Sbjct: 124 KALQFNPKHSNLLATGGAKGELYISDLNNVANPYRLGTAARADDIECLDWNKKVAHILVT 183
Query: 501 GSDSGCVRLFDL 512
GS++G V ++D+
Sbjct: 184 GSNAGFVTVWDV 195
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 62/178 (34%), Gaps = 41/178 (23%)
Query: 448 SNPSLMAFGTLDGEVIVINHENGNVACY-------IPSIGGTNSVLGLCWLKKYPSKLVA 500
SN S + G G ++ E+ V + I S+ G S +G ++VA
Sbjct: 21 SNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVA 80
Query: 501 GSDSGCVRLFDLNHIP--------------------------------PKVADARGNSSV 528
GS SG +RL+DL K+ D R V
Sbjct: 81 GSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCV 140
Query: 529 ATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTDMHREPINVAKF 585
Y Q S D ++LAS V L+D+ K + FT H +NV +F
Sbjct: 141 FRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTS-HTSAVNVVQF 197
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 428 SHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLG 487
S +Y+E KR ++N +P L+A G+ D +V + + N S+ +
Sbjct: 506 SKVYQEHEKRCW--SVDFNLMDPKLLASGSDDAKVKLWSTNLDN------SVASIEAKAN 557
Query: 488 LCWLKKYPSK---LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS 544
+C +K PS L G CV +DL + + +G+ +Y F + S
Sbjct: 558 VCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSAS 617
Query: 545 TDDQF 549
TD Q
Sbjct: 618 TDSQL 622
>sp|Q9DAK8|LRC51_MOUSE Leucine-rich repeat-containing protein 51 OS=Mus musculus GN=Lrrc51
PE=2 SV=1
Length = 192
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 308 KYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKH 367
+ ++ H +PI EK YR+Y++ +LP++ D + R DR A+ V+ R P K +
Sbjct: 130 RSLTLHGNPIEEEKGYRQYVLCNLPRITTFDFSGVTRADRSTAE-VWKRMGIK-PKKVRA 187
Query: 368 KESVV 372
K+ V+
Sbjct: 188 KQDVL 192
>sp|Q3SWX8|RBBP7_BOVIN Histone-binding protein RBBP7 OS=Bos taurus GN=RBBP7 PE=2 SV=1
Length = 425
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE--------NGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A T +V+V ++ +G + G GL W
Sbjct: 131 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPP--KVADAR----GNSSVATYYDFEQL-TSVHVNSTDDQF 549
L++ SD V L+D+N P K+ DA+ G+S+V + L S+ + DDQ
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 550 LASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
L ++D T KP L D H +N F+ +S L
Sbjct: 251 L--------MIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFIL 288
>sp|Q71UF4|RBBP7_RAT Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2
SV=1
Length = 425
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE--------NGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A T +V+V ++ +G + G GL W
Sbjct: 131 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPP--KVADAR----GNSSVATYYDFEQL-TSVHVNSTDDQF 549
L++ SD V L+D+N P K+ DA+ G+S+V + L S+ + DDQ
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 550 LASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
L ++D T KP L D H +N F+ +S L
Sbjct: 251 L--------MIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFIL 288
>sp|Q4R304|RBBP7_MACFA Histone-binding protein RBBP7 OS=Macaca fascicularis GN=RBBP7 PE=2
SV=1
Length = 425
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE--------NGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A T +V+V ++ +G + G GL W
Sbjct: 131 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPP--KVADAR----GNSSVATYYDFEQL-TSVHVNSTDDQF 549
L++ SD V L+D+N P K+ DA+ G+S+V + L S+ + DDQ
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 550 LASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
L ++D T KP L D H +N F+ +S L
Sbjct: 251 L--------MIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFIL 288
>sp|Q16576|RBBP7_HUMAN Histone-binding protein RBBP7 OS=Homo sapiens GN=RBBP7 PE=1 SV=1
Length = 425
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE--------NGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A T +V+V ++ +G + G GL W
Sbjct: 131 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPP--KVADAR----GNSSVATYYDFEQL-TSVHVNSTDDQF 549
L++ SD V L+D+N P K+ DA+ G+S+V + L S+ + DDQ
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 550 LASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
L ++D T KP L D H +N F+ +S L
Sbjct: 251 L--------MIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFIL 288
>sp|Q60973|RBBP7_MOUSE Histone-binding protein RBBP7 OS=Mus musculus GN=Rbbp7 PE=1 SV=1
Length = 425
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHE--------NGNVACYIPSIGGTNSVLGLCWLKKYPS 496
Y P NP ++A T +V+V ++ +G + G GL W
Sbjct: 131 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 497 KLVAGSDSGCVRLFDLNHIPP--KVADAR----GNSSVATYYDFEQL-TSVHVNSTDDQF 549
L++ SD V L+D+N P K+ DA+ G+S+V + L S+ + DDQ
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 550 LASGYSKNVALYDI---NTEKPLQLFTDMHREPINVAKFSHHSPLCL 593
L ++D T KP L D H +N F+ +S L
Sbjct: 251 L--------MIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFIL 288
>sp|Q501X2|CEP72_DANRE Centrosomal protein of 72 kDa OS=Danio rerio GN=cep72 PE=2 SV=2
Length = 532
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 295 HK-QDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIA 350
HK Q+L + +++L + HP HYR Y++ ++P+L LD+ P+ +R+ A
Sbjct: 95 HKLQNLKELDLRLNPVVKKHP-------HYRLYLVHAIPKLRRLDDCPVRDRERKAA 144
>sp|Q8CDN9|LRRC9_MOUSE Leucine-rich repeat-containing protein 9 OS=Mus musculus GN=Lrrc9
PE=2 SV=2
Length = 1456
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 308 KYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKR 365
+ ++ + +PIC + +R +I LP L++LD +PI DR AK+ F +F L K+
Sbjct: 1312 RELTVYGNPICRKMVHRHVLIFRLPNLQMLDGIPINSDDR--AKAEF--HFSELQAKK 1365
>sp|Q5RCA2|MIO_PONAB WD repeat-containing protein mio OS=Pongo abelii GN=MIOS PE=2 SV=1
Length = 875
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT 538
+G ++ L LCWL + L+AG + +FDL N+S + + + +
Sbjct: 181 LGQNDACLSLCWLPRDQKLLLAGMHRN-LAIFDLR-----------NTSQKMFVNTKAVQ 228
Query: 539 SVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVA 583
V V+ +AS Y VA++D+ EKP+ T+ + VA
Sbjct: 229 GVTVDPYFHDRVASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVA 274
>sp|Q9NXC5|MIO_HUMAN WD repeat-containing protein mio OS=Homo sapiens GN=MIOS PE=1 SV=2
Length = 875
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT 538
+G ++ L LCWL + L+AG + +FDL N+S + + + +
Sbjct: 181 LGQNDACLSLCWLPRDQKLLLAGMHRN-LAIFDLR-----------NTSQKMFVNTKAVQ 228
Query: 539 SVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVA 583
V V+ +AS Y VA++D+ EKP+ T+ + VA
Sbjct: 229 GVTVDPYFHDRVASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVA 274
>sp|Q9XF57|PEX7_ARATH Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana GN=PEX7
PE=1 SV=2
Length = 317
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVH 541
++V +CW + + S L+A G V+++D +PP R A ++ SV
Sbjct: 60 ADAVYDVCWSESHDSVLIAAIGDGSVKIYD-TALPPPSNPIRSFQEHA-----REVQSVD 113
Query: 542 VNST-DDQFLASGYSKNVALYDINTEKPLQLFTD 574
N T D FL S + V L+ ++ ++ F +
Sbjct: 114 YNPTRRDSFLTSSWDDTVKLWAMDRPASVRTFKE 147
>sp|O22466|MSI1_SOLLC WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum
GN=MSI1 PE=2 SV=1
Length = 424
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 445 YNPSNPSLMAFGTLDGEVIVINHENG------NVACYIPSI---GGTNSVLGLCWLKKYP 495
Y P NP ++A T+ EV V ++ + AC P + G + GL W +
Sbjct: 133 YMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACN-PDLRLRGHSTEGYGLSWSQFKQ 191
Query: 496 SKLVAGSDSGCVRLFDLNHIPPKVA 520
L++GSD + L+D+N P A
Sbjct: 192 GHLLSGSDDSHICLWDINATPKNKA 216
>sp|Q552R1|DCAF7_DICDI DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium
discoideum GN=wdr68 PE=3 SV=2
Length = 325
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS 502
F++N ++PSL+A ++D + N E G + I V + + + G+
Sbjct: 123 FDWNETDPSLLATSSIDTTCTIWNIETGQAKTQL--IAHDKEVFDIAFARGTDLFASVGA 180
Query: 503 DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY--SKNVAL 560
D G +R+FDL ++ ++ + F L + N D +LA+ S V +
Sbjct: 181 D-GSLRMFDLRNL-------EHSTIIYETPSFVPLLRLCWNKQDPNYLATIQQDSPKVII 232
Query: 561 YDINTEKPLQLFTDMHREPINVAKFSHHS 589
DI H+ +N ++ HS
Sbjct: 233 LDIRVPSVPAAELVFHKSAVNGISWAPHS 261
>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1
Length = 466
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 315 SPICFEKHYREYMIASLPQLEVLDNLPIGRLDR 347
+P F HYRE+++A+LPQL+ LD I +R
Sbjct: 123 NPCAFFDHYREFVVATLPQLKWLDGKGIEPSER 155
>sp|P58681|TLR7_MOUSE Toll-like receptor 7 OS=Mus musculus GN=Tlr7 PE=1 SV=1
Length = 1050
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
Query: 327 MIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQKREMGTSGNY 386
++ LP+LEVLD +G +IA ++FE+L + + RE+G N
Sbjct: 392 VLHKLPRLEVLD---LGTNFIKIADLNIFKHFENLKLIDLSVNKISPSEESREVGFCPNA 448
Query: 387 QNSSKPKQPNIHRTQHFFSRSLSA--AKLGSSAWPLLHPVSSFSHIYKEGNKRVRPRQFE 444
Q S P + H+F A + + P P+++ HIY + R F
Sbjct: 449 QTSVDRHGPQVLEALHYFRYDEYARSCRFKNKEPPSFLPLNADCHIYGQTLDLSRNNIFF 508
Query: 445 YNPSNPSLMAF 455
PS+ ++F
Sbjct: 509 IKPSDFQHLSF 519
>sp|Q802U2|MIO_DANRE WD repeat-containing protein mio OS=Danio rerio GN=mios PE=2 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT 538
+G ++ L LCWL + KL+ + +FDL N+S T+ + + +
Sbjct: 181 LGQNDACLSLCWLPRDHQKLLLAGMHRNLAIFDLR-----------NTSQKTFVNTKAIQ 229
Query: 539 SVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597
V V+ +AS + VA++D+ EKP +FT ++ +P + K + LL
Sbjct: 230 GVTVDPHFQDRVASYFEGQVAIWDLRKFEKP--VFT-LNEQPKPLTKVAWCPTRMGLLAT 286
Query: 598 LT 599
LT
Sbjct: 287 LT 288
>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1
Length = 794
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL 491
KE KRV +Y+ ++P+L+A G+ DG V + + G SIG + +C +
Sbjct: 573 KEHEKRVW--SIDYSSADPTLLASGSDDGSVKLWSINQG------VSIGTIKTKANICCV 624
Query: 492 KKYPSK----LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD 547
++PS+ L GS V +DL + + G+ +Y F +++ +STD+
Sbjct: 625 -QFPSETGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDN 683
Query: 548 QFLASGYSKNVALYDINTEKPLQLF 572
+ ++++ IN E PL F
Sbjct: 684 TLKL--WDLSMSISGIN-ETPLHSF 705
>sp|Q4P2B6|SEC31_USTMA Protein transport protein SEC31 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=SEC31 PE=3 SV=1
Length = 1416
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT--NSVLGLCWLKKYPSKL 498
R ++NP P+L++ G + GE+ + + N Y P + + + L W + P L
Sbjct: 131 RGLDFNPLQPNLLSSGAVAGEIFIWDL-NSPAKPYSPGARSSKLDEITSLAWNCQVPHVL 189
Query: 499 VAGSDSGCVRLFDLNHIPPKVADARGNSS-VATYYDFEQLTSV-HVNSTDDQFLASGYSK 556
S SG ++DL RG VA Y T+V + LA+G +
Sbjct: 190 ATSSSSGYTVVWDL----------RGKREVVALQYGGGAGTAVGSLGINAGSALAAGGRR 239
Query: 557 NVALYDINTEKPLQLFT 573
++ + + P +L T
Sbjct: 240 GMSAVAWHPDTPTRLVT 256
>sp|Q8VE19|MIO_MOUSE WD repeat-containing protein mio OS=Mus musculus GN=Mios PE=2 SV=2
Length = 875
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 479 IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT 538
+G ++ L LCWL + L+AG + +FDL N+S + + + +
Sbjct: 181 LGQNDASLSLCWLPRDQKLLLAGMHRN-LAIFDLR-----------NTSQKMFVNTKAVQ 228
Query: 539 SVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVA 583
V V+ +AS Y VA++D+ EKP+ T+ + VA
Sbjct: 229 GVTVDPYFHDRVASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVA 274
>sp|Q5ACL4|RTC1_CANAL Restriction of telomere capping protein 1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLT--SV 540
N ++ + +K + + G +G V ++ ++ G S V Y T S+
Sbjct: 133 NKLINVNTIKTFADTIATGLSNGVVSIYKIS--------PNGQSKVTGKYSDHNRTINSL 184
Query: 541 HVNSTDDQFLASGYSKNVALYDI--NTEKP-LQLFTDMHREPINVAKFSHHSP----LCL 593
+++Q L+ + L+D+ ++ KP + + ++H +PI ++S HS +C+
Sbjct: 185 DFIESENQLLSGSQDGTIKLWDLRSSSTKPVMTVQANLHSDPIRACQYSPHSAVRNKICV 244
Query: 594 LLLH 597
L +H
Sbjct: 245 LSVH 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,720,104
Number of Sequences: 539616
Number of extensions: 9444901
Number of successful extensions: 20364
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 20275
Number of HSP's gapped (non-prelim): 126
length of query: 606
length of database: 191,569,459
effective HSP length: 123
effective length of query: 483
effective length of database: 125,196,691
effective search space: 60470001753
effective search space used: 60470001753
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)