Query 035500
Match_columns 606
No_of_seqs 375 out of 2228
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 99.9 2.8E-23 6.1E-28 215.9 11.4 151 439-604 263-414 (459)
2 KOG0268 Sof1-like rRNA process 99.9 5.5E-23 1.2E-27 210.4 10.5 189 387-603 23-213 (433)
3 KOG0271 Notchless-like WD40 re 99.9 4.2E-22 9.2E-27 204.9 16.2 149 440-604 118-272 (480)
4 KOG0272 U4/U6 small nuclear ri 99.9 2.2E-22 4.7E-27 209.3 12.5 149 440-604 306-456 (459)
5 KOG1644 U2-associated snRNP A' 99.9 1.4E-23 3E-28 202.0 2.9 155 89-354 7-162 (233)
6 KOG0263 Transcription initiati 99.9 3E-21 6.6E-26 213.4 15.8 149 440-604 454-603 (707)
7 KOG0279 G protein beta subunit 99.8 3.9E-20 8.5E-25 184.4 17.2 148 439-603 65-217 (315)
8 KOG0285 Pleiotropic regulator 99.8 3.2E-20 7E-25 189.8 15.8 149 440-604 154-303 (460)
9 KOG0276 Vesicle coat complex C 99.8 2.4E-20 5.1E-25 201.3 14.9 150 440-604 100-253 (794)
10 KOG0284 Polyadenylation factor 99.8 9.5E-21 2.1E-25 196.4 10.7 149 440-604 141-290 (464)
11 KOG0286 G-protein beta subunit 99.8 3E-19 6.6E-24 179.0 19.3 152 439-605 57-256 (343)
12 KOG0263 Transcription initiati 99.8 4.7E-20 1E-24 204.0 14.7 149 440-604 496-645 (707)
13 KOG0291 WD40-repeat-containing 99.8 2.6E-19 5.7E-24 196.7 19.0 151 438-604 351-504 (893)
14 PF14580 LRR_9: Leucine-rich r 99.8 3.4E-21 7.5E-26 185.8 3.3 146 100-356 19-164 (175)
15 KOG0271 Notchless-like WD40 re 99.8 1.9E-19 4E-24 185.6 15.7 159 440-604 203-435 (480)
16 KOG0286 G-protein beta subunit 99.8 4.7E-19 1E-23 177.6 17.7 150 440-604 189-341 (343)
17 PTZ00421 coronin; Provisional 99.8 1.6E-18 3.5E-23 192.6 23.3 154 440-604 78-241 (493)
18 KOG0284 Polyadenylation factor 99.8 5.3E-20 1.1E-24 190.9 10.0 150 440-604 183-333 (464)
19 KOG0266 WD40 repeat-containing 99.8 1.2E-18 2.7E-23 192.4 20.9 149 440-604 206-360 (456)
20 KOG0645 WD40 repeat protein [G 99.8 2E-18 4.4E-23 171.6 20.0 152 440-604 64-221 (312)
21 KOG0266 WD40 repeat-containing 99.8 1.6E-18 3.6E-23 191.4 19.6 150 440-604 162-314 (456)
22 PTZ00420 coronin; Provisional 99.8 7.3E-18 1.6E-22 189.1 23.8 148 440-599 77-235 (568)
23 KOG0277 Peroxisomal targeting 99.8 1E-18 2.3E-23 172.3 14.1 153 440-604 107-261 (311)
24 KOG0277 Peroxisomal targeting 99.8 1.8E-18 3.9E-23 170.6 15.5 152 440-604 63-217 (311)
25 KOG0319 WD40-repeat-containing 99.8 2E-18 4.4E-23 189.6 16.1 148 440-603 466-614 (775)
26 KOG0273 Beta-transducin family 99.8 5.9E-18 1.3E-22 178.4 18.8 151 440-604 279-478 (524)
27 KOG0264 Nucleosome remodeling 99.8 1.7E-18 3.6E-23 182.1 14.2 174 423-604 114-299 (422)
28 KOG0302 Ribosome Assembly prot 99.8 2.6E-18 5.6E-23 177.0 14.7 157 440-604 214-374 (440)
29 KOG0645 WD40 repeat protein [G 99.8 2.6E-17 5.6E-22 163.8 19.2 154 439-604 16-176 (312)
30 KOG0315 G-protein beta subunit 99.8 1.2E-17 2.7E-22 164.4 15.9 150 440-604 43-241 (311)
31 KOG0265 U5 snRNP-specific prot 99.8 8.2E-18 1.8E-22 169.3 14.8 150 440-604 93-242 (338)
32 KOG0279 G protein beta subunit 99.8 1.8E-17 3.9E-22 165.5 16.8 141 440-594 108-250 (315)
33 KOG0283 WD40 repeat-containing 99.7 1.3E-17 2.9E-22 186.0 14.9 153 432-604 266-477 (712)
34 KOG0264 Nucleosome remodeling 99.7 1.8E-17 3.9E-22 174.3 14.9 155 440-604 230-400 (422)
35 KOG0273 Beta-transducin family 99.7 4.4E-17 9.5E-22 171.9 17.7 153 432-604 358-519 (524)
36 KOG0282 mRNA splicing factor [ 99.7 2.8E-18 6E-23 181.4 8.8 156 429-604 211-368 (503)
37 PLN00181 protein SPA1-RELATED; 99.7 1.1E-16 2.5E-21 188.1 23.3 150 440-604 535-686 (793)
38 KOG0275 Conserved WD40 repeat- 99.7 2.2E-18 4.7E-23 174.4 7.0 151 440-604 216-374 (508)
39 KOG0295 WD40 repeat-containing 99.7 7.4E-17 1.6E-21 165.8 16.7 150 440-604 238-402 (406)
40 KOG0315 G-protein beta subunit 99.7 2.1E-16 4.6E-21 155.7 17.2 158 440-604 86-284 (311)
41 KOG0292 Vesicle coat complex C 99.7 8.1E-17 1.8E-21 179.4 16.0 155 430-604 48-232 (1202)
42 KOG0276 Vesicle coat complex C 99.7 8.2E-17 1.8E-21 174.2 15.4 152 439-604 142-295 (794)
43 KOG0310 Conserved WD40 repeat- 99.7 1.7E-16 3.7E-21 168.1 17.5 152 440-605 113-265 (487)
44 KOG0285 Pleiotropic regulator 99.7 6.5E-17 1.4E-21 165.8 13.6 146 440-601 196-342 (460)
45 KOG0293 WD40 repeat-containing 99.7 5.8E-17 1.3E-21 168.6 13.3 161 440-604 272-509 (519)
46 KOG0269 WD40 repeat-containing 99.7 1.8E-17 4E-22 182.9 10.2 151 440-604 90-246 (839)
47 KOG0302 Ribosome Assembly prot 99.7 7.8E-17 1.7E-21 166.2 13.8 154 440-601 260-432 (440)
48 PTZ00421 coronin; Provisional 99.7 1E-15 2.2E-20 170.4 23.6 152 440-604 128-286 (493)
49 KOG0295 WD40 repeat-containing 99.7 2.2E-16 4.9E-21 162.3 16.5 149 440-604 196-360 (406)
50 cd00200 WD40 WD40 domain, foun 99.7 1.6E-15 3.4E-20 149.1 22.0 149 440-604 12-161 (289)
51 KOG0292 Vesicle coat complex C 99.7 6.7E-17 1.5E-21 180.1 13.3 151 438-604 10-161 (1202)
52 cd00200 WD40 WD40 domain, foun 99.7 9.9E-16 2.1E-20 150.5 20.2 149 440-604 138-287 (289)
53 KOG0640 mRNA cleavage stimulat 99.7 1.1E-16 2.4E-21 161.6 13.0 153 440-604 115-287 (430)
54 KOG0313 Microtubule binding pr 99.7 2.4E-16 5.1E-21 162.8 15.4 151 440-604 196-372 (423)
55 PLN00181 protein SPA1-RELATED; 99.7 1.3E-15 2.7E-20 179.3 23.8 150 440-604 578-734 (793)
56 KOG0265 U5 snRNP-specific prot 99.7 2.6E-16 5.6E-21 158.6 15.2 154 430-603 44-199 (338)
57 KOG0319 WD40-repeat-containing 99.7 1.3E-16 2.9E-21 175.5 14.1 157 440-604 368-531 (775)
58 KOG0641 WD40 repeat protein [G 99.7 7.6E-16 1.6E-20 149.9 17.6 159 429-604 85-299 (350)
59 KOG0269 WD40 repeat-containing 99.7 7.8E-17 1.7E-21 178.0 11.6 146 440-598 136-284 (839)
60 KOG0281 Beta-TrCP (transducin 99.7 7.3E-17 1.6E-21 164.7 10.1 144 440-604 240-384 (499)
61 KOG1407 WD40 repeat protein [F 99.7 4.7E-16 1E-20 154.2 15.1 152 439-603 22-214 (313)
62 KOG0270 WD40 repeat-containing 99.7 3.1E-16 6.7E-21 164.6 14.5 153 440-604 246-400 (463)
63 KOG4283 Transcription-coupled 99.7 5.9E-16 1.3E-20 155.5 15.8 154 440-604 46-215 (397)
64 KOG0316 Conserved WD40 repeat- 99.7 6.9E-16 1.5E-20 151.1 15.6 147 440-604 20-169 (307)
65 PTZ00420 coronin; Provisional 99.7 2.7E-15 5.9E-20 168.5 21.6 143 455-604 49-193 (568)
66 KOG0313 Microtubule binding pr 99.7 7.8E-16 1.7E-20 159.0 15.7 150 440-605 263-415 (423)
67 KOG0267 Microtubule severing p 99.7 4.2E-17 9.2E-22 178.9 6.2 149 440-604 73-222 (825)
68 KOG0278 Serine/threonine kinas 99.7 1.8E-15 3.8E-20 149.3 16.5 148 440-604 146-293 (334)
69 KOG0316 Conserved WD40 repeat- 99.7 1.2E-15 2.6E-20 149.5 15.1 147 440-604 62-209 (307)
70 KOG0282 mRNA splicing factor [ 99.7 5.1E-16 1.1E-20 164.4 12.4 161 440-604 302-501 (503)
71 KOG0318 WD40 repeat stress pro 99.6 5.2E-15 1.1E-19 158.0 19.1 148 440-603 193-345 (603)
72 KOG1539 WD repeat protein [Gen 99.6 5.2E-16 1.1E-20 172.6 11.9 264 305-604 326-602 (910)
73 KOG0274 Cdc4 and related F-box 99.6 4.8E-15 1E-19 165.8 19.3 144 440-604 252-396 (537)
74 KOG0643 Translation initiation 99.6 3E-15 6.5E-20 148.9 15.5 153 440-604 55-313 (327)
75 KOG0318 WD40 repeat stress pro 99.6 6E-15 1.3E-19 157.5 18.9 153 440-604 62-261 (603)
76 KOG0647 mRNA export protein (c 99.6 5.5E-15 1.2E-19 149.2 16.0 146 440-602 30-178 (347)
77 KOG0305 Anaphase promoting com 99.6 6.2E-15 1.4E-19 160.8 17.2 150 440-604 304-457 (484)
78 KOG0281 Beta-TrCP (transducin 99.6 7.7E-16 1.7E-20 157.3 8.8 141 440-604 200-344 (499)
79 KOG0305 Anaphase promoting com 99.6 2.5E-15 5.4E-20 163.8 13.3 148 440-603 220-371 (484)
80 KOG0306 WD40-repeat-containing 99.6 5.2E-15 1.1E-19 163.2 15.7 149 440-604 511-660 (888)
81 KOG0643 Translation initiation 99.6 1.9E-14 4.1E-19 143.3 17.3 159 440-604 13-216 (327)
82 KOG0289 mRNA splicing factor [ 99.6 1.7E-14 3.7E-19 151.2 16.4 151 438-604 262-415 (506)
83 KOG4328 WD40 protein [Function 99.6 7.9E-15 1.7E-19 154.6 13.4 165 438-605 187-396 (498)
84 KOG1407 WD40 repeat protein [F 99.6 2.2E-14 4.8E-19 142.4 15.3 146 440-599 67-293 (313)
85 KOG0973 Histone transcription 99.6 1.7E-14 3.6E-19 165.0 16.1 161 440-604 16-197 (942)
86 KOG0772 Uncharacterized conser 99.6 1.4E-14 3.1E-19 154.3 14.1 156 438-604 215-390 (641)
87 KOG0283 WD40 repeat-containing 99.6 2.6E-14 5.7E-19 159.9 16.8 148 440-604 372-528 (712)
88 KOG0296 Angio-associated migra 99.6 1.1E-13 2.4E-18 142.7 18.9 149 440-604 67-216 (399)
89 KOG0308 Conserved WD40 repeat- 99.6 4.5E-14 9.8E-19 154.0 16.2 152 440-604 120-281 (735)
90 KOG0310 Conserved WD40 repeat- 99.6 6.4E-14 1.4E-18 148.8 17.0 148 440-604 156-305 (487)
91 KOG1332 Vesicle coat complex C 99.6 1.6E-14 3.4E-19 142.3 11.5 161 432-604 55-237 (299)
92 KOG0303 Actin-binding protein 99.6 1.8E-14 4E-19 149.5 12.6 147 440-599 84-236 (472)
93 KOG0275 Conserved WD40 repeat- 99.6 6.4E-15 1.4E-19 149.5 8.6 150 440-602 266-417 (508)
94 KOG0296 Angio-associated migra 99.6 1E-13 2.2E-18 143.0 17.4 158 441-605 152-395 (399)
95 KOG1273 WD40 repeat protein [G 99.6 9.2E-14 2E-18 141.0 16.3 160 440-604 26-222 (405)
96 KOG0640 mRNA cleavage stimulat 99.5 1.9E-14 4.2E-19 145.5 10.9 152 440-604 175-331 (430)
97 KOG0289 mRNA splicing factor [ 99.5 1.9E-13 4.1E-18 143.5 17.6 150 440-602 306-456 (506)
98 KOG0294 WD40 repeat-containing 99.5 1.2E-13 2.6E-18 140.2 15.5 149 431-601 41-191 (362)
99 KOG0293 WD40 repeat-containing 99.5 1.2E-13 2.6E-18 144.1 15.3 151 440-604 227-380 (519)
100 KOG0307 Vesicle coat complex C 99.5 1.5E-14 3.3E-19 166.0 8.7 158 432-604 115-280 (1049)
101 KOG0291 WD40-repeat-containing 99.5 3.1E-13 6.7E-18 149.4 18.0 148 438-600 308-457 (893)
102 KOG1007 WD repeat protein TSSC 99.5 1.2E-13 2.6E-18 138.9 13.4 152 439-604 125-285 (370)
103 KOG0308 Conserved WD40 repeat- 99.5 9.5E-14 2.1E-18 151.5 13.4 152 449-604 84-239 (735)
104 KOG0647 mRNA export protein (c 99.5 3.4E-13 7.3E-18 136.4 16.1 159 432-599 71-315 (347)
105 KOG1332 Vesicle coat complex C 99.5 2E-13 4.3E-18 134.7 13.5 148 449-604 22-189 (299)
106 KOG1188 WD40 repeat protein [G 99.5 1.8E-13 4E-18 140.2 13.6 144 451-604 41-192 (376)
107 KOG0303 Actin-binding protein 99.5 1.7E-13 3.7E-18 142.4 13.5 151 448-604 42-199 (472)
108 KOG0290 Conserved WD40 repeat- 99.5 1.8E-13 4E-18 137.6 12.8 159 434-603 147-313 (364)
109 KOG0268 Sof1-like rRNA process 99.5 6.4E-14 1.4E-18 144.3 9.5 151 440-604 190-341 (433)
110 KOG0772 Uncharacterized conser 99.5 1.1E-13 2.5E-18 147.5 11.1 169 422-604 303-483 (641)
111 KOG0646 WD40 repeat protein [G 99.5 4.3E-13 9.2E-18 142.0 15.2 156 440-603 84-242 (476)
112 KOG0973 Histone transcription 99.5 3.4E-13 7.3E-18 154.4 14.7 153 430-598 66-240 (942)
113 KOG0299 U3 snoRNP-associated p 99.5 3.4E-13 7.3E-18 142.5 13.1 146 440-603 205-351 (479)
114 KOG0306 WD40-repeat-containing 99.5 8.2E-13 1.8E-17 146.1 16.1 147 440-604 68-215 (888)
115 KOG0300 WD40 repeat-containing 99.5 3.4E-13 7.4E-18 136.8 11.8 150 440-604 193-382 (481)
116 KOG0294 WD40 repeat-containing 99.5 2.4E-12 5.1E-17 131.0 17.7 159 440-604 86-277 (362)
117 KOG0274 Cdc4 and related F-box 99.4 2.2E-12 4.8E-17 144.6 18.5 144 440-604 211-355 (537)
118 KOG0270 WD40 repeat-containing 99.4 4.1E-13 9E-18 141.4 11.8 153 440-604 176-356 (463)
119 KOG1007 WD repeat protein TSSC 99.4 8.8E-13 1.9E-17 132.7 13.4 153 440-604 173-357 (370)
120 KOG4283 Transcription-coupled 99.4 1.2E-12 2.6E-17 132.0 14.0 162 428-604 93-272 (397)
121 KOG0646 WD40 repeat protein [G 99.4 3.9E-12 8.5E-17 134.8 18.5 152 440-604 126-303 (476)
122 KOG1445 Tumor-specific antigen 99.4 3.3E-13 7.1E-18 146.5 10.3 151 440-600 630-786 (1012)
123 KOG0301 Phospholipase A2-activ 99.4 2.4E-12 5.2E-17 141.5 16.4 142 440-605 143-285 (745)
124 KOG2445 Nuclear pore complex c 99.4 6.7E-12 1.5E-16 127.3 18.4 121 440-564 16-144 (361)
125 KOG0301 Phospholipase A2-activ 99.4 1.5E-12 3.2E-17 143.2 14.0 141 440-604 104-245 (745)
126 KOG1446 Histone H3 (Lys4) meth 99.4 1.1E-11 2.5E-16 126.1 18.9 149 438-604 15-166 (311)
127 KOG0300 WD40 repeat-containing 99.4 1.3E-12 2.8E-17 132.6 11.6 165 429-604 145-340 (481)
128 KOG0288 WD40 repeat protein Ti 99.4 4.7E-12 1E-16 132.5 15.6 140 450-604 312-457 (459)
129 KOG0267 Microtubule severing p 99.4 3.4E-13 7.4E-18 148.6 7.2 142 449-605 39-181 (825)
130 KOG0307 Vesicle coat complex C 99.4 6.4E-13 1.4E-17 152.8 8.3 155 440-604 164-323 (1049)
131 KOG0288 WD40 repeat protein Ti 99.4 1.3E-12 2.9E-17 136.5 9.7 145 440-603 222-366 (459)
132 KOG0771 Prolactin regulatory e 99.4 4.2E-12 9E-17 133.3 13.5 157 441-603 148-349 (398)
133 KOG1009 Chromatin assembly com 99.4 2E-12 4.4E-17 135.0 10.9 157 440-600 16-187 (434)
134 KOG0278 Serine/threonine kinas 99.4 2.2E-12 4.8E-17 127.6 10.4 147 440-603 103-249 (334)
135 KOG0321 WD40 repeat-containing 99.4 5.6E-12 1.2E-16 137.6 14.0 161 440-603 103-296 (720)
136 KOG1274 WD40 repeat protein [G 99.4 1.9E-11 4E-16 138.1 18.2 160 439-604 98-258 (933)
137 KOG2096 WD40 repeat protein [G 99.4 7E-12 1.5E-16 127.6 13.4 157 440-604 231-398 (420)
138 KOG0641 WD40 repeat protein [G 99.4 2.3E-11 5E-16 118.9 16.2 143 449-604 193-345 (350)
139 KOG1446 Histone H3 (Lys4) meth 99.3 5.9E-11 1.3E-15 121.0 18.7 150 439-604 102-258 (311)
140 KOG1523 Actin-related protein 99.3 1.5E-11 3.2E-16 125.4 14.2 157 440-605 13-173 (361)
141 KOG1445 Tumor-specific antigen 99.3 4.6E-12 1E-16 137.7 11.1 151 449-604 590-746 (1012)
142 KOG0639 Transducin-like enhanc 99.3 3.2E-12 6.8E-17 136.1 9.3 144 440-600 512-655 (705)
143 KOG4378 Nuclear protein COP1 [ 99.3 1.1E-11 2.3E-16 132.0 13.2 138 440-589 167-305 (673)
144 KOG0639 Transducin-like enhanc 99.3 1.1E-11 2.4E-16 132.0 13.1 152 440-604 422-577 (705)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1.1E-10 2.3E-15 118.7 19.7 149 440-604 33-183 (300)
146 KOG2096 WD40 repeat protein [G 99.3 3.6E-11 7.9E-16 122.5 14.9 150 440-604 89-304 (420)
147 KOG1036 Mitotic spindle checkp 99.3 6.5E-11 1.4E-15 120.3 16.7 142 440-602 16-157 (323)
148 KOG1036 Mitotic spindle checkp 99.3 1E-10 2.3E-15 118.8 16.8 145 440-603 57-202 (323)
149 KOG1310 WD40 repeat protein [G 99.3 1.5E-11 3.3E-16 132.2 11.3 162 440-603 53-226 (758)
150 KOG1034 Transcriptional repres 99.3 8.7E-12 1.9E-16 127.4 8.3 102 452-565 107-212 (385)
151 KOG0642 Cell-cycle nuclear pro 99.3 6.4E-11 1.4E-15 128.1 14.6 165 432-604 343-557 (577)
152 PF08662 eIF2A: Eukaryotic tra 99.3 4.6E-10 9.9E-15 110.5 19.2 138 442-597 10-163 (194)
153 KOG0299 U3 snoRNP-associated p 99.2 4.6E-11 9.9E-16 126.6 12.1 151 440-604 145-312 (479)
154 KOG2048 WD40 repeat protein [G 99.2 3.9E-10 8.4E-15 124.2 19.8 151 440-605 28-181 (691)
155 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 3.7E-10 7.9E-15 114.8 18.6 133 451-600 2-136 (300)
156 KOG2445 Nuclear pore complex c 99.2 4.8E-10 1E-14 114.1 18.9 162 440-604 62-314 (361)
157 KOG2919 Guanine nucleotide-bin 99.2 8.7E-11 1.9E-15 120.0 12.8 149 440-602 210-364 (406)
158 KOG4378 Nuclear protein COP1 [ 99.2 3.5E-11 7.5E-16 128.2 10.3 141 451-604 92-235 (673)
159 KOG4328 WD40 protein [Function 99.2 7.2E-11 1.6E-15 125.0 12.6 158 439-603 324-490 (498)
160 KOG1587 Cytoplasmic dynein int 99.2 2E-10 4.2E-15 128.6 16.1 163 440-603 245-467 (555)
161 COG2319 FOG: WD40 repeat [Gene 99.2 1.3E-09 2.7E-14 111.7 20.6 150 440-604 158-310 (466)
162 KOG1408 WD40 repeat protein [F 99.2 2E-10 4.3E-15 126.7 14.3 158 440-602 462-707 (1080)
163 KOG1063 RNA polymerase II elon 99.2 1.9E-10 4E-15 126.9 14.0 167 417-602 514-693 (764)
164 KOG1274 WD40 repeat protein [G 99.2 3.5E-10 7.6E-15 128.0 16.2 139 432-591 137-284 (933)
165 KOG2048 WD40 repeat protein [G 99.2 5.4E-10 1.2E-14 123.1 17.1 155 440-602 113-269 (691)
166 KOG2919 Guanine nucleotide-bin 99.2 2.5E-10 5.3E-15 116.7 13.3 151 440-604 161-323 (406)
167 KOG4227 WD40 repeat protein [G 99.2 3.4E-10 7.5E-15 117.8 13.5 148 440-600 59-217 (609)
168 KOG0649 WD40 repeat protein [G 99.2 5E-10 1.1E-14 110.8 13.8 156 442-604 15-182 (325)
169 KOG2055 WD40 repeat protein [G 99.1 1.2E-09 2.5E-14 116.1 17.1 159 440-604 216-413 (514)
170 KOG2055 WD40 repeat protein [G 99.1 4.8E-10 1E-14 119.0 14.0 155 440-604 347-508 (514)
171 KOG0322 G-protein beta subunit 99.1 1.6E-10 3.4E-15 115.5 9.7 142 452-603 167-318 (323)
172 KOG1539 WD repeat protein [Gen 99.1 1.1E-09 2.3E-14 123.1 16.5 148 445-606 166-316 (910)
173 KOG0642 Cell-cycle nuclear pro 99.1 9E-10 1.9E-14 119.4 14.5 127 440-568 297-430 (577)
174 KOG0650 WD40 repeat nucleolar 99.1 3.4E-09 7.3E-14 115.5 18.7 153 440-597 403-586 (733)
175 KOG1408 WD40 repeat protein [F 99.1 5.7E-10 1.2E-14 123.1 12.8 162 441-604 328-530 (1080)
176 KOG0290 Conserved WD40 repeat- 99.1 7.5E-10 1.6E-14 111.9 12.5 155 430-599 193-357 (364)
177 KOG1538 Uncharacterized conser 99.1 3.3E-10 7E-15 124.1 9.6 145 440-605 15-159 (1081)
178 KOG1034 Transcriptional repres 99.1 3.5E-09 7.6E-14 108.6 16.5 153 440-604 41-207 (385)
179 KOG2394 WD40 protein DMR-N9 [G 99.1 1.2E-09 2.7E-14 117.6 13.6 137 439-587 221-384 (636)
180 KOG0649 WD40 repeat protein [G 99.0 5.4E-09 1.2E-13 103.6 15.9 140 440-588 117-257 (325)
181 COG2319 FOG: WD40 repeat [Gene 99.0 1.6E-08 3.4E-13 103.6 20.0 148 440-604 112-267 (466)
182 KOG2139 WD40 repeat protein [G 99.0 3.3E-09 7.1E-14 110.0 14.7 158 440-603 101-263 (445)
183 KOG0321 WD40 repeat-containing 99.0 2E-09 4.2E-14 118.1 13.7 154 440-604 221-387 (720)
184 PF08662 eIF2A: Eukaryotic tra 99.0 6E-09 1.3E-13 102.6 16.0 115 440-573 62-187 (194)
185 KOG2110 Uncharacterized conser 99.0 1.1E-08 2.3E-13 106.5 18.2 150 440-605 90-245 (391)
186 KOG1063 RNA polymerase II elon 99.0 2.8E-09 6.1E-14 117.7 13.9 160 438-605 573-760 (764)
187 KOG1524 WD40 repeat-containing 99.0 1.1E-09 2.4E-14 117.8 9.8 139 440-598 107-246 (737)
188 KOG2106 Uncharacterized conser 99.0 2.2E-08 4.9E-13 107.4 19.3 155 440-603 249-472 (626)
189 KOG3881 Uncharacterized conser 99.0 1.3E-08 2.9E-13 106.4 15.2 152 442-604 153-316 (412)
190 KOG1188 WD40 repeat protein [G 98.9 1.1E-08 2.4E-13 105.5 13.9 129 449-589 83-223 (376)
191 KOG0650 WD40 repeat nucleolar 98.9 3.4E-09 7.4E-14 115.5 9.9 150 440-605 569-732 (733)
192 KOG1523 Actin-related protein 98.9 7.6E-09 1.7E-13 105.9 11.7 155 440-603 58-231 (361)
193 KOG2111 Uncharacterized conser 98.9 5.7E-08 1.2E-12 99.5 17.9 153 440-605 97-253 (346)
194 KOG2106 Uncharacterized conser 98.9 4.3E-08 9.3E-13 105.3 17.5 144 440-602 371-515 (626)
195 KOG1587 Cytoplasmic dynein int 98.9 1.5E-08 3.2E-13 113.7 14.5 155 438-604 348-512 (555)
196 KOG1517 Guanine nucleotide bin 98.9 1.4E-08 2.9E-13 116.6 14.1 158 440-604 1211-1377(1387)
197 KOG1517 Guanine nucleotide bin 98.9 1.9E-08 4.1E-13 115.4 14.6 150 443-604 1171-1329(1387)
198 KOG1009 Chromatin assembly com 98.9 6.4E-09 1.4E-13 109.2 9.9 117 440-568 68-199 (434)
199 KOG2139 WD40 repeat protein [G 98.9 5.2E-08 1.1E-12 101.3 16.2 149 440-602 143-305 (445)
200 KOG0644 Uncharacterized conser 98.9 1.4E-09 3.1E-14 121.8 4.7 144 440-602 193-340 (1113)
201 KOG1310 WD40 repeat protein [G 98.9 6E-09 1.3E-13 112.6 9.1 115 477-603 45-173 (758)
202 KOG1240 Protein kinase contain 98.9 6.3E-08 1.4E-12 112.8 17.6 150 440-590 1051-1251(1431)
203 KOG1273 WD40 repeat protein [G 98.9 1.2E-08 2.7E-13 104.2 10.4 100 485-597 26-126 (405)
204 PRK11028 6-phosphogluconolacto 98.8 3.9E-07 8.4E-12 96.2 21.4 156 440-604 37-201 (330)
205 KOG1334 WD40 repeat protein [G 98.8 7.5E-09 1.6E-13 110.7 7.9 157 440-604 145-308 (559)
206 KOG4547 WD40 repeat-containing 98.8 9.3E-08 2E-12 104.6 16.0 138 449-600 69-212 (541)
207 KOG1272 WD40-repeat-containing 98.8 6.4E-09 1.4E-13 110.6 6.7 143 439-599 211-354 (545)
208 PRK01742 tolB translocation pr 98.8 1.9E-07 4E-12 102.8 16.6 145 440-603 206-357 (429)
209 KOG1524 WD40 repeat-containing 98.8 9.9E-08 2.2E-12 103.1 13.8 133 440-602 148-280 (737)
210 KOG0280 Uncharacterized conser 98.7 1.4E-07 3.1E-12 95.8 13.9 139 440-590 124-266 (339)
211 KOG2394 WD40 protein DMR-N9 [G 98.7 8.9E-08 1.9E-12 103.6 13.1 153 449-603 184-357 (636)
212 KOG0974 WD-repeat protein WDR6 98.7 1E-07 2.3E-12 109.7 13.7 146 443-605 139-285 (967)
213 PRK05137 tolB translocation pr 98.7 6.6E-07 1.4E-11 98.5 18.8 142 440-598 204-354 (435)
214 KOG2321 WD40 repeat protein [G 98.7 1.9E-07 4.1E-12 101.8 13.7 163 415-602 162-337 (703)
215 PRK11028 6-phosphogluconolacto 98.7 8.3E-07 1.8E-11 93.7 18.3 160 440-604 82-254 (330)
216 KOG0644 Uncharacterized conser 98.7 1E-08 2.2E-13 115.2 3.6 110 478-604 186-296 (1113)
217 PRK03629 tolB translocation pr 98.6 1.9E-06 4.1E-11 94.9 19.1 144 440-600 201-353 (429)
218 KOG1538 Uncharacterized conser 98.6 1.2E-06 2.7E-11 96.7 17.0 154 438-605 133-290 (1081)
219 TIGR02800 propeller_TolB tol-p 98.6 1.7E-06 3.6E-11 94.0 17.9 144 440-600 192-344 (417)
220 PRK01742 tolB translocation pr 98.6 1E-06 2.2E-11 97.0 15.4 141 441-602 251-395 (429)
221 KOG1644 U2-associated snRNP A' 98.6 1.4E-08 3.1E-13 98.9 0.6 63 245-307 40-109 (233)
222 PRK04922 tolB translocation pr 98.6 1.9E-06 4.2E-11 94.9 17.4 144 440-600 206-358 (433)
223 KOG0280 Uncharacterized conser 98.5 5E-07 1.1E-11 92.0 10.7 152 440-603 168-327 (339)
224 KOG1272 WD40-repeat-containing 98.5 2.5E-07 5.5E-12 98.7 8.6 151 440-604 132-319 (545)
225 PRK02889 tolB translocation pr 98.5 4.3E-06 9.4E-11 92.0 17.5 146 440-600 198-350 (427)
226 KOG4227 WD40 repeat protein [G 98.5 1.7E-06 3.8E-11 90.6 13.3 160 422-594 95-261 (609)
227 KOG4497 Uncharacterized conser 98.5 3.4E-06 7.3E-11 87.1 15.1 149 440-604 51-236 (447)
228 KOG2110 Uncharacterized conser 98.5 2.9E-06 6.2E-11 88.7 14.6 110 443-565 133-249 (391)
229 KOG0322 G-protein beta subunit 98.5 2.9E-07 6.2E-12 92.5 6.8 112 440-563 208-322 (323)
230 KOG1963 WD40 repeat protein [G 98.4 4.2E-06 9.1E-11 95.3 16.5 151 441-603 164-317 (792)
231 KOG2321 WD40 repeat protein [G 98.4 1.7E-06 3.7E-11 94.5 12.8 143 441-588 137-282 (703)
232 KOG0974 WD-repeat protein WDR6 98.4 3.4E-06 7.5E-11 97.5 15.7 140 449-604 98-242 (967)
233 KOG1963 WD40 repeat protein [G 98.4 3.6E-06 7.9E-11 95.8 15.5 115 440-566 208-324 (792)
234 KOG0309 Conserved WD40 repeat- 98.4 5.6E-07 1.2E-11 100.4 7.3 154 440-604 70-228 (1081)
235 PRK04792 tolB translocation pr 98.4 1.6E-05 3.4E-10 88.2 18.1 146 440-602 220-374 (448)
236 KOG3207 Beta-tubulin folding c 98.3 2.8E-07 6E-12 98.6 3.8 226 100-355 121-377 (505)
237 PRK03629 tolB translocation pr 98.3 1.8E-05 4E-10 87.2 18.3 138 441-597 246-393 (429)
238 PRK04922 tolB translocation pr 98.3 1.6E-05 3.5E-10 87.6 17.7 142 441-600 251-401 (433)
239 PRK00178 tolB translocation pr 98.3 3.1E-05 6.7E-10 85.0 18.4 143 440-600 201-353 (430)
240 KOG3881 Uncharacterized conser 98.3 5.7E-06 1.2E-10 87.1 11.8 135 440-588 205-342 (412)
241 PRK02889 tolB translocation pr 98.3 1.7E-05 3.8E-10 87.2 15.9 146 440-601 242-394 (427)
242 KOG2695 WD40 repeat protein [G 98.2 2.3E-06 5E-11 88.8 7.6 139 440-586 255-401 (425)
243 KOG2111 Uncharacterized conser 98.2 5.3E-05 1.2E-09 78.2 17.1 111 445-566 142-258 (346)
244 KOG0771 Prolactin regulatory e 98.2 4.7E-06 1E-10 88.3 9.7 107 486-604 148-307 (398)
245 PRK05137 tolB translocation pr 98.2 4.7E-05 1E-09 84.0 17.4 125 460-600 182-312 (435)
246 KOG1334 WD40 repeat protein [G 98.2 3.4E-06 7.4E-11 90.7 7.1 163 440-604 235-462 (559)
247 KOG3914 WD repeat protein WDR4 98.2 1.9E-05 4.2E-10 83.4 12.3 152 440-604 65-219 (390)
248 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5E-11 68.0 4.2 56 128-184 4-61 (61)
249 PF02239 Cytochrom_D1: Cytochr 98.1 0.0001 2.2E-09 79.8 18.3 131 451-594 6-144 (369)
250 KOG4194 Membrane glycoprotein 98.1 4.1E-07 8.9E-12 100.1 -0.5 138 101-286 294-437 (873)
251 KOG4497 Uncharacterized conser 98.1 1.6E-05 3.4E-10 82.3 10.5 140 443-599 14-155 (447)
252 PRK01029 tolB translocation pr 98.1 7.6E-05 1.6E-09 82.4 16.8 146 442-600 235-393 (428)
253 TIGR02800 propeller_TolB tol-p 98.1 0.0001 2.2E-09 80.1 17.5 143 440-601 236-388 (417)
254 KOG0309 Conserved WD40 repeat- 98.1 1.1E-05 2.3E-10 90.5 8.9 157 417-591 99-259 (1081)
255 KOG1409 Uncharacterized conser 98.1 1.2E-05 2.6E-10 83.5 8.6 123 440-565 200-395 (404)
256 KOG1354 Serine/threonine prote 98.1 3.8E-05 8.2E-10 79.9 11.8 162 440-604 28-240 (433)
257 KOG4547 WD40 repeat-containing 98.0 7.1E-05 1.5E-09 82.4 14.5 143 447-598 2-164 (541)
258 KOG2695 WD40 repeat protein [G 98.0 1.2E-05 2.6E-10 83.6 7.4 153 440-604 214-372 (425)
259 PF00400 WD40: WD domain, G-be 98.0 1.8E-05 3.9E-10 56.5 6.3 38 471-511 2-39 (39)
260 PRK00178 tolB translocation pr 98.0 0.00025 5.5E-09 77.8 18.3 144 440-601 245-397 (430)
261 PF02239 Cytochrom_D1: Cytochr 98.0 0.00047 1E-08 74.7 20.1 142 442-600 41-194 (369)
262 PF14580 LRR_9: Leucine-rich r 98.0 6.3E-06 1.4E-10 80.0 4.5 110 94-207 33-149 (175)
263 PLN02919 haloacid dehalogenase 98.0 0.00043 9.4E-09 84.4 21.1 165 439-604 684-884 (1057)
264 KOG3914 WD repeat protein WDR4 97.9 2.4E-05 5.3E-10 82.7 8.4 103 456-573 128-232 (390)
265 KOG4532 WD40-like repeat conta 97.9 0.00039 8.4E-09 70.5 16.2 148 440-593 161-318 (344)
266 KOG4714 Nucleoporin [Nuclear s 97.9 1.8E-05 3.9E-10 79.7 6.7 120 440-562 182-316 (319)
267 PF11768 DUF3312: Protein of u 97.9 0.00035 7.6E-09 77.6 16.8 115 440-566 208-331 (545)
268 PF13855 LRR_8: Leucine rich r 97.9 6.9E-06 1.5E-10 65.2 2.1 59 147-208 1-59 (61)
269 KOG1064 RAVE (regulator of V-A 97.9 6.5E-05 1.4E-09 91.1 11.0 148 440-604 2211-2362(2439)
270 PF00400 WD40: WD domain, G-be 97.8 4.7E-05 1E-09 54.3 6.1 36 527-562 3-39 (39)
271 KOG0531 Protein phosphatase 1, 97.8 4.6E-06 9.9E-11 91.5 0.3 153 90-298 42-197 (414)
272 KOG1240 Protein kinase contain 97.8 0.00028 6E-09 83.4 14.4 152 440-603 1152-1329(1431)
273 PRK04792 tolB translocation pr 97.8 0.00098 2.1E-08 74.0 18.1 143 441-601 265-416 (448)
274 KOG2739 Leucine-rich acidic nu 97.8 9.2E-06 2E-10 82.3 1.4 81 122-204 40-122 (260)
275 KOG4714 Nucleoporin [Nuclear s 97.7 3.4E-05 7.4E-10 77.7 5.3 141 449-602 100-248 (319)
276 KOG1645 RING-finger-containing 97.7 0.00023 4.9E-09 75.6 11.5 145 440-598 196-351 (463)
277 KOG1064 RAVE (regulator of V-A 97.7 5.3E-05 1.1E-09 91.9 6.5 139 439-604 2253-2394(2439)
278 KOG2315 Predicted translation 97.7 0.0017 3.8E-08 71.5 17.5 120 460-599 251-375 (566)
279 KOG1354 Serine/threonine prote 97.7 0.00024 5.3E-09 74.1 10.4 160 440-604 167-355 (433)
280 KOG4194 Membrane glycoprotein 97.6 2.4E-05 5.3E-10 86.5 2.3 75 127-204 151-227 (873)
281 PRK01029 tolB translocation pr 97.6 0.0014 3E-08 72.4 15.6 132 441-589 284-426 (428)
282 KOG4190 Uncharacterized conser 97.6 0.00029 6.3E-09 77.0 9.7 148 440-602 738-900 (1034)
283 PF11768 DUF3312: Protein of u 97.6 0.0018 3.9E-08 72.1 16.1 111 485-605 208-326 (545)
284 KOG1259 Nischarin, modulator o 97.6 5.6E-05 1.2E-09 78.0 3.8 97 100-204 284-380 (490)
285 KOG2982 Uncharacterized conser 97.5 1.9E-05 4.1E-10 81.4 -0.5 108 100-209 146-260 (418)
286 PLN00113 leucine-rich repeat r 97.5 0.00016 3.6E-09 87.3 7.2 106 100-208 93-198 (968)
287 KOG2123 Uncharacterized conser 97.5 3.7E-05 8.1E-10 78.6 1.0 44 309-352 92-137 (388)
288 PRK04043 tolB translocation pr 97.5 0.0075 1.6E-07 66.5 19.0 141 440-599 190-340 (419)
289 KOG2066 Vacuolar assembly/sort 97.4 0.002 4.3E-08 73.7 14.4 137 449-602 82-228 (846)
290 KOG2041 WD40 repeat protein [G 97.4 0.0005 1.1E-08 77.2 9.4 141 439-591 16-170 (1189)
291 KOG4532 WD40-like repeat conta 97.4 0.0025 5.5E-08 64.8 13.3 125 452-590 130-263 (344)
292 PF08450 SGL: SMP-30/Gluconola 97.4 0.016 3.5E-07 58.5 19.1 150 438-597 86-245 (246)
293 KOG1645 RING-finger-containing 97.4 0.00038 8.2E-09 73.9 7.2 94 462-567 175-269 (463)
294 COG5170 CDC55 Serine/threonine 97.4 0.00089 1.9E-08 69.1 9.6 163 439-604 28-248 (460)
295 PF10282 Lactonase: Lactonase, 97.3 0.012 2.6E-07 63.0 18.4 159 440-604 146-318 (345)
296 COG4946 Uncharacterized protei 97.3 0.014 3.1E-07 63.4 18.3 138 445-601 327-466 (668)
297 KOG1008 Uncharacterized conser 97.3 4.6E-05 1E-09 84.7 -0.9 149 440-600 105-266 (783)
298 COG2706 3-carboxymuconate cycl 97.3 0.032 6.8E-07 59.0 19.9 169 422-602 76-268 (346)
299 PF10282 Lactonase: Lactonase, 97.3 0.035 7.7E-07 59.4 21.1 157 440-604 39-218 (345)
300 COG4946 Uncharacterized protei 97.3 0.013 2.8E-07 63.8 17.1 136 440-593 362-504 (668)
301 KOG2066 Vacuolar assembly/sort 97.2 0.0023 5.1E-08 73.1 11.9 134 440-602 42-182 (846)
302 KOG1912 WD40 repeat protein [G 97.2 0.0034 7.4E-08 71.5 12.9 145 442-602 20-180 (1062)
303 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.018 3.8E-07 62.0 17.7 101 460-574 27-146 (352)
304 KOG1275 PAB-dependent poly(A) 97.2 0.0028 6E-08 73.3 12.0 140 448-604 185-338 (1118)
305 KOG0531 Protein phosphatase 1, 97.2 0.00026 5.7E-09 77.7 3.5 125 128-286 121-253 (414)
306 KOG1409 Uncharacterized conser 97.2 0.0081 1.8E-07 63.0 13.9 160 440-604 71-266 (404)
307 PRK04043 tolB translocation pr 97.1 0.015 3.2E-07 64.2 16.8 142 441-601 236-391 (419)
308 PF12799 LRR_4: Leucine Rich r 97.1 0.00045 9.9E-09 51.6 3.4 44 147-196 1-44 (44)
309 PF15492 Nbas_N: Neuroblastoma 97.1 0.057 1.2E-06 55.6 19.6 155 441-603 47-254 (282)
310 PLN02919 haloacid dehalogenase 97.1 0.029 6.2E-07 68.8 20.5 162 440-604 570-766 (1057)
311 KOG4190 Uncharacterized conser 97.1 0.00065 1.4E-08 74.3 5.7 124 475-604 728-855 (1034)
312 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.04 8.6E-07 59.4 19.3 155 440-603 107-325 (352)
313 KOG3207 Beta-tubulin folding c 97.1 0.00026 5.7E-09 76.3 2.5 121 78-204 201-332 (505)
314 KOG2314 Translation initiation 97.1 0.0047 1E-07 68.1 11.8 136 442-594 215-362 (698)
315 cd00116 LRR_RI Leucine-rich re 97.0 0.0016 3.4E-08 67.7 7.7 107 99-208 80-203 (319)
316 PF08450 SGL: SMP-30/Gluconola 97.0 0.085 1.8E-06 53.2 20.0 144 442-603 4-159 (246)
317 PLN00113 leucine-rich repeat r 97.0 0.00078 1.7E-08 81.5 5.9 102 100-207 118-221 (968)
318 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00058 1.2E-08 78.3 3.9 139 440-593 1104-1246(1516)
319 PF08553 VID27: VID27 cytoplas 96.9 0.014 3E-07 68.5 15.0 147 445-598 488-639 (794)
320 TIGR03300 assembly_YfgL outer 96.9 0.022 4.9E-07 61.2 15.7 134 450-605 241-376 (377)
321 KOG2315 Predicted translation 96.9 0.026 5.6E-07 62.5 15.9 145 440-599 168-332 (566)
322 PF04762 IKI3: IKI3 family; I 96.9 0.02 4.3E-07 69.1 16.3 145 442-601 214-372 (928)
323 KOG0444 Cytoskeletal regulator 96.8 0.00048 1E-08 77.0 1.8 98 101-200 79-178 (1255)
324 PRK15370 E3 ubiquitin-protein 96.8 0.0034 7.3E-08 73.9 8.8 94 100-207 220-313 (754)
325 KOG1859 Leucine-rich repeat pr 96.8 0.00034 7.3E-09 79.5 0.5 71 127-204 189-260 (1096)
326 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.092 2E-06 47.1 15.0 101 440-559 2-109 (111)
327 PF04053 Coatomer_WDAD: Coatom 96.7 0.042 9.1E-07 61.0 15.5 133 440-602 35-168 (443)
328 cd00116 LRR_RI Leucine-rich re 96.6 0.0059 1.3E-07 63.4 7.5 148 52-208 9-175 (319)
329 PLN03210 Resistant to P. syrin 96.5 0.0056 1.2E-07 75.8 8.3 103 99-209 588-692 (1153)
330 smart00320 WD40 WD40 repeats. 96.4 0.0092 2E-07 39.4 5.5 31 480-511 10-40 (40)
331 COG2706 3-carboxymuconate cycl 96.4 0.43 9.4E-06 50.7 20.1 155 440-604 42-217 (346)
332 KOG2114 Vacuolar assembly/sort 96.4 0.062 1.3E-06 62.3 14.5 140 444-591 30-185 (933)
333 KOG1275 PAB-dependent poly(A) 96.3 0.022 4.8E-07 66.2 10.7 135 449-602 146-290 (1118)
334 COG5354 Uncharacterized protei 96.3 0.1 2.2E-06 57.5 15.0 139 440-594 176-332 (561)
335 KOG4640 Anaphase-promoting com 96.3 0.017 3.7E-07 64.8 9.3 94 483-588 21-116 (665)
336 PF12799 LRR_4: Leucine Rich r 96.2 0.0043 9.4E-08 46.3 3.0 37 128-165 4-41 (44)
337 PRK15387 E3 ubiquitin-protein 96.2 0.0095 2.1E-07 70.2 7.4 83 91-185 191-275 (788)
338 COG5170 CDC55 Serine/threonine 96.2 0.011 2.4E-07 61.2 6.8 155 440-599 175-358 (460)
339 smart00320 WD40 WD40 repeats. 96.2 0.013 2.9E-07 38.5 5.2 36 527-562 4-40 (40)
340 KOG0882 Cyclophilin-related pe 96.1 0.015 3.2E-07 63.0 7.5 146 449-604 19-170 (558)
341 KOG1912 WD40 repeat protein [G 96.0 0.014 3E-07 66.8 7.1 122 452-586 439-572 (1062)
342 KOG4640 Anaphase-promoting com 96.0 0.029 6.3E-07 63.0 9.5 89 440-543 23-114 (665)
343 KOG2041 WD40 repeat protein [G 96.0 0.041 8.9E-07 62.5 10.4 124 480-605 12-142 (1189)
344 smart00446 LRRcap occurring C- 95.9 0.0046 1E-07 40.8 1.8 22 321-342 2-23 (26)
345 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.45 9.7E-06 42.8 14.7 103 485-604 2-110 (111)
346 KOG1008 Uncharacterized conser 95.8 0.0031 6.7E-08 70.6 0.8 156 440-603 59-220 (783)
347 PF13360 PQQ_2: PQQ-like domai 95.8 0.71 1.5E-05 45.6 17.8 112 449-574 35-150 (238)
348 PRK15387 E3 ubiquitin-protein 95.8 0.011 2.3E-07 69.9 5.0 15 173-187 343-357 (788)
349 KOG3617 WD40 and TPR repeat-co 95.7 0.024 5.1E-07 65.4 7.4 78 432-513 54-131 (1416)
350 KOG3621 WD40 repeat-containing 95.7 0.056 1.2E-06 61.5 10.3 114 444-565 40-155 (726)
351 KOG3621 WD40 repeat-containing 95.7 0.055 1.2E-06 61.6 10.1 112 482-604 33-150 (726)
352 PF04762 IKI3: IKI3 family; I 95.7 0.35 7.6E-06 58.6 17.4 125 439-565 306-457 (928)
353 PF06977 SdiA-regulated: SdiA- 95.6 0.82 1.8E-05 47.0 17.4 157 440-603 24-196 (248)
354 KOG3617 WD40 and TPR repeat-co 95.5 0.019 4.2E-07 66.1 5.8 108 442-564 20-131 (1416)
355 KOG3665 ZYG-1-like serine/thre 95.5 0.02 4.3E-07 67.0 5.9 68 133-207 136-204 (699)
356 PRK15370 E3 ubiquitin-protein 95.5 0.02 4.3E-07 67.6 5.9 87 91-187 168-256 (754)
357 KOG1920 IkappaB kinase complex 95.4 0.16 3.4E-06 61.1 13.0 112 442-565 200-323 (1265)
358 KOG2395 Protein involved in va 95.4 0.11 2.3E-06 57.7 10.8 137 449-598 344-492 (644)
359 KOG0882 Cyclophilin-related pe 95.4 0.12 2.6E-06 56.2 10.9 151 440-605 56-228 (558)
360 KOG2314 Translation initiation 95.3 0.2 4.4E-06 55.7 12.5 111 480-600 443-559 (698)
361 KOG4579 Leucine-rich repeat (L 95.3 0.005 1.1E-07 57.5 0.2 85 114-201 43-129 (177)
362 COG5354 Uncharacterized protei 95.1 0.28 6.1E-06 54.1 12.8 145 440-596 74-241 (561)
363 PF03178 CPSF_A: CPSF A subuni 95.0 1.6 3.4E-05 46.1 18.0 141 450-604 42-198 (321)
364 PF13360 PQQ_2: PQQ-like domai 94.9 0.71 1.5E-05 45.6 14.5 102 458-572 1-102 (238)
365 COG4886 Leucine-rich repeat (L 94.9 0.024 5.2E-07 61.4 4.0 71 128-204 119-192 (394)
366 TIGR03300 assembly_YfgL outer 94.9 1.2 2.7E-05 47.7 17.2 108 449-573 64-172 (377)
367 KOG2079 Vacuolar assembly/sort 94.8 0.11 2.4E-06 61.6 9.1 95 496-600 100-197 (1206)
368 KOG1259 Nischarin, modulator o 94.7 0.013 2.8E-07 61.0 1.3 101 100-207 307-408 (490)
369 KOG0618 Serine/threonine phosp 94.7 0.0091 2E-07 69.9 0.1 98 100-206 383-484 (1081)
370 KOG1920 IkappaB kinase complex 94.6 0.99 2.1E-05 54.6 16.4 147 439-594 70-258 (1265)
371 KOG4237 Extracellular matrix p 94.6 0.003 6.6E-08 67.6 -3.7 84 101-187 92-179 (498)
372 KOG2982 Uncharacterized conser 94.6 0.024 5.1E-07 59.1 2.7 72 130-204 76-152 (418)
373 PF07433 DUF1513: Protein of u 94.5 2.9 6.3E-05 44.2 18.0 135 440-590 7-175 (305)
374 KOG0444 Cytoskeletal regulator 94.5 0.0075 1.6E-07 67.9 -1.2 55 129-185 249-304 (1255)
375 KOG4658 Apoptotic ATPase [Sign 94.0 0.04 8.7E-07 66.2 3.5 101 100-205 571-675 (889)
376 PLN03150 hypothetical protein; 94.0 0.057 1.2E-06 62.6 4.7 78 128-208 421-500 (623)
377 PLN03210 Resistant to P. syrin 93.8 0.072 1.6E-06 66.1 5.4 102 100-209 611-715 (1153)
378 PRK02888 nitrous-oxide reducta 93.8 1.2 2.6E-05 51.2 14.5 103 459-565 295-405 (635)
379 KOG2114 Vacuolar assembly/sort 93.7 2.2 4.7E-05 50.1 16.4 140 449-597 76-234 (933)
380 KOG3763 mRNA export factor TAP 93.6 0.049 1.1E-06 60.8 3.1 43 301-344 267-313 (585)
381 PF15492 Nbas_N: Neuroblastoma 93.6 4.8 0.0001 41.8 17.1 149 444-600 4-170 (282)
382 COG3391 Uncharacterized conser 93.6 5.4 0.00012 43.5 18.8 149 440-598 118-273 (381)
383 PRK11138 outer membrane biogen 93.4 2.8 6E-05 45.6 16.2 134 450-604 256-390 (394)
384 COG0823 TolB Periplasmic compo 93.4 1.2 2.5E-05 49.5 13.3 144 442-600 197-348 (425)
385 KOG2444 WD40 repeat protein [G 93.0 0.25 5.4E-06 49.7 6.6 105 449-565 69-178 (238)
386 PF12894 Apc4_WD40: Anaphase-p 92.9 0.25 5.4E-06 37.5 5.0 32 439-472 13-44 (47)
387 KOG0618 Serine/threonine phosp 92.7 0.04 8.6E-07 64.8 0.7 68 130-198 364-433 (1081)
388 COG3204 Uncharacterized protei 92.7 3.4 7.5E-05 43.3 14.5 164 434-602 83-257 (316)
389 KOG2247 WD40 repeat-containing 92.6 0.014 3E-07 63.9 -2.9 145 440-601 37-181 (615)
390 PF04053 Coatomer_WDAD: Coatom 92.6 0.85 1.8E-05 50.8 11.0 126 440-588 71-207 (443)
391 KOG4579 Leucine-rich repeat (L 92.4 0.044 9.6E-07 51.3 0.5 119 82-204 35-154 (177)
392 PF15390 DUF4613: Domain of un 92.4 3.3 7.2E-05 47.0 15.0 117 480-597 54-175 (671)
393 PF02897 Peptidase_S9_N: Proly 92.2 14 0.0003 40.2 19.8 115 440-566 126-262 (414)
394 PRK02888 nitrous-oxide reducta 92.1 3.2 7E-05 47.8 14.8 48 555-604 295-347 (635)
395 PLN03150 hypothetical protein; 92.0 0.2 4.3E-06 58.2 5.3 82 102-185 420-503 (623)
396 COG3386 Gluconolactonase [Carb 91.9 5.3 0.00011 42.4 15.5 155 438-601 111-279 (307)
397 KOG4649 PQQ (pyrrolo-quinoline 91.9 10 0.00022 39.3 16.4 141 445-601 18-159 (354)
398 KOG0472 Leucine-rich repeat pr 91.4 0.075 1.6E-06 57.5 0.8 128 127-286 390-526 (565)
399 PF00780 CNH: CNH domain; Int 91.1 14 0.00031 37.5 17.4 141 449-601 6-159 (275)
400 PF12894 Apc4_WD40: Anaphase-p 91.0 0.71 1.5E-05 35.0 5.6 33 534-567 11-43 (47)
401 PRK13616 lipoprotein LpqB; Pro 90.9 6 0.00013 45.8 15.7 144 440-591 352-510 (591)
402 KOG2079 Vacuolar assembly/sort 90.6 1 2.2E-05 53.9 9.1 97 449-557 98-198 (1206)
403 PF03178 CPSF_A: CPSF A subuni 90.2 14 0.00029 39.0 16.7 145 440-603 91-260 (321)
404 PF07433 DUF1513: Protein of u 89.9 4.2 9.1E-05 43.0 12.2 104 484-595 6-116 (305)
405 COG0823 TolB Periplasmic compo 89.6 2.1 4.5E-05 47.5 10.2 139 443-595 243-387 (425)
406 PF12234 Rav1p_C: RAVE protein 89.5 6.6 0.00014 45.6 14.3 112 449-564 40-156 (631)
407 KOG3630 Nuclear pore complex, 89.4 1.5 3.3E-05 52.8 9.2 132 456-597 120-263 (1405)
408 PF05096 Glu_cyclase_2: Glutam 89.3 30 0.00064 36.0 20.5 38 440-478 47-86 (264)
409 KOG4441 Proteins containing BT 89.3 3.9 8.4E-05 47.2 12.5 141 449-603 284-441 (571)
410 COG3391 Uncharacterized conser 88.9 22 0.00047 38.8 17.4 149 440-603 33-185 (381)
411 PF04841 Vps16_N: Vps16, N-ter 88.7 42 0.00092 37.0 21.5 55 535-589 217-271 (410)
412 TIGR02604 Piru_Ver_Nterm putat 88.5 16 0.00035 39.4 16.1 149 439-597 15-202 (367)
413 COG5167 VID27 Protein involved 88.4 6.1 0.00013 44.2 12.4 140 443-597 472-623 (776)
414 PF08553 VID27: VID27 cytoplas 88.3 4.3 9.3E-05 48.3 12.0 101 450-563 542-646 (794)
415 PF12234 Rav1p_C: RAVE protein 88.3 6.8 0.00015 45.5 13.3 87 497-591 42-142 (631)
416 PF05694 SBP56: 56kDa selenium 88.3 4.6 0.0001 44.6 11.4 136 457-597 219-393 (461)
417 PF08596 Lgl_C: Lethal giant l 87.8 7.3 0.00016 42.8 12.9 113 439-564 3-173 (395)
418 PF02897 Peptidase_S9_N: Proly 87.6 8.8 0.00019 41.8 13.5 105 485-601 126-250 (414)
419 KOG4237 Extracellular matrix p 87.4 0.19 4E-06 54.4 0.2 74 129-205 71-147 (498)
420 KOG4499 Ca2+-binding protein R 87.3 17 0.00037 37.2 13.8 107 486-598 161-275 (310)
421 PF10647 Gmad1: Lipoprotein Lp 87.2 29 0.00064 35.5 16.2 147 440-600 26-188 (253)
422 KOG4441 Proteins containing BT 86.9 3.8 8.2E-05 47.2 10.4 142 449-604 380-537 (571)
423 KOG1909 Ran GTPase-activating 86.8 0.35 7.7E-06 51.5 1.9 42 168-209 209-252 (382)
424 COG3386 Gluconolactonase [Carb 86.7 17 0.00036 38.6 14.4 142 445-602 32-187 (307)
425 PF08728 CRT10: CRT10; InterP 86.5 19 0.00041 42.4 15.7 151 450-603 49-241 (717)
426 cd00216 PQQ_DH Dehydrogenases 86.1 13 0.00028 41.9 14.1 131 452-595 303-455 (488)
427 PF10313 DUF2415: Uncharacteri 85.4 2.6 5.7E-05 31.4 5.3 30 440-469 3-34 (43)
428 KOG2444 WD40 repeat protein [G 85.3 2.3 4.9E-05 43.0 6.5 134 453-601 33-170 (238)
429 PF14727 PHTB1_N: PTHB1 N-term 85.2 41 0.00088 37.4 16.9 157 444-604 31-200 (418)
430 KOG1832 HIV-1 Vpr-binding prot 84.6 1.8 4E-05 50.9 6.2 73 526-599 1092-1165(1516)
431 COG4886 Leucine-rich repeat (L 84.5 0.39 8.5E-06 51.9 1.0 98 100-204 116-215 (394)
432 smart00370 LRR Leucine-rich re 84.4 0.58 1.3E-05 30.4 1.3 23 146-169 1-23 (26)
433 smart00369 LRR_TYP Leucine-ric 84.4 0.58 1.3E-05 30.4 1.3 23 146-169 1-23 (26)
434 PF08596 Lgl_C: Lethal giant l 84.3 45 0.00096 36.7 16.8 159 440-604 89-286 (395)
435 KOG4649 PQQ (pyrrolo-quinoline 83.8 28 0.0006 36.2 13.5 62 449-514 62-124 (354)
436 PRK11138 outer membrane biogen 83.5 17 0.00037 39.4 13.1 110 449-573 68-187 (394)
437 KOG1859 Leucine-rich repeat pr 83.3 0.31 6.7E-06 56.4 -0.5 102 100-209 187-290 (1096)
438 PHA02713 hypothetical protein; 82.6 17 0.00038 41.7 13.3 136 449-600 351-523 (557)
439 PF06977 SdiA-regulated: SdiA- 82.4 27 0.00058 36.0 13.2 109 477-596 16-136 (248)
440 KOG0617 Ras suppressor protein 82.2 0.39 8.4E-06 46.7 -0.2 66 111-185 49-115 (264)
441 KOG0532 Leucine-rich repeat (L 82.1 0.57 1.2E-05 52.9 1.0 67 130-198 126-192 (722)
442 KOG2123 Uncharacterized conser 82.1 0.36 7.9E-06 50.1 -0.5 71 142-216 36-106 (388)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.8 35 0.00076 39.0 15.3 30 545-574 471-500 (527)
444 KOG3665 ZYG-1-like serine/thre 81.8 0.79 1.7E-05 53.9 2.0 102 99-204 121-226 (699)
445 PF06433 Me-amine-dh_H: Methyl 81.6 7.6 0.00017 41.7 9.1 115 449-573 194-329 (342)
446 KOG2739 Leucine-rich acidic nu 81.6 0.55 1.2E-05 48.2 0.6 77 101-181 66-152 (260)
447 PF00930 DPPIV_N: Dipeptidyl p 81.0 54 0.0012 35.1 15.7 150 440-600 186-350 (353)
448 PF10168 Nup88: Nuclear pore c 80.8 43 0.00094 39.8 15.8 82 483-566 85-181 (717)
449 COG3490 Uncharacterized protei 80.1 60 0.0013 34.3 14.5 133 442-590 72-238 (366)
450 COG3490 Uncharacterized protei 80.0 13 0.00028 39.0 9.7 103 485-597 70-181 (366)
451 cd00216 PQQ_DH Dehydrogenases 79.8 28 0.00061 39.2 13.6 143 444-604 223-420 (488)
452 KOG0472 Leucine-rich repeat pr 79.4 0.52 1.1E-05 51.2 -0.5 138 62-205 379-535 (565)
453 PF07569 Hira: TUP1-like enhan 78.9 11 0.00023 38.0 8.8 71 494-566 21-97 (219)
454 PRK13616 lipoprotein LpqB; Pro 78.7 28 0.00061 40.4 13.3 99 483-596 350-466 (591)
455 PF10168 Nup88: Nuclear pore c 78.4 19 0.0004 42.8 11.8 76 439-515 86-181 (717)
456 KOG0617 Ras suppressor protein 78.0 0.37 8E-06 46.9 -1.9 68 130-197 84-152 (264)
457 TIGR03074 PQQ_membr_DH membran 77.9 43 0.00093 40.1 14.7 115 449-573 193-353 (764)
458 KOG2395 Protein involved in va 77.2 16 0.00035 41.2 10.0 95 455-564 399-500 (644)
459 PF08728 CRT10: CRT10; InterP 76.8 17 0.00037 42.8 10.7 107 449-563 113-245 (717)
460 PF00560 LRR_1: Leucine Rich R 76.6 1.5 3.2E-05 27.5 1.2 21 148-170 1-21 (22)
461 smart00368 LRR_RI Leucine rich 75.9 1.7 3.7E-05 29.0 1.5 24 99-122 1-24 (28)
462 PF15390 DUF4613: Domain of un 74.8 61 0.0013 37.3 13.8 117 440-566 59-188 (671)
463 PF14655 RAB3GAP2_N: Rab3 GTPa 73.9 26 0.00057 38.8 10.8 37 440-477 310-346 (415)
464 PF14870 PSII_BNR: Photosynthe 73.8 1.3E+02 0.0028 32.0 16.7 110 480-603 142-257 (302)
465 PF10313 DUF2415: Uncharacteri 73.3 9.1 0.0002 28.6 4.8 32 483-514 1-34 (43)
466 PF14870 PSII_BNR: Photosynthe 73.3 1.3E+02 0.0028 31.9 16.6 146 440-598 147-295 (302)
467 PHA02713 hypothetical protein; 72.1 39 0.00084 38.9 12.2 63 449-514 303-376 (557)
468 PRK15386 type III secretion pr 72.1 3.2 7E-05 45.8 3.2 47 130-182 57-104 (426)
469 PF07995 GSDH: Glucose / Sorbo 72.0 34 0.00075 36.4 11.0 112 439-556 3-135 (331)
470 KOG1909 Ran GTPase-activating 71.7 4.3 9.4E-05 43.5 3.9 109 100-209 157-281 (382)
471 PF00780 CNH: CNH domain; Int 71.6 1.2E+02 0.0026 30.7 17.6 122 440-572 38-173 (275)
472 PF10214 Rrn6: RNA polymerase 70.6 60 0.0013 38.9 13.7 116 440-566 148-278 (765)
473 PF04841 Vps16_N: Vps16, N-ter 70.6 87 0.0019 34.5 14.1 51 440-492 219-269 (410)
474 PF00930 DPPIV_N: Dipeptidyl p 70.4 6.9 0.00015 41.9 5.3 87 504-602 22-125 (353)
475 PF14583 Pectate_lyase22: Olig 69.9 69 0.0015 35.1 12.7 144 443-600 193-373 (386)
476 PF10647 Gmad1: Lipoprotein Lp 67.5 1.3E+02 0.0027 30.8 13.7 102 484-596 25-130 (253)
477 PF13306 LRR_5: Leucine rich r 66.4 7.9 0.00017 34.3 4.1 32 149-182 60-91 (129)
478 KOG4460 Nuclear pore complex, 66.4 45 0.00097 37.8 10.3 28 438-466 104-131 (741)
479 KOG1897 Damage-specific DNA bi 66.1 1.7E+02 0.0036 35.8 15.4 146 434-592 771-928 (1096)
480 KOG4658 Apoptotic ATPase [Sign 65.1 4 8.6E-05 49.5 2.3 53 143-196 567-619 (889)
481 PF05694 SBP56: 56kDa selenium 64.9 2.4E+02 0.0052 31.6 17.1 152 440-603 132-337 (461)
482 PF13306 LRR_5: Leucine rich r 64.7 4.9 0.00011 35.6 2.4 55 146-205 11-65 (129)
483 PRK10115 protease 2; Provision 64.5 3E+02 0.0065 32.6 18.3 112 440-564 129-255 (686)
484 PF13449 Phytase-like: Esteras 63.9 2E+02 0.0044 30.5 18.5 151 440-594 22-231 (326)
485 PF13516 LRR_6: Leucine Rich r 62.9 4.3 9.4E-05 25.7 1.2 24 99-122 1-24 (24)
486 PF11715 Nup160: Nucleoporin N 62.1 30 0.00065 39.4 8.7 79 494-572 157-256 (547)
487 PRK15386 type III secretion pr 61.7 12 0.00026 41.4 5.1 79 90-183 43-123 (426)
488 TIGR03606 non_repeat_PQQ dehyd 60.9 1.4E+02 0.0031 33.5 13.3 53 440-493 32-89 (454)
489 PF11715 Nup160: Nucleoporin N 59.8 41 0.00088 38.3 9.2 68 449-516 157-251 (547)
490 COG3823 Glutamine cyclotransfe 58.7 2.1E+02 0.0046 29.0 14.0 59 538-597 179-248 (262)
491 PF13504 LRR_7: Leucine rich r 56.9 6.3 0.00014 23.2 1.1 15 172-186 1-15 (17)
492 PF07569 Hira: TUP1-like enhan 56.5 49 0.0011 33.3 8.1 55 542-596 18-85 (219)
493 PF14655 RAB3GAP2_N: Rab3 GTPa 55.4 1.5E+02 0.0032 33.1 12.1 72 442-514 6-98 (415)
494 KOG3864 Uncharacterized conser 54.5 7.7 0.00017 38.8 1.9 83 123-207 99-185 (221)
495 COG5238 RNA1 Ran GTPase-activa 53.8 3.4 7.4E-05 43.1 -0.7 91 99-190 213-321 (388)
496 PHA03098 kelch-like protein; P 53.4 1.6E+02 0.0035 33.3 12.6 75 22-125 24-101 (534)
497 KOG1947 Leucine rich repeat pr 52.4 6.4 0.00014 43.0 1.1 92 117-209 206-306 (482)
498 PF12768 Rax2: Cortical protei 51.2 3.2E+02 0.0068 28.7 13.8 90 461-564 17-123 (281)
499 PF14781 BBS2_N: Ciliary BBSom 50.8 2.2E+02 0.0047 26.7 12.3 105 452-571 12-132 (136)
500 PF10214 Rrn6: RNA polymerase 50.8 1.3E+02 0.0028 36.1 11.7 104 483-588 146-257 (765)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=215.86 Aligned_cols=151 Identities=13% Similarity=0.215 Sum_probs=140.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
||..++||| +|++|+|++.|.+-++||++++......+ ||...|++++|+| ++.+++|||.|..-+|||+++
T Consensus 263 RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QE--GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt---- 334 (459)
T KOG0272|consen 263 RVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQE--GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT---- 334 (459)
T ss_pred hheeeeecC-CCceeeecccccchhhcccccchhhHhhc--ccccccceeEecC-CCceeeccCccchhheeeccc----
Confidence 477889999 99999999999999999999998877655 9999999999998 789999999999999999999
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++..+.+| .+|.+|+|+|.|..+||||.|++++|||+|..+.+.+++ +|.+-|+.|+|+|++.+.++|+|
T Consensus 335 ------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 335 ------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ------CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcc
Confidence 4678888866 669999999999999999999999999999999999999 89999999999998888899999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+++++
T Consensus 408 yD~t~ki 414 (459)
T KOG0272|consen 408 YDNTVKI 414 (459)
T ss_pred cCcceee
Confidence 9999985
No 2
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.5e-23 Score=210.37 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=171.8
Q ss_pred cCCCCCCCCCCc-chhhHHHHHhhhhccc-cccCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEE
Q 035500 387 QNSSKPKQPNIH-RTQHFFSRSLSAAKLG-SSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIV 464 (606)
Q Consensus 387 ~~~~~~~p~~~p-~~~~~y~ral~a~kl~-~~~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrI 464 (606)
..+++++|+.|| +++++|+|+++++|++ +|++||++++. +|.+| |.|++-+|.....+|+|+.||.|+|
T Consensus 23 ~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L~----gHrdG-----V~~lakhp~~ls~~aSGs~DG~Vki 93 (433)
T KOG0268|consen 23 RVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSLD----GHRDG-----VSCLAKHPNKLSTVASGSCDGEVKI 93 (433)
T ss_pred ccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhcc----ccccc-----cchhhcCcchhhhhhccccCceEEE
Confidence 457899999999 9999999999999999 99999999994 66789 5678999966689999999999999
Q ss_pred EECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc
Q 035500 465 INHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS 544 (606)
Q Consensus 465 WDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp 544 (606)
||+.+..+...++ .|.+.|.+|++.. ..++++|.|.+|+.|.+.. .++.++.+++.+..|..+.
T Consensus 94 WnlsqR~~~~~f~--AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-----------~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 94 WNLSQRECIRTFK--AHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-----------PPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred Eehhhhhhhheee--cccCceeeEEecc---cceEEecCCcceeeeeccC-----------Ccceeeecccccccccccc
Confidence 9999999888776 9999999999985 5689999999999999887 3788999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.++.|+|+|.+ |.|||.+...|+..+.+| ...|.+++|||....++++|++|+.|-
T Consensus 158 ~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 158 KNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred ccccccccCce--eeecccccCCccceeecC-CCceeEEecCCCcchheeeeccCCceE
Confidence 99999999975 999999999999999985 588999999999999999999998775
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.2e-22 Score=204.91 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|+| ++..+|+|+.|.+||+||..+..+..+.+ +|+.-|.+++|+| ++..|+||+.||+|++||..++.
T Consensus 118 Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~--- 190 (480)
T KOG0271|consen 118 VLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQ--- 190 (480)
T ss_pred EEEEEecC-CCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEECC-CcchhhccccCCeEEEecCCCCC---
Confidence 78999999 99999999999999999999888877665 9999999999999 67999999999999999999863
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccC-----CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNST-----DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~-----g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.-...+.+| ..|++++|+|- ..++|++|.||.|+|||+..+..+..+. ||+.+|+|++|-- ..++
T Consensus 191 ------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG--~gli 261 (480)
T KOG0271|consen 191 ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGG--EGLI 261 (480)
T ss_pred ------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcC--CceE
Confidence 234556654 55999999974 4699999999999999999999999999 8999999999954 4479
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++||.|++||.
T Consensus 262 ySgS~DrtIkv 272 (480)
T KOG0271|consen 262 YSGSQDRTIKV 272 (480)
T ss_pred EecCCCceEEE
Confidence 99999999985
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.2e-22 Score=209.29 Aligned_cols=149 Identities=18% Similarity=0.273 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ||.+++|||.|..-||||+++|+++-++. ||.++|.+++|+| ++..++|||.|++++|||++.
T Consensus 306 v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~--gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~----- 376 (459)
T KOG0272|consen 306 VFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA--GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM----- 376 (459)
T ss_pred cceeEecC-CCceeeccCccchhheeecccCcEEEEec--ccccceeeEeECC-CceEEeecCCCCcEEEeeecc-----
Confidence 67899999 99999999999999999999999998776 9999999999999 778999999999999999998
Q ss_pred ccccCCcceEEeecCC-CeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++..|. -|+.|.|+| .|.+++|+|+|++++||..++..+++.+. ||.+.|.++.++|++.+ ++|+|
T Consensus 377 -----r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~-i~t~s 449 (459)
T KOG0272|consen 377 -----RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQA-IATSS 449 (459)
T ss_pred -----cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCce-EEEec
Confidence 55677777654 499999999 46899999999999999999999999999 89999999999999985 89999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|.++|.
T Consensus 450 ~DRT~KL 456 (459)
T KOG0272|consen 450 FDRTIKL 456 (459)
T ss_pred cCceeee
Confidence 9999984
No 5
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.87 E-value=1.4e-23 Score=202.04 Aligned_cols=155 Identities=26% Similarity=0.389 Sum_probs=143.0
Q ss_pred hHHHHHHHHhhc-cceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccc
Q 035500 89 EYIMSLMHAIDQ-KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDC 167 (606)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~ 167 (606)
|.+.+..+-+|. +=|.+|||+ +.+.-..+|++.-.+-++|||++|.++|+..+|+++|||||.|. +|+||+|.++.
T Consensus 7 el~~q~pqy~~~~~e~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L 83 (233)
T KOG1644|consen 7 ELIVQAPQYINSVRERELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDL 83 (233)
T ss_pred HHHhhchhhhhhcccccccccc--ccccchhhccccccccceecccccchhhcccCCCccccceEEec-CCcceeeccch
Confidence 333333333332 478999999 99999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhcc
Q 035500 168 FSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFR 247 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (606)
-...|||..|.+++|+|.+| ++|.+|.++..|+
T Consensus 84 ~~~~p~l~~L~LtnNsi~~l----~dl~pLa~~p~L~------------------------------------------- 116 (233)
T KOG1644|consen 84 DTFLPNLKTLILTNNSIQEL----GDLDPLASCPKLE------------------------------------------- 116 (233)
T ss_pred hhhccccceEEecCcchhhh----hhcchhccCCccc-------------------------------------------
Confidence 99999999999999999999 9999998888777
Q ss_pred ccCcccchhhhcccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHH
Q 035500 248 DADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYM 327 (606)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyv 327 (606)
|+++++||++.+++||+||
T Consensus 117 -------------------------------------------------------------~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 117 -------------------------------------------------------------YLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred -------------------------------------------------------------eeeecCCchhcccCceeEE
Confidence 9999999999999999999
Q ss_pred HhhCCCceeccCCCCCcchHHHHHHHh
Q 035500 328 IASLPQLEVLDNLPIGRLDREIAKSVF 354 (606)
Q Consensus 328 I~~Lp~LkvLD~~~i~~~eRe~A~~if 354 (606)
|+++|+|++||++.|+..||+.|...|
T Consensus 136 l~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred EEecCcceEeehhhhhHHHHHHHHHHh
Confidence 999999999999999999999999888
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.86 E-value=3e-21 Score=213.40 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+| +.++|+++|.|++||+|.+.+..++-.++ ||..+|+.+.|+| .+-+|||||.|++-++|....
T Consensus 454 Vyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~----- 524 (707)
T KOG0263|consen 454 VYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH----- 524 (707)
T ss_pred eeeeeecc-cccceeeccCCcceeeeecccceeEEEec--CCCcceeeEEecC-CceEEEecCCCceeeeeeccc-----
Confidence 78889999 88999999999999999999988877666 9999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|.+.+.+|- .|.|++|||+++++++||.|.+|++||+.+|..++.|. ||+++|.+++|+|.|.+ +|+|+.
T Consensus 525 -----~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~-LaSg~e 597 (707)
T KOG0263|consen 525 -----NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRY-LASGDE 597 (707)
T ss_pred -----CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCce-Eeeccc
Confidence 45788888764 49999999999999999999999999999999999999 89999999999999997 899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|..
T Consensus 598 d~~I~i 603 (707)
T KOG0263|consen 598 DGLIKI 603 (707)
T ss_pred CCcEEE
Confidence 999874
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.84 E-value=3.9e-20 Score=184.39 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=130.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.|..+..++ ++++.++|+.||++|+||+.+|+....+ .||...|.+++|+| +.+.++|||.|.+|++|+....
T Consensus 65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f--~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~--- 137 (315)
T KOG0279|consen 65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRF--VGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV--- 137 (315)
T ss_pred EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEE--EecCCceEEEEecC-CCceeecCCCcceeeeeeeccc---
Confidence 366778999 9999999999999999999999776655 49999999999999 5689999999999999998873
Q ss_pred cccccCCcceEEeec---CCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYD---FEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~---~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+..+... .+.|.++.|+|. ..+++++|.|++|++||+++.+....+. ||++.++.++++|+|. +.
T Consensus 138 --------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lc 207 (315)
T KOG0279|consen 138 --------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LC 207 (315)
T ss_pred --------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EE
Confidence 3444443 345999999999 5799999999999999999999999999 8999999999999998 79
Q ss_pred EEEeCCCeEE
Q 035500 594 LLLHLTTMSR 603 (606)
Q Consensus 594 aTgS~DgtIR 603 (606)
++|+.||.+-
T Consensus 208 asGgkdg~~~ 217 (315)
T KOG0279|consen 208 ASGGKDGEAM 217 (315)
T ss_pred ecCCCCceEE
Confidence 9999999764
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.84 E-value=3.2e-20 Score=189.83 Aligned_cols=149 Identities=17% Similarity=0.313 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|+++.| ...++++|+.|++|+|||+.+|+...++. ||...|.++++++ ...+++|++.|+.|+.||+..
T Consensus 154 Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~----- 224 (460)
T KOG0285|consen 154 VRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY----- 224 (460)
T ss_pred EEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec--chhheeeeeeecc-cCceEEEecCCCeeEEEechh-----
Confidence 99999999 67899999999999999999999988765 9999999999998 567999999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+-++.+.+| +.|.+++.||.-..+++||.|.++++||+|+...+.++. ||+.+|.+|.+.|..+. ++|||.
T Consensus 225 -----nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpq-vit~S~ 297 (460)
T KOG0285|consen 225 -----NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQ-VITGSH 297 (460)
T ss_pred -----hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCc-eEEecC
Confidence 4567777766 559999999999999999999999999999999999999 89999999999999986 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 298 D~tvrl 303 (460)
T KOG0285|consen 298 DSTVRL 303 (460)
T ss_pred CceEEE
Confidence 999984
No 9
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.4e-20 Score=201.29 Aligned_cols=150 Identities=15% Similarity=0.198 Sum_probs=136.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+++++.||+.+ ++.|+|+|-+|++||++. ..+..+++ ||...|.+++|+|.+++.++|||.|+|||+|.+.+
T Consensus 100 IR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---- 172 (794)
T KOG0276|consen 100 IRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS---- 172 (794)
T ss_pred eeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc--CcceEEEEEEecCCCccceeeeeccccEEEEEcCC----
Confidence 89999999666 899999999999999986 34555555 99999999999999999999999999999999998
Q ss_pred cccccCCcceEEeecCCC-eEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQ-LTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~-V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..|..++++|.. |++|.+-+.| .+++||++|.++++||..+..++++++ ||+..|..+.|+|.-+ +++|
T Consensus 173 ------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lp-iiis 244 (794)
T KOG0276|consen 173 ------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELP-IIIS 244 (794)
T ss_pred ------CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCc-EEEE
Confidence 567888997655 9999998776 599999999999999999999999999 8999999999999998 7999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||+||++|+
T Consensus 245 gsEDGTvri 253 (794)
T KOG0276|consen 245 GSEDGTVRI 253 (794)
T ss_pred ecCCccEEE
Confidence 999999996
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.83 E-value=9.5e-21 Score=196.43 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.|++ ++.++++|+.+|.|++|+..-. .+..+. ..|..+|.+++|+| ++.+|+|||+||+|+|||....+
T Consensus 141 Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-nVk~~~-ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~k--- 213 (464)
T KOG0284|consen 141 VRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-NVKIIQ-AHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPK--- 213 (464)
T ss_pred ceeEEEcc-CCCEEEEcCCCceEEecccchh-hhHHhh-HhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCc---
Confidence 89999999 9999999999999999997643 333333 14458999999999 67899999999999999999842
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+.+|+. |.+++|||...++++||.|+.|++||.++++++.++. +|+..|..+.|+|++.+ |+|+|.
T Consensus 214 -------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~-Llt~sk 284 (464)
T KOG0284|consen 214 -------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNW-LLTGSK 284 (464)
T ss_pred -------hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCe-eEEccC
Confidence 3445566655 9999999999999999999999999999999999999 79999999999999975 899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 285 D~~~kv 290 (464)
T KOG0284|consen 285 DQSCKV 290 (464)
T ss_pred CceEEE
Confidence 998875
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.83 E-value=3e-19 Score=179.00 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----------------------------------------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP----------------------------------------- 477 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~----------------------------------------- 477 (606)
||.++.|++ |.++++++|.||.+.|||.-+...+..++
T Consensus 57 Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 57 KIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred ceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 477777777 77777777777777777754433322111
Q ss_pred -----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEcc-CCCEEE
Q 035500 478 -----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNS-TDDQFL 550 (606)
Q Consensus 478 -----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp-~g~~La 550 (606)
+.+|++.+.+..|.+ ...|+|+|.|.+..+||++++ ..+..|.+|.. |.+++++| ++++|+
T Consensus 136 ~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred eeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEE
Confidence 357999999999985 468999999999999999994 45778887654 99999999 789999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
||+-|++.++||+|.+..++.|+ +|.+.|++|+|.|+|- -|+|||.|++.|+.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~-afatGSDD~tcRly 256 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGD-AFATGSDDATCRLY 256 (343)
T ss_pred ecccccceeeeeccCcceeEeec-ccccccceEEEccCCC-eeeecCCCceeEEE
Confidence 99999999999999999999999 8999999999999997 49999999999973
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.83 E-value=4.7e-20 Score=204.05 Aligned_cols=149 Identities=14% Similarity=0.172 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+| .|-++||||.|++-++|........+.+. ||-+.|.|+.|+| +..++++||.|.+|++||+.++
T Consensus 496 VwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa--ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G---- 567 (707)
T KOG0263|consen 496 VWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA--GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTG---- 567 (707)
T ss_pred eeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc--ccccccceEEECC-cccccccCCCCceEEEEEcCCC----
Confidence 77888999 89999999999999999998877777654 9999999999999 7899999999999999999994
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.|.+ +.+|.+++|+|+|.++++|+.||.|++||+.+++.+..+. +|++.|+++.|+.+|. +||+||.
T Consensus 568 ------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~-vLasgg~ 639 (707)
T KOG0263|consen 568 ------NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGN-VLASGGA 639 (707)
T ss_pred ------cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCC-EEEecCC
Confidence 56888885 5679999999999999999999999999999999999999 7999999999999998 7999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||.
T Consensus 640 DnsV~l 645 (707)
T KOG0263|consen 640 DNSVRL 645 (707)
T ss_pred CCeEEE
Confidence 999984
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=2.6e-19 Score=196.69 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=137.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.++.+++++| ||+++|||+.||.|+|||..+|-+..++. .|++.|++++|+. .+.-++|.|.||+|+.||+..
T Consensus 351 ~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt--eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkR--- 423 (893)
T KOG0291|consen 351 DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFT--EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKR--- 423 (893)
T ss_pred cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEec--cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecc---
Confidence 3588999999 99999999999999999999999998877 9999999999997 678899999999999999987
Q ss_pred CcccccCCcceEEeecCCC--eEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....++|....+ ..+++..|.|.++.+|+.|. .|.+|++.+|+.+..+. ||.++|.+++|+|.+. ++|
T Consensus 424 -------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~-~La 494 (893)
T KOG0291|consen 424 -------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS-LLA 494 (893)
T ss_pred -------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC-eEE
Confidence 346777776555 67888899999999999884 69999999999999999 8999999999999998 699
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+||+|.+||.
T Consensus 495 S~SWDkTVRi 504 (893)
T KOG0291|consen 495 SGSWDKTVRI 504 (893)
T ss_pred eccccceEEE
Confidence 9999999995
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.82 E-value=3.4e-21 Score=185.84 Aligned_cols=146 Identities=29% Similarity=0.413 Sum_probs=72.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.|+|+++|++ .++..+++|.+.=..-++|||+.|.|.+++.++.+++|++|+|+ +|+|+++.+.+..++|+|+.|+|
T Consensus 19 ~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccc--cccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEEC
Confidence 4789999999 78888999986444567899999999999999999999999999 99999998766678999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|+|.++ ..+..|++||+|+
T Consensus 96 ~~N~I~~l-~~l~~L~~l~~L~---------------------------------------------------------- 116 (175)
T PF14580_consen 96 SNNKISDL-NELEPLSSLPKLR---------------------------------------------------------- 116 (175)
T ss_dssp TTS---SC-CCCGGGGG-TT------------------------------------------------------------
T ss_pred cCCcCCCh-HHhHHHHcCCCcc----------------------------------------------------------
Confidence 99999986 6666666666666
Q ss_pred ccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceeccC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~ 339 (606)
++++.+||||..++||.|||+.+|+|++||+
T Consensus 117 -------------------------------------------------~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 117 -------------------------------------------------VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -------------------------------------------------EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred -------------------------------------------------eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 5568999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhh
Q 035500 340 LPIGRLDREIAKSVFAR 356 (606)
Q Consensus 340 ~~i~~~eRe~A~~ifS~ 356 (606)
.+|++.||..|...|..
T Consensus 148 ~~V~~~ER~~A~~~f~~ 164 (175)
T PF14580_consen 148 QDVTEEERQEAEKLFKG 164 (175)
T ss_dssp EETTS-B----------
T ss_pred EEccHHHhccccccccc
Confidence 99999999999988873
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.9e-19 Score=185.55 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=133.4
Q ss_pred eeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNP----SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP----~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.+++|.| ....++|+++.||.|+|||+..+.++..+. ||+.+|+|++|- +.++++|||.|++|++|+...+
T Consensus 203 It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 203 ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred eeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--cCccceEEEEEc--CCceEEecCCCceEEEEEccch
Confidence 67889977 356799999999999999999999887665 999999999997 4579999999999999998653
Q ss_pred CCC---------c------------------------------------------------------------ccccCCc
Q 035500 516 PPK---------V------------------------------------------------------------ADARGNS 526 (606)
Q Consensus 516 ~~~---------~------------------------------------------------------------~~l~~~~ 526 (606)
..- + ++...++
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 110 0 0001123
Q ss_pred ceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 527 SVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 527 ~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|+....+|.+ |+.+.|+|++.++||+|-|+.|++||.++|+-+..|. ||-..|+.++|+.+++ ++++||.|.+++.
T Consensus 359 pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsR-LlVS~SkDsTLKv 435 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSR-LLVSGSKDSTLKV 435 (480)
T ss_pred chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCcc-EEEEcCCCceEEE
Confidence 4444455555 9999999999999999999999999999999999999 8999999999999987 7999999999885
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.81 E-value=4.7e-19 Score=177.64 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++++|.+++.+++|+-|+..++||++.+.++.+|. ||.+-|.+++|.| ++.-|+|||+|++.++||++.
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~--ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa----- 260 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE--GHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA----- 260 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeec--ccccccceEEEcc-CCCeeeecCCCceeEEEeecC-----
Confidence 88999999999999999999999999999999999877 9999999999999 678899999999999999998
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..|.+. .+|++|+|+..|+++++|..|.++.+||.-.++.+-.+. ||.++|.++..+|+|. .++||
T Consensus 261 -----D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~-av~Tg 333 (343)
T KOG0286|consen 261 -----DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGM-AVATG 333 (343)
T ss_pred -----CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCc-EEEec
Confidence 4567777753 559999999999999999999999999999999999999 8999999999999998 59999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|+|.++|+
T Consensus 334 SWDs~lri 341 (343)
T KOG0286|consen 334 SWDSTLRI 341 (343)
T ss_pred chhHheee
Confidence 99999985
No 17
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=1.6e-18 Score=192.60 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-----EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++|+|.++++||+|+.||+|++||+.++... ....+.+|...|.+++|+|..+.+|+||+.|++|++||+..
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 8899999988889999999999999999765321 12234599999999999996667999999999999999987
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCCCCeE
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHHSPLC 592 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~g~~L 592 (606)
+ ..+..+.. ...|.+++|+|++.++++++.|++|++||+++++.+..+. +|.+. +..+.|.|++..+
T Consensus 158 g----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 158 G----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred C----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeE
Confidence 3 45566664 5669999999999999999999999999999999998888 78765 4567899988876
Q ss_pred EEEE---eCCCeEEE
Q 035500 593 LLLL---HLTTMSRC 604 (606)
Q Consensus 593 LaTg---S~DgtIRc 604 (606)
+++| +.|+.|+.
T Consensus 227 vt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 227 ITLGCSKSQQRQIML 241 (493)
T ss_pred EEEecCCCCCCeEEE
Confidence 6555 34777764
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.81 E-value=5.3e-20 Score=190.92 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +...++++|.||+|+|||....+....+ .||.-.|.++.|+|. -++++|||.|..|++||.++
T Consensus 183 IRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprS----- 253 (464)
T KOG0284|consen 183 IRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRS----- 253 (464)
T ss_pred hheeccCC-CCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCc-cceeEEccCCceeEeecCCC-----
Confidence 88999999 6679999999999999998877766655 499999999999994 57999999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+| ..|..+.|+|++++++|+|.|..++++|+|+.+.++.++ +|+..|+++.|+|-.+.+|++|+.
T Consensus 254 -----g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 254 -----GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred -----cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccC
Confidence 4678888755 559999999999999999999999999999988899999 899999999999999999999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
||.|.-
T Consensus 328 Dgsvvh 333 (464)
T KOG0284|consen 328 DGSVVH 333 (464)
T ss_pred CCceEE
Confidence 998753
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=192.45 Aligned_cols=149 Identities=18% Similarity=0.350 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+.++|+| ++.++++|+.|++|+|||+ ..+....++. ||...|++++|+|.+ ++++||+.|++|++||+++
T Consensus 206 v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---- 277 (456)
T KOG0266|consen 206 VSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---- 277 (456)
T ss_pred eeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----
Confidence 88999999 9999999999999999999 4457777666 999999999999965 9999999999999999998
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCC--eEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--PLQLFTDMHREP--INVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~--I~sV~fsP~g~~LL 593 (606)
..++..+.+| ++|++++|+++++.+++++.|+.|++||+.++. ++..+. ++... +++++|+|++.+ +
T Consensus 278 ------~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~-l 349 (456)
T KOG0266|consen 278 ------GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKY-L 349 (456)
T ss_pred ------CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcE-E
Confidence 4578888865 569999999999999999999999999999998 567777 45555 999999999996 7
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|++++.
T Consensus 350 l~~~~d~~~~~ 360 (456)
T KOG0266|consen 350 LSASLDRTLKL 360 (456)
T ss_pred EEecCCCeEEE
Confidence 78889988875
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=171.63 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
||+++|+| .|++||+||.|.++-||.-..+ +++..+ .||...|.+++|++ ++++||+||+|++|-||.+.....
T Consensus 64 VRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~l--EGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 64 VRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATL--EGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred eeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeee--eccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc
Confidence 89999999 9999999999999999987754 445544 49999999999998 789999999999999999986432
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE---KPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..+...++.|.+ |..+.|||...+|+|+|+|++|++|.-..+ .+++++. +|.+.|++++|+|.|.. +
T Consensus 140 -------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~r-l 210 (312)
T KOG0645|consen 140 -------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSR-L 210 (312)
T ss_pred -------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCce-E
Confidence 467778887766 999999999999999999999999987733 5688898 89999999999999975 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|++|++
T Consensus 211 ~s~sdD~tv~I 221 (312)
T KOG0645|consen 211 VSCSDDGTVSI 221 (312)
T ss_pred EEecCCcceEe
Confidence 99999999986
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=191.43 Aligned_cols=150 Identities=20% Similarity=0.273 Sum_probs=133.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.|+| +|+.+++++.|+.+++|+..+++ ..... .+|...|.+++|+| ++..+++|+.|++|++||+...
T Consensus 162 v~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~-- 235 (456)
T KOG0266|consen 162 VTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD-- 235 (456)
T ss_pred eEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEECC-CCcEEEEecCCceEEEeeccCC--
Confidence 77889999 99999999999999999997766 33333 59999999999999 6689999999999999999542
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...++++.+| ..|++++|+|+++++++|+.|++|+|||+++++++..+. +|.+.|++++|++++.. ++++
T Consensus 236 -------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~-l~s~ 306 (456)
T KOG0266|consen 236 -------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNL-LVSA 306 (456)
T ss_pred -------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCE-EEEc
Confidence 3567888765 559999999999999999999999999999999999999 89999999999999985 7788
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||.
T Consensus 307 s~d~~i~v 314 (456)
T KOG0266|consen 307 SYDGTIRV 314 (456)
T ss_pred CCCccEEE
Confidence 99999986
No 22
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=7.3e-18 Score=189.13 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-E-----EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-A-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|.+++|+|.++++||+|+.||+|+|||+.++.. . ....+.+|.+.|.+++|+|.+...++|||.|++|++||++
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 889999996689999999999999999976421 1 1113458999999999999655567899999999999999
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE-----EEeCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA-----KFSHH 588 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV-----~fsP~ 588 (606)
.+ ..+..+.++..|.+++|+|+|.++++++.|++|+|||+++++.+..+. +|.+.+.+. .|+++
T Consensus 157 tg----------~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 157 NE----------KRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CC----------cEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCC
Confidence 84 344556667789999999999999999999999999999999999998 798765443 35578
Q ss_pred CCeEEEEEeCC
Q 035500 589 SPLCLLLLHLT 599 (606)
Q Consensus 589 g~~LLaTgS~D 599 (606)
+.+++ |+|.|
T Consensus 226 ~~~Il-TtG~d 235 (568)
T PTZ00420 226 DNYIL-STGFS 235 (568)
T ss_pred CCEEE-EEEcC
Confidence 88654 54444
No 23
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-18 Score=172.34 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|++.....++++|.||+|++|+...+..+.++. ||..-|++.+|+|..++.++|+|.|+++++||++...
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--- 181 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN--GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--- 181 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeec--CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---
Confidence 78899999999999999999999999998888888765 9999999999999999999999999999999999852
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+.....-|...+.++.|+.-. +.++||+.|+.|+.||+|+- .++.++. +|.-+|..|+|+|....++|++|
T Consensus 182 ------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 182 ------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred ------ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhcc
Confidence 233333344579999999765 69999999999999999975 5688886 89999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|-++|+
T Consensus 255 YDmT~ri 261 (311)
T KOG0277|consen 255 YDMTVRI 261 (311)
T ss_pred ccceEEe
Confidence 9999986
No 24
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=170.64 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+-.++|++...+.+++++.||.+++||... ..++. .+..|+..|.++.|++.....++++|.|++||+|+..-
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~--~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---- 136 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIH--KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---- 136 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchh--HHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----
Confidence 446889999999999999999999999542 23333 44589999999999998888899999999999999987
Q ss_pred cccccCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+..+.++.+|.. |...+|||.. ++|+++|.|+++++||+|..-....++ +|...|.++.|+.....+++||
T Consensus 137 ------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 137 ------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEec
Confidence 567889998766 9999999985 899999999999999999654444488 7999999999999999999999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.||+
T Consensus 210 ~vd~~vr~ 217 (311)
T KOG0277|consen 210 GVDNLVRG 217 (311)
T ss_pred CCCceEEE
Confidence 99999997
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=2e-18 Score=189.64 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++++| +..++||||.|++.+||+++......++. ||+..|+++.|+| ++..++|+|.|+|||||.+.+
T Consensus 466 IN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~----- 536 (775)
T KOG0319|consen 466 INCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST----- 536 (775)
T ss_pred ccceEecC-CCceEEecccccceeeecccCceEEEEee--CCccceEEEEecc-ccceeEeccCCceEEEEEecc-----
Confidence 78999999 77899999999999999999888877766 9999999999998 668999999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+| .+|..++|-.+|..++|++.||-+++|++.+++++.++. +|.+.|++++-+|.+. +++||+.
T Consensus 537 -----fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~-~~~tgg~ 609 (775)
T KOG0319|consen 537 -----FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLD-MFVTGGG 609 (775)
T ss_pred -----ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccc-eeEecCC
Confidence 6799999965 559999999999999999999999999999999999999 8999999999999988 6899999
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
|+.|-
T Consensus 610 Dg~i~ 614 (775)
T KOG0319|consen 610 DGRII 614 (775)
T ss_pred CeEEE
Confidence 99874
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.78 E-value=5.9e-18 Score=178.36 Aligned_cols=151 Identities=21% Similarity=0.345 Sum_probs=130.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|.++.|+. .|++|++|+.||++.+||..+|.....+. +.|
T Consensus 279 I~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 279 IFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred eEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 77899999 99999999999999999987766544332 357
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCC-CeEEEEEccCC---------CEEE
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFE-QLTSVHVNSTD---------DQFL 550 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g---------~~La 550 (606)
|.++|.++.|+| .+.+|+|||+|+|++||.... ..+...+..|. .|..+.|+|+| ..++
T Consensus 358 H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~----------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 358 HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ----------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred ccCceEEEEECC-CCceEEEecCCCeeEeeecCC----------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 999999999999 678999999999999999877 34556666554 59999999874 3899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++.|++|++||+..+.++..|. .|+.+|++++|+|+|.+ +|+|+.||.|..
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~y-lAsGs~dg~V~i 478 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRY-LASGSLDGCVHI 478 (524)
T ss_pred EeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcE-EEecCCCCeeEe
Confidence 99999999999999999999998 69999999999999996 899999998864
No 27
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=1.7e-18 Score=182.07 Aligned_cols=174 Identities=21% Similarity=0.311 Sum_probs=141.7
Q ss_pred eeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--------ceEEEEeccCCCCCEEEEEEeeCC
Q 035500 423 PVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG--------NVACYIPSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 423 ~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg--------~~v~~~~~~gH~~~V~~L~fsp~~ 494 (606)
.+++...+.|+|+ ++|++ +.|+++.++|+++..+.|.|||..+. .+...+.+.||.+.-++++|++..
T Consensus 114 ~v~i~~~i~h~gE-VnRaR---ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 114 KVEISQKINHDGE-VNRAR---YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred ceEEEEeccCCcc-chhhh---hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 4444456668888 45555 99999999999999999999997652 222334567999999999999988
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECC--CCceeE
Q 035500 495 PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDIN--TEKPLQ 570 (606)
Q Consensus 495 ~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlr--t~k~v~ 570 (606)
...++||+.|++|++||++....... ...+...+.+| ..|..|+||+.. .+|+++++|+.+.|||+| +.++..
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~---~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDK---VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCc---cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 89999999999999999998543211 12355566655 559999999986 699999999999999999 556666
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
... +|++.|+|++|+|.+.+++||||.|++|+.
T Consensus 267 ~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L 299 (422)
T KOG0264|consen 267 SVK-AHSAEVNCVAFNPFNEFILATGSADKTVAL 299 (422)
T ss_pred ccc-ccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence 666 899999999999999999999999999975
No 28
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=177.04 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
-..++|||.....+++|.--+.|++|...+|... ...++.+|+.+|-+|+|+|...+.|+|||.||+|+|||++.+..
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~- 292 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK- 292 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-
Confidence 3578999977778899999999999999887653 34456799999999999998888999999999999999999643
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---EKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+.++.+-.|.+.|+-|+|+..-.++|+|++||+++|||+|+ ++++..|++ |+.+|++|.|+|....++++
T Consensus 293 ------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 293 ------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred ------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEe
Confidence 45566645667799999999888999999999999999995 578999994 99999999999999999999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
+|.|..|..
T Consensus 366 sg~D~Qiti 374 (440)
T KOG0302|consen 366 SGEDNQITI 374 (440)
T ss_pred ccCCCcEEE
Confidence 999988753
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=163.81 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=132.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|+..++|||..|.+||+||.|+.||||+...+ .+...+. .+|+..|..++|+| .+++|++||.|.++.||.-...
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld-~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD-DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC
Confidence 58999999955889999999999999998853 2333332 38999999999999 5689999999999999987754
Q ss_pred CCCcccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 516 PPKVADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTE---KPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
. .+++.++.+|. .|.+|+|+++|++||++|.|+.|=||.+..+ +....++ +|+..|..+.|+|...
T Consensus 94 e--------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 94 E--------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED- 163 (312)
T ss_pred c--------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc-
Confidence 3 46788998764 4999999999999999999999999998854 4577788 7999999999999887
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+|+++|+|.+||.
T Consensus 164 lL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 164 LLFSCSYDNTIKV 176 (312)
T ss_pred eeEEeccCCeEEE
Confidence 7999999999985
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=1.2e-17 Score=164.36 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+++.| ++..||+|+.-. ||+||++++...+...+.+|++.|..+.|.- ++++++|||+||++||||++.
T Consensus 43 VNrLeiTp-dk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~----- 114 (311)
T KOG0315|consen 43 VNRLEITP-DKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRS----- 114 (311)
T ss_pred eeeEEEcC-CcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccC-----
Confidence 88899999 888999888655 9999999987766566669999999999996 789999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---------------------------------
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--------------------------------- 566 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--------------------------------- 566 (606)
..+.+.+++..+|++|..||....+++|..+|.|++||++..
T Consensus 115 -----~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 115 -----LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred -----cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 345556666777777777777777777777777777777653
Q ss_pred ----------------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 567 ----------------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 567 ----------------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++..++ +|.+.+....++|++++ +||+|.|.++++
T Consensus 190 ~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~-lat~ssdktv~i 241 (311)
T KOG0315|consen 190 NCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKY-LATCSSDKTVKI 241 (311)
T ss_pred cEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcE-EEeecCCceEEE
Confidence 1224455 79999999999999996 899999999986
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.76 E-value=8.2e-18 Score=169.31 Aligned_cols=150 Identities=22% Similarity=0.281 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|++ +++.++++|.|.+|+.||+++|+.+..++ +|.+-|..+.-...+..++.||+.||++++||+++
T Consensus 93 VM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~----- 164 (338)
T KOG0265|consen 93 VMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK----- 164 (338)
T ss_pred eEeeeecc-CCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecc-----
Confidence 77889999 99999999999999999999999988655 99999999986655677899999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+.+++++..+.+++++.|..++..+++|+-|+.|++||+|.+....++. ||...|+.+..+|.|.+ +.+-+.|
T Consensus 165 -----k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~-llsnsMd 237 (338)
T KOG0265|consen 165 -----KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSF-LLSNSMD 237 (338)
T ss_pred -----cchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCc-ccccccc
Confidence 6788899999999999999999999999999999999999999999999 89999999999999997 6789999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
.++|.
T Consensus 238 ~tvrv 242 (338)
T KOG0265|consen 238 NTVRV 242 (338)
T ss_pred ceEEE
Confidence 99885
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-17 Score=165.52 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=119.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| |...+++|+.|.+|++||+.. .+.-++...+|++-|.+++|+|.. ..+++++|.|++||+||++..
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--- 182 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--- 182 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---
Confidence 88999999 888999999999999999874 444444444558899999999953 568999999999999999983
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
+....+.+| +.++.+.++|+|.+.++||.||.+.+||++.++.+..+. |...|++++|+|...++.+
T Consensus 183 -------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 183 -------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred -------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEee
Confidence 233445544 559999999999999999999999999999999988887 7899999999999876443
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.3e-17 Score=185.95 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=130.2
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------------------------------ceE-------
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------------------------------NVA------- 473 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------------------------------~~v------- 473 (606)
|+|. |.++.||+ ||.|||+||.||.||||.+... +..
T Consensus 266 h~ga----Iw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 266 HKGA----IWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cCCc----EEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 5565 88999999 9999999999999999986440 000
Q ss_pred --------------------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec
Q 035500 474 --------------------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD 533 (606)
Q Consensus 474 --------------------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~ 533 (606)
+...+.||.+.|.+|.|+.. +.|+|+|.|.|||+|++.. +.|+.+|.|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~----------~~CL~~F~H 408 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGR----------KECLKVFSH 408 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCC----------cceeeEEec
Confidence 00014689999999999963 6899999999999999997 689999999
Q ss_pred CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 ~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+-|+||+|||.+ ++|+||+-||+|+||++...+.+.-.. . ..-|++++|.|+|++ .+.|+.+|.+|.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l-~~lITAvcy~PdGk~-avIGt~~G~C~f 477 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-L-RDLITAVCYSPDGKG-AVIGTFNGYCRF 477 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-h-hhhheeEEeccCCce-EEEEEeccEEEE
Confidence 9999999999975 799999999999999999887776555 3 489999999999986 789999998874
No 34
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.74 E-value=1.8e-17 Score=174.30 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++|+|.+.+++++++.|+.+.|||.+++.........+|.+.|++++|+|.++..|||||.|++|++||+|..
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---- 305 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---- 305 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc----
Confidence 7788999999999999999999999999953222222345999999999999999999999999999999999996
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc--------------eeEEEcCCCCCCeEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK--------------PLQLFTDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k--------------~v~~l~~gH~~~I~sV 583 (606)
..++.++.+| ..|..|.|+|.. ..+||+|.|+.+.+||+..-. ++..-. ||+..|..+
T Consensus 306 -----~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~kV~Df 379 (422)
T KOG0264|consen 306 -----NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAKVSDF 379 (422)
T ss_pred -----ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec-Ccccccccc
Confidence 3477788765 559999999996 689999999999999998521 123344 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|+|..++++++.+.|++..+
T Consensus 380 sWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred cCCCCCCeEEEEecCCceEEE
Confidence 999999999999999988753
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.74 E-value=4.4e-17 Score=171.87 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=134.3
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC--------CCEEEEEEC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY--------PSKLVAGSD 503 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~--------~~~LaSgS~ 503 (606)
|+|+ |.++.|+| .+.+|+++|+|++++||....+.....+ .+|...|+.+.|+|.+ +..+++++.
T Consensus 358 H~g~----V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 358 HHGE----VNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ccCc----eEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence 4566 88999999 8999999999999999998887777654 4999999999999864 346999999
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
|++|++||+.. ..|+.+| +|..+|.+++|+|+|.++|+|+.||.|.||++++++.++.... .+.|..
T Consensus 431 dstV~lwdv~~----------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ife 498 (524)
T KOG0273|consen 431 DSTVKLWDVES----------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFE 498 (524)
T ss_pred CCeEEEEEccC----------CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEE
Confidence 99999999998 4678888 5778899999999999999999999999999999999999983 678999
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
++|+..|.. +..+-.|+.++|
T Consensus 499 l~Wn~~G~k-l~~~~sd~~vcv 519 (524)
T KOG0273|consen 499 LCWNAAGDK-LGACASDGSVCV 519 (524)
T ss_pred EEEcCCCCE-EEEEecCCCceE
Confidence 999999975 566666888776
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.74 E-value=2.8e-18 Score=181.38 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=141.7
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
++|.+| |+++.|.|..+.++++|+.|+.|+||++-. ++++.++. ||..+|.+++|++ .+..++|+|.|+++
T Consensus 211 ~gH~kg-----vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--gH~k~Vrd~~~s~-~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 211 SGHTKG-----VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--GHRKPVRDASFNN-CGTSFLSASFDRFL 282 (503)
T ss_pred cCCccc-----cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--cchhhhhhhhccc-cCCeeeeeecceee
Confidence 455567 667889998999999999999999999865 88888776 9999999999997 67889999999999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
++||.++ ..++..+.....++++.|+|++ +.|++|+.|+.|+.||+|+++.+++.. .|-+.|..+.|-
T Consensus 283 KlwDtET----------G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTET----------GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFV 351 (503)
T ss_pred eeecccc----------ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEc
Confidence 9999999 4577888888889999999998 899999999999999999999999998 699999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
+.|.. ++++|.|+++|+
T Consensus 352 ~~g~r-FissSDdks~ri 368 (503)
T KOG0282|consen 352 DEGRR-FISSSDDKSVRI 368 (503)
T ss_pred cCCce-EeeeccCccEEE
Confidence 99996 899999999986
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.74 E-value=1.1e-16 Score=188.07 Aligned_cols=150 Identities=20% Similarity=0.283 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+|.++.++|+|+.||+|++||+.+++.+..+. +|.+.|++++|+|.++.+|+|||.||+|++||++.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~----- 607 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ----- 607 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-----
Confidence 67899998778999999999999999999988877655 99999999999986778999999999999999987
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.++..|.++.|++ ++.++++|+.||.|++||+++++ ++..+. +|...|++++|. ++. .+++||
T Consensus 608 -----~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~-~lvs~s 679 (793)
T PLN00181 608 -----GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSS-TLVSSS 679 (793)
T ss_pred -----CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCC-EEEEEE
Confidence 34566777777899999965 57899999999999999999876 566777 799999999997 455 588999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 680 ~D~~iki 686 (793)
T PLN00181 680 TDNTLKL 686 (793)
T ss_pred CCCEEEE
Confidence 9999985
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.2e-18 Score=174.40 Aligned_cols=151 Identities=16% Similarity=0.298 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.|-.|+| ||+++++|+.||-|.|||..+|+....++ +.-|..+|.|++|+. +...++||+.||.|++|.++
T Consensus 216 ~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEe
Confidence 56677999 99999999999999999999988765433 224788999999997 67899999999999999999
Q ss_pred CCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 514 HIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+ ..|++.|. |...|+++.|+.++..+.++|.|.++++.-+.+|+.+++|. ||++.|+.+.|.++|.+
T Consensus 294 t----------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 294 T----------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHH 362 (508)
T ss_pred c----------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCe
Confidence 9 56888887 44569999999999999999999999999999999999999 89999999999999997
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+.++|.||+||.
T Consensus 363 -iisaSsDgtvkv 374 (508)
T KOG0275|consen 363 -IISASSDGTVKV 374 (508)
T ss_pred -EEEecCCccEEE
Confidence 679999999985
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=7.4e-17 Score=165.78 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=134.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC--------------CCEEEEEECCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY--------------PSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~--------------~~~LaSgS~Dg 505 (606)
|+.++.+- ||.++|+++.|.+|++|-..++.+...+. +|.-+|-+++|.|.. +..+.++|.|+
T Consensus 238 vr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 238 VRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 77778887 99999999999999999999987766444 888899999997631 24799999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
+||+||+.+ ..++.++.+|.. |.+++|+|.|++++|+.+|+++++||++++++..+++ +|..-|+++.
T Consensus 315 tIk~wdv~t----------g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lD 383 (406)
T KOG0295|consen 315 TIKIWDVST----------GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLD 383 (406)
T ss_pred eEEEEeccC----------CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEe
Confidence 999999999 468888887654 9999999999999999999999999999999999999 8999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+.+.++ ++|||-|++++.
T Consensus 384 fh~~~p~-VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 384 FHKTAPY-VVTGSVDQTVKV 402 (406)
T ss_pred cCCCCce-EEeccccceeee
Confidence 9999995 889999999875
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=155.75 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=129.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|.. +|+.+++||.||++||||++.-.+.+.+ .|..+|.++..+| +..-|++|..+|.|++||+....-..
T Consensus 86 VtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~---~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 86 VTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY---QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred eEEEEEee-cCeEEEecCCCceEEEEeccCcccchhc---cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcccc
Confidence 78899998 9999999999999999999985554433 6779999999999 55779999999999999998641100
Q ss_pred ---------------------------------------ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEE
Q 035500 520 ---------------------------------------ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVA 559 (606)
Q Consensus 520 ---------------------------------------~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~ 559 (606)
.......|+..++.|.. +..+.++|+++++|++|.|.+++
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 00011235556664444 88888999999999999999999
Q ss_pred EEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 560 LYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 560 IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||...+. +....++ +|...++..+|+-+|.| ++|||.|+++|.
T Consensus 241 iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~Y-lvTassd~~~rl 284 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLT-GHQRWVWDCAFSADGEY-LVTASSDHTARL 284 (311)
T ss_pred EEecCCceeeEEEee-cCCceEEeeeeccCccE-EEecCCCCceee
Confidence 9999987 5566777 89999999999999997 789999999874
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=8.1e-17 Score=179.44 Aligned_cols=155 Identities=15% Similarity=0.261 Sum_probs=136.2
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
..|+|. |+.++||| .+-++++||+|-+|+||+..+.+++.++ .||.+.|..+.|++. -.+++|+|+|.||+|
T Consensus 48 deHdGp----VRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL--~GHlDYVRt~~FHhe-yPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 48 DEHDGP----VRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTL--LGHLDYVRTVFFHHE-YPWILSASDDQTIRI 119 (1202)
T ss_pred hccCCc----cceeeecC-CCCeEEecCCccEEEEEecccceehhhh--ccccceeEEeeccCC-CceEEEccCCCeEEE
Confidence 347897 99999999 7779999999999999999999987655 499999999999984 468999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC-----c----------------
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE-----K---------------- 567 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-----k---------------- 567 (606)
|+..+ +.++..+.+|.- |.|.+|||...+++|+|-|.+|++||+..- .
T Consensus 120 WNwqs----------r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 120 WNWQS----------RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred EeccC----------CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 99998 679999997755 999999999999999999999999998721 0
Q ss_pred -------ee-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 -------PL-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 -------~v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+ +.++ ||...|+-++|+|.-+ ++++|+.|+.|+|
T Consensus 190 Lfg~~DaVVK~VLE-GHDRGVNwaAfhpTlp-liVSG~DDRqVKl 232 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLE-GHDRGVNWAAFHPTLP-LIVSGADDRQVKL 232 (1202)
T ss_pred hcCCcCeeeeeeec-ccccccceEEecCCcc-eEEecCCcceeeE
Confidence 01 3445 8999999999999998 7999999999986
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.2e-17 Score=174.23 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=132.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.|.+++|+|.|.+.+|+++.|++|+||.+.+..+..+++ ||...|.++.+.+.+ -.+++||++|.+||+||.++
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~--gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--- 216 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE--GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--- 216 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee--ccccCcceEEeccCCCcceEEecCCCceEEEeecch---
Confidence 488999999999999999999999999998877777666 999999999998732 23899999999999999999
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.|++++.+|.. |..+.|||.=.+++|||.||+++||...+=+...++.. --++|+||+-.+.+.. ++.|
T Consensus 217 -------k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~-i~vG 287 (794)
T KOG0276|consen 217 -------KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGK-IAVG 287 (794)
T ss_pred -------HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCe-EEEe
Confidence 789999997755 99999999999999999999999999988777777764 4689999999988874 7788
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
...|.|..
T Consensus 288 ~Deg~i~v 295 (794)
T KOG0276|consen 288 FDEGSVTV 295 (794)
T ss_pred ccCCcEEE
Confidence 87776643
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.7e-16 Score=168.14 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=133.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.|+|++...+++|++|+.+++||+.+... .....+|++.|.+.+|+|.++.+++|||.||+|++||.+..
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~---- 186 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL---- 186 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC----
Confidence 667789999999999999999999999998775 34556999999999999988889999999999999999983
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.|..+|.+|.+-|.|.++|++|. +.|++||+-+|.. +..+. .|...|+|+++..++.. |.+||-
T Consensus 187 -----~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~r-LlS~sL 258 (487)
T KOG0310|consen 187 -----TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTR-LLSGSL 258 (487)
T ss_pred -----CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh-cccceEEEEEeecCCce-Eeeccc
Confidence 257889999999999999999999999987 6899999996644 44554 49999999999998875 789999
Q ss_pred CCeEEEc
Q 035500 599 TTMSRCG 605 (606)
Q Consensus 599 DgtIRc~ 605 (606)
|+.|+..
T Consensus 259 D~~VKVf 265 (487)
T KOG0310|consen 259 DRHVKVF 265 (487)
T ss_pred ccceEEE
Confidence 9999863
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.71 E-value=6.5e-17 Score=165.77 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=132.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+++|+. .-|+.+++.|++|+-||++..+.++.+ +||-+.|++++.+|. -+.|+|||.|.++++||+++
T Consensus 196 vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkvIR~Y--hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRt----- 266 (460)
T KOG0285|consen 196 VRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKVIRHY--HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRT----- 266 (460)
T ss_pred eeeeeeccc-CceEEEecCCCeeEEEechhhhhHHHh--ccccceeEEEecccc-ceeEEecCCcceEEEeeecc-----
Confidence 788999984 449999999999999999999988855 499999999999994 57899999999999999999
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.++.++.+ ..+|.+|.+.|.+..++|||.|++|++||++.|+...++. .|...|.+++.+|... +||++|.
T Consensus 267 -----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~-~fASas~ 339 (460)
T KOG0285|consen 267 -----RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKEN-LFASASP 339 (460)
T ss_pred -----cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchh-hhhccCC
Confidence 678889985 5779999999999999999999999999999999999999 5999999999999865 7999998
Q ss_pred CCe
Q 035500 599 TTM 601 (606)
Q Consensus 599 Dgt 601 (606)
|.+
T Consensus 340 dni 342 (460)
T KOG0285|consen 340 DNI 342 (460)
T ss_pred ccc
Confidence 864
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=5.8e-17 Score=168.56 Aligned_cols=161 Identities=16% Similarity=0.241 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK- 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~- 518 (606)
|..+.||| |.+++++++.|..+++||+.+|.....++. +|...+.+.+|.| ++..+++||.|++|..||.......
T Consensus 272 V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~-~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~ 348 (519)
T KOG0293|consen 272 VSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPS-GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGN 348 (519)
T ss_pred eEEEEECC-CCCeEEecCchHheeeccCCcchhhhhccc-CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhc
Confidence 66788999 889999999999999999999999887753 5778899999999 6678999999999999998764110
Q ss_pred ---cc-----cc--------------------------------cCCcce------------------------------
Q 035500 519 ---VA-----DA--------------------------------RGNSSV------------------------------ 528 (606)
Q Consensus 519 ---~~-----~l--------------------------------~~~~~i------------------------------ 528 (606)
+. .+ ....++
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 00 00 000011
Q ss_pred --EEeecCCC---eEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 529 --ATYYDFEQ---LTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 529 --~t~~~~~~---V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
+.+.++.+ +-.-+|-- +..+++|||.|++|+||+-++|+++.++. ||...|++|+|+|..++++|+||.||+|
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 11122211 11222322 23689999999999999999999999999 8999999999999999999999999999
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
|+
T Consensus 508 RI 509 (519)
T KOG0293|consen 508 RI 509 (519)
T ss_pred EE
Confidence 96
No 46
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.8e-17 Score=182.91 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..+.|+..+.++|||++..|.|.+||+.. .+.+. .+..|...|+++.|++..+.+|+|||.||+||+||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~--~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-- 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT--VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-- 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhh--HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec--
Confidence 445678887889999999999999999986 23333 34589999999999998899999999999999999998
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNST-DDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+....++.+ ...|.+|+|+|. ++.|+++.+.|.+.+||+|.. +....+. +|.++|.++.|+|++.+ +
T Consensus 166 --------~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~-l 235 (839)
T KOG0269|consen 166 --------KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREW-L 235 (839)
T ss_pred --------ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCce-e
Confidence 344555655 455999999997 579999999999999999965 4567777 89999999999998775 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
||||.|++|++
T Consensus 236 ATGGRDK~vki 246 (839)
T KOG0269|consen 236 ATGGRDKMVKI 246 (839)
T ss_pred eecCCCccEEE
Confidence 99999999985
No 47
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=7.8e-17 Score=166.22 Aligned_cols=154 Identities=17% Similarity=0.353 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|-.++|||...+.+|+||.||+|+|||++.+.....+....|.+-|.-|.|+... .+|+||++||+++|||++.-+.
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~-- 336 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS-- 336 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC--
Confidence 6788999999999999999999999999998555555556999999999999744 4999999999999999998543
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--------e-------EEEcCCC--CCCe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--------L-------QLFTDMH--REPI 580 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--------v-------~~l~~gH--~~~I 580 (606)
..|+.+|+ |+.+|++|.|||.. ..|+++|.|.+|.|||+....- . ..+-.-| +..|
T Consensus 337 -----~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 337 -----GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred -----CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 57899998 56779999999986 6899999999999999985321 0 1111125 4568
Q ss_pred EEEEEeCCCCeEEEEEeCCCe
Q 035500 581 NVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..+.|+++-+-++++.+.||.
T Consensus 412 KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 412 KEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhheeccCCCCeEEEecccce
Confidence 899999998888999998884
No 48
>PTZ00421 coronin; Provisional
Probab=99.71 E-value=1e-15 Score=170.38 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=121.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|..++++++|+.||+|+|||+++++....+. +|...|.+++|+| ++.+|++|+.|++|++||++++
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg---- 200 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG---- 200 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC----
Confidence 88999999556899999999999999999988776554 8999999999999 6789999999999999999983
Q ss_pred ccccCCcceEEeecCCC--eEEEEEccCCCEEEEEe----CCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASG----YSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs----~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
..+.++..|.. +..+.|++++..++++| .|+.|++||+++.. ++......+...+....|+|++..+
T Consensus 201 ------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 201 ------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred ------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 35566665432 45778999888777665 47899999999754 4444442234566677889999865
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|..|+.||+
T Consensus 275 ~lggkgDg~Iri 286 (493)
T PTZ00421 275 YIGSKGEGNIRC 286 (493)
T ss_pred EEEEeCCCeEEE
Confidence 555557999986
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2.2e-16 Score=162.28 Aligned_cols=149 Identities=12% Similarity=0.092 Sum_probs=133.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|-| .|+++++++.|.+|+.|+..+|-++.++. +|..-|.-++.+. ++.+++|||.|.++++|-+.+
T Consensus 196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t----- 266 (406)
T KOG0295|consen 196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT----- 266 (406)
T ss_pred eeeEEEEe-cCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-----
Confidence 77889999 78999999999999999999999999877 9999999999885 778999999999999999988
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccC----------C-----CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNST----------D-----DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~----------g-----~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+.+...++ |..+|.+++|-|. + ..+++++.|++|++||+.++.++.++. ||.+.|..+
T Consensus 267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~ 340 (406)
T KOG0295|consen 267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGV 340 (406)
T ss_pred -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeee
Confidence 44555555 4567888888763 2 489999999999999999999999999 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+|.|+| ++++..|+++||
T Consensus 341 af~p~Gky-i~ScaDDktlrv 360 (406)
T KOG0295|consen 341 AFSPGGKY-ILSCADDKTLRV 360 (406)
T ss_pred EEcCCCeE-EEEEecCCcEEE
Confidence 99999997 779999999997
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.70 E-value=1.6e-15 Score=149.10 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++|+..+++...... +|...+..+.|.| ++..+++++.||.|++||+...
T Consensus 12 i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~---- 83 (289)
T cd00200 12 VTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETG---- 83 (289)
T ss_pred EEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEe--cCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcc----
Confidence 88999999 88999999999999999999887655544 8888999999998 4578999999999999999873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+..+ ..+.++.|+|++.++++++.|+.+.+||+++++....+. +|...|++++|+|++. ++++++.
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~ 155 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGT-FVASSSQ 155 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCC-EEEEEcC
Confidence 344555544 479999999998899999989999999999999888888 7999999999999976 5777777
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 156 ~~~i~i 161 (289)
T cd00200 156 DGTIKL 161 (289)
T ss_pred CCcEEE
Confidence 888764
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.7e-17 Score=180.06 Aligned_cols=151 Identities=13% Similarity=0.225 Sum_probs=138.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.||..++||| ..-++.++--.|.|++||.+-+.++..|. .|.++|.+++|+| ...+++|||+|-.|++|+...
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFd--eHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~--- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT--- 82 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhh--ccCCccceeeecC-CCCeEEecCCccEEEEEeccc---
Confidence 4588899999 55599999999999999999998888665 9999999999999 567999999999999999998
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.++.++.+| +-|..+.||+.-.+++|+|+|.+|+||+..+++++..+. ||...|.|..|+|... +++++
T Consensus 83 -------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSa 153 (1202)
T KOG0292|consen 83 -------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSA 153 (1202)
T ss_pred -------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEe
Confidence 6788888876 559999999999999999999999999999999999999 8999999999999887 69999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|-|++||.
T Consensus 154 SLDQTVRV 161 (1202)
T KOG0292|consen 154 SLDQTVRV 161 (1202)
T ss_pred cccceEEE
Confidence 99999996
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.70 E-value=9.9e-16 Score=150.51 Aligned_cols=149 Identities=17% Similarity=0.254 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| ++.++++++.||.|++||..+++....+. .|...+.+++|+| ++..+++++.|+.|++||++..
T Consensus 138 i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~---- 209 (289)
T cd00200 138 VNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG---- 209 (289)
T ss_pred EEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECC-CcCEEEEecCCCcEEEEECCCC----
Confidence 78899999 68899888889999999999888777665 8888999999998 5578888999999999999873
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+ .+..++.+++|+|++.++++++.|+.+++||+++++....+. +|...|.+++|+|++. .+++++.
T Consensus 210 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~ 281 (289)
T cd00200 210 ------KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGK-RLASGSA 281 (289)
T ss_pred ------ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCC-EEEEecC
Confidence 345556 345579999999998899998889999999999999988888 7999999999999987 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.++.
T Consensus 282 d~~i~i 287 (289)
T cd00200 282 DGTIRI 287 (289)
T ss_pred CCeEEe
Confidence 998875
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=161.57 Aligned_cols=153 Identities=21% Similarity=0.322 Sum_probs=129.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------------C------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------------G------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------------g------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
+++-+|+| ||.++|+|+.|-.|+|+|++. | ..++ .+..|...|.++.|+| ....|+||
T Consensus 115 cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHP-re~ILiS~ 190 (430)
T KOG0640|consen 115 CRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHP-RETILISG 190 (430)
T ss_pred eeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecc-hhheEEec
Confidence 67889999 999999999999999999761 1 1122 2458999999999999 66899999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE--EcCCCCCC
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL--FTDMHREP 579 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~--l~~gH~~~ 579 (606)
|.|++||+||+.+... +...+.++.-.+|.+++|||.|++++.|.+-.++++||+++-++... -..+|++.
T Consensus 191 srD~tvKlFDfsK~sa-------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSA-------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred cCCCeEEEEecccHHH-------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999988432 34455666778899999999999999999999999999999876332 22369999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++|.+++.+. +.+|||.||-||.
T Consensus 264 i~~V~Ys~t~~-lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 264 ITQVRYSSTGS-LYVTASKDGAIKL 287 (430)
T ss_pred eeEEEecCCcc-EEEEeccCCcEEe
Confidence 99999999998 7999999999986
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.70 E-value=2.4e-16 Score=162.83 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=128.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-----------------------CceEEEEeccCCCCCEEEEEEeeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-----------------------GNVACYIPSIGGTNSVLGLCWLKKYPS 496 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-----------------------g~~v~~~~~~gH~~~V~~L~fsp~~~~ 496 (606)
|-++...+ ++..+++|+.|.+++||+.++ +...+...+.||+.+|.++.|++ ..
T Consensus 196 V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~ 272 (423)
T KOG0313|consen 196 VDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--AT 272 (423)
T ss_pred eeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CC
Confidence 66788888 999999999999999999321 11112333569999999999996 47
Q ss_pred EEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--e-eEEEc
Q 035500 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--P-LQLFT 573 (606)
Q Consensus 497 ~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~-v~~l~ 573 (606)
.++|+|.|.+|+.||+..+ ..+.++....++++|+.+|...++++||.|..+++||.|++. . .+.+.
T Consensus 273 v~yS~SwDHTIk~WDletg----------~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETG----------GLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred ceEeecccceEEEEEeecc----------cceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 8999999999999999994 456677788889999999999999999999999999999763 2 45666
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||++.|.++.|+|...++|++||.|++++.
T Consensus 343 -gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 343 -GHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred -cchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 899999999999999999999999999984
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.70 E-value=1.3e-15 Score=179.28 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=128.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.++.++++|+.||+|++||+.++.....+. . ...|.++.|++.++..+++|+.||+|++||++..
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~---- 650 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP---- 650 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----
Confidence 88999998788999999999999999999988877664 3 3579999998767889999999999999999874
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE------KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~------k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
..++.++.+ ...|.+++|. ++..++++|.|++|++||++.+ +++..+. +|...+++++|+|++. +
T Consensus 651 -----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~-~ 722 (793)
T PLN00181 651 -----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDG-Y 722 (793)
T ss_pred -----CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCC-E
Confidence 224445554 4679999997 6789999999999999999853 5678888 8999999999999988 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|+.|++
T Consensus 723 lasgs~D~~v~i 734 (793)
T PLN00181 723 IATGSETNEVFV 734 (793)
T ss_pred EEEEeCCCEEEE
Confidence 899999999875
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.70 E-value=2.6e-16 Score=158.56 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=126.5
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.+|+|+ |..+.|+| +|..+|+|+.|..|.+|+.- +.+.......+|.++|..+.|.+ +++.++|+|.|++++.
T Consensus 44 ~gh~ge----I~~~~F~P-~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 44 PGHKGE----IYTIKFHP-DGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred CCCcce----EEEEEECC-CCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEE
Confidence 345687 88999999 99999999999999999965 44444555669999999999998 6789999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
||++++ +.++.++.|.. |++++-..-| .++.||+.|+++++||+|+..++++++ .+-.++++.|+.
T Consensus 117 wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d 184 (338)
T KOG0265|consen 117 WDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKD 184 (338)
T ss_pred Eecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecc
Confidence 999994 46777776666 7777633335 488899999999999999999998887 367899999988
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
++.. +.+|+-|+.|+
T Consensus 185 ~s~q-v~sggIdn~ik 199 (338)
T KOG0265|consen 185 TSDQ-VISGGIDNDIK 199 (338)
T ss_pred cccc-eeeccccCcee
Confidence 8775 55777776655
No 57
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.3e-16 Score=175.51 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=128.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.... +|.++||||.|.+|++|-++.+. ....-...||...|.+++++..+...|+|+|.|+++++|++...+.
T Consensus 368 vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 368 VLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 56677333 56799999999999999874332 2223345699999999999887888999999999999999987322
Q ss_pred CcccccCCcceE----Ee-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVA----TY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~----t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.-. ..+. +. -|...|++|+++|.+.++||||.|++.+||++.......++. ||+..|++|.|+|.++ +
T Consensus 447 ~~~-----~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq-~ 519 (775)
T KOG0319|consen 447 TAF-----PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQ-L 519 (775)
T ss_pred ccc-----cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccc-e
Confidence 111 1111 11 255669999999999999999999999999999999999999 8999999999999987 7
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+||+|.|+|||+
T Consensus 520 laT~SgD~TvKI 531 (775)
T KOG0319|consen 520 LATCSGDKTVKI 531 (775)
T ss_pred eEeccCCceEEE
Confidence 999999999986
No 58
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.6e-16 Score=149.88 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=123.0
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE---EEEeccCCCCCEEEEEEe--------------
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA---CYIPSIGGTNSVLGLCWL-------------- 491 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v---~~~~~~gH~~~V~~L~fs-------------- 491 (606)
..||.|. +.|.+|+| +|.++|+|+.|.+|++.-.+...+. ..+++.-|.+.|..++|.
T Consensus 85 ~khhkgs----iyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 85 NKHHKGS----IYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred ccccCcc----EEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 4456675 88999999 9999999999999999654322111 112222344444444442
Q ss_pred -------------------------------eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-------
Q 035500 492 -------------------------------KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD------- 533 (606)
Q Consensus 492 -------------------------------p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~------- 533 (606)
.-++-+++|||.|.+|++||++- ..++.++..
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv----------~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV----------NSCVNTLDNDFHDGGL 229 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec----------cceeeeccCcccCCCc
Confidence 01245799999999999999998 345555541
Q ss_pred -CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 -FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 -~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+.|.+|+..|.|.++++|..|....+||+|.+++++.+. +|+..|.++.|+|.-. .+.|||.|..||.
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~-yllt~syd~~ikl 299 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAH-YLLTCSYDMKIKL 299 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCce-EEEEecccceEEE
Confidence 1459999999999999999999999999999999999999 8999999999999766 4789999999885
No 59
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=7.8e-17 Score=178.01 Aligned_cols=146 Identities=14% Similarity=0.288 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||+..+++|++||.||+|++||++..+...++. +....|..++|+|..+.+|+++.+.|.+++||++..
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---- 209 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR--SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---- 209 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeeccccccccc--ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----
Confidence 78899999999999999999999999999887776654 678899999999988999999999999999999985
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..+...+. |.++|.++.|||++.++||||.|++|+|||...+++ ..++. ...+|..|+|-|..++.||++
T Consensus 210 -----~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 210 -----DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred -----hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhh
Confidence 34555555 568899999999999999999999999999987655 44444 467899999999999999988
Q ss_pred eC
Q 035500 597 HL 598 (606)
Q Consensus 597 S~ 598 (606)
+.
T Consensus 283 sm 284 (839)
T KOG0269|consen 283 SM 284 (839)
T ss_pred hc
Confidence 75
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.69 E-value=7.3e-17 Score=164.75 Aligned_cols=144 Identities=13% Similarity=0.195 Sum_probs=121.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|. ...+++||.|.+|+|||+++|+++.++ .+|..+|..+.|+. ++++|+|.|.+|.+||+..+..
T Consensus 240 VLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl--ihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-- 309 (499)
T KOG0281|consen 240 VLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL--IHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-- 309 (499)
T ss_pred EEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--hhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH--
Confidence 8889994 479999999999999999999998865 49999999999985 5899999999999999988431
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+.+.+| .+|+.|.|. +++++|+|.|.+|++|++.+++.++++. ||+..|-|+.+. ++ ++++||.
T Consensus 310 -----it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr--~r-lvVSGSS 378 (499)
T KOG0281|consen 310 -----ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSS 378 (499)
T ss_pred -----HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc--Ce-EEEecCC
Confidence 1223344444 559999885 5699999999999999999999999999 899999999884 44 7899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||.
T Consensus 379 DntIRl 384 (499)
T KOG0281|consen 379 DNTIRL 384 (499)
T ss_pred CceEEE
Confidence 999985
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=4.7e-16 Score=154.25 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=121.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++.+++|+. +|..+|+|+.|++++||+++.++........+|.+.|-.++|+|..+..+++++.|.+|++||++.++
T Consensus 22 ~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k-- 98 (313)
T KOG1407|consen 22 KVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK-- 98 (313)
T ss_pred cceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc--
Confidence 378899999 99999999999999999999887766666779999999999999999999999999999999999853
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--------------------------------
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-------------------------------- 566 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-------------------------------- 566 (606)
|+........=.-+.|+|+|++++.++.|..|.+.|.|+-
T Consensus 99 --------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 99 --------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred --------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 4444443333334556666666666666666666666543
Q ss_pred ---------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 567 ---------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 567 ---------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++++.++ +|.....||+|+|+|++ ||+||.|..+-
T Consensus 171 v~ILsypsLkpv~si~-AH~snCicI~f~p~Gry-fA~GsADAlvS 214 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRY-FATGSADALVS 214 (313)
T ss_pred EEEEeccccccccccc-cCCcceEEEEECCCCce-Eeeccccceee
Confidence 4455566 79999999999999997 99999997663
No 62
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=3.1e-16 Score=164.65 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=137.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+....+.||+||.|.+|++||+.+|++..++. .|.+.|.++.|+|..+..|++||.|++|.+.|.+..
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~---- 319 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP---- 319 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEeccccceEEeeeccCc----
Confidence 56778888788999999999999999999999998776 788999999999999999999999999999999963
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...-..++..+.|-.++|+|.. ..|+++.+||+|+-+|+|+. +++.+++ +|.+.|.++++++.-+.+++|+|
T Consensus 320 -----~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 320 -----SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred -----cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeecc
Confidence 2334567778889999999987 57888899999999999975 8999999 89999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 394 ~d~~Vkl 400 (463)
T KOG0270|consen 394 TDKVVKL 400 (463)
T ss_pred ccceEEE
Confidence 9999874
No 63
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=5.9e-16 Score=155.53 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-------EE------EEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-------AC------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-------v~------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
|.++.+.|..|+++++|+.||.|.|||++.... .. .-.-.+|+-.|..+.|.|.+..++.|+|.|.+
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 789999999999999999999999999875331 11 11124788899999999999999999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|+||.++ .+....|+..+.|.+-+|+|-. -++|+|..|-.|++-|+.+|..-+.+. ||.+.|.+|
T Consensus 126 lKVWDtnT----------lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV 194 (397)
T KOG4283|consen 126 LKVWDTNT----------LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAV 194 (397)
T ss_pred EEEeeccc----------ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEE
Confidence 99999998 4456677778889999999975 378888888999999999999999999 899999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|+|...|+++|||.||.||.
T Consensus 195 ~Wsp~~e~vLatgsaDg~irl 215 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRL 215 (397)
T ss_pred EeccCceeEEEecCCCceEEE
Confidence 999999999999999999984
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=6.9e-16 Score=151.13 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+.|+- +|+|.++++.|++||+|+...|.++.++. +|...|..++.+. +...|+||+.|..+.+||+.++
T Consensus 20 V~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs--ghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG---- 91 (307)
T KOG0316|consen 20 VRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS--GHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG---- 91 (307)
T ss_pred eEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec--CCCceeeeccccc-cccccccCCCCceEEEEEcccC----
Confidence 77888998 99999999999999999999999999887 7878899999886 5578999999999999999994
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.++.|.+| .+|+.|+|+..+..+++||.|.++++||.|+. +|++.+. .....|.++..+. +.+++|
T Consensus 92 ------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 92 ------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred ------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEecc---cEEEee
Confidence 467788866 55999999999999999999999999999964 6777777 3567777777753 346778
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.||++|.
T Consensus 162 S~DGtvRt 169 (307)
T KOG0316|consen 162 SVDGTVRT 169 (307)
T ss_pred ccCCcEEE
Confidence 88887775
No 65
>PTZ00420 coronin; Provisional
Probab=99.67 E-value=2.7e-15 Score=168.50 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=114.6
Q ss_pred EEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-
Q 035500 455 FGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD- 533 (606)
Q Consensus 455 SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~- 533 (606)
.|+.+|.|++|+......+..+ .+|.+.|.+++|+|.++.+|+|||.||+|++||+.......... ..++..+.+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L--~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--~~p~~~L~gH 124 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKL--KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--KDPQCILKGH 124 (568)
T ss_pred CCCceeEEEeeecCCCceEEEE--cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--ccceEEeecC
Confidence 3677899999998776655544 59999999999999767899999999999999998642111100 124455554
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 534 FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 534 ~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...|.+++|||++. +++++|.|++|++||+++++.+..+. |...|.+++|+|+|. ++++++.|++||+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrI 193 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHI 193 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEE
Confidence 46699999999986 56799999999999999998877776 567899999999998 5788889999885
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.67 E-value=7.8e-16 Score=159.02 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=128.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.|++ ...+.++|.|++|++||++++....... .....+++..+| ...+|++||.|..|++||.+.+..
T Consensus 263 Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g-- 334 (423)
T KOG0313|consen 263 VSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG-- 334 (423)
T ss_pred eeeEEEcC--CCceEeecccceEEEEEeecccceeeee---cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC--
Confidence 88899987 5689999999999999999999887654 245789999998 668999999999999999998632
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+....++.+| .-|.++.|+|.. ..|++|+.|+++++||+|+.+ ++..+. +|...|.++.|+..+ ++++|
T Consensus 335 -----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~~~~--~IvSG 406 (423)
T KOG0313|consen 335 -----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWNEGG--LIVSG 406 (423)
T ss_pred -----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEeccCCc--eEEec
Confidence 3445566655 459999999997 489999999999999999887 899999 899999999998654 58999
Q ss_pred eCCCeEEEc
Q 035500 597 HLTTMSRCG 605 (606)
Q Consensus 597 S~DgtIRc~ 605 (606)
|.|.++|+.
T Consensus 407 GaD~~l~i~ 415 (423)
T KOG0313|consen 407 GADNKLRIF 415 (423)
T ss_pred cCcceEEEe
Confidence 999999874
No 67
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.2e-17 Score=178.91 Aligned_cols=149 Identities=15% Similarity=0.263 Sum_probs=137.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+.|++ ...+|++|+.+|+|++||++.++.+.++ .||...+..+.|+| .+.++++||.|+.+++||++.
T Consensus 73 IeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk----- 143 (825)
T KOG0267|consen 73 IESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTL--TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK----- 143 (825)
T ss_pred ceeeecCc-chhhhcccccCCceeeeehhhhhhhhhh--hccccCcceeeecc-ceEEeccccccccceehhhhc-----
Confidence 78899999 8889999999999999999999988855 49999999999999 667889999999999999997
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|..++.+|.. |..+.|+|+|.++++|++|.+++|||...|+...+|+ +|.+.|.++.|+|..- ++++||.
T Consensus 144 -----~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~-Lla~Gs~ 216 (825)
T KOG0267|consen 144 -----KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEV-LLAPGSS 216 (825)
T ss_pred -----cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc-cccccccccccCchhh-hhccCCC
Confidence 568888887655 7889999999999999999999999999999999999 7999999999999864 8999999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|.
T Consensus 217 d~tv~f 222 (825)
T KOG0267|consen 217 DRTVRF 222 (825)
T ss_pred Cceeee
Confidence 999984
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=1.8e-15 Score=149.31 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+.|.. ..+.+.+++.|++||+||..++..+..+.+ ..+|.++..++ ++ .+++.+.-++|++||..+
T Consensus 146 Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaks----- 214 (334)
T KOG0278|consen 146 IRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEF---NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKS----- 214 (334)
T ss_pred ceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEec---CCCCcceeecc-CC-CEEEEecCceeEEecccc-----
Confidence 77888988 556777889999999999999999988865 34699999997 43 466777888999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
...++.++-...|.+.+.+|+...+++|+.|..++-||..+++.+-.+..+|-++|.|+.|+|+|. +.|+||.|
T Consensus 215 -----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED 288 (334)
T KOG0278|consen 215 -----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED 288 (334)
T ss_pred -----ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence 456777777788999999999999999999999999999999998887558999999999999998 79999999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
|+||.
T Consensus 289 GTirl 293 (334)
T KOG0278|consen 289 GTIRL 293 (334)
T ss_pred ceEEE
Confidence 99995
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.2e-15 Score=149.46 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++.+. |...+++|+.|+.|.+||+++|+..+.+. +|.+.|..++|+. ....++|||.|.++++||.++..
T Consensus 62 VlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s--- 134 (307)
T KOG0316|consen 62 VLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFR--GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS--- 134 (307)
T ss_pred eeeccccc-cccccccCCCCceEEEEEcccCeeeeecc--cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---
Confidence 66777777 78899999999999999999999998655 9999999999995 67899999999999999999853
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+|++.+.. .+.|.+|..+ +..+++||.||+++.||+|.|+.....- ..+|++++|+|++.. ...++.
T Consensus 135 -----~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-~La~~l 203 (307)
T KOG0316|consen 135 -----FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-SLASSL 203 (307)
T ss_pred -----CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-EEEeec
Confidence 468888874 6779999886 6789999999999999999998765554 369999999999996 567889
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|.
T Consensus 204 ~stlrL 209 (307)
T KOG0316|consen 204 DSTLRL 209 (307)
T ss_pred cceeee
Confidence 999985
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.66 E-value=5.1e-16 Score=164.39 Aligned_cols=161 Identities=14% Similarity=0.206 Sum_probs=134.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.|+.|+|.+.+.+++|+.|+.|+-||+++++.+..+. .|-+.|..+.|-+ ++..++|.|+|+++++|+.+.+....
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--RHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--hhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccch
Confidence 78999999666999999999999999999999887655 7889999999998 67899999999999999987652211
Q ss_pred ccc------------c------------------------CCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 520 ADA------------R------------------------GNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 520 ~~l------------~------------------------~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
... . ....-..|.+| +--..+.|+|+|.++++|+.||.+.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 000 0 00111233333 22578999999999999999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||.++.+.+..++ +|.+.+..+.|+|..+..+||||.||.|++
T Consensus 459 wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 459 WDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred eechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEe
Confidence 9999999999999 899999999999999999999999999985
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.65 E-value=5.2e-15 Score=158.02 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=129.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.|+.|+| ||.++|+++.||+|.+||=.+|+.+..+. ..+|++.|++++|+| ++..++|+|.|.++||||+.+
T Consensus 193 V~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~---- 266 (603)
T KOG0318|consen 193 VNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVST---- 266 (603)
T ss_pred eeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeec----
Confidence 88999999 99999999999999999999999988776 458999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecC----CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYDF----EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~----~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
...+.++... ++...+-|- ...+++.+-+|+|.+++...+.+++++. ||...|+++..+|++.+ +.
T Consensus 267 ------~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~-i~ 336 (603)
T KOG0318|consen 267 ------NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKT-IY 336 (603)
T ss_pred ------cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCE-EE
Confidence 4566666632 233333364 7899999999999999999999888888 89999999999999986 78
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
+||.||.|.
T Consensus 337 SgsyDG~I~ 345 (603)
T KOG0318|consen 337 SGSYDGHIN 345 (603)
T ss_pred eeccCceEE
Confidence 999999885
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.65 E-value=5.2e-16 Score=172.65 Aligned_cols=264 Identities=14% Similarity=0.102 Sum_probs=187.4
Q ss_pred hhhhhhccCCCCcccchhhHHHHHhhCCCceeccCCCCCcchHHHHHHHhhhcccccccccccccchhhhhhc-cccCCC
Q 035500 305 KLKKYISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDREIAKSVFARYFEHLPYKRKHKESVVSLLQK-REMGTS 383 (606)
Q Consensus 305 ~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ifS~~fe~Lp~~~k~k~svv~iL~~-rei~~~ 383 (606)
-|+ ...+|..|+.+.++|.. .++.+..+.++++.+.|+.+-|....+ -+.....+. ...+..
T Consensus 326 ~LR-~R~GHs~Pp~~irfy~~------------~g~~ilsa~~Drt~r~fs~~~e~~~~~----l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 326 LLR-SRGGHSAPPSCIRFYGS------------QGHFILSAKQDRTLRSFSVISESQSQE----LGQLHNKKRAKKVNVF 388 (910)
T ss_pred hee-eccCCCCCchheeeecc------------CcEEEEecccCcchhhhhhhHHHHhHh----hccccccccccccccc
Confidence 455 88899999999999976 355555556666666666544431100 000000000 000000
Q ss_pred CCccCCCCCCCC--CCc--chhhHHHHHhhhhccc--cccCCccce----eeeccc-ccccCceeeceeEEEEcCCCCCE
Q 035500 384 GNYQNSSKPKQP--NIH--RTQHFFSRSLSAAKLG--SSAWPLLHP----VSSFSH-IYKEGNKRVRPRQFEYNPSNPSL 452 (606)
Q Consensus 384 ~~~~~~~~~~p~--~~p--~~~~~y~ral~a~kl~--~~~~~~i~~----l~i~~~-~~~~G~~~~rV~slafsP~dg~~ 452 (606)
......+.|. +.. .++++|.....+.+.. ...|.+..+ ..+... ...++. -+++++.++ .|++
T Consensus 389 --~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~---~~~av~vs~-CGNF 462 (910)
T KOG1539|consen 389 --STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI---NATAVCVSF-CGNF 462 (910)
T ss_pred --chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc---ceEEEEEec-cCce
Confidence 0000111111 111 5677787776666554 344444322 111000 001222 278999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEE-eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 453 MAFGTLDGEVIVINHENGNVACYI-PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~-~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
.+.|++.|+|-+|++++|.....+ ....|+++|++++... ....++|++.+|-+++||+.+ +..+..+
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~----------k~l~~~l 531 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK----------KVLKKSL 531 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC----------cceeeee
Confidence 999999999999999999888766 2348999999999986 457899999999999999998 5567778
Q ss_pred ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 532 YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 532 ~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+-...+..+..|.....++.+.+|-.|+++|..+.+.++.|. ||.+.|++++|+|+|+| +++++.|++||+
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~DgrW-lisasmD~tIr~ 602 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDGRW-LISASMDSTIRT 602 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCCcE-EEEeecCCcEEE
Confidence 878889999999999999999999999999999999999999 89999999999999998 789999999996
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.64 E-value=4.8e-15 Score=165.83 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=130.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++++.. .++++++|+.|++++|||..+|.+...+. ||.+.|.++...+ ..+++||.|.+|++|++..
T Consensus 252 V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n----- 320 (537)
T KOG0274|consen 252 VWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN----- 320 (537)
T ss_pred ceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccC---ceEeeccCCceEEEEeccC-----
Confidence 78888975 68899999999999999999999999876 9999999998765 5788999999999999997
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++. |..+|.+|..+ ++++++|+.|++|++||+++++++..+. ||..+|+++.+.+. ..+.+||.
T Consensus 321 -----~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~--~~~~Sgs~ 390 (537)
T KOG0274|consen 321 -----GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE--NRLLSGSL 390 (537)
T ss_pred -----cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc--ceEEeeee
Confidence 56788888 77889999987 8999999999999999999999999999 89999999988765 46889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 391 D~~Ikv 396 (537)
T KOG0274|consen 391 DTTIKV 396 (537)
T ss_pred ccceEe
Confidence 999985
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.64 E-value=3e-15 Score=148.93 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----------------------------------------- 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----------------------------------------- 478 (606)
|.|++.+. +...+++|+.|.++++||+++|+.+..++.
T Consensus 55 vW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 55 VWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred EEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 88999998 889999999999999999999998765441
Q ss_pred ----------cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCC
Q 035500 479 ----------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDD 547 (606)
Q Consensus 479 ----------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~ 547 (606)
..+.+.++..-|.| .+..+++|..||.|..||++++. ..+.+-+ |...|++++++|+..
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~---------~~v~s~~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGK---------ELVDSDEEHSSKINDLQFSRDRT 203 (327)
T ss_pred hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCc---------eeeechhhhccccccccccCCcc
Confidence 12456677888888 56889999999999999999852 3344433 445699999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEc------------------------------------------------------
Q 035500 548 QFLASGYSKNVALYDINTEKPLQLFT------------------------------------------------------ 573 (606)
Q Consensus 548 ~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------------------------------------------ 573 (606)
+|+++|.|.+.++||.++-+.++++.
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 99999999999999998754432221
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.||=++|++++|+|+|+ .+++|++||.||.
T Consensus 284 kGHFGPINsvAfhPdGk-sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGK-SYSSGGEDGYVRL 313 (327)
T ss_pred cccccCcceeEECCCCc-ccccCCCCceEEE
Confidence 27999999999999999 4999999999996
No 75
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.64 E-value=6e-15 Score=157.52 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=115.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
++-..|+| .|.++|+|...|+|||||......+..-+
T Consensus 62 vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~Sv 140 (603)
T KOG0318|consen 62 VTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSV 140 (603)
T ss_pred eEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcc
Confidence 45556999 79999999999999999976533332222
Q ss_pred --ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC
Q 035500 478 --SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 478 --~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~ 554 (606)
..||...|.++.|-|..+-.++|||+|++|.+|+-.- .+--.+++.| .-|+++.|+|+|++|||+|.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECCCCCeEEEecC
Confidence 2345555666666565555666666666666664221 1112234444 44999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEc--CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQLFT--DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||++.+||=.+++.+..+. .+|++.|++++|+|++.. ++|+|.|.++|+
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KI 261 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKI 261 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEE
Confidence 9999999999999998887 369999999999999996 889999999985
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.63 E-value=5.5e-15 Score=149.17 Aligned_cols=146 Identities=18% Similarity=0.296 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|||+...++++||.||+||+|+++. |..+.. ....|.++|.+++|+. ++.++++|+.|+.+++||+.++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~--- 104 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG--- 104 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC---
Confidence 778999998888999999999999999986 455542 2357999999999996 6799999999999999999983
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDD--QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+....-.|..+|..++|-+... .++|||.|++|++||+|..+++.++.. .++++++..- .+ +++.+
T Consensus 105 -------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~Dv~--~p-m~vVa 172 (347)
T KOG0647|consen 105 -------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAADVL--YP-MAVVA 172 (347)
T ss_pred -------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeehhcc--Cc-eeEEE
Confidence 3344455778899999987765 899999999999999999999888873 6788887753 22 34444
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
..++-|
T Consensus 173 ta~r~i 178 (347)
T KOG0647|consen 173 TAERHI 178 (347)
T ss_pred ecCCcE
Confidence 444433
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.2e-15 Score=160.76 Aligned_cols=150 Identities=14% Similarity=0.196 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~~~ 517 (606)
|.-++|++ ++.++|+|+.|+.+.|||.........+. .|+.+|.+++|+|...++||+|+ .|++|++||..+
T Consensus 304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~--~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~--- 377 (484)
T KOG0305|consen 304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFT--EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT--- 377 (484)
T ss_pred eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEe--ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC---
Confidence 66789999 99999999999999999996655555444 99999999999999889999974 799999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+.......+|+++.|++..+-++++. .++.|.||+..+.+.+..+. ||+.+|..++++|+|.. +++
T Consensus 378 -------g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~-i~t 448 (484)
T KOG0305|consen 378 -------GARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGET-IVT 448 (484)
T ss_pred -------CcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-CCcceeEEEEECCCCCE-EEE
Confidence 45677777889999999999986565553 35789999999999999999 89999999999999996 789
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|.++|.
T Consensus 449 ~a~DETlrf 457 (484)
T KOG0305|consen 449 GAADETLRF 457 (484)
T ss_pred ecccCcEEe
Confidence 999999884
No 78
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.62 E-value=7.7e-16 Score=157.33 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=120.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++| |...+++|..|.+|+|||.++..+... +.||++.|.|+.|.. ..++|||.|.+|++||+++
T Consensus 200 VYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----- 266 (499)
T KOG0281|consen 200 VYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----- 266 (499)
T ss_pred eEEEEe---cchhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC-----
Confidence 667888 557999999999999999998777664 459999999999974 5899999999999999999
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..++.++-|| ..|..+.|+ .++++|+|.|.++++||+..... .+++. ||..+|+.+.|+ ++ ++++
T Consensus 267 -----ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~k-yIVs 335 (499)
T KOG0281|consen 267 -----GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--DK-YIVS 335 (499)
T ss_pred -----CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--cc-eEEE
Confidence 5678877776 559999987 78999999999999999987643 34555 899999999996 34 5899
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
+|+|.+||.
T Consensus 336 ASgDRTikv 344 (499)
T KOG0281|consen 336 ASGDRTIKV 344 (499)
T ss_pred ecCCceEEE
Confidence 999999985
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.5e-15 Score=163.84 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC-CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG-GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+++.|++ +|++||+|..+|.|.|||.++.+.+..+. + |...|-+++|.. ..+.+|+.|+.|..+|++....
T Consensus 220 vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~- 292 (484)
T KOG0305|consen 220 VTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH- 292 (484)
T ss_pred eEEEEECC-CCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchh-
Confidence 88999999 99999999999999999999888887765 5 999999999984 5899999999999999998432
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...++.+| ..|+.++|++++.++|+||.|+.+.|||....++...+. .|..+|.+++|+|....+||+|+
T Consensus 293 --------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 293 --------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred --------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcC
Confidence 22236655 559999999999999999999999999998888888888 69999999999999999999865
Q ss_pred C--CCeEE
Q 035500 598 L--TTMSR 603 (606)
Q Consensus 598 ~--DgtIR 603 (606)
+ |++|+
T Consensus 364 Gs~D~~i~ 371 (484)
T KOG0305|consen 364 GSADRCIK 371 (484)
T ss_pred CCcccEEE
Confidence 4 66665
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.2e-15 Score=163.21 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+++|| |+.++|.|=.|.+|+||-+.+-+.. +.+.||+=+|.++..+| ++..++|||.|++|++|-+.-+
T Consensus 511 vL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG---- 582 (888)
T KOG0306|consen 511 VLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG---- 582 (888)
T ss_pred EEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc----
Confidence 88999999 9999999999999999999876654 45669999999999999 6799999999999999999874
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.|-+++- |.++|.+|.|-|....|.|+|.|+.|+-||-..-+.++.+. +|...|++++..|+|.+ ++++|.
T Consensus 583 ------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~-vvs~sh 654 (888)
T KOG0306|consen 583 ------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSF-VVSSSH 654 (888)
T ss_pred ------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCe-EEeccC
Confidence 4555554 56779999999999999999999999999999999999999 89999999999999996 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|.+||+
T Consensus 655 D~sIRl 660 (888)
T KOG0306|consen 655 DKSIRL 660 (888)
T ss_pred CceeEe
Confidence 999997
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-14 Score=143.31 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=132.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++++.|+. +|++|.+++.|.++.||-.-+|+.+.++. ||+++|+++..+. ....+++||.|.++++||+.+++..-
T Consensus 13 lTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~--GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 13 LTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD--GHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred cceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec--CCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEE
Confidence 77888999 99999999999999999998899999877 9999999999886 66899999999999999999874310
Q ss_pred --------c-----------------------------------cccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC
Q 035500 520 --------A-----------------------------------DARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 520 --------~-----------------------------------~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D 555 (606)
. ......|..... ..+.++.+-|.|.++.+++|..|
T Consensus 89 ~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 89 TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 0 001233444444 34558899999999999999999
Q ss_pred CcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 KNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 g~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|.|.+||+++++. +..-+ .|...|+.++++|+..+ |+|||.|.+.+.
T Consensus 169 G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~-FiT~s~Dttakl 216 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTY-FITGSKDTTAKL 216 (327)
T ss_pred CcEEEEEcccCceeeechh-hhccccccccccCCcce-EEecccCcccee
Confidence 9999999999866 44445 69999999999999985 899999988764
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=151.21 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=131.1
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.++..+.++| +...+++++.|-.|+||.......... ...|..+|+.+..+| .+.+|+++|.||+..+.|++.+
T Consensus 262 kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g-- 335 (506)
T KOG0289|consen 262 KKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTS--SRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSG-- 335 (506)
T ss_pred eEEEEEEecc-chhheeecCCcceEEeeccccccCccc--cccccccceeeeecc-CCcEEEEecCCceEEEEEccCC--
Confidence 3578899999 888999999999999999876654443 348999999999999 6799999999999999999984
Q ss_pred CcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..+....+. -.+++.+|||||-+|++|..|+.|+|||+..+..+..|+ +|+++|..++|+-+|= .+|
T Consensus 336 --------~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY-~La 405 (506)
T KOG0289|consen 336 --------SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGY-WLA 405 (506)
T ss_pred --------cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCce-EEE
Confidence 344444443 338999999999999999999999999999999999999 7999999999998875 589
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++..|+.|+|
T Consensus 406 t~add~~V~l 415 (506)
T KOG0289|consen 406 TAADDGSVKL 415 (506)
T ss_pred EEecCCeEEE
Confidence 9999998887
No 83
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.59 E-value=7.9e-15 Score=154.58 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=126.8
Q ss_pred eceeEEEEcCCCC-CEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 438 VRPRQFEYNPSNP-SLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 438 ~rV~slafsP~dg-~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
-||.+++|||... +++|+|..-|+|-+||+.+ ...-..+.+.+|.++|.++.|+|.+...+++.|.||+|++-|++.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 3689999999666 8999999999999999952 222334456799999999999999999999999999999999986
Q ss_pred CCCCc-------ccc-------------------c---------CCcceEEee-cCCCeEEEEEccCC-CEEEEEeCCCc
Q 035500 515 IPPKV-------ADA-------------------R---------GNSSVATYY-DFEQLTSVHVNSTD-DQFLASGYSKN 557 (606)
Q Consensus 515 ~~~~~-------~~l-------------------~---------~~~~i~t~~-~~~~V~sV~~sp~g-~~LaSgs~Dg~ 557 (606)
..... ..+ . .+.....+. |+..|++|++||.. .++||+|.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 42100 000 0 000011111 34569999999997 58999999999
Q ss_pred EEEEECCCC--ce---eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 558 VALYDINTE--KP---LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 558 I~IWDlrt~--k~---v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
++|||+|.- +. +..+ .|+..|+++.|+|.+.. ++|.+.|..||+.
T Consensus 347 ~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGT-LLTTCQDNEIRVF 396 (498)
T ss_pred eeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCc-eEeeccCCceEEe
Confidence 999999953 32 3344 49999999999999998 8899999999863
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.59 E-value=2.2e-14 Score=142.44 Aligned_cols=146 Identities=12% Similarity=0.146 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
|-+++|+|..++.+++++.|.+|++||+.+++++....
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 66788999899999999999999999988877754332
Q ss_pred --------------------------------------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 478 --------------------------------------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 478 --------------------------------------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...|.....||.|+| .+++||+||.|..+-+||+..
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E----- 220 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE----- 220 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhH-----
Confidence 134888899999999 679999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
-.|++.+.. .-+|..++|+.+|+++|+||.|..|-|-++.+|..+..++ |.++-+.|+|+|... |||-+..
T Consensus 221 -----LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~-LLAyA~d 292 (313)
T KOG1407|consen 221 -----LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRP-LLAYACD 292 (313)
T ss_pred -----hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCc-eeeEEec
Confidence 457777774 6779999999999999999999999999999999999998 899999999999987 6666555
Q ss_pred C
Q 035500 599 T 599 (606)
Q Consensus 599 D 599 (606)
|
T Consensus 293 d 293 (313)
T KOG1407|consen 293 D 293 (313)
T ss_pred C
Confidence 5
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.59 E-value=1.7e-14 Score=164.98 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCC--------c--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENG--------N--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg--------~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+-+++.|| ++..+|||+ .||.++||+.+.- . .........|.+.|.|+.|+| ++.+||+||+|+.|
T Consensus 16 IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 16 IFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLV 93 (942)
T ss_pred EEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceE
Confidence 67899999 999999999 9999999996430 0 001112348999999999999 78999999999999
Q ss_pred EEEeCCCCCC--------CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 035500 508 RLFDLNHIPP--------KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 508 klWDl~~~~~--------~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
-+|+...... .......-+.+..+.+| ..|.++.|+|++.+++++|.|++|.||+.++.+.+..+. +|.+
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s 172 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQS 172 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-cccc
Confidence 9999873100 00011112355667655 559999999999999999999999999999999999999 8999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|-.+.|.|.|+| ||+-+.|++++.
T Consensus 173 ~VKGvs~DP~Gky-~ASqsdDrtikv 197 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY-FASQSDDRTLKV 197 (942)
T ss_pred cccceEECCccCe-eeeecCCceEEE
Confidence 9999999999997 899999999985
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.58 E-value=1.4e-14 Score=154.33 Aligned_cols=156 Identities=14% Similarity=0.233 Sum_probs=126.3
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE----------eccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI----------PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~----------~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+.+++++|+| .++.|++.+.....+|+|-......... ...||...+++.+|+|.+...|+|+|.||++
T Consensus 215 h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 215 HQINSLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred cccceeeecC-CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 4588999999 7888888888889999996543333222 2468999999999999988899999999999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCC-
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHRE- 578 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~- 578 (606)
++||++..+. ....+.+ .-++++++|+|+|++||+|..||.|.+||.+.. .+...+..+|..
T Consensus 294 RiWdv~~~k~---------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 294 RIWDVNNTKS---------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEEecCCchh---------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 9999998532 3333332 244899999999999999999999999998743 456666668987
Q ss_pred -CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 -PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 -~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++|+|+++|.+ |++-|.|.+.|.
T Consensus 365 ~~Itsi~FS~dg~~-LlSRg~D~tLKv 390 (641)
T KOG0772|consen 365 QDITSISFSYDGNY-LLSRGFDDTLKV 390 (641)
T ss_pred CceeEEEeccccch-hhhccCCCceee
Confidence 9999999999995 789999988764
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=2.6e-14 Score=159.89 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..+.||. + ++|.++|-|.|||+|++....++..| .|.+.|+|++|+|.++++|+|||.||.|+||++...
T Consensus 372 ILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---- 442 (712)
T KOG0283|consen 372 ILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---- 442 (712)
T ss_pred heeccccc-C-CeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEecccCCCcEeecccccceEEeecCcC----
Confidence 78889986 4 59999999999999999999999877 799999999999999999999999999999999872
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--------CCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--------MHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--------gH~~~I~sV~fsP~g~ 590 (606)
.+..+. -+.-|+++++.|+|+..+.|+.+|.+++|+++..+.+..+.. .|. .|+.+.|.|..+
T Consensus 443 -------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 443 -------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred -------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 344444 367799999999999999999999999999998776554431 133 799999999887
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
.-++..|.|..||+
T Consensus 515 ~~vLVTSnDSrIRI 528 (712)
T KOG0283|consen 515 DEVLVTSNDSRIRI 528 (712)
T ss_pred CeEEEecCCCceEE
Confidence 76777888999986
No 88
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.57 E-value=1.1e-13 Score=142.74 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|-+++.+| +.+++|||+.|-.-.+|++.+|.... .+.+|+..|+++.|+. ++.+||||..+|.|+||+..++.
T Consensus 67 vFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~--eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~--- 139 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAG--ELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGG--- 139 (399)
T ss_pred eEEEEeCC-CCceEEecCCCceEEEEEccCCccee--EecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCc---
Confidence 66889999 88999999999999999999999655 4559999999999996 78999999999999999999842
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....+. .-..+.=+.|||.+.++++|+.||.+-+|.+.++...+.+. ||..++++-.|.|+|+. ++++..
T Consensus 140 -------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr-~~tgy~ 210 (399)
T KOG0296|consen 140 -------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKR-ILTGYD 210 (399)
T ss_pred -------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCce-EEEEec
Confidence 222332 34457889999999999999999999999999988888898 89999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 211 dgti~~ 216 (399)
T KOG0296|consen 211 DGTIIV 216 (399)
T ss_pred CceEEE
Confidence 999985
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=4.5e-14 Score=153.96 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=128.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EE------EEecc-CCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--AC------YIPSI-GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~------~~~~~-gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
|.|+++-..+..++|+||.|+.|.+||++++.. +. .-.+. |++.+|++++-++ .+..+++||..+.+++|
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEe
Confidence 788899333888999999999999999998733 21 11223 8999999999997 56899999999999999
Q ss_pred eCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
|.++. ..+..+++| ..|..+-.+++|..++|+|.||+|++||++..+++.++. .|+..|+++.-+|+-
T Consensus 199 Dprt~----------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 199 DPRTC----------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSF 267 (735)
T ss_pred ccccc----------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCc
Confidence 99994 345566655 559999999999999999999999999999999999999 799999999999988
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
.+ +.+|+.||.|-+
T Consensus 268 ~~-vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 268 TH-VYSGGRDGNIYR 281 (735)
T ss_pred ce-EEecCCCCcEEe
Confidence 86 778888887643
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=6.4e-14 Score=148.81 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+|.+|+|.++.+++|||+||+||+||.++. ..+..+ .|..+|-.+.+.| ++.+++|+|.. .||+||+.++.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G~-- 228 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTGG-- 228 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCCc--
Confidence 8999999999999999999999999999875 333332 7888999999998 67889888754 79999999753
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+. ...|+..|+|+.+..++..++|||-|+.|++||+.+-+.+..+. -.++|.+++.+|++.. ++.|-
T Consensus 229 -------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t-~viGm 298 (487)
T KOG0310|consen 229 -------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQT-VVIGM 298 (487)
T ss_pred -------eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCce-EEEec
Confidence 2233 33478889999999999999999999999999988888888887 4899999999999885 77888
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.||.+-.
T Consensus 299 snGlv~~ 305 (487)
T KOG0310|consen 299 SNGLVSI 305 (487)
T ss_pred ccceeee
Confidence 8987754
No 91
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.6e-14 Score=142.32 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=129.3
Q ss_pred ccCceeeceeEEEE-cCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC-CEEEEEECCCeEEE
Q 035500 432 KEGNKRVRPRQFEY-NPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP-SKLVAGSDSGCVRL 509 (606)
Q Consensus 432 ~~G~~~~rV~slaf-sP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~-~~LaSgS~DgtIkl 509 (606)
|.|. |..++| ||.-|.+||++++||.|.||.-++|+-........|...|++++|.|... -.|+++|.||.|.+
T Consensus 55 h~GP----Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 55 HSGP----VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred CCCC----eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 3476 888889 78899999999999999999999887776666779999999999998653 45889999999999
Q ss_pred EeCCCCCCCcccccCCcceEE-eecCCCeEEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCc--eeEEE
Q 035500 510 FDLNHIPPKVADARGNSSVAT-YYDFEQLTSVHVNST---D-----------DQFLASGYSKNVALYDINTEK--PLQLF 572 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t-~~~~~~V~sV~~sp~---g-----------~~LaSgs~Dg~I~IWDlrt~k--~v~~l 572 (606)
.+++.... ....+. .-|.-.|++|+|.|. | ..|+|||.|+.|+||+...++ .-+.+
T Consensus 131 l~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 131 LTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred EEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 99987421 111112 224455999999987 3 469999999999999999863 34457
Q ss_pred cCCCCCCeEEEEEeCCC---CeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHS---PLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g---~~LLaTgS~DgtIRc 604 (606)
. +|++-|+.++|.|.- ...+|+||.||++-+
T Consensus 204 ~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 204 E-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred h-hcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 7 899999999999964 457899999998754
No 92
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.56 E-value=1.8e-14 Score=149.54 Aligned_cols=147 Identities=15% Similarity=0.175 Sum_probs=122.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-----EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-----YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-----~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|..++|+|.+.+.||+||.|.+|.||.+..+.... ...+.||...|--++|+|.-.+.|+|+|.|.+|.+|++.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 77899999999999999999999999987543321 3346699999999999998888999999999999999999
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~g~~LL 593 (606)
+ ..+.++.|.+.|.+++|+.+|.++++++.|+.|+|||.|+++.+.+-. +|.+. -..+-|-.++. ++
T Consensus 164 g----------eali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-i~ 231 (472)
T KOG0303|consen 164 G----------EALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-IF 231 (472)
T ss_pred C----------ceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-ee
Confidence 4 446667788889999999999999999999999999999999998886 68754 33455666666 44
Q ss_pred EEEeCC
Q 035500 594 LLLHLT 599 (606)
Q Consensus 594 aTgS~D 599 (606)
|.+..
T Consensus 232 -tTGfs 236 (472)
T KOG0303|consen 232 -TTGFS 236 (472)
T ss_pred -eeccc
Confidence 44443
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.4e-15 Score=149.47 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|+.|+. |...+|+|+.||.|+||.+++|.++..+. ..|...|+++.|+. ++..++|+|.|.++++.-+.+
T Consensus 266 Vlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS----- 337 (508)
T KOG0275|consen 266 VLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS----- 337 (508)
T ss_pred eEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEcc-CcchhhcccccceEEEecccc-----
Confidence 88999999 99999999999999999999999998775 48999999999998 567899999999999999988
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS 597 (606)
.++++.+++|.. |+...|.++|..++++|.||+|++|+..+.+++.+|+.+ ..-+|+++-.-|..+.-++.|.
T Consensus 338 -----GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 338 -----GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred -----chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 457888888766 999999999999999999999999999999998888732 4567888888887766666666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
...+|
T Consensus 413 rsntv 417 (508)
T KOG0275|consen 413 RSNTV 417 (508)
T ss_pred CCCeE
Confidence 55544
No 94
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.56 E-value=1e-13 Score=142.99 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=131.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc-
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV- 519 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~- 519 (606)
.=+.||| .+.++++|+.||.|.+|.+.++...+.+. ||..++++=.|.| ++.+++++..||+|++|+..++.+..
T Consensus 152 eWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 152 EWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMS--GHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHK 227 (399)
T ss_pred EEEEecc-cccEEEeecCCCcEEEEECCCcceeeEec--CCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEE
Confidence 3477999 89999999999999999999877777666 9999999999999 58999999999999999998752210
Q ss_pred -------------------------------------------cc--c-------------------------------c
Q 035500 520 -------------------------------------------AD--A-------------------------------R 523 (606)
Q Consensus 520 -------------------------------------------~~--l-------------------------------~ 523 (606)
.+ . .
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 00 0 0
Q ss_pred ---------CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 524 ---------GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 524 ---------~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....-..+.|..+|..+.|-+ ..++++++.+|+|+.||.|+|+...++. ||...|.+++++|+.+ +++
T Consensus 308 G~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~-~vv 384 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKR-LVV 384 (399)
T ss_pred ceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCc-EEE
Confidence 001112333556799999988 7899999999999999999999999999 8999999999999988 689
Q ss_pred EEeCCCeEEEc
Q 035500 595 LLHLTTMSRCG 605 (606)
Q Consensus 595 TgS~DgtIRc~ 605 (606)
|+|.|++.+.+
T Consensus 385 T~s~D~~a~VF 395 (399)
T KOG0296|consen 385 TVSDDNTALVF 395 (399)
T ss_pred EecCCCeEEEE
Confidence 99999998864
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=9.2e-14 Score=141.02 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.|+.|++ .|.++|+|..||.|-|||+.|......+. +|..+|.+++|++ ++++|+|+|.|..|++||+..+....
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls--aH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS--AHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh--ccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee
Confidence 66889999 99999999999999999999988776655 9999999999998 67999999999999999998864211
Q ss_pred c-----------------------cccCCcceEEee-------c---CCC----eEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 520 A-----------------------DARGNSSVATYY-------D---FEQ----LTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 520 ~-----------------------~l~~~~~i~t~~-------~---~~~----V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
. .+...+.+..+. . ... ..+..|.+.|+++++|...|.+.+||
T Consensus 102 rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 102 RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 0 000000111111 0 011 12234778899999999999999999
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+-+.+..++......|..+.|+-.|.. ++.-+.|++||.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ 222 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRT 222 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEE
Confidence 99999998888433378999999998885 778888999985
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.55 E-value=1.9e-14 Score=145.54 Aligned_cols=152 Identities=15% Similarity=0.267 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||| ...+|++|+.|++|++||.......+.++......+|.++.|+| .+..++.|.+-.++++||+++.
T Consensus 175 vn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~---- 248 (430)
T KOG0640|consen 175 VNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTY---- 248 (430)
T ss_pred ccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccce----
Confidence 78899999 77899999999999999987644433333334456799999999 6789999999999999999983
Q ss_pred ccccCCcceEE----eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CeEEEEEeCCCCeEEE
Q 035500 520 ADARGNSSVAT----YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE-PINVAKFSHHSPLCLL 594 (606)
Q Consensus 520 ~~l~~~~~i~t----~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~-~I~sV~fsP~g~~LLa 594 (606)
++... -+|...|++|.+++.+++.++||.||.|++||--+++++.++..+|.+ .|.+..|..++++ +.
T Consensus 249 ------QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-iL 321 (430)
T KOG0640|consen 249 ------QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-IL 321 (430)
T ss_pred ------eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-Ee
Confidence 23222 235577999999999999999999999999999999999999988864 7899999999997 55
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++|.|.+|+.
T Consensus 322 sSG~DS~vkL 331 (430)
T KOG0640|consen 322 SSGKDSTVKL 331 (430)
T ss_pred ecCCcceeee
Confidence 7788988863
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=1.9e-13 Score=143.47 Aligned_cols=150 Identities=12% Similarity=0.171 Sum_probs=126.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.+..+| .|.|+++++.||+.-+.|+++|.........+..-.+++.+|+| ++-+|.+|+.||.+++||+...
T Consensus 306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~---- 379 (506)
T KOG0289|consen 306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQ---- 379 (506)
T ss_pred ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCc----
Confidence 77889999 99999999999999999999999887655333344589999999 6789999999999999999984
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.-+..|.+| ++|..|+|+.+|-+++++.+|+.|++||+|..+..+++.......|.++.|.+.|.+ ++.+|.
T Consensus 380 ------~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~-L~~~g~ 452 (506)
T KOG0289|consen 380 ------TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY-LGIAGS 452 (506)
T ss_pred ------cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe-EEeecc
Confidence 345566654 669999999999999999999999999999998888887545557999999999997 555566
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|-.|
T Consensus 453 ~l~V 456 (506)
T KOG0289|consen 453 DLQV 456 (506)
T ss_pred eeEE
Confidence 6443
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=1.2e-13 Score=140.25 Aligned_cols=149 Identities=11% Similarity=0.190 Sum_probs=121.9
Q ss_pred cccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEE
Q 035500 431 YKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRL 509 (606)
Q Consensus 431 ~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIkl 509 (606)
.|.|. ++++|. ++.++|+||.|-+|+|||+++......+- .|.+.|+++.|.+.. .+.|+||++||.|.+
T Consensus 41 aH~~s----itavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 41 AHAGS----ITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccc----eeEEEe---cceeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 35565 788888 55799999999999999999887776554 899999999998632 237999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
|+... ...+.+++. ..+|+.++.||.+.+-++.|.|+.++.|++-+|+.-..++..|... .|.|+|.
T Consensus 112 w~~~~----------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at--~v~w~~~ 179 (362)
T KOG0294|consen 112 WRVGS----------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT--LVSWSPQ 179 (362)
T ss_pred EEcCC----------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce--eeEEcCC
Confidence 99998 456777874 5669999999999999999999999999999998877776544443 4999999
Q ss_pred CCeEEEEEeCCCe
Q 035500 589 SPLCLLLLHLTTM 601 (606)
Q Consensus 589 g~~LLaTgS~Dgt 601 (606)
|.+ |+.++.+++
T Consensus 180 Gd~-F~v~~~~~i 191 (362)
T KOG0294|consen 180 GDH-FVVSGRNKI 191 (362)
T ss_pred CCE-EEEEeccEE
Confidence 996 555555543
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.2e-13 Score=144.13 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=122.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..+.||+ +|.++|+|+.|.+.-||++..... .....+.||..+|..+.|+| +++++++|+.|..+.+||+.++.
T Consensus 227 VWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd-- 302 (519)
T KOG0293|consen 227 VWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD-- 302 (519)
T ss_pred EEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch--
Confidence 88999999 999999999999999999754333 22445669999999999999 66899999999999999999953
Q ss_pred cccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
....+.+ ...+.+++|.|+|..|++||.|+++..||+. |+.....+......|.+++..++|+++++.+
T Consensus 303 --------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 303 --------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred --------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 3444443 3568999999999999999999999999997 4445555533446799999999999976665
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
.|..||.
T Consensus 374 -~d~~i~l 380 (519)
T KOG0293|consen 374 -VDKKIRL 380 (519)
T ss_pred -cccceee
Confidence 6776664
No 100
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-14 Score=165.96 Aligned_cols=158 Identities=21% Similarity=0.329 Sum_probs=127.5
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
|.|. |+.+.|+|..++++|+|+.||.|.|||+.+-+.-.......-.+.|.+++|+......|+|++.+|.+-|||
T Consensus 115 h~G~----V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 115 HTGP----VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cCCc----eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 5575 889999998888999999999999999986322111111124578999999987788899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeecC---CCeEEEEEccCC-CEEEEEeCC---CcEEEEECCCC-ceeEEEcCCCCCCeEEE
Q 035500 512 LNHIPPKVADARGNSSVATYYDF---EQLTSVHVNSTD-DQFLASGYS---KNVALYDINTE-KPLQLFTDMHREPINVA 583 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g-~~LaSgs~D---g~I~IWDlrt~-k~v~~l~~gH~~~I~sV 583 (606)
++. ++++..+..+ ..+..++|||+. ..++++++| -.|.+||+|.. .++++++ +|...|.++
T Consensus 191 lr~----------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~Gilsl 259 (1049)
T KOG0307|consen 191 LRK----------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSL 259 (1049)
T ss_pred ccC----------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeee
Confidence 998 4456555543 338899999997 456666554 57999999964 5688887 799999999
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++.+..++++++.|+.|-|
T Consensus 260 sWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeE
Confidence 999999889999999999877
No 101
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=3.1e-13 Score=149.45 Aligned_cols=148 Identities=14% Similarity=0.256 Sum_probs=130.3
Q ss_pred eceeEEEEcCCCCCEEEEEeCC-CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD-GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D-GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
.++.+++|+. .|+++|.|+.. |++-||++++...+...+ ||-..+.+++++| ++..+++|++||.|||||...
T Consensus 308 ~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S-- 381 (893)
T KOG0291|consen 308 QKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS-- 381 (893)
T ss_pred ceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEECC-CCcEEEeccCCCcEEEEeccC--
Confidence 3478889998 89999999875 899999999877766544 9999999999999 678999999999999999998
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.-|+.+|..| ..|+.++|+..|+.++++|-||+|+.||+.+.+..++|..+..-...|++..|.|. ++.+
T Consensus 382 --------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~A 452 (893)
T KOG0291|consen 382 --------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCA 452 (893)
T ss_pred --------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEe
Confidence 5789999965 55999999999999999999999999999999999999865666778899999998 6778
Q ss_pred EeCCC
Q 035500 596 LHLTT 600 (606)
Q Consensus 596 gS~Dg 600 (606)
|+.|.
T Consensus 453 G~~d~ 457 (893)
T KOG0291|consen 453 GAQDS 457 (893)
T ss_pred eccce
Confidence 87774
No 102
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=1.2e-13 Score=138.88 Aligned_cols=152 Identities=13% Similarity=0.209 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEe---ccCCCCCEEEEEEee-CCCCEEEEEECCCeEEEEeCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIP---SIGGTNSVLGLCWLK-KYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~---~~gH~~~V~~L~fsp-~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.|+.|.| ++..+|+-. |..|.+|++..+.. +..+. ..+|....++-+|+| .+++.+++ ..|+++..||++
T Consensus 125 ~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R 201 (370)
T KOG1007|consen 125 KINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR 201 (370)
T ss_pred ceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEcc
Confidence 488999999 888888876 78899999987655 22222 124666788899999 45555555 458999999999
Q ss_pred CCCCCcccccCCcceEEee-cC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ....+. .| ..|.++.|+|..+ +++|+|+||.|+|||.|+ ..++.+++ +|...|++|.|+|..
T Consensus 202 T~~----------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 202 TMK----------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEH 270 (370)
T ss_pred chh----------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCcc
Confidence 853 222222 34 4499999999975 899999999999999995 56789999 899999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
..++.|||.|..|..
T Consensus 271 dqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNL 285 (370)
T ss_pred ceEEEecCCCceeEE
Confidence 999999999987753
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=9.5e-14 Score=151.47 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
+++.++++|.|-+|++|+...+. +..++ ..|++.|.+++....+..+++|||.|+.|.+||++.+......-....
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 77899999999999999998763 44443 489999999999444678999999999999999997633110000011
Q ss_pred ceEEe--ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 527 SVATY--YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 527 ~i~t~--~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+...+ .++.+|.+++.++.|..+++||..+.+++||.++++.+..+. ||+..|.++-.+++|.. +.+||.||+||.
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~-~ls~sSDgtIrl 239 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTR-LLSASSDGTIRL 239 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCe-EeecCCCceEEe
Confidence 22222 246779999999999999999999999999999999999999 89999999999999996 779999999985
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.51 E-value=3.4e-13 Score=136.37 Aligned_cols=159 Identities=15% Similarity=0.243 Sum_probs=124.5
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEE
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklW 510 (606)
++|. |.+++|+. +|..+++|+.|+++++||+.+++... + ..|.++|..+.|-+.. ...|+|||.|++||+|
T Consensus 71 ~~~P----vL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q~~~-v--~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 71 HDGP----VLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQVSQ-V--AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred cCCC----eEEEEEcc-CCceEEeeccCCceEEEEccCCCeee-e--eecccceeEEEEecCCCcceeEecccccceeec
Confidence 5565 88999998 99999999999999999999996553 3 3899999999997622 2378999999999999
Q ss_pred eCCCCCCCc-------------------------------------------ccc-------------------------
Q 035500 511 DLNHIPPKV-------------------------------------------ADA------------------------- 522 (606)
Q Consensus 511 Dl~~~~~~~-------------------------------------------~~l------------------------- 522 (606)
|.+...+.. +++
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 998753210 000
Q ss_pred -----cCC--cceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 523 -----RGN--SSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 523 -----~~~--~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
... ..-.+|+.| .+|++|+|||.-..|+|+|.||+..+||-.....+...+ .|..+|++.+|
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~f 301 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSF 301 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEe
Confidence 000 111233322 238899999999999999999999999999888888877 69999999999
Q ss_pred eCCCCeEEEEEeCC
Q 035500 586 SHHSPLCLLLLHLT 599 (606)
Q Consensus 586 sP~g~~LLaTgS~D 599 (606)
+.+|..+..+.|.|
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999766666766
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-13 Score=134.66 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEE-eeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCW-LKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~f-sp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
-|..|||++.|++||||..+.... .....+.||.++|+.++| +|..+.+|+|||.||.|-||.-..+. -.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~--------w~ 93 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR--------WT 93 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc--------hh
Confidence 678999999999999999986443 445567799999999999 67788999999999999999877641 11
Q ss_pred ceEEee-cCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCC---C---------
Q 035500 527 SVATYY-DFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHH---S--------- 589 (606)
Q Consensus 527 ~i~t~~-~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~---g--------- 589 (606)
....+. |...|++|+|.|.+ -.|+.++.||.|.+.+.+.. -....+..+|.-.|++++|.|. |
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 222333 45669999999985 58999999999999998864 2333444489999999999997 3
Q ss_pred -CeEEEEEeCCCeEEE
Q 035500 590 -PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -~~LLaTgS~DgtIRc 604 (606)
.+-|++|+.|..|++
T Consensus 174 ~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKI 189 (299)
T ss_pred ccceeeccCCccceee
Confidence 134899999999875
No 106
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.8e-13 Score=140.17 Aligned_cols=144 Identities=17% Similarity=0.326 Sum_probs=121.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+|++-++|.|++||..+++.+..++ +|...+.++.|... .+..+.||+.||+|++||++... ..+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--------e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--------ESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--------hhhhe
Confidence 579999999999999999999888766 88888999999764 56789999999999999999853 23444
Q ss_pred EeecCC--CeEEEEEccCCCEEEEEe----CCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 530 TYYDFE--QLTSVHVNSTDDQFLASG----YSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 530 t~~~~~--~V~sV~~sp~g~~LaSgs----~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+..+. +..+++.+..++.+++|. .+-.|.+||+|..+. +..+...|...|++++|+|..+.+++|||.||.|
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 555444 578888887888998885 367899999998766 8877778999999999999999999999999988
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
-.
T Consensus 191 nl 192 (376)
T KOG1188|consen 191 NL 192 (376)
T ss_pred Ee
Confidence 64
No 107
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.50 E-value=1.7e-13 Score=142.44 Aligned_cols=151 Identities=20% Similarity=0.319 Sum_probs=121.0
Q ss_pred CCCCEEEE---EeCCCcEEEEECC-CCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 448 SNPSLMAF---GTLDGEVIVINHE-NGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 448 ~dg~~LaS---Gs~DGtVrIWDi~-tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
.++.++|. ++..|..-|.-+. +|+.-..++ ..||+++|..++|+|.++..+||||+|.+|.||.+....... .
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~- 119 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-D- 119 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-C-
Confidence 35566665 4455566565543 354433222 349999999999999999999999999999999998753221 1
Q ss_pred cCCcceEEeecCCC-eEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 523 RGNSSVATYYDFEQ-LTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 523 ~~~~~i~t~~~~~~-V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
-..|+..+.+|.. |.-|+|||.. +.++|+|.|++|.+|++.+|+.+.++. |...|+++.|+.+|. +++|++.|+
T Consensus 120 -ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDK 195 (472)
T KOG0303|consen 120 -LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDK 195 (472)
T ss_pred -cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccc
Confidence 1367888887655 9999999996 799999999999999999999988887 999999999999998 589999999
Q ss_pred eEEE
Q 035500 601 MSRC 604 (606)
Q Consensus 601 tIRc 604 (606)
.||+
T Consensus 196 kvRv 199 (472)
T KOG0303|consen 196 KVRV 199 (472)
T ss_pred eeEE
Confidence 9986
No 108
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.50 E-value=1.8e-13 Score=137.63 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=130.9
Q ss_pred CceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 434 GNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 434 G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..+|--.+++.|+..+++++.+.|-|-+..|||++++.. +++ ++..|+..|+.++|...+...|+|+|.||+++++|
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 344445889999999999999999999999999998733 333 45699999999999986667899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeec---CCCeEEEEEccCC-CEEEEEeCC-CcEEEEECCCC-ceeEEEcCCCCCCeEEEEE
Q 035500 512 LNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTD-DQFLASGYS-KNVALYDINTE-KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g-~~LaSgs~D-g~I~IWDlrt~-k~v~~l~~gH~~~I~sV~f 585 (606)
++...- ....++. +.+...++|++++ +++|+-..| ..|.|.|+|.. .++..++ +|++.|+.++|
T Consensus 226 LR~leH---------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaW 295 (364)
T KOG0290|consen 226 LRSLEH---------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAW 295 (364)
T ss_pred eccccc---------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEe
Confidence 998431 1223332 4568999999987 677777655 67999999964 6688888 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEE
Q 035500 586 SHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIR 603 (606)
.|+++..++|||.|..+-
T Consensus 296 aPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQAL 313 (364)
T ss_pred cCCCCceeeecCCcceEE
Confidence 999999999999998764
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=6.4e-14 Score=144.30 Aligned_cols=151 Identities=15% Similarity=0.286 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.|+|...++|++|+.|+.|.+||..++.++..+.. +.....|+|+| ....|++|++|..+..+|++..
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l---- 261 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL---- 261 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCc-cccceeeccccccceehhhhhh----
Confidence 678899999999999999999999999999888775543 33567899999 7788999999999999999985
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..|+..+.+| ++|.+|+|+|.|+-|+|||.|.+|+||..+.+..-.....--...|.+|+|+-++++ +.+||.
T Consensus 262 -----~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky-i~SGSd 335 (433)
T KOG0268|consen 262 -----SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY-IISGSD 335 (433)
T ss_pred -----cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE-EEecCC
Confidence 4567777755 569999999999999999999999999999775533222123467999999999997 779999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.||.
T Consensus 336 d~nvRl 341 (433)
T KOG0268|consen 336 DGNVRL 341 (433)
T ss_pred Ccceee
Confidence 999985
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.49 E-value=1.1e-13 Score=147.52 Aligned_cols=169 Identities=10% Similarity=0.091 Sum_probs=131.2
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE-eccCCCC--CEEEEEEeeCCCCEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI-PSIGGTN--SVLGLCWLKKYPSKL 498 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~-~~~gH~~--~V~~L~fsp~~~~~L 498 (606)
.++.+..+....|.++ -|++++|+| ++.+||+|..||.|.+|+..+......+ ....|.. .|++|.|++ ++++|
T Consensus 303 ~q~qVik~k~~~g~Rv-~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~L 379 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRV-PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYL 379 (641)
T ss_pred hheeEEeeccCCCccc-CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchh
Confidence 4444444444445543 388999999 9999999999999999997543322222 1236776 899999998 77999
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCcee
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPL 569 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v 569 (606)
+|=|.|+++++||++.. ++|+.++.+ ..+-+.++|+|+.+++++|+. .|++.+||..+-..+
T Consensus 380 lSRg~D~tLKvWDLrq~---------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQF---------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred hhccCCCceeeeecccc---------ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 99999999999999986 345555543 344678899999999999964 378999999999999
Q ss_pred EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 570 QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.+.. ....|..+.|||-=.. +..|+.||+++|
T Consensus 451 ~ki~i-~~aSvv~~~WhpkLNQ-i~~gsgdG~~~v 483 (641)
T KOG0772|consen 451 YKIDI-STASVVRCLWHPKLNQ-IFAGSGDGTAHV 483 (641)
T ss_pred EEecC-CCceEEEEeecchhhh-eeeecCCCceEE
Confidence 88884 5788999999998776 456777899887
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.3e-13 Score=141.98 Aligned_cols=156 Identities=13% Similarity=0.191 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++-+| +|.+++.|+-.|.+++|.+.+|..+..+ .+|-..|+++.|+- ++.+|+|||.||.|.+|++..--...
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccc
Confidence 88999999 9999999999999999999999998866 49999999999995 78999999999999999976532211
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
... ...|...|.+| -+|+++...+.| ..++|+|.|.++++||+..+..+..+. ....+.+++.+|.+.. +..|
T Consensus 160 ~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~-~yiG 235 (476)
T KOG0646|consen 160 NDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERV-VYIG 235 (476)
T ss_pred cCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccE-EEec
Confidence 211 25678888865 559999988764 599999999999999999999988877 4789999999999985 6788
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+.+|.|-
T Consensus 236 t~~G~I~ 242 (476)
T KOG0646|consen 236 TEEGKIF 242 (476)
T ss_pred CCcceEE
Confidence 8888774
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.48 E-value=3.4e-13 Score=154.43 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=120.7
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------Cc---e------EEEEeccCCCCCEEEEEEeeC
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHEN-------GN---V------ACYIPSIGGTNSVLGLCWLKK 493 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~t-------g~---~------v~~~~~~gH~~~V~~L~fsp~ 493 (606)
..|+|. |.|+.|+| ||.++|+||.|+.|.||.... |. . .....+.+|.+.|..++|+|
T Consensus 66 ~~h~~s----v~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp- 139 (942)
T KOG0973|consen 66 DDHDGS----VNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP- 139 (942)
T ss_pred ccccCc----eeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-
Confidence 345675 88999999 999999999999999999762 11 0 01223569999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 035500 494 YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 494 ~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l 572 (606)
++.+++|+|.|++|.+|+.++. ..+..+.+| +.|..+.|.|-|++|||-++|++|++|.+..-...+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred CccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 7799999999999999999983 467777754 66999999999999999999999999997764444433
Q ss_pred cC-----CCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 573 TD-----MHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 573 ~~-----gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.. +-...+..+.|+|+|.++.+..+.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 31 123567889999999986554443
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.47 E-value=3.4e-13 Score=142.52 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=123.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++.+| |+.++|+|+.|..|.|||..+.+.+..+. +|.+.|.+++|-. ++..++|+|.|++|++|++...
T Consensus 205 il~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~--ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 205 ILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFK--GHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred eEEEEEcC-CCcEEEecCCCceEEEecCcccchhhccc--ccccceeeeeeec-CccceeeeecCCceEEEehhHh----
Confidence 77899999 99999999999999999999999988755 9999999999986 6788999999999999999983
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+.++- |++.|.+|.....+..+-+|+.|+++++|++. .+....+. +|.+.+-|++|-.+.. |+|||.
T Consensus 277 ------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifr-g~~~sidcv~~In~~H--fvsGSd 346 (479)
T KOG0299|consen 277 ------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFR-GGEGSIDCVAFINDEH--FVSGSD 346 (479)
T ss_pred ------HHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeee-CCCCCeeeEEEecccc--eeeccC
Confidence 3455544 56779999887667777777899999999993 33344555 7999999999976654 899999
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
||.|-
T Consensus 347 nG~Ia 351 (479)
T KOG0299|consen 347 NGSIA 351 (479)
T ss_pred CceEE
Confidence 99874
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=8.2e-13 Score=146.09 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++|+.-+| +.-++|.|..||.|+||+..++...-+ +.||+.+|+.+.|+. .+..|+|||.|+.|-+||+-.
T Consensus 68 vt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~t--fngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~----- 138 (888)
T KOG0306|consen 68 VTCLRSSD-DILLLAVGYADGSVQIFSLESEEILIT--FNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVG----- 138 (888)
T ss_pred EEEeeccC-CcceEEEEecCceEEeeccCCCceeee--ecccccceEEEEEcc-cCceEeecCCCccEEEEEecc-----
Confidence 77888888 888899999999999999998755544 459999999999997 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
......+++ +.+|+...|....++++|.|.|+.|++||+.+..+..+.- .|++.|+.+++.+ .++++++.
T Consensus 139 -----E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~---~~lvt~~~ 209 (888)
T KOG0306|consen 139 -----EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDE---KLLVTAGT 209 (888)
T ss_pred -----ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEec---ceEEEEec
Confidence 345666765 5669999888778999999999999999999999998888 6999999999987 35778887
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+-++.
T Consensus 210 dse~~v 215 (888)
T KOG0306|consen 210 DSELKV 215 (888)
T ss_pred CCceEE
Confidence 876653
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=3.4e-13 Score=136.80 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEE------CCC--------Cc------------------------eEEEEeccCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVIN------HEN--------GN------------------------VACYIPSIGG 481 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWD------i~t--------g~------------------------~v~~~~~~gH 481 (606)
|.+++||| .+.++++|+.|++-+||. +.. ++ .++...+.||
T Consensus 193 VNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH 271 (481)
T KOG0300|consen 193 VNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH 271 (481)
T ss_pred eeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence 88999999 889999999999999996 111 00 0123345689
Q ss_pred CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEE
Q 035500 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 482 ~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
.+.|.+..|.. ++..++++|.|.+-.+||+++ ..++..+.+|.. ++.++-||...+++++|.|.+.++
T Consensus 272 ~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt----------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 272 RAVVSACDWLA-GGQQMVTASWDRTANLWDVET----------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred ccceEehhhhc-Ccceeeeeeccccceeeeecc----------CceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence 99999999986 778999999999999999999 456777887655 899999999999999999999999
Q ss_pred EECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||.|.. ..+..|+ ||+..|+++.|+-+.. +++||.|.+|+.
T Consensus 341 WDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~--vVSgSDDrTvKv 382 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR--VVSGSDDRTVKV 382 (481)
T ss_pred ccchhhcceeeeec-ccccceeEEEEecCCc--eeecCCCceEEE
Confidence 999955 4478888 8999999999998876 789999999985
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=2.4e-12 Score=130.95 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=121.0
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++++.|.| ...+.|.+|+.||.|.+|+......+.+++ +|.+.|+.++.+| .+.+-+|.+.|+.+++||+-.++..
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK--AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec--ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc
Confidence 88999987 223489999999999999999998888776 9999999999999 6788899999999999998765321
Q ss_pred -cccccC------------------CcceEEeec---------CCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 519 -VADARG------------------NSSVATYYD---------FEQ--LTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 519 -~~~l~~------------------~~~i~t~~~---------~~~--V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
..++.. +..+-.++- ..+ +.++.|- ++..+++|++|+.|++||.....+
T Consensus 163 ~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 163 FVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred eeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence 111110 111111111 011 3344343 467899999999999999999999
Q ss_pred eEEEcCCCCCCeEEEEE--eCCCCeEEEEEeCCCeEEE
Q 035500 569 LQLFTDMHREPINVAKF--SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~f--sP~g~~LLaTgS~DgtIRc 604 (606)
...+. +|..+|-.+.+ +|.+ ++++|+|.||.|+.
T Consensus 242 ~~~~~-AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 242 LTEFL-AHENRVKDIASYTNPEH-EYLVTASSDGFIKV 277 (362)
T ss_pred ceeee-cchhheeeeEEEecCCc-eEEEEeccCceEEE
Confidence 99999 89999999994 3555 57999999999985
No 117
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.45 E-value=2.2e-12 Score=144.58 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+..|+ ++++++|+.|+++++||..++..+.. .+.||.+.|+++++.. .+.++++||.|.++++||..+
T Consensus 211 ~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s----- 280 (537)
T KOG0274|consen 211 VLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST----- 280 (537)
T ss_pred hhhheee---cCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC-----
Confidence 6677786 47999999999999999999888775 2459999999999985 678999999999999999888
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..++.+|.. |.++.. .+..+++||.|.+|++|++.++..+..+. ||.++|+++..+ +. ++++|+.
T Consensus 281 -----g~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~-~lvsgs~ 349 (537)
T KOG0274|consen 281 -----GECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EP-LLVSGSY 349 (537)
T ss_pred -----CcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CC-EEEEEec
Confidence 578999996644 777754 46688889999999999999999999999 799999999998 44 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 350 d~~v~V 355 (537)
T KOG0274|consen 350 DGTVKV 355 (537)
T ss_pred CceEEE
Confidence 998875
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=4.1e-13 Score=141.36 Aligned_cols=153 Identities=18% Similarity=0.295 Sum_probs=121.7
Q ss_pred eeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCc-eEEEE------------------eccCCCCCEEEEEEeeCC
Q 035500 440 PRQFEYNP------SNPSLMAFGTLDGEVIVINHENGN-VACYI------------------PSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 440 V~slafsP------~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~------------------~~~gH~~~V~~L~fsp~~ 494 (606)
+.|++|.- .-|+++|.|+.|..|.|||+.-.. ..+.+ ...+|+.+|..+.|+...
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 44555533 257899999999999999964311 11111 123799999999999877
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-CceeEE
Q 035500 495 PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINT-EKPLQL 571 (606)
Q Consensus 495 ~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt-~k~v~~ 571 (606)
.+.|+|||.|.+|++||+.++ .|..++.+ ..+|.+++|||.. ..+++||.|++|.+.|.|. +..-..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence 789999999999999999994 56777775 4669999999985 6999999999999999994 233333
Q ss_pred EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 572 FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ -.+.|-.++|+|..+..+.++..||+++-
T Consensus 326 wk--~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 326 WK--FDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred EE--eccceEEEEecCCCceeEEEecCCceEEe
Confidence 33 46889999999999999999999999984
No 119
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.45 E-value=8.8e-13 Score=132.66 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=126.1
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++-+|+| .+++.+++. .|++++.||.++......+. ..|...|..+.|+|.....|+||++||-|++||.+..
T Consensus 173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--- 247 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--- 247 (370)
T ss_pred ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---
Confidence 44557999 677777665 58999999999887776665 3788889999999987788999999999999999986
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC------------------------ce----
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTE------------------------KP---- 568 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~------------------------k~---- 568 (606)
+.|+..+.+| ..|++|.|+|.- +++.|||.|..|.+|....- ++
T Consensus 248 ------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 248 ------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred ------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 5688888865 459999999984 79999999999999966531 11
Q ss_pred -eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 -LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 -v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.++. .|...|++++|+...+|+||+-|+||.+.+
T Consensus 322 ~l~tyd-ehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 322 QLETYD-EHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccc-ccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 23444 599999999999999999999999998764
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.44 E-value=1.2e-12 Score=131.95 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=126.7
Q ss_pred ccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC--CEEEEEECCC
Q 035500 428 SHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP--SKLVAGSDSG 505 (606)
Q Consensus 428 ~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~--~~LaSgS~Dg 505 (606)
+..|.+|.. .-|.++.|-|.|...+.+++.|++++|||..+-+....|++ .+.|+.-+|+|-.. -++|+|.+|-
T Consensus 93 ~~~h~~~Hk-y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 93 AKQHENGHK-YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred cccCCccce-eeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCC
Confidence 344434432 33888999999999999999999999999999887777754 34688888988533 4688889999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCC-ceeEEE----------
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINTE-KPLQLF---------- 572 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~-k~v~~l---------- 572 (606)
.|++-|+.++ ....++.+| +.|.+|.|+|..+ .+++||.||.|++||+|.. -+...+
T Consensus 169 ~VrLCDi~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 169 QVRLCDIASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI 238 (397)
T ss_pred cEEEEeccCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence 9999999994 566778865 5599999999987 6889999999999999965 111111
Q ss_pred ---cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 ---TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ---~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+|.+.|+.++|..++.+ +++++.|..+|.
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRV 272 (397)
T ss_pred ccccccccceeeeeeecccchh-hhhccCccceEE
Confidence 2258899999999999997 667777776663
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.9e-12 Score=134.77 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=126.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-------GNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-------g~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWD 511 (606)
++|+.|+- |+.+++|||.||.|.+|.+.. +.......+..|+-+|+++...+. -..+++|+|.|.++|+||
T Consensus 126 ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 126 ITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred eeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 78899998 999999999999999998532 233333446699999999998763 235799999999999999
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----------------eeEEEcCC
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK----------------PLQLFTDM 575 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k----------------~v~~l~~g 575 (606)
+..+ ..+.++....++.+++..|.+..++.|+.+|.|.+.++.+-. .+..+. |
T Consensus 205 lS~g----------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-G 273 (476)
T KOG0646|consen 205 LSLG----------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-G 273 (476)
T ss_pred eccc----------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec-c
Confidence 9984 467777788889999999999999999999999998876432 245566 7
Q ss_pred CCC--CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 HRE--PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H~~--~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++ .|+|++.+-+|. +|++|+.||.|+.
T Consensus 274 h~~~~~ITcLais~Dgt-lLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 274 HENESAITCLAISTDGT-LLLSGDEDGKVCV 303 (476)
T ss_pred ccCCcceeEEEEecCcc-EEEeeCCCCCEEE
Confidence 988 999999999998 7999999999874
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.44 E-value=3.3e-13 Score=146.47 Aligned_cols=151 Identities=9% Similarity=0.083 Sum_probs=118.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-----EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-----ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-----v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|+.++|+|.|...+|.|+.||.|++|-+..+.. ...-.+.+|...|+.+.|+|...+.|++++.|.+|++||+..
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 789999999999999999999999999865322 112224589999999999998888999999999999999998
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+.. ......|.++|.+++|+|+|..+|+.+.||+|++|..++++ ++++-+.....+--.|.|.-+|.+++
T Consensus 710 ~~~---------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 710 AKL---------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhh---------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEE
Confidence 532 22233356789999999999999999999999999999764 45544422334445678888898655
Q ss_pred EEEeCCC
Q 035500 594 LLLHLTT 600 (606)
Q Consensus 594 aTgS~Dg 600 (606)
++ +.|.
T Consensus 781 v~-Gfdk 786 (1012)
T KOG1445|consen 781 VV-GFDK 786 (1012)
T ss_pred Ee-cccc
Confidence 44 4453
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.43 E-value=2.4e-12 Score=141.55 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++.-| +. .++|||.|.+||+|.- ++.+.++. ||.+-|.++++.+. ..|+|||.||.|++|++..
T Consensus 143 VWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~--gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~g----- 209 (745)
T KOG0301|consen 143 VWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFS--GHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLDG----- 209 (745)
T ss_pred eeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhc--cchhheeeeEEecC--CCeEeecCCceEEEEeccC-----
Confidence 77888888 44 8899999999999975 66777666 99999999999974 4699999999999999954
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.+|.. |.+++..+.+..++|+|+|++++||+.. ++++.+.. -...|+++++-++|. +++|+.
T Consensus 210 ------e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD--Ivvg~S 278 (745)
T KOG0301|consen 210 ------EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD--IVVGGS 278 (745)
T ss_pred ------ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-CccceEEEEEeeCCC--EEEecc
Confidence 46777776655 9999978888999999999999999976 66666662 245899999999988 789999
Q ss_pred CCeEEEc
Q 035500 599 TTMSRCG 605 (606)
Q Consensus 599 DgtIRc~ 605 (606)
||.||+.
T Consensus 279 DG~VrVf 285 (745)
T KOG0301|consen 279 DGRVRVF 285 (745)
T ss_pred CceEEEE
Confidence 9999974
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.7e-12 Score=127.34 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=90.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEE-eeCCCCEEEEEECCCeEEEEeCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCW-LKKYPSKLVAGSDSGCVRLFDLNHI- 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~f-sp~~~~~LaSgS~DgtIklWDl~~~- 515 (606)
+.++.|++ .|+.+|+++.|++|+|||.++ +.-..+-....|.+.|..+.| +|.-|..+|+||.|+++.||.=...
T Consensus 16 ihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 67788999 999999999999999999643 444344455699999999999 5667889999999999999985321
Q ss_pred -CCCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECC
Q 035500 516 -PPKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 516 -~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlr 564 (606)
+.....+ ....++. ..++|++|+|.|. |=.+|+++.||++|||+.-
T Consensus 95 ~~~~~~~W---v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 95 EEAHGRRW---VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred ccccccee---EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 1111111 1223344 3566899999887 4588888899999998654
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.42 E-value=1.5e-12 Score=143.16 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=116.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++..- ++. +++||.|.+++||-... +... +.||..+|++++..|.+ .++|||.|++||+|.-.+
T Consensus 104 VC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~--l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~----- 170 (745)
T KOG0301|consen 104 VCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYS--LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT----- 170 (745)
T ss_pred eeeeecCC-cCc-eEecccccceEEecchh--hhcc--cCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-----
Confidence 55666654 554 99999999999998653 3333 45999999999999853 899999999999997644
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+++|.+|.. |.++++-+ +..|+|++.||.|++||+ +|+.+.++. ||++.|++++..+.+. +++++|+
T Consensus 171 -------~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~-~Ivs~gE 239 (745)
T KOG0301|consen 171 -------LLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDG-LIVSTGE 239 (745)
T ss_pred -------hhhhhccchhheeeeEEec-CCCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCC-eEEEecC
Confidence 5778887655 99998875 457889999999999999 789999998 8999999999666665 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++|+
T Consensus 240 Drtlri 245 (745)
T KOG0301|consen 240 DRTLRI 245 (745)
T ss_pred CceEEE
Confidence 999996
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-11 Score=126.11 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=123.2
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC--CCeEEEEeCCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD--SGCVRLFDLNHI 515 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~--DgtIklWDl~~~ 515 (606)
.++.++.|++ +|.++++++.|-++++||..+++.+.++. .++-.|..++|-.. +..++.+|. |.+|+.-++..
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~--skkyG~~~~~Fth~-~~~~i~sStk~d~tIryLsl~d- 89 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTIN--SKKYGVDLACFTHH-SNTVIHSSTKEDDTIRYLSLHD- 89 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEee--cccccccEEEEecC-CceEEEccCCCCCceEEEEeec-
Confidence 4589999999 99999999999999999999999998776 45556888888653 355555555 89999999998
Q ss_pred CCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 516 PPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+.++.|.+| ..|++++.+|.++.|+|+|.|++|++||+|..++...+.. ..-..++|.|.|- ++|
T Consensus 90 ---------NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GL-ifA 156 (311)
T KOG1446|consen 90 ---------NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGL-IFA 156 (311)
T ss_pred ---------CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCc-EEE
Confidence 5689999976 4599999999999999999999999999998888766653 3334589999997 678
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
++.....|+.
T Consensus 157 ~~~~~~~IkL 166 (311)
T KOG1446|consen 157 LANGSELIKL 166 (311)
T ss_pred EecCCCeEEE
Confidence 7777767664
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=1.3e-12 Score=132.63 Aligned_cols=165 Identities=12% Similarity=0.131 Sum_probs=134.3
Q ss_pred cccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEE
Q 035500 429 HIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 429 ~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIk 508 (606)
.+|.+| +..++... ...++.+++.|.+-+||.+++|+++..+. ||.+.|.++.|++ .+.+++++|.|++-.
T Consensus 145 ~GHkDG-----iW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~-s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 145 EGHKDG-----IWHVAADS-TQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHN-SGLLLLTASGDETAH 215 (481)
T ss_pred cccccc-----eeeehhhc-CCcceeecccccceeEEeeccccceeeec--ccccceeeEEecc-ccceEEEccCCcchH
Confidence 355678 45556655 44599999999999999999999998766 9999999999998 678999999999999
Q ss_pred EEe------CCCCCCC--c----------------------ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCc
Q 035500 509 LFD------LNHIPPK--V----------------------ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 509 lWD------l~~~~~~--~----------------------~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
||. +..+... . .......|+..+.+| ..|.+..|-..|+.++++|.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 998 2221100 0 001113466677765 45888899989999999999999
Q ss_pred EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 558 VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 558 I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+||+++++++..+. ||....+.++-+|... +++|+|.|.+.|.
T Consensus 296 AnlwDVEtge~v~~Lt-GHd~ELtHcstHptQr-LVvTsSrDtTFRL 340 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILT-GHDSELTHCSTHPTQR-LVVTSSRDTTFRL 340 (481)
T ss_pred ceeeeeccCceecccc-CcchhccccccCCcce-EEEEeccCceeEe
Confidence 9999999999999999 8999999999999877 7999999998874
No 128
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.40 E-value=4.7e-12 Score=132.45 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=116.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+++|..|++||+||+.+..+...++.. +.|+++..++ ++..+.|++.|.++++.|+++. .-..
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~----------eI~~ 377 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK----------EIRQ 377 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeecc-CCeEEeeecCCCceeeeecccc----------cEEE
Confidence 467889999999999999999888877642 3899999997 6678889999999999999983 2233
Q ss_pred Eee-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 530 TYY-----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE-PINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 530 t~~-----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~-~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++. ....++.+.|+|++.++++||.||.|+||+..+++....+...+.. .|+++.|+|.|.+ +++++.++.++
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~ 456 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVT 456 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch-hhcccCCcceE
Confidence 333 2233899999999999999999999999999999999888865655 7999999999997 66777787765
Q ss_pred E
Q 035500 604 C 604 (606)
Q Consensus 604 c 604 (606)
.
T Consensus 457 l 457 (459)
T KOG0288|consen 457 L 457 (459)
T ss_pred e
Confidence 3
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.4e-13 Score=148.61 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=124.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
.+..+++|+.|..+-+|.+..-..+.. +.+|.++|-++.|++ ...++++|+.||+||+||+..+ .-+
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA----------k~v 105 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA----------KIV 105 (825)
T ss_pred cceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCc-chhhhcccccCCceeeeehhhh----------hhh
Confidence 667899999999999999876555443 459999999999998 6789999999999999999984 345
Q ss_pred EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 529 ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 529 ~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
+++.+ ...+.+|.|||-+.++|+|+.|+.+++||++..-+.+.+. +|...|..+.|+|+|.| ++.|++|.+++++
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGRW-VASGGEDNTVKIW 181 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCce-eeccCCcceeeee
Confidence 56665 4669999999999999999999999999999988999999 69999999999999996 8899999999874
No 130
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.4e-13 Score=152.81 Aligned_cols=155 Identities=14% Similarity=0.213 Sum_probs=135.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~ 516 (606)
|.+++|+.+...+||+|+.+|++.|||++..+.+..+...+.+..+..++|+|++...+++++.|. .|.+||+|..
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a- 242 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA- 242 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-
Confidence 889999998999999999999999999998877665554444556889999998888888888665 8999999985
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..|++++.+| ..|.++.|.+.+ .+++|++.|+.|.+|+.++++.+..+. ...+.+..+.|.|..+.+++
T Consensus 243 --------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 243 --------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMA 313 (1049)
T ss_pred --------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhh
Confidence 4678888765 459999999988 799999999999999999999999999 57789999999999999999
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
.++.||.|-+
T Consensus 314 ~asfdgkI~I 323 (1049)
T KOG0307|consen 314 AASFDGKISI 323 (1049)
T ss_pred hheeccceee
Confidence 9999998754
No 131
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.38 E-value=1.3e-12 Score=136.51 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|.+ ++.++++++.|+.+++|++...+...++. ||++.|+++.|.. ....+++|+.|.+||+||+..
T Consensus 222 it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k----- 292 (459)
T KOG0288|consen 222 ITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLS--GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQK----- 292 (459)
T ss_pred cceeeecC-CCceEEeecCCCceeeeeccchhhhhhhc--ccccceeeehhhc-cccceeeccccchhhhhhhhh-----
Confidence 78899999 88899999999999999999988887665 9999999999986 444599999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+.++.-..+.+.+|..+ ...++||..|++|++||+|++.++...+ ++ +.|+++..++++..++++ +.|
T Consensus 293 -----~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g~~lLss-sRD 362 (459)
T KOG0288|consen 293 -----AYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDGLELLSS-SRD 362 (459)
T ss_pred -----hheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCCeEEeee-cCC
Confidence 3456666666667778766 6789999999999999999999999999 45 599999999999986554 777
Q ss_pred CeEE
Q 035500 600 TMSR 603 (606)
Q Consensus 600 gtIR 603 (606)
-++.
T Consensus 363 dtl~ 366 (459)
T KOG0288|consen 363 DTLK 366 (459)
T ss_pred Ccee
Confidence 6654
No 132
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.2e-12 Score=133.31 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=124.8
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC--
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK-- 518 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~-- 518 (606)
.+++|++ ++..+++|+.||++|||++.+...+... ..|.+.|.++.|+| ++..|+|-+.| ..+||+.+++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEE--IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhh--HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 4678999 9999999999999999998876665544 38999999999999 67899999999 8999999886110
Q ss_pred cc--------------------cc------cCCcceE-----Eeec------------CCCeEEEEEccCCCEEEEEeCC
Q 035500 519 VA--------------------DA------RGNSSVA-----TYYD------------FEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 519 ~~--------------------~l------~~~~~i~-----t~~~------------~~~V~sV~~sp~g~~LaSgs~D 555 (606)
.+ .+ .....+. .+.. +..|.+++++++|+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 00 00 0000111 1111 4579999999999999999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 556 KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 556 g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|.|.|++..+.+.++..+.+|...|+.+.|+|+.++ +++-|.|..++
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~ 349 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAA 349 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-ccccccCCcee
Confidence 999999999999999999899999999999999987 55666666554
No 133
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.37 E-value=2e-12 Score=135.00 Aligned_cols=157 Identities=11% Similarity=0.118 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce------EE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV------AC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~------v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.++.|++.+.+.+|||+.|..|++|-++.+.. +. .-.+..|..+|+++.|+| .+.+++||+++|.|.+|-.
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEe
Confidence 778899996777999999999999998765322 22 223458999999999999 6789999999999999987
Q ss_pred CCCCC----CcccccCCc---ceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 513 NHIPP----KVADARGNS---SVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 513 ~~~~~----~~~~l~~~~---~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
..... ...... ++ -.+...+ ...|..++|+|++..+++++.|+.+++||++.|+....+. .|...|.-++
T Consensus 95 ~~~~~~~~d~e~~~~-ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgva 172 (434)
T KOG1009|consen 95 GDVRIFDADTEADLN-KEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVA 172 (434)
T ss_pred cCcCCccccchhhhC-ccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceee
Confidence 63111 000000 11 1223333 4559999999999999999999999999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCC
Q 035500 585 FSHHSPLCLLLLHLTT 600 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dg 600 (606)
|.|.+++ +++=|.|+
T Consensus 173 wDpl~qy-v~s~s~dr 187 (434)
T KOG1009|consen 173 WDPLNQY-VASKSSDR 187 (434)
T ss_pred cchhhhh-hhhhccCc
Confidence 9999987 66767676
No 134
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.37 E-value=2.2e-12 Score=127.63 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+. |.++|++|+.+..+||||.+..+. ...+..+|.+.|..+-|.. .+..++|.++|++||+||.+++
T Consensus 103 vk~~af~~-ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTg---- 175 (334)
T KOG0278|consen 103 VKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTG---- 175 (334)
T ss_pred eeeEEecc-cchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccC----
Confidence 88999998 999999999999999999986443 3345669999999999996 5678889999999999999994
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+.++..+.+|+++.++++|.++.++ +.+.|++||..+-.+++.+. -.-.|.+..++|... ++++|+.|
T Consensus 176 ------t~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~-~fVaGged 245 (334)
T KOG0278|consen 176 ------TEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKE-FFVAGGED 245 (334)
T ss_pred ------cEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc--CccccccccccCCCc-eEEecCcc
Confidence 457888889999999999998877555 44789999999988888877 357899999999985 79999999
Q ss_pred CeEE
Q 035500 600 TMSR 603 (606)
Q Consensus 600 gtIR 603 (606)
..+.
T Consensus 246 ~~~~ 249 (334)
T KOG0278|consen 246 FKVY 249 (334)
T ss_pred eEEE
Confidence 8764
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.36 E-value=5.6e-12 Score=137.60 Aligned_cols=161 Identities=12% Similarity=0.167 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK- 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~- 518 (606)
|-.+.|-| ....|++++.|.++++||+++++++..-.+.||.+.|.++||+|.++..|++|+.||.|.|||++-....
T Consensus 103 ifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 103 IFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 66788999 7789999999999999999999888764556999999999999999999999999999999999865310
Q ss_pred -----------ccc-ccCCcc----eEEeec-CCCeEE---EEEccCCCEEEEEeC-CCcEEEEECCCCceeE-------
Q 035500 519 -----------VAD-ARGNSS----VATYYD-FEQLTS---VHVNSTDDQFLASGY-SKNVALYDINTEKPLQ------- 570 (606)
Q Consensus 519 -----------~~~-l~~~~~----i~t~~~-~~~V~s---V~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~------- 570 (606)
.+. .....+ +..... ...|.+ +-+..|..++|++|. |+.|++||+|+.....
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 000 000111 111221 122444 445568889999987 9999999999764322
Q ss_pred -EEcCCC---CCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 571 -LFTDMH---REPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 571 -~l~~gH---~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.+. -| .-.+.++.....|.+++|+|. |+.|-
T Consensus 262 ~~~~-t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy 296 (720)
T KOG0321|consen 262 DKYP-THSKRSVGQVNLILDSSGTYLFASCT-DNSIY 296 (720)
T ss_pred cCcc-CcccceeeeEEEEecCCCCeEEEEec-CCcEE
Confidence 222 13 345777888888999999998 66554
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.9e-11 Score=138.13 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=127.0
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++.++|+- +|+++|.||.|-.|++-+.........+. +|+++|.++.|+| .+..||+.+-||.|++||+..+...
T Consensus 98 p~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lr--gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 98 PIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLR--GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred cceEEEEec-CCcEEEeecCceeEEEEeccccchheeec--ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence 377889998 99999999999999999998877766544 9999999999999 6789999999999999999974321
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+.+-.+...+.....+..++|||+|..++..+.|+.|++|+....+....+..- |...+..+.|+|.|.| +|+++
T Consensus 174 -~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~ 251 (933)
T KOG1274|consen 174 -KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY-IAAST 251 (933)
T ss_pred -hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE-Eeeec
Confidence 11111111112222344788999999999999999999999999998887776633 3445999999999997 78888
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.||.|-.
T Consensus 252 ~~g~I~v 258 (933)
T KOG1274|consen 252 LDGQILV 258 (933)
T ss_pred cCCcEEE
Confidence 8887753
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=7e-12 Score=127.62 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC---CC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE---NG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~---tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
-...+.|| +|+++|+++..-.|+||.+- .| +..+.+++.||.+.|..++|++ ++..++|.|.||++++||.+
T Consensus 231 n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeecc
Confidence 44568999 99999999999999999953 22 3345677889999999999998 67899999999999999976
Q ss_pred CC---CCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 514 HI---PPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 514 ~~---~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
-. ......+... + ..+. +..++ .++.+|.|+.||.+.. ..+++|..++++...+++..|...|.+++|+|+
T Consensus 309 VrY~~~qDpk~Lk~g-~-~pl~aag~~p~-RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEG-S-APLHAAGSEPV-RLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ceEecCCCchHhhcC-C-cchhhcCCCce-EEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 41 1111111100 0 0111 12334 7889999998887765 579999999999999999899999999999999
Q ss_pred CCeEEEEEeCCCeEEE
Q 035500 589 SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTgS~DgtIRc 604 (606)
|++ ++|++ |+.+|.
T Consensus 385 g~~-~atcG-dr~vrv 398 (420)
T KOG2096|consen 385 GKY-IATCG-DRYVRV 398 (420)
T ss_pred CcE-Eeeec-ceeeee
Confidence 996 55655 666664
No 138
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.3e-11 Score=118.86 Aligned_cols=143 Identities=11% Similarity=0.187 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++..+|+|+.|.+||+||++-..++.++....|. +.|.+++..| .+++|+||-.|.+.-+||++.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydirg--------- 262 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRG--------- 262 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEeeC---------
Confidence 7789999999999999999988888776544443 5689999999 679999999999999999998
Q ss_pred CCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 524 GNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 524 ~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+++.|..| ..|.+|.|+|...++.++++|..|++-|+... -++.+.. .|+..+..+.|+|+.- -|.+.|.
T Consensus 263 -~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh~~d~-sfisssa 339 (350)
T KOG0641|consen 263 -GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWHPQDF-SFISSSA 339 (350)
T ss_pred -CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE-eccCceEEEEecCccc-eeeeccC
Confidence 4578877755 44999999999999999999999999999842 2344444 5999999999999876 4788999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+++..
T Consensus 340 dkt~tl 345 (350)
T KOG0641|consen 340 DKTATL 345 (350)
T ss_pred cceEEE
Confidence 998763
No 139
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-11 Score=120.97 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=120.6
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|.+++.+| -++.+++|+.|++||+||++..++...+...+ -...+|+| .+-.+|++...+.|++||++...
T Consensus 102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d-- 173 (311)
T KOG1446|consen 102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDP-EGLIFALANGSELIKLYDLRSFD-- 173 (311)
T ss_pred eEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECC-CCcEEEEecCCCeEEEEEecccC--
Confidence 488999999 55899999999999999999888777665322 34567898 45667777777799999999864
Q ss_pred cccccCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe---EEEEEeCCCCe
Q 035500 519 VADARGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI---NVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I---~sV~fsP~g~~ 591 (606)
+.|..++.- ....+.|.|+|+|+.+..+...+.+.+.|.-+|.....+. +|...- -...|.|++++
T Consensus 174 ------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 174 ------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcE
Confidence 345555552 4558999999999999999999999999999999988888 565443 57889999996
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+.+|+.||+|..
T Consensus 247 -vl~gs~dg~i~v 258 (311)
T KOG1446|consen 247 -VLSGSDDGTIHV 258 (311)
T ss_pred -EEEecCCCcEEE
Confidence 679999998864
No 140
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.34 E-value=1.5e-11 Score=125.43 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++|.+|++ +...+|.+.....|.||...... ......+..|...|++++|.| ..+.|++|+.|..-.+|....+..
T Consensus 13 itchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~- 89 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGT- 89 (361)
T ss_pred eeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCe-
Confidence 78899999 99999999999999999987665 344344558999999999999 567899999999999999854322
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL---QLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v---~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+ ++.+..+++..++++|.|+|.++.||+||..+.|.+|-.+..+.- +.++..+.+.|+++.|+|.+- ++++
T Consensus 90 ---W--kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-Llaa 163 (361)
T KOG1523|consen 90 ---W--KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAA 163 (361)
T ss_pred ---e--ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecc
Confidence 1 233445667888999999999999999999999999999876552 223346789999999999987 7999
Q ss_pred EeCCCeEEEc
Q 035500 596 LHLTTMSRCG 605 (606)
Q Consensus 596 gS~DgtIRc~ 605 (606)
||.|+..|.+
T Consensus 164 Gs~D~k~rVf 173 (361)
T KOG1523|consen 164 GSTDGKCRVF 173 (361)
T ss_pred cccCcceeEE
Confidence 9999998864
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.33 E-value=4.6e-12 Score=137.70 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=119.7
Q ss_pred CCCEEEE--EeCCCcEEEEECCC-CceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 449 NPSLMAF--GTLDGEVIVINHEN-GNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 449 dg~~LaS--Gs~DGtVrIWDi~t-g~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
+...+|. ++..|.|-||++.. |+.- ..+...-....|+.+.|+|-+...|+.+++||.|++|.+..+.......
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-- 667 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-- 667 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence 3345554 56689999999875 3321 1222223456799999999999999999999999999998764432222
Q ss_pred CcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 525 NSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 525 ~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.|...+.. ...|+++.|||-. +.++++++|-+|++||+++++....+. +|++.|..++|+|+|+ .+||.+.||++
T Consensus 668 -tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr-~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 668 -TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGR-RIATVCKDGTL 744 (1012)
T ss_pred -CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCc-ceeeeecCceE
Confidence 24455554 4569999999985 799999999999999999999988898 8999999999999999 58999999999
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
|.
T Consensus 745 rV 746 (1012)
T KOG1445|consen 745 RV 746 (1012)
T ss_pred EE
Confidence 85
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.33 E-value=3.2e-12 Score=136.13 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=122.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++.+| |.+...++..||.|.|||+.+...++.++ ||++.+.||..++ ++..|.||+-|.+|+-||++.+
T Consensus 512 CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqfq--GhtDGascIdis~-dGtklWTGGlDntvRcWDlreg---- 583 (705)
T KOG0639|consen 512 CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--GHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREG---- 583 (705)
T ss_pred hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeeccc--CCCCCceeEEecC-CCceeecCCCccceeehhhhhh----
Confidence 35689999 99999999999999999999988888766 9999999999997 6789999999999999999984
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+......++|.++...|++.+++.|-.++.+-+-.....+. ..+. .|.+.|.+++|.+.|+| +++.+.|
T Consensus 584 ------rqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLSlKFa~cGkw-fvStGkD 654 (705)
T KOG0639|consen 584 ------RQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLSLKFAYCGKW-FVSTGKD 654 (705)
T ss_pred ------hhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEEEEecccCce-eeecCch
Confidence 3344555678899999999999999999999888876654433 3444 59999999999999998 6666666
Q ss_pred C
Q 035500 600 T 600 (606)
Q Consensus 600 g 600 (606)
.
T Consensus 655 n 655 (705)
T KOG0639|consen 655 N 655 (705)
T ss_pred h
Confidence 4
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-11 Score=132.01 Aligned_cols=138 Identities=16% Similarity=0.267 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+-+.|||....+|.+++++|.|.+||+........+ ...|..+..+|+|+|.++.+|+|.|.|..|.+||.+.
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s----- 240 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS----- 240 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEeeccc-----
Confidence 6778899988889999999999999999876665543 2489999999999999999999999999999999997
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+.....+....+...|+|.++|.++++|+..|.|..||+|.. .++.++. +|...|++++|-|..
T Consensus 241 -----~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 -----QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP 305 (673)
T ss_pred -----ccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee-ecccceeEEEeeecc
Confidence 445566667788999999999999999999999999999964 5677777 899999999998764
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.32 E-value=1.1e-11 Score=132.03 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|..+++|. ..+++.||+. |-|+|||+.. ...+..+........+.+....| +++.|++|++-.++.|||+....
T Consensus 422 VcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeeccCCC
Confidence 55677887 6778999885 5599999864 22333333334456788888888 67899999999999999998843
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ ..+... ....+++.+|+.+..+++..||.|.|||+++...++.|+ ||++.+.||..+++|.. +=|
T Consensus 499 prik--------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtk-lWT 568 (705)
T KOG0639|consen 499 PRIK--------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTK-LWT 568 (705)
T ss_pred cchh--------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCce-eec
Confidence 2111 011111 236788999999999999999999999999999999999 89999999999999986 669
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+-|.+|||
T Consensus 569 GGlDntvRc 577 (705)
T KOG0639|consen 569 GGLDNTVRC 577 (705)
T ss_pred CCCccceee
Confidence 999999998
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.32 E-value=1.1e-10 Score=118.69 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+++++|+| ++..+ ++++.++.|++||..+++....+. .+. .+..++|+|++...+++++.|+.+++||+.+
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---- 104 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGP-DPELFALHPNGKILYIANEDDNLVTVIDIET---- 104 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc--CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCC----
Confidence 56789999 77766 677889999999999888776554 332 3567899985433445566799999999987
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.....+.+++|+|++.++++++.++ .+.+||.++++...... .......++|+|++.++++++.
T Consensus 105 ------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 105 ------RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred ------CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcC
Confidence 33455565555578899999999999888765 57788999887766554 2345678999999998777777
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+.|+.
T Consensus 177 ~~~~v~i 183 (300)
T TIGR03866 177 IGGTVSV 183 (300)
T ss_pred CCCEEEE
Confidence 7887753
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.6e-11 Score=122.48 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----eEE-EEec-----------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----VAC-YIPS----------------------------------- 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----~v~-~~~~----------------------------------- 478 (606)
|++++|+. ||.++||++.|++|++|++..-. +++ .++.
T Consensus 89 vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 89 VTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred eeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 88999998 99999999999999999975311 110 0000
Q ss_pred ----------------cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEE
Q 035500 479 ----------------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVH 541 (606)
Q Consensus 479 ----------------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~ 541 (606)
..|.-.|..+-.. +++.++.|+|.|..|.+|+++.. .+.+... ...-+..+
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lkGq-----------~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLKGQ-----------LLQSIDTNQSSNYDAA 235 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecCCc-----------eeeeecccccccccee
Confidence 0011122222222 24567899999999999999852 2233332 22345677
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCC--------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 542 VNSTDDQFLASGYSKNVALYDINTE--------KPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 542 ~sp~g~~LaSgs~Dg~I~IWDlrt~--------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|+|.++++++---.|++|.+--+ ..+..+. ||++.|...+|+|++.. ++|.|.||++|.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r-~vtvSkDG~wri 304 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTR-AVTVSKDGKWRI 304 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcce-eEEEecCCcEEE
Confidence 8999999999999999999977532 2255677 89999999999999986 889999999986
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=6.5e-11 Score=120.29 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.|+| .++.|++++.||++++||.........+ .|..++.+.+|.+ ...+++|+.||.|+.+|+++.
T Consensus 16 IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~---~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~---- 85 (323)
T KOG1036|consen 16 ISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKF---KHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG---- 85 (323)
T ss_pred eeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhe---ecCCceeeeeccC--CceEEEeccCceEEEEEecCC----
Confidence 67888998 6667778889999999999877554433 6888999999985 468999999999999999984
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.......|..+|.+|...+..+.+++||.|++|++||.|....+-.+.. ...|.++..+ +. .|+.|..|
T Consensus 86 ------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v~--g~-~LvVg~~~ 154 (323)
T KOG1036|consen 86 ------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDVS--GN-RLVVGTSD 154 (323)
T ss_pred ------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEecc--CC-EEEEeecC
Confidence 3344455778899999999999999999999999999998766666663 4589888875 33 46666666
Q ss_pred CeE
Q 035500 600 TMS 602 (606)
Q Consensus 600 gtI 602 (606)
..|
T Consensus 155 r~v 157 (323)
T KOG1036|consen 155 RKV 157 (323)
T ss_pred ceE
Confidence 654
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1e-10 Score=118.82 Aligned_cols=145 Identities=12% Similarity=0.137 Sum_probs=116.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|.+ ...+++|+.||.|+.+|+.++.... .-.|..+|.++.+.+ ..+.++|||+|++|++||.+.
T Consensus 57 lL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~---igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~----- 125 (323)
T KOG1036|consen 57 LLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ---IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN----- 125 (323)
T ss_pred eeeeeccC--CceEEEeccCceEEEEEecCCccee---eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc-----
Confidence 77889976 4689999999999999999877653 237999999999997 557899999999999999997
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.++.++.....|.++..+ |+.++.|+.|..|.+||+|+..... .-+..-+-.+.+|++.|.+.- ++.+|-
T Consensus 126 -----~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSi 197 (323)
T KOG1036|consen 126 -----KVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSI 197 (323)
T ss_pred -----cccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEee
Confidence 3345556655678888664 8899999999999999999865432 222223457899999997764 788888
Q ss_pred CCeEE
Q 035500 599 TTMSR 603 (606)
Q Consensus 599 DgtIR 603 (606)
||.|-
T Consensus 198 eGRVa 202 (323)
T KOG1036|consen 198 EGRVA 202 (323)
T ss_pred cceEE
Confidence 88774
No 149
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=132.16 Aligned_cols=162 Identities=15% Similarity=0.237 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.|++|+. +|.+|++||.|-.+.|||.-..+.+..+. .||...|+++.|-|. +..+++||+.|..|+++|+...+..
T Consensus 53 VN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 53 VNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred ecceeecC-CCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 99999999 99999999999999999998888877765 599999999999985 3457899999999999999863322
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-------eEEEcCCC--CCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-------LQLFTDMH--REPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-------v~~l~~gH--~~~I~sV~fsP 587 (606)
........+...+.. ...|..++..|.+ +.|.+++.||+++-||+|.... ...+..-+ --...++..+|
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp 210 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISP 210 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecC
Confidence 111111334445553 4558899999998 7999999999999999996321 11111011 23457899999
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
..++.||.|+.|-.+|
T Consensus 211 ~rp~~laVGgsdpfar 226 (758)
T KOG1310|consen 211 SRPYYLAVGGSDPFAR 226 (758)
T ss_pred CCCceEEecCCCchhh
Confidence 9999999999997665
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.27 E-value=8.7e-12 Score=127.43 Aligned_cols=102 Identities=21% Similarity=0.351 Sum_probs=93.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY 531 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~ 531 (606)
++|+||.-|.|||.|..+++....+. +|..+|..+.++|.++++++|||.|.+|++|++++ ..++..+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~----------~~Cv~Vf 174 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT----------DVCVAVF 174 (385)
T ss_pred eEEeecceeEEEEEecchhhhcccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccC----------CeEEEEe
Confidence 88889999999999999999988665 99999999999999999999999999999999999 5688877
Q ss_pred ec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 532 YD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 532 ~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
.+ .+.|.+|.|+++|.+++|+|.|.++++|++..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 63 46699999999999999999999999999984
No 151
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=6.4e-11 Score=128.12 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=127.9
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ce-------EEEEeccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NV-------ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~-------v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
|.|. |.|+++.+ ++..+.+||-||+|+.|++... .. +..-.+.||.+.|+.+++++ ....|++||.
T Consensus 343 H~gP----Vl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~ 416 (577)
T KOG0642|consen 343 HEGP----VLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSS 416 (577)
T ss_pred ccCc----eEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecC
Confidence 5587 88999998 9999999999999999975421 11 11112459999999999997 5567999999
Q ss_pred CCeEEEEeCCCCCCCc--------ccc-----------------------c---CCcceEEee--------cCCCeEEEE
Q 035500 504 SGCVRLFDLNHIPPKV--------ADA-----------------------R---GNSSVATYY--------DFEQLTSVH 541 (606)
Q Consensus 504 DgtIklWDl~~~~~~~--------~~l-----------------------~---~~~~i~t~~--------~~~~V~sV~ 541 (606)
||+++.|+.....+.. .+. . -...+..+. ....++.|.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 9999999976543300 000 0 001111221 113478899
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 542 VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 542 ~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+||...+.+++..|+.|+++|..+++++.... +|...++++++.|.|.+ |++|+.|+.|+.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtslai~~ng~~-l~s~s~d~sv~l 557 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPY-LMSGSHDGSVRL 557 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchhee-eccceecceeecCCCce-EEeecCCceeeh
Confidence 99999999999999999999999999999998 79999999999999996 889999999873
No 152
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=4.6e-10 Score=110.54 Aligned_cols=138 Identities=12% Similarity=0.240 Sum_probs=96.9
Q ss_pred EEEEcCCCCCEEEEEeC----------CCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEE--EEECCCeEE
Q 035500 442 QFEYNPSNPSLMAFGTL----------DGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLV--AGSDSGCVR 508 (606)
Q Consensus 442 slafsP~dg~~LaSGs~----------DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~La--SgS~DgtIk 508 (606)
.+.|+| +|++|+.-.. -|...+|-++. +.....+.. ...++|.+++|+|. +..|+ +|..++.|.
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~-g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPN-GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcC-CCEEEEEEccCCcccE
Confidence 467888 6766665332 23455565532 333344433 34557999999994 55543 345678999
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+||++. .++..+. ..+++.|.|+|+|+++++||.+ |.+.+||.++.+.+...+ | ..++.++|
T Consensus 87 lyd~~~-----------~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~W 151 (194)
T PF08662_consen 87 LYDVKG-----------KKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEW 151 (194)
T ss_pred EEcCcc-----------cEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEE
Confidence 999974 2455553 4568899999999999998754 679999999888887776 4 45789999
Q ss_pred eCCCCeEEEEEe
Q 035500 586 SHHSPLCLLLLH 597 (606)
Q Consensus 586 sP~g~~LLaTgS 597 (606)
+|+|++++++++
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998655544
No 153
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.24 E-value=4.6e-11 Score=126.57 Aligned_cols=151 Identities=13% Similarity=0.199 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe--------------c--cCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP--------------S--IGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~--------------~--~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
+.+++++| +..+..+++.||+|.=|++.+|+...++- . .+|.+.+.+++.++ ++.+|++|+.
T Consensus 145 ~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkylatgg~ 222 (479)
T KOG0299|consen 145 VTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYLATGGR 222 (479)
T ss_pred ceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEEEecCC
Confidence 77899999 88899999999999999998887542111 1 27889999999998 6799999999
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
|..|.||+.++ ..++..+.+| +.|.+++|-...+.++++|.|++|++|++.....+.++- ||++.|..
T Consensus 223 d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~ 291 (479)
T KOG0299|consen 223 DRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLG 291 (479)
T ss_pred CceEEEecCcc----------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceee
Confidence 99999999999 4577777765 669999998777899999999999999999887777777 89999999
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.-..-+. .+..|+.|+++|.
T Consensus 292 IdaL~reR-~vtVGgrDrT~rl 312 (479)
T KOG0299|consen 292 IDALSRER-CVTVGGRDRTVRL 312 (479)
T ss_pred echhcccc-eEEeccccceeEE
Confidence 98876665 5777889999985
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3.9e-10 Score=124.20 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=122.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
++++||+. ..+.+|.|=.||.|-||++..+-... .+.. +-.+.|-+++|.+ +..|+|.+.+|+|.-||+.+.
T Consensus 28 I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~l--- 100 (691)
T KOG2048|consen 28 IVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTL--- 100 (691)
T ss_pred eEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc--CCeEEeecCCceEEEEecccC---
Confidence 78999998 67789999999999999998754433 3332 4467899999994 467899999999999999984
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTg 596 (606)
.+...+.. .++|++++.+|.+..++.|++||.+...+...++....-..+ -+++|.+++|+|++.. +++|
T Consensus 101 -------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~G 172 (691)
T KOG2048|consen 101 -------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGG 172 (691)
T ss_pred -------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEec
Confidence 34555553 567999999999999999999998888888888764332222 3589999999999985 8899
Q ss_pred eCCCeEEEc
Q 035500 597 HLTTMSRCG 605 (606)
Q Consensus 597 S~DgtIRc~ 605 (606)
+.||.|||.
T Consensus 173 s~Dg~Iriw 181 (691)
T KOG2048|consen 173 SIDGVIRIW 181 (691)
T ss_pred ccCceEEEE
Confidence 999999984
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.24 E-value=3.7e-10 Score=114.79 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=100.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+++++.||.|++||..+++....+. +|. .+.+++|+|+ +..+ ++++.|+.|++||..++ ....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~----------~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATG----------EVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCC----------cEEE
Confidence 578899999999999999988877665 333 4678999985 4554 67788999999999873 2333
Q ss_pred EeecCCCeEEEEEccCCCEEEE-EeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLA-SGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaS-gs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
.+..+..+..++|+|+++.+++ ++.|+.+++||+++++.+..++ +...+..++|+|++.. +++++.++
T Consensus 68 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~-l~~~~~~~ 136 (300)
T TIGR03866 68 TLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKI-VVNTSETT 136 (300)
T ss_pred eccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCE-EEEEecCC
Confidence 4444444677899999986654 4568999999999988877776 2345788999999986 55555543
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.8e-10 Score=114.06 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=116.4
Q ss_pred eeEEEE-cCCCCCEEEEEeCCCcEEEEECCC-------CceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEE
Q 035500 440 PRQFEY-NPSNPSLMAFGTLDGEVIVINHEN-------GNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slaf-sP~dg~~LaSGs~DGtVrIWDi~t-------g~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklW 510 (606)
|..+.| +|.-|+.+|+++.|++++||.-.. .+-+..-.+...++.|++++|.|.. +-++++++.||++|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 445667 678999999999999999998421 1223333345778899999999853 4469999999999999
Q ss_pred eCCCCCCCc--------c----c------------c--------------c------CC-----------c--ceEEee-
Q 035500 511 DLNHIPPKV--------A----D------------A--------------R------GN-----------S--SVATYY- 532 (606)
Q Consensus 511 Dl~~~~~~~--------~----~------------l--------------~------~~-----------~--~i~t~~- 532 (606)
+........ . + + . .+ + .+.++.
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 865421000 0 0 0 0 00 0 011222
Q ss_pred cCCCeEEEEEccC-C---CEEEEEeCCCcEEEEECCCC--------------------ceeEEEcCCCCCCeEEEEEeCC
Q 035500 533 DFEQLTSVHVNST-D---DQFLASGYSKNVALYDINTE--------------------KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 533 ~~~~V~sV~~sp~-g---~~LaSgs~Dg~I~IWDlrt~--------------------k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
+.++|++|+|.|. | ..+|+++.|| |+||.+... +.+..+. .|.+.|+.+.|+-.
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMT 299 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeee
Confidence 3477999999998 3 4899999999 999998841 1244555 69999999999999
Q ss_pred CCeEEEEEeCCCeEEE
Q 035500 589 SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTgS~DgtIRc 604 (606)
|. +++++|.||+||.
T Consensus 300 Gt-iLsStGdDG~VRL 314 (361)
T KOG2445|consen 300 GT-ILSSTGDDGCVRL 314 (361)
T ss_pred ee-EEeecCCCceeee
Confidence 87 7999999999984
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.23 E-value=8.7e-11 Score=120.00 Aligned_cols=149 Identities=13% Similarity=0.211 Sum_probs=121.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+.|++|||.+...+|.|+...++-|+....+.+....- +|.+.|+.++|.+ +++.|++|++ |-.|-.||++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~--- 283 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS--- 283 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeec--ccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc---
Confidence 78999999999999999999999999988777766544 9999999999998 6678999885 778999999985
Q ss_pred cccccCCcceEEeecC-C-CeEEE--EEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDF-E-QLTSV--HVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~-~V~sV--~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
+.++..+..+ . .=..| ...|+++++++|+.||.|++||+.. +..+..+. .|+..|+.|+++|.-+ ++
T Consensus 284 ------~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mp-il 355 (406)
T KOG2919|consen 284 ------RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMP-IL 355 (406)
T ss_pred ------cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCcccc-ee
Confidence 3345444432 1 12223 3368899999999999999999998 78788888 6999999999999977 78
Q ss_pred EEEeCCCeE
Q 035500 594 LLLHLTTMS 602 (606)
Q Consensus 594 aTgS~DgtI 602 (606)
||+|....-
T Consensus 356 atssGqr~f 364 (406)
T KOG2919|consen 356 ATSSGQRIF 364 (406)
T ss_pred eeccCceee
Confidence 888876543
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-11 Score=128.23 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=120.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
-++++|+..|.|+|||++...+.+.. .+|++.|+++.++. .+.++|+++..|.|-|..+.+. ....+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~l--kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~----------~~tt~ 158 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFL--KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTK----------QKTTT 158 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhc--cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccC----------ccccc
Confidence 59999999999999999965555544 49999999999986 6689999999999999998883 33445
Q ss_pred eecC--CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 531 YYDF--EQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 531 ~~~~--~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|.+. ..|.-+.+||..+ ++.++|++|.|.+||+....+...+...|+.+...|+|+|..+.++++-|.|+.|-+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 6653 3377999999885 788889999999999999899888887899999999999999999999999987753
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.22 E-value=7.2e-11 Score=125.02 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
||++++++|..+.++||||.|++.+|||++.-... ..+....|+..|.+..|+|.++. |++.+.|..|+|||...-.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 58899999999999999999999999998762222 24566799999999999996655 9999999999999985211
Q ss_pred CCcccccCCcceEEeecCC------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCC
Q 035500 517 PKVADARGNSSVATYYDFE------QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHS 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g 589 (606)
.. ..+..+..|.. ......|.|+.+++++|-.-..|-|+|-..++.+..+...-...|.+ .+|||.+
T Consensus 403 a~------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 403 AK------DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cc------CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 10 23444444421 13455699999999999999999999999999888776444556655 5799998
Q ss_pred CeEEEEEeCCCeEE
Q 035500 590 PLCLLLLHLTTMSR 603 (606)
Q Consensus 590 ~~LLaTgS~DgtIR 603 (606)
..++|.|+..|.|-
T Consensus 477 ~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIY 490 (498)
T ss_pred cceeccCCccceEE
Confidence 76666666666664
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.21 E-value=2e-10 Score=128.65 Aligned_cols=163 Identities=15% Similarity=0.248 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--E--EEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--C--YIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~--~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~ 514 (606)
|+|++|+|.+++++|.|..+|+|-+||...+... . ......|..+|+.+.|...- +.-++|+|.||.|+.|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 7899999999999999999999999999876552 2 22345799999999996521 14499999999999999865
Q ss_pred CCCCcc---------------------cc------------------------cC--C------cceEEee-cCCCeEEE
Q 035500 515 IPPKVA---------------------DA------------------------RG--N------SSVATYY-DFEQLTSV 540 (606)
Q Consensus 515 ~~~~~~---------------------~l------------------------~~--~------~~i~t~~-~~~~V~sV 540 (606)
...... .+ .+ . ++...+. |.++|.+|
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 321000 00 00 0 1121222 45779999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 541 HVNSTDDQFLASGYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 541 ~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.++|-+..++.++.|.+++||... ...++..+. .+...|++++|+|..+.+|+++..||.+-
T Consensus 405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 999998655544449999999988 677777777 47788999999999999999999999874
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.21 E-value=1.3e-09 Score=111.68 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|+| ++..+++++. |+.+++|+...+..+..+. +|...|.+++|+|.+...+++++.|++|++||...
T Consensus 158 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---- 230 (466)
T COG2319 158 VTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---- 230 (466)
T ss_pred EEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC----
Confidence 67899999 7778888885 9999999999877777665 79999999999974433666669999999998774
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+. .+..+.......|+|++..+++++.|+.+++||++.... +..+ .+|...|.++.|+|++..+++ +
T Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~-~ 302 (466)
T COG2319 231 ------GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLAS-G 302 (466)
T ss_pred ------CcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEE-e
Confidence 22333 354443322227999998999999999999999997765 5555 479999999999998776555 8
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.++.
T Consensus 303 ~~d~~~~~ 310 (466)
T COG2319 303 SSDGTVRL 310 (466)
T ss_pred eCCCcEEE
Confidence 88876553
No 162
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.19 E-value=2e-10 Score=126.69 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+++++++| ++++||+|..-|++|||++..-+....++ .|...|.++.|+.. ...+|+|+|.|.-|+++|+...-.
T Consensus 462 ~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 462 FRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred eEEEEECC-CcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 88999999 99999999999999999987766554444 66666666666521 123466666666666666532100
Q ss_pred Cc--------------------------------------------------------ccc-------------------
Q 035500 518 KV--------------------------------------------------------ADA------------------- 522 (606)
Q Consensus 518 ~~--------------------------------------------------------~~l------------------- 522 (606)
.. +++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 00 000
Q ss_pred -------cCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 523 -------RGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 523 -------~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
...+..++|++ .+..-.+...|.|.++|++..|+++.++|.-+++++..+. ||...|+.++|.++-++
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeeeecccchh
Confidence 00234455653 2447788899999999999999999999999999999998 89999999999999997
Q ss_pred EEEEEeCCCeE
Q 035500 592 CLLLLHLTTMS 602 (606)
Q Consensus 592 LLaTgS~DgtI 602 (606)
+.+.++||-|
T Consensus 698 -lISvsgDgCI 707 (1080)
T KOG1408|consen 698 -LISVSGDGCI 707 (1080)
T ss_pred -heeecCCceE
Confidence 5677778765
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.19 E-value=1.9e-10 Score=126.86 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=125.7
Q ss_pred cCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEe
Q 035500 417 AWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWL 491 (606)
Q Consensus 417 ~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs 491 (606)
.||.+.++ +||+ +-|.+++.+| +++++|+++.. -.|++|+..+...+..++ +|.-.|+.++|+
T Consensus 514 LwPEv~KL--YGHG-------yEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLTVT~l~FS 581 (764)
T KOG1063|consen 514 LWPEVHKL--YGHG-------YEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLTVTRLAFS 581 (764)
T ss_pred cchhhHHh--ccCc-------eeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceEEEEEEEC
Confidence 45555555 4555 2388999999 99999998754 468999998877766444 999999999999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCC--ce
Q 035500 492 KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTE--KP 568 (606)
Q Consensus 492 p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~ 568 (606)
| ++.+|+|.|+|.++.+|......... ......+.|.. |++.+|+|++.+|+|+|.|++|++|-.... +.
T Consensus 582 p-dg~~LLsvsRDRt~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 582 P-DGRYLLSVSRDRTVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred C-CCcEEEEeecCceEEeeeeecccchh------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 9 77999999999999999986532211 11112333444 899999999999999999999999998876 33
Q ss_pred eEE-EcCCCCCCeEEEEEeCCC----CeEEEEEeCCCeE
Q 035500 569 LQL-FTDMHREPINVAKFSHHS----PLCLLLLHLTTMS 602 (606)
Q Consensus 569 v~~-l~~gH~~~I~sV~fsP~g----~~LLaTgS~DgtI 602 (606)
+.. -...+..+|++++|.|-. ..+++.|-..|.|
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 322 111478999999998643 3477888777765
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.5e-10 Score=128.03 Aligned_cols=139 Identities=12% Similarity=0.234 Sum_probs=109.9
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC------CCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG------GTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g------H~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|++. |.++.|+| .+++||+.+-||+|+|||++++....++.... ....+..++|+|+ +..++..+.|+
T Consensus 137 h~ap----Vl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~ 210 (933)
T KOG1274|consen 137 HDAP----VLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDN 210 (933)
T ss_pred cCCc----eeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCC
Confidence 4465 88999999 99999999999999999999988776554221 1345678999995 46777888899
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee--c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY--D-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV 582 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~--~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s 582 (606)
+|++++..... ....+. + +..+..++|+|.|.++|+++.||.|.|||..+.+. . .....|.+
T Consensus 211 ~Vkvy~r~~we----------~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~-~~~~~Vc~ 275 (933)
T KOG1274|consen 211 TVKVYSRKGWE----------LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H-EFKRAVCC 275 (933)
T ss_pred eEEEEccCCce----------eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c-cccceeEE
Confidence 99999988843 333443 2 33499999999999999999999999999998322 1 23578999
Q ss_pred EEEeCCCCe
Q 035500 583 AKFSHHSPL 591 (606)
Q Consensus 583 V~fsP~g~~ 591 (606)
++|.|+...
T Consensus 276 ~aw~p~~n~ 284 (933)
T KOG1274|consen 276 EAWKPNANA 284 (933)
T ss_pred EecCCCCCe
Confidence 999998774
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=5.4e-10 Score=123.07 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++.+| .+..++.|+.||.+..++...++......+...++.|.++.|+| .+..+++|+.||.|++||..++....
T Consensus 113 IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 113 IWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred eeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE
Confidence 89999999 77899999999988888888887766555556678999999999 56779999999999999999853211
Q ss_pred ccccCCcceEEeecCCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ--LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~--V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.. ...+..+....+ |++|.+- ....+++|..-|+|++||...+..++.+. .|...|.+++.++++.. +.++|
T Consensus 191 -~~--~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~-vfsaG 264 (691)
T KOG2048|consen 191 -II--TMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDR-VFSAG 264 (691)
T ss_pred -Ee--eecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCe-EEEcc
Confidence 00 000111111122 8888887 45788999999999999999999999999 69999999999999886 45666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
.|+.|
T Consensus 265 vd~~i 269 (691)
T KOG2048|consen 265 VDPKI 269 (691)
T ss_pred CCCce
Confidence 66544
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.18 E-value=2.5e-10 Score=116.75 Aligned_cols=151 Identities=11% Similarity=0.139 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGG-----TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH-----~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.|++|+| ||.+|.+| ....|||||+ +.|+....+....| .+-+.+++|+|.+...++.||.-.++-|+.-.
T Consensus 161 AhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 161 AHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred heeEEecC-CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 67899999 99998766 5788999998 55665544433333 67789999999988899999999998888766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC-CceeEEEcCCCCC-CeEEEEE--eC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-SKNVALYDINT-EKPLQLFTDMHRE-PINVAKF--SH 587 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt-~k~v~~l~~gH~~-~I~sV~f--sP 587 (606)
. ..|+..+.+ .+.|+.++|+++|+.|++|+. |-.|..||+|. +.++..+. .|.+ .-..|-| .|
T Consensus 239 ~----------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 239 G----------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDP 307 (406)
T ss_pred C----------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCC
Confidence 6 456666665 566999999999999999974 68999999995 56677777 5755 3334555 58
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
.+. +||+|+.||.|+.
T Consensus 308 ~~~-~LasG~tdG~V~v 323 (406)
T KOG2919|consen 308 KGE-ILASGDTDGSVRV 323 (406)
T ss_pred CCc-eeeccCCCccEEE
Confidence 887 5899999999985
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=3.4e-10 Score=117.75 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|..++|+- ++++||+|+.|..+++|+++. .+++... ...|.+.|.+++|.. ....++||+.+++|...|+.
T Consensus 59 iNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 59 INALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEcc-CCeeEecCCCcceeEeeecc
Confidence 88999998 799999999999999999753 2444332 346778999999997 55789999999999999999
Q ss_pred CCCCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEE-cCCCCCCeEEEEEeCC
Q 035500 514 HIPPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLF-TDMHREPINVAKFSHH 588 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l-~~gH~~~I~sV~fsP~ 588 (606)
+ +..+..+.+. +.|..+..||.+++|++.+.++.|.+||+|... +...+ ..-.....+++-|+|.
T Consensus 136 t----------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 136 T----------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred c----------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 8 5667777764 479999999999999999999999999999654 32222 2124567889999999
Q ss_pred CCeEEEEEeCCC
Q 035500 589 SPLCLLLLHLTT 600 (606)
Q Consensus 589 g~~LLaTgS~Dg 600 (606)
.+.++++++..+
T Consensus 206 ~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 206 TPALILVNSETG 217 (609)
T ss_pred CceeEEeccccC
Confidence 999999887664
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=5e-10 Score=110.81 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=116.1
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCC---C-----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHEN---G-----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~t---g-----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+-+|+| .++++++|+.+|+|.|+.+++ + .....+...+|.++|+.++|.- ..|++|+. |.|+=|..+
T Consensus 15 ~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 15 AQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeeh
Confidence 346899 889999999999999998653 1 1122344469999999999983 57788775 999999877
Q ss_pred CCCCC---cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPK---VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~---~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
..... ...+.-..|.++-... ..|+++...|..+-++.++.|+.++-||+++|+..++++ ||++.|.++.--...
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 64321 1111111222221112 338999999998877778899999999999999999999 899999999984444
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+. +.+|++||++|.
T Consensus 169 ~q-ilsG~EDGtvRv 182 (325)
T KOG0649|consen 169 GQ-ILSGAEDGTVRV 182 (325)
T ss_pred cc-eeecCCCccEEE
Confidence 43 679999999995
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.2e-09 Score=116.11 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
++++.||| ...++.+|+.||+++||-+.. ...+..+. --..+|.+.+|.|++...++++|.-.....||+.+.+.
T Consensus 216 I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~--l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 216 ITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH--LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred ceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeee--eccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 88999999 777999999999999998863 23333333 33568999999996655899999999999999987532
Q ss_pred Cc-cccc----------------------------------CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 518 KV-ADAR----------------------------------GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 518 ~~-~~l~----------------------------------~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
.. .++. ....+.+++-.+.|.++.|+.++..+++++.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 11 0000 112233444456688999999999999999999999999
Q ss_pred CCCCceeEEEcCCCCCCe--EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPI--NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I--~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++...+++.+.. .+.| ++++.++++.+ ||+||.-|+|-+
T Consensus 373 l~~~~~~~rf~D--~G~v~gts~~~S~ng~y-lA~GS~~GiVNI 413 (514)
T KOG2055|consen 373 LRQNSCLHRFVD--DGSVHGTSLCISLNGSY-LATGSDSGIVNI 413 (514)
T ss_pred cCCcceEEEEee--cCccceeeeeecCCCce-EEeccCcceEEE
Confidence 999999888874 3444 56777899985 999999998864
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.8e-10 Score=118.96 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=121.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE--EEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL--GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~--~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|+.++|+. ++..|.+.+.+|.|.+||+++..++..+.-. +.|. .+|.++ ++.+||+||..|.|.|||.++...
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDD---GSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeec---CccceeeeeecC-CCceEEeccCcceEEEeccchhhc
Confidence 88999997 8899999999999999999998888766533 3444 455555 678999999999999999776322
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcC--CCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTD--MHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~fsP~g~~L 592 (606)
..+ ..|+.++.. ...|++++|+|+++++|.+| ....+++--+.+......++. ..-+.|+|++|+|.|.+
T Consensus 422 s~~----PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~- 496 (514)
T KOG2055|consen 422 STN----PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY- 496 (514)
T ss_pred cCC----CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce-
Confidence 211 456666664 56799999999999887776 457899988887777666662 23467999999999995
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|.|..+|.++.
T Consensus 497 lAvGNe~grv~l 508 (514)
T KOG2055|consen 497 LAVGNEAGRVHL 508 (514)
T ss_pred EEeecCCCceee
Confidence 899999998874
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=115.49 Aligned_cols=142 Identities=16% Similarity=0.302 Sum_probs=113.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe--------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIP--------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~--------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++++|..+|.|-+||+.++..+..++ ...|..+|.++.+.+. -..=++|+.+..+..|.++....
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~g------ 239 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTG------ 239 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccC------
Confidence 66778899999999999874433222 2468999999999873 23446788888899999887422
Q ss_pred CCcceEE-ee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVAT-YY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t-~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
.-++.. .. .+..|..+.+-|+++.+||+|.|+.||+|..++.+++..+. -|+..|++++|+|+.+ ++|++|.|+.
T Consensus 240 -slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~-lmAaaskD~r 316 (323)
T KOG0322|consen 240 -SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCE-LMAAASKDAR 316 (323)
T ss_pred -cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCc-hhhhccCCce
Confidence 112221 22 23448899999999999999999999999999999999999 5999999999999976 7999999998
Q ss_pred EE
Q 035500 602 SR 603 (606)
Q Consensus 602 IR 603 (606)
|-
T Consensus 317 IS 318 (323)
T KOG0322|consen 317 IS 318 (323)
T ss_pred EE
Confidence 75
No 172
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.13 E-value=1.1e-09 Score=123.05 Aligned_cols=148 Identities=14% Similarity=0.243 Sum_probs=129.9
Q ss_pred EcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 445 YNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+|| .--+.++.|+.+|.+++|++++++.+.+++ ++...|+++.-+| --..++.|..+|+|.+++++.
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~--------- 233 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKF--------- 233 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccCC-cceEEEEeccCceEEEEEccc---------
Confidence 566 334789999999999999999999998777 8889999999888 346799999999999999998
Q ss_pred CCcceEEeecC-CCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVATYYDF-EQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t~~~~-~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
.+-+.+|++. ++|++++|.-||+ ++++|+..|.+.+||++..+.+.....+|.+.|+...|-|..+ +++|++.|..
T Consensus 234 -dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnS 311 (910)
T KOG1539|consen 234 -DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNS 311 (910)
T ss_pred -CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCc
Confidence 4568899985 8899999999985 7888888899999999999998888888999999999999877 7899999988
Q ss_pred EEEcC
Q 035500 602 SRCGI 606 (606)
Q Consensus 602 IRc~i 606 (606)
.|..|
T Consensus 312 lk~~v 316 (910)
T KOG1539|consen 312 LKVWV 316 (910)
T ss_pred eeEEE
Confidence 87653
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=9e-10 Score=119.38 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.++|+| ....+++|+.||++++|+++. +...+.+.+.+|.++|.|++..+ ++..++|||.||+|+.|++.
T Consensus 297 ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 297 IRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccC
Confidence 67889999 555889999999999999832 33445566779999999999987 77899999999999999877
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
.....-..-.......++.+ .++|+.+++|+....+++++.||++++|+.....+
T Consensus 375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 32111111110112234454 46699999999999999999999999998875543
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.4e-09 Score=115.48 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=115.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++..+| .|.+||+|+.||+||||.+.+|+++.++.+. +.|.+++|+|....-+++++.+..+.+-+-.-+....
T Consensus 403 Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 403 VRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE 478 (733)
T ss_pred EEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence 89999999 9999999999999999999999999988764 4699999999655556666666666665543221100
Q ss_pred ---------------------ccccC------Ccc-eEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce
Q 035500 520 ---------------------ADARG------NSS-VATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKP 568 (606)
Q Consensus 520 ---------------------~~l~~------~~~-i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~ 568 (606)
..|.. ... ..++.+..+|.+|.||..|.+|++...+ ..|.|+++...+.
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 01110 011 2355677889999999999999988654 6799999998877
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..-|. -..+.|.++.|+|..+++|++.-
T Consensus 559 Q~PF~-kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 559 QSPFR-KSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cCchh-hcCCceeEEEecCCCceEEEEec
Confidence 76676 35688999999999998776654
No 175
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.10 E-value=5.7e-10 Score=123.13 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=123.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCC----------CCEEEEEECCCeEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKY----------PSKLVAGSDSGCVRL 509 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~----------~~~LaSgS~DgtIkl 509 (606)
-.+.|+| ..+.+.....|+.++|||+..- +.-+...+..|..-||++.-.|.+ ..-|++||.|++|++
T Consensus 328 IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 3578998 6678889999999999999763 333334455788889888766522 245999999999999
Q ss_pred EeCCCCCCCc----ccc------------------------cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 035500 510 FDLNHIPPKV----ADA------------------------RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY 561 (606)
Q Consensus 510 WDl~~~~~~~----~~l------------------------~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW 561 (606)
||+....... +++ ..+....++.....+.+++++|+|+++|+|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9987631100 000 112233344556669999999999999999999999999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeC--CCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSH--HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP--~g~~LLaTgS~DgtIRc 604 (606)
|+..-+....++ +|...|.|+.|+. -+..+||++|.|+.|..
T Consensus 487 ~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 487 DLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred Eehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 999888888888 8999999999973 24568999999998875
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.10 E-value=7.5e-10 Score=111.90 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=118.4
Q ss_pred ccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEECCC-eE
Q 035500 430 IYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGSDSG-CV 507 (606)
Q Consensus 430 ~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS~Dg-tI 507 (606)
+.|+-+ |..++|.....+.+|+.|.||.||+||++.-+.-..+--.+. ..+..-++|++++++++|+-..|. .|
T Consensus 193 IAHDKE----V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 193 IAHDKE----VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred EecCcc----eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 345666 889999986678999999999999999987554433222233 567889999999999999877665 78
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCC
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEK------PLQLFTDMHREP 579 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k------~v~~l~~gH~~~ 579 (606)
.+-|++.. ..++..++.| ..|++|+|.|.+ ..+.|+|+|..+.|||+...- ++.... -.+.
T Consensus 269 ~iLDiR~P---------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E 337 (364)
T KOG0290|consen 269 VILDIRVP---------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE 337 (364)
T ss_pred EEEEecCC---------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence 89999985 3477777755 559999999996 699999999999999998531 222222 4678
Q ss_pred eEEEEEeCCCCeEEEEEeCC
Q 035500 580 INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~D 599 (606)
|+.+.|+|..+--++.+...
T Consensus 338 VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeeeecccCCCEEEEEecC
Confidence 99999997766556666554
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.08 E-value=3.3e-10 Score=124.14 Aligned_cols=145 Identities=11% Similarity=0.228 Sum_probs=120.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|..++|-| ||..++.+..| .+.+||...|....+++ ||++.|++++|+. ++..++||+.|+.|-+|.-..
T Consensus 15 i~d~afkP-DGsqL~lAAg~-rlliyD~ndG~llqtLK--gHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl----- 84 (1081)
T KOG1538|consen 15 INDIAFKP-DGTQLILAAGS-RLLVYDTSDGTLLQPLK--GHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL----- 84 (1081)
T ss_pred hheeEECC-CCceEEEecCC-EEEEEeCCCcccccccc--cccceEEEEEEcc-CCceeccCCCceeEEEecccc-----
Confidence 77899999 88877776544 58999999999988766 9999999999997 789999999999999998775
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+..+.|.+.|.++.|+|-...++|++- ....+|....... ...+ ...+|.+.+|+.+|.+ ++-|-.|
T Consensus 85 ------EG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k--ss~R~~~CsWtnDGqy-lalG~~n 153 (1081)
T KOG1538|consen 85 ------EGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK--SSSRIICCSWTNDGQY-LALGMFN 153 (1081)
T ss_pred ------cceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh--hheeEEEeeecCCCcE-EEEeccC
Confidence 35677889999999999999999999986 3467897764433 2222 3578999999999985 8999999
Q ss_pred CeEEEc
Q 035500 600 TMSRCG 605 (606)
Q Consensus 600 gtIRc~ 605 (606)
|+|.++
T Consensus 154 GTIsiR 159 (1081)
T KOG1538|consen 154 GTISIR 159 (1081)
T ss_pred ceEEee
Confidence 998763
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.08 E-value=3.5e-09 Score=108.61 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=118.8
Q ss_pred eeEEEEcC----CCCCEEEEEeCCCcEEEEECCC-C--ceEEEEeccCCCCCEEEEEEeeC---CCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNP----SNPSLMAFGTLDGEVIVINHEN-G--NVACYIPSIGGTNSVLGLCWLKK---YPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP----~dg~~LaSGs~DGtVrIWDi~t-g--~~v~~~~~~gH~~~V~~L~fsp~---~~~~LaSgS~DgtIkl 509 (606)
+..++|++ ...+.+|++|.+ ++.+|.... + ..+..+.-..|...-+.++|.-+ +...++.||.-|.|+|
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV 119 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV 119 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE
Confidence 34455654 456677777755 488888654 3 23333333457888899999753 2346888999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEc--CCCCCCeEEEEE
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFT--DMHREPINVAKF 585 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~f 585 (606)
.|+.+ ......+.+| .+|+.+.++|.. ++++++|.|..|++|++++..++..|. .||...|.++.|
T Consensus 120 id~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 120 IDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred Eecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99998 3455666654 569999999996 799999999999999999999998886 259999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+++|.+ +++||.|.+++.
T Consensus 190 ~~~gd~-i~ScGmDhslk~ 207 (385)
T KOG1034|consen 190 SLDGDR-IASCGMDHSLKL 207 (385)
T ss_pred cCCCCe-eeccCCcceEEE
Confidence 999995 899999998864
No 179
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=117.65 Aligned_cols=137 Identities=16% Similarity=0.230 Sum_probs=109.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCC--------------CceEEEEe------------ccCCCCCEEEEEEee
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHEN--------------GNVACYIP------------SIGGTNSVLGLCWLK 492 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~t--------------g~~v~~~~------------~~gH~~~V~~L~fsp 492 (606)
+|+|+.|-|-+...+..+..+|.+.++|.+. +....... ..-..+.|...+|+|
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 4889999998888999999999999997421 11111111 111245788999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE
Q 035500 493 KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL 571 (606)
Q Consensus 493 ~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~ 571 (606)
++.+||+.|.||.+||+|+.+.. .+..++ ..+...+|+|+|||+++++||+|--|.+|.+..++.+..
T Consensus 301 -DG~~LA~VSqDGfLRvF~fdt~e----------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 301 -DGKYLATVSQDGFLRIFDFDTQE----------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred -CCceEEEEecCceEEEeeccHHH----------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 78999999999999999999842 222232 246699999999999999999999999999999998888
Q ss_pred EcCCCCCCeEEEEEeC
Q 035500 572 FTDMHREPINVAKFSH 587 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP 587 (606)
=+ ||++.|+.|+|.|
T Consensus 370 Gq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQ-GHKSWVSVVAFDP 384 (636)
T ss_pred cc-ccccceeeEeecc
Confidence 77 8999999999996
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5.4e-09 Score=103.56 Aligned_cols=140 Identities=17% Similarity=0.293 Sum_probs=99.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++-..|+.+.++ +++.|+.++-||+++|+....+. ||++.|.++.--. ....++||++||++++||.++.+...
T Consensus 117 INam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~r--GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 117 INAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYR--GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred cceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEc--CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeE
Confidence 66788899666555 45589999999999999988766 9999999998743 34579999999999999999854211
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
..-..+.+-....+. ..|.+++.+ ..+++.|+. ..+.+|.+|..+++.+|+. ..++..+.|..+
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpi--pa~v~~v~F~~d 257 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPI--PARVHLVDFVDD 257 (325)
T ss_pred EeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEec--ccceeEeeeecc
Confidence 100001111111111 226666554 567776654 7899999999999998884 677888888643
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.04 E-value=1.6e-08 Score=103.57 Aligned_cols=148 Identities=20% Similarity=0.323 Sum_probs=115.0
Q ss_pred eeEEEE-cCCCCC-EEEEEeC-CCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCC
Q 035500 440 PRQFEY-NPSNPS-LMAFGTL-DGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNH 514 (606)
Q Consensus 440 V~slaf-sP~dg~-~LaSGs~-DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~ 514 (606)
+..+.+ ++ ++. .++..+. |+.+++||... ......+. +|...|..++|+| ++..+++++. |+.+++|+...
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 112 VSKLALSSP-DGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred eeeEEEECC-CcceEEeccCCCCccEEEEEecCCCeEEEEEe--cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC
Confidence 444455 77 555 5555445 99999999987 55555444 8999999999999 4557888885 99999999997
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~ 591 (606)
...+..+.+ ...|.+++|+|++. .+++++.|+.|++||.+.+.... .+. +|...+ ...|+|++.
T Consensus 188 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~- 254 (466)
T COG2319 188 ----------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGS- 254 (466)
T ss_pred ----------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCC-
Confidence 235556664 56699999999988 66666999999999999888877 566 688775 448999995
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
.+++++.|+.++.
T Consensus 255 ~~~~~~~d~~~~~ 267 (466)
T COG2319 255 LLASGSSDGTIRL 267 (466)
T ss_pred EEEEecCCCcEEE
Confidence 5779999999886
No 182
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=3.3e-09 Score=109.99 Aligned_cols=158 Identities=14% Similarity=0.187 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++-++||+ .-.-+|++..|-.|++||-.. +....++ ......|.+++|-|....-|+.|... -|++|.........
T Consensus 101 lr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred eeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 77789999 777889999999999999876 3333332 24456899999999776767766665 58999876532211
Q ss_pred cc--c--cCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 520 AD--A--RGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 520 ~~--l--~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.. + .....+....+|.+|++++|+++|..+++++. |..|.|||..++..+..... --+.+.-++|+|++.++||
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEE
Confidence 11 0 01123334456788999999999999999885 58899999999887666642 4578999999999998664
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
++.|+..|
T Consensus 256 -At~davfr 263 (445)
T KOG2139|consen 256 -ATCDAVFR 263 (445)
T ss_pred -ecccceee
Confidence 55566554
No 183
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.04 E-value=2e-09 Score=118.06 Aligned_cols=154 Identities=8% Similarity=0.053 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEE------EEeccCC---CCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVAC------YIPSIGG---TNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~------~~~~~gH---~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
|+.+.| +|...||++|. |+.|+|||+.+..... ...+..| .-.+.++.....+..++|+|. |++|.+
T Consensus 221 vTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ 297 (720)
T KOG0321|consen 221 VTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYF 297 (720)
T ss_pred eEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEE
Confidence 444445 37789999887 9999999997643321 1122233 234556666653444556665 999999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ---LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~---V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|++.... ..|+..+.++-. -..-..+|++..+++|+.|...++|.+.+.+.-..+..||...|++|+|.
T Consensus 298 ynm~s~s--------~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 298 YNMRSLS--------ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred EeccccC--------cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 9998853 345555554311 22233689999999999999999999998766444444899999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|....=++|++.|..++.
T Consensus 370 pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKI 387 (720)
T ss_pred cccCCCceeeccCcceEE
Confidence 876555888899988774
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=6e-09 Score=102.62 Aligned_cols=115 Identities=14% Similarity=0.229 Sum_probs=87.2
Q ss_pred eeEEEEcCCCCCEEEE--EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAF--GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaS--Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~ 514 (606)
|.+++|+| +++.+|+ |..++.|.+||++ ++.+..+. ...+..+.|+| .+++++.|+. .|.+.+||.+.
T Consensus 62 I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 62 IHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred eEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 78999999 7777654 4467899999997 55554432 45678999999 6788888764 46799999997
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEc
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~ 573 (606)
...+.+..+. .++.++|+|+|+++++++. |+.++||+.. |+.+....
T Consensus 135 ----------~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 135 ----------KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ----------CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 3455555544 4789999999999998864 7899999985 66655443
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=1.1e-08 Score=106.48 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEE-EE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVA-GS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaS-gS-~DgtIklWDl~~~~ 516 (606)
|.++.++. +.+++.=.+. |+|||+++.+.+.++... .+...+.++.+++. ..+++- ++ ..|.|.+||...
T Consensus 90 IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~n-- 162 (391)
T KOG2110|consen 90 ILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTIN-- 162 (391)
T ss_pred eEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEccc--
Confidence 45566654 5666655444 999999999999888765 56667878777763 345543 22 468999999988
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCceeEEEcCCC-CCCeEEEEEeCCCCeEE
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKN-VALYDINTEKPLQLFTDMH-REPINVAKFSHHSPLCL 593 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~-I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP~g~~LL 593 (606)
-.++..+. |++++.+++||++|.++||+|+.|+ ||++++.+|+.+.+|..|. ...|.+++|+|++++ +
T Consensus 163 --------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-L 233 (391)
T KOG2110|consen 163 --------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-L 233 (391)
T ss_pred --------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-E
Confidence 45676676 6678999999999999999999887 7899999999999999664 357899999999995 6
Q ss_pred EEEeCCCeEEEc
Q 035500 594 LLLHLTTMSRCG 605 (606)
Q Consensus 594 aTgS~DgtIRc~ 605 (606)
+++|..++|+.+
T Consensus 234 ~~sS~TeTVHiF 245 (391)
T KOG2110|consen 234 AASSNTETVHIF 245 (391)
T ss_pred EEecCCCeEEEE
Confidence 777777888764
No 186
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.02 E-value=2.8e-09 Score=117.72 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=118.2
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
..|+.++||| |+.+|++.|.|+++.+|....+.. ..+. ...|+.-|++..|+| ++.+|+|+|+|++|++|....
T Consensus 573 LTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 573 LTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIK-DEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eEEEEEEECC-CCcEEEEeecCceEEeeeeecccc-hhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccC
Confidence 3489999999 999999999999999999754221 1222 458999999999999 567899999999999999887
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCC-ce----eEEE------cCCCCC
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTD-----DQFLASGYSKNVALYDINTE-KP----LQLF------TDMHRE 578 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-----~~LaSgs~Dg~I~IWDlrt~-k~----v~~l------~~gH~~ 578 (606)
.... - -..+...++..+|+.++|.|.. ..++.|-..|.|.+|..... +. ...+ ..+|.+
T Consensus 650 ~~d~--~---i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (764)
T KOG1063|consen 650 LRDK--Y---ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDS 724 (764)
T ss_pred chhh--h---hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHH
Confidence 4210 0 1112455567889999998752 36788888999999985411 11 0000 125788
Q ss_pred CeEEEEEeCCC---------CeEEEEEeCCCeEEEc
Q 035500 579 PINVAKFSHHS---------PLCLLLLHLTTMSRCG 605 (606)
Q Consensus 579 ~I~sV~fsP~g---------~~LLaTgS~DgtIRc~ 605 (606)
.|+.+.|.|.. ..-|+.|+.|..+|++
T Consensus 725 aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~ 760 (764)
T KOG1063|consen 725 AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIF 760 (764)
T ss_pred hhheeEeccccccccccccceeEEeeecccceeEEe
Confidence 99999999862 2347999999999975
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=117.83 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+-.|+| +|.-++++|.||.|++|.-. |....++. ....+|+|++|.|+..+.+++.+.--.|+ -+..
T Consensus 107 ~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GMLRStl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--pL~~----- 175 (737)
T KOG1524|consen 107 ISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GMLRSTVV--QNEESIRCARWAPNSNSIVFCQGGHISIK--PLAA----- 175 (737)
T ss_pred hhhcccCC-CCceeeeecCCceEEEEecc-chHHHHHh--hcCceeEEEEECCCCCceEEecCCeEEEe--eccc-----
Confidence 55667999 99999999999999999854 54443322 44568999999997666666655443333 3332
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..++.| +-|.++.|++.+++++|||.|-..++||.. |..+..-. +|.-+|++++|+|+. +++.+|.
T Consensus 176 -----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd~--~~~v~S~ 246 (737)
T KOG1524|consen 176 -----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPEK--DYLLWSY 246 (737)
T ss_pred -----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeecccc--ceeeeee
Confidence 2234556654 559999999999999999999999999986 44444444 578888888888883 4555654
No 188
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.00 E-value=2.2e-08 Score=107.42 Aligned_cols=155 Identities=16% Similarity=0.266 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|++|.+ +++ ++||.++|.|.||+..+.+...... .|.+.|.+++... + ..|+||+.|..|-.||-...+...
T Consensus 249 Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr-~-GtllSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 249 VLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLR-D-GTLLSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred EEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEec-C-ccEeecCccceEEecccccccccc
Confidence 88999999 774 6699999999999998777666554 9999999999985 3 578889999999999943321110
Q ss_pred ccc-------------------------------cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-----
Q 035500 520 ADA-------------------------------RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDI----- 563 (606)
Q Consensus 520 ~~l-------------------------------~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl----- 563 (606)
..+ .....+.++.|....+.++.||+.+.+++++.|+.+++|+-
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~w 402 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEW 402 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeE
Confidence 000 00111222334455777777777777788888888888762
Q ss_pred ---------------------------------CCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 564 ---------------------------------NTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 564 ---------------------------------rt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++...+..-. ...++++++|+|+|.+ +|.||.|+.|-
T Consensus 403 t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~-lAvgs~d~~iy 472 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAF-LAVGSHDNHIY 472 (626)
T ss_pred EEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCE-EEEecCCCeEE
Confidence 2211112222 2578999999999995 89999998774
No 189
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.3e-08 Score=106.44 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=126.3
Q ss_pred EEEEcCCCCCEEEEEeCC--CcEEEEECCCCceEEEEeccCC-----CC--CEEEEEEeeCC-CCEEEEEECCCeEEEEe
Q 035500 442 QFEYNPSNPSLMAFGTLD--GEVIVINHENGNVACYIPSIGG-----TN--SVLGLCWLKKY-PSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 442 slafsP~dg~~LaSGs~D--GtVrIWDi~tg~~v~~~~~~gH-----~~--~V~~L~fsp~~-~~~LaSgS~DgtIklWD 511 (606)
.+.-+|.++.++|+||.. ..++|||.+..+.+..-+.... .- .++++.|.+.. ...|++++.-+.+++||
T Consensus 153 ~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 153 DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred eeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEec
Confidence 344677788999999999 8999999998866654432221 12 24578887631 57899999999999999
Q ss_pred CCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCC
Q 035500 512 LNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL-FTDMHREPINVAKFSHHS 589 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g 589 (606)
.+++ +.|+..+.. ..+++++..-|+++.+++|..-+.+..+|+|+++.... +. +-++.|+++.-+|.+
T Consensus 233 t~~q---------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 233 TRHQ---------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTH 302 (412)
T ss_pred Cccc---------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC-CccCCcceEEEcCCC
Confidence 9985 678888885 67799999999999999999999999999999998776 55 789999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+ ++|+||-|+.+|+
T Consensus 303 ~-~las~GLDRyvRI 316 (412)
T KOG3881|consen 303 P-VLASCGLDRYVRI 316 (412)
T ss_pred c-eEEeeccceeEEE
Confidence 8 6999999999997
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=105.52 Aligned_cols=129 Identities=15% Similarity=0.225 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEE----CCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGS----DSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS----~DgtIklWDl~~~~~~~~~l~ 523 (606)
.+..+.+|+.||+||+||+++......+...+|. .+-.+++-.- +.+.+++|+ .|-.+.+||++...
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q------- 154 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ------- 154 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-------
Confidence 5678999999999999999987777666666666 3444555442 456777774 57789999999852
Q ss_pred CCcceEEee--cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCeEEEEEeCCC
Q 035500 524 GNSSVATYY--DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP----LQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 524 ~~~~i~t~~--~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~----v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..+. |++.|+++.|||.. ++++|||.||-|.++|+..... +.++. |...|..+.|...+
T Consensus 155 --q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 155 --QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSIHLIGWLSKK 223 (376)
T ss_pred --chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--ccceeeeeeeecCC
Confidence 3355554 67779999999997 7999999999999999986522 44444 67889999998766
No 191
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.4e-09 Score=115.47 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++.||| ...+++.++. ..|+|||+..+..+... ......|..++.+| ++..|+.||.|+.+..+|+.-.
T Consensus 569 vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL--~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls---- 639 (733)
T KOG0650|consen 569 VQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKL--LTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS---- 639 (733)
T ss_pred eeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHH--hcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC----
Confidence 67788999 4456666664 56999999876665532 24455688999998 6678999999999999999874
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECC------CC---ceeEEEcCCCCCC----eEEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDIN------TE---KPLQLFTDMHREP----INVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr------t~---k~v~~l~~gH~~~----I~sV~f 585 (606)
..|.+++.+| ..+++|+||+.=.+|++|+.||++.++--+ .. -++..++ ||... |..+.|
T Consensus 640 -----skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 640 -----SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIW 713 (733)
T ss_pred -----cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeecc
Confidence 4577777765 559999999998999999999999988433 22 2356777 78766 999999
Q ss_pred eCCCCeEEEEEeCCCeEEEc
Q 035500 586 SHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc~ 605 (606)
||..+|+ .+++.|++||..
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999995 577789999964
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.92 E-value=7.6e-09 Score=105.92 Aligned_cols=155 Identities=9% Similarity=0.052 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+.++|+| ..+.|++++.|..-+||.. ..++..++..+..|.++++++.|+| .+++|+.||.-..|.||-++....-
T Consensus 58 vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 58 VTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred eeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccce
Confidence 78899999 8889999999999999998 6677777777778999999999999 7799999999999999988874220
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-----C-------------CceeEEEcCCCCCCe
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN-----T-------------EKPLQLFTDMHREPI 580 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-----t-------------~k~v~~l~~gH~~~I 580 (606)
=-....+.| ..+.|++++|||.+-++++||.|+.++++..- . |+.+.++. ...+.|
T Consensus 136 WVsKhikkP-----irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwv 209 (361)
T KOG1523|consen 136 WVSKHIKKP-----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWV 209 (361)
T ss_pred ehhhhhCCc-----cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCce
Confidence 000000122 24559999999999999999999999997432 1 12233332 346789
Q ss_pred EEEEEeCCCCeEEEEEeCCCeEE
Q 035500 581 NVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+.|+|+|.. ++=.+.|.++-
T Consensus 210 h~v~fs~sG~~-lawv~Hds~v~ 231 (361)
T KOG1523|consen 210 HGVLFSPSGNR-LAWVGHDSTVS 231 (361)
T ss_pred eeeEeCCCCCE-eeEecCCCceE
Confidence 99999999985 77777787764
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=5.7e-08 Score=99.55 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=112.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
|+.+.+.+ +.+++.- .++|+||... +-+....+..........+++-.. +...| +-|-.-|.|+|-|+.....
T Consensus 97 I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 97 IKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred eeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcCc
Confidence 66777866 4666654 5679999987 445555555444344444444332 21222 2344678999999988543
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCceeEEEcCCC-CCCeEEEEEeCCCCeEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKN-VALYDINTEKPLQLFTDMH-REPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~-I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP~g~~LLaT 595 (606)
..|.....|.+.|.+|+.+.+|..+||+|..|+ |||||.++|+.++++..|- ...|++++|||++.+ +|.
T Consensus 172 -------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-Lav 243 (346)
T KOG2111|consen 172 -------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-LAV 243 (346)
T ss_pred -------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-EEE
Confidence 234555557788999999999999999999988 7899999999999998663 467999999999996 889
Q ss_pred EeCCCeEEEc
Q 035500 596 LHLTTMSRCG 605 (606)
Q Consensus 596 gS~DgtIRc~ 605 (606)
+|..||++++
T Consensus 244 sSdKgTlHiF 253 (346)
T KOG2111|consen 244 SSDKGTLHIF 253 (346)
T ss_pred EcCCCeEEEE
Confidence 9999999864
No 194
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.91 E-value=4.3e-08 Score=105.30 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++.+| +.++++|++.|+.|++|+ ..+...+... ..++.++.|+|. + .++.|+..|...+.|.++
T Consensus 371 lwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~----- 437 (626)
T KOG2106|consen 371 LWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPS-G-VVAVGTATGRWFVLDTET----- 437 (626)
T ss_pred eeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCc-c-eEEEeeccceEEEEeccc-----
Confidence 56789999 778999999999999999 4555554432 457899999994 3 899999999999999887
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..-....+++.|+++|+|.+||.|+.|+.|+||-+.. +.........|.++|+.+.|++++++ +.+-|.
T Consensus 438 -----~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~ 511 (626)
T KOG2106|consen 438 -----QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSG 511 (626)
T ss_pred -----ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccC
Confidence 23344444577899999999999999999999999998874 44444444345689999999999996 667776
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|--+
T Consensus 512 d~ei 515 (626)
T KOG2106|consen 512 DYEI 515 (626)
T ss_pred ceEE
Confidence 6543
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.91 E-value=1.5e-08 Score=113.75 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=118.8
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE------EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..+++++|.|.+++.++.|+.+|.|.-=+-...+... ......|.+.|+.+.++|-....++|++ |.++++|.
T Consensus 348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs 426 (555)
T KOG1587|consen 348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWS 426 (555)
T ss_pred cceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEecc
Confidence 3488999999999999999999998873332211111 1123478899999999997777777777 99999999
Q ss_pred CCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeC
Q 035500 512 LNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP 587 (606)
-... ..|+..+..+ ..|++++|+|.. ..|+++..||.+.+||+... .++.... .+....+.+.|++
T Consensus 427 ~~~~---------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 427 EDVI---------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSP 496 (555)
T ss_pred ccCC---------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCC
Confidence 7732 3466666654 449999999997 48888888999999999964 5566666 3567788899999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
.|+ +++.|...|.++.
T Consensus 497 ~g~-~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 497 NGK-LLAVGDANGTTHI 512 (555)
T ss_pred CCc-EEEEecCCCcEEE
Confidence 888 6899999997764
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.4e-08 Score=116.59 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=112.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCC--EEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNS--VLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~--V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|+++.-+-..|+.+|+|..||.||+||.+..... .......|... |..+.+.+.+-..|+|||.||.|++||++...
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 5555544456899999999999999997753221 11123477766 99999998665679999999999999999841
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV~fsP~g~ 590 (606)
. .+.. .-+..++..+.++++..|++..++|+|+. +.|+||++...+. ..+. ....+.+.|++|||...
T Consensus 1291 ~-e~~~---~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1291 K-ETFL---TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred c-cccc---eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhH
Confidence 1 1100 01112222345999999999999999999 9999999974332 2221 12346789999999977
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++|+|+.|.+|-+
T Consensus 1365 -llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1365 -LLAAGSADSTVSI 1377 (1387)
T ss_pred -hhhhccCCceEEE
Confidence 6888999988753
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.9e-08 Score=115.41 Aligned_cols=150 Identities=15% Similarity=0.268 Sum_probs=112.6
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
++|..+.|.+ .++|.-..|||||......+..++. +....|+++.-+-..++.+++|-.||.|++||.+....
T Consensus 1171 ~dWqQ~~G~L-l~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~----- 1243 (1387)
T KOG1517|consen 1171 VDWQQQSGHL-LVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP----- 1243 (1387)
T ss_pred eehhhhCCeE-EecCCeeEEEEEecccceeEeeccc-CCCccceeecccccCCceEEEeecCCceEEeecccCCc-----
Confidence 5788766644 4555589999999998777776654 45667888877655678999999999999999998643
Q ss_pred cCCcceEEeecC-CC--eEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--eEEEcCCCC---CCeEEEEEeCCCCeEE
Q 035500 523 RGNSSVATYYDF-EQ--LTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--LQLFTDMHR---EPINVAKFSHHSPLCL 593 (606)
Q Consensus 523 ~~~~~i~t~~~~-~~--V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~---~~I~sV~fsP~g~~LL 593 (606)
...+..++.| .. |..+++.+.| ..+++|+.||.|++||+|.... ..... .|. +.++++..|++.+ ++
T Consensus 1244 --ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yGs~lTal~VH~hap-ii 1319 (1387)
T KOG1517|consen 1244 --DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYGSALTALTVHEHAP-II 1319 (1387)
T ss_pred --cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee-eccccCccceeeeeccCCC-ee
Confidence 3456666633 33 8999999987 4699999999999999998422 22222 232 3599999999988 78
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|+|+. +.|++
T Consensus 1320 AsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1320 ASGSA-QLIKI 1329 (1387)
T ss_pred eecCc-ceEEE
Confidence 99987 66654
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.89 E-value=6.4e-09 Score=109.17 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC--------C------CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE--------N------GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~--------t------g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|+++.|+| +|+++|+|+++|+|.+|-.. + ...+....+.+|...|+.++|+| ++..+++|+.|.
T Consensus 68 VN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dn 145 (434)
T KOG1009|consen 68 VNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDN 145 (434)
T ss_pred eEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccc
Confidence 67788999 99999999999999999865 2 11223334568999999999999 678999999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP 568 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~ 568 (606)
++++||+..+ .....+.. ..-|..++|.|.++++++-|.|...+.+++...+.
T Consensus 146 s~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 146 SVRLWDVHAG----------QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eEEEEEeccc----------eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 9999999984 34555554 45599999999999999999999888877765443
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=5.2e-08 Score=101.26 Aligned_cols=149 Identities=14% Similarity=0.167 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceE--------EEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVA--------CYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v--------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dgt 506 (606)
|+|++|-|..+.-++.|+..| |.||.... ++.+ ..++..|| ..|++++|.+ ++..++++| .|..
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSS 219 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcce
Confidence 889999998888999999888 89998542 1211 12233355 6899999998 566777776 5779
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKF 585 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~f 585 (606)
|.|||..++. ..|+. ..+-+.+.-+.|+|++.++++++-|+..++|...... ..+-.. -++.|....|
T Consensus 220 i~iWdpdtg~--------~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacW 288 (445)
T KOG2139|consen 220 IMIWDPDTGQ--------KIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACW 288 (445)
T ss_pred EEEEcCCCCC--------ccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec--cCCceeeeee
Confidence 9999999853 22332 3455668889999999999999999999999655432 222222 2469999999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
+|.|.+++.+++...++
T Consensus 289 spcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRL 305 (445)
T ss_pred cCCCCEEEEEEcCCceE
Confidence 99999999888776544
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.87 E-value=1.4e-09 Score=121.82 Aligned_cols=144 Identities=12% Similarity=0.146 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.|..|.. .|.++++|+.|..|+||.++++.+..... ||.+.++.++.+. +...++++|.|..|++|-+..
T Consensus 193 Vyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r--Ghs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~----- 263 (1113)
T KOG0644|consen 193 VYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR--GHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD----- 263 (1113)
T ss_pred eeeeeecc-ccceEeecCccceeeeeeccchhhhccCC--CCccccchhccch-hhhhhhhcccCceEEEEecCC-----
Confidence 77888988 99999999999999999999999887655 9999999999986 556799999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE---EEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ---LFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~---~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..|+..+.+| ++|++|+|+|-. +++.||++++||.+-...+. -....-..-+-++.|-..+.. ++|
T Consensus 264 -----~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~T 333 (1113)
T KOG0644|consen 264 -----GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR-FLT 333 (1113)
T ss_pred -----CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc-ccc
Confidence 4577777755 679999999975 88999999999999221111 011011234455555555543 566
Q ss_pred EeCCCeE
Q 035500 596 LHLTTMS 602 (606)
Q Consensus 596 gS~DgtI 602 (606)
|+.|+..
T Consensus 334 gs~d~ea 340 (1113)
T KOG0644|consen 334 GSRDGEA 340 (1113)
T ss_pred ccCCccc
Confidence 6666654
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=6e-09 Score=112.57 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=98.1
Q ss_pred eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCC-eEEEEEccCC--CEEEEE
Q 035500 477 PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQ-LTSVHVNSTD--DQFLAS 552 (606)
Q Consensus 477 ~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~-V~sV~~sp~g--~~LaSg 552 (606)
++.||.+-|.++.|+. ++.+|+|||+|-.+.|||.-. .+++..+. +|.+ |.++.|-|.. .+++||
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 4569999999999997 789999999999999999886 44566555 4444 9999999974 589999
Q ss_pred eCCCcEEEEECCC----------CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 553 GYSKNVALYDINT----------EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 553 s~Dg~I~IWDlrt----------~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..|..|+++|+.. .++.+.+. .|...|..++-.|++++.|-++|+||+||
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCccee
Confidence 9999999999994 23455566 69999999999999999999999999997
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.86 E-value=6.3e-08 Score=112.76 Aligned_cols=150 Identities=16% Similarity=0.233 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--Cc---eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GN---VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~---~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+..++.++.++.+++|||.||+||+||... |. .........-.+.+..+...+ ++..+|.++.||.|.+.++..
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEccc
Confidence 446778776879999999999999999753 11 111112222456788888887 678899999999999999987
Q ss_pred CCCCc--------ccc---------------cCC---------cceEEe-----------e---cCCCeEEEEEccCCCE
Q 035500 515 IPPKV--------ADA---------------RGN---------SSVATY-----------Y---DFEQLTSVHVNSTDDQ 548 (606)
Q Consensus 515 ~~~~~--------~~l---------------~~~---------~~i~t~-----------~---~~~~V~sV~~sp~g~~ 548 (606)
..... ... .+. ..+..+ + .|+.|++++.+|.+++
T Consensus 1130 ~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1130 YNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred cccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence 21100 000 000 001111 1 2566999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 549 FLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 549 LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+++|+..|.+.+||+|-+.++..+..+|..+|+.+..+|..+
T Consensus 1210 lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC
Confidence 999999999999999999999988888889999999887655
No 203
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=104.21 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=86.1
Q ss_pred EEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 485 VLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 485 V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
..++.|++ .+.+||.|..||.|-+||+.+ ...-+.+.. -.+|++++|+++|..++|+|.|..|.+||+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 77899998 779999999999999999998 334445554 467999999999999999999999999999
Q ss_pred CCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 564 NTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 564 rt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..|.+++.+. ..++|+.+.|+|.....++++-
T Consensus 95 ~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 95 LKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred cCCCceeEEE--ccCccceeeeccccCCeEEEEE
Confidence 9999999888 4799999999998776555443
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.83 E-value=3.9e-07 Score=96.15 Aligned_cols=156 Identities=11% Similarity=0.113 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~ 516 (606)
+..++++| +++++++++ .++.|.+|++. ++.... .......+....++|+| +++.+++++ .++.|.+|++....
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTF-AAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEE-eeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 56788999 888887664 58899999986 344321 11112334567899998 556666665 48899999997532
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeE-----EEcCCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQ-----LFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~-----~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ...+....+......++++|++++++++ ..++.|.+||+.+...+. ............+.|+|+++
T Consensus 114 ~~------~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 114 IP------VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CC------CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence 11 1122333344456788899999877555 466999999998632221 11111224467899999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
+++++...+++|++
T Consensus 188 ~lyv~~~~~~~v~v 201 (330)
T PRK11028 188 YAYCVNELNSSVDV 201 (330)
T ss_pred EEEEEecCCCEEEE
Confidence 88777776777764
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=7.5e-09 Score=110.69 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=128.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..+.|+. .|..+++||.|.+|.+||+..++....+. .||...|..-.|.|.. ...+++++.||.+++=.+...+..
T Consensus 145 VntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 145 VNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred cceeeecc-cCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 78889998 99999999999999999999988877765 3999999999998854 356999999999998776653221
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEE--cCCCCC---CeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLF--TDMHRE---PINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l--~~gH~~---~I~sV~fsP~g~~L 592 (606)
....+...|+++|..++.-|+. ..|.|+|.|+.+.-.|++.+.+...+ ...+.. ..++++.+|...+.
T Consensus 223 ------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 223 ------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 2234556688999999999997 58999999999999999987663222 223444 67899999999999
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|+|+.|..+|.
T Consensus 297 faVgG~dqf~Rv 308 (559)
T KOG1334|consen 297 FAVGGSDQFARV 308 (559)
T ss_pred cccCChhhhhhh
Confidence 999999988774
No 206
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=9.3e-08 Score=104.56 Aligned_cols=138 Identities=14% Similarity=0.194 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
+...+|-|...|.|.+|+...|+....+..-+|.+.|.++.|+. +-..|.|++.|+.+..|+... ...+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~----------~~~~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE----------KVII 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc----------ceee
Confidence 56688899999999999999999988888779999999999985 667899999999999999998 4556
Q ss_pred EEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC-----CCeEEEEEeCCC
Q 035500 529 ATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH-----SPLCLLLLHLTT 600 (606)
Q Consensus 529 ~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~-----g~~LLaTgS~Dg 600 (606)
+.+... ..+.+++.+|+|..++++| +.|++||+++++.+..|+ ||.++|+++.|--. |.+++.+...+.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeecccccc
Confidence 677754 4499999999999999988 679999999999999999 89999999999876 777776655443
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=6.4e-09 Score=110.64 Aligned_cols=143 Identities=16% Similarity=0.218 Sum_probs=114.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|..+.|-| .--+||+++..|-++.-|+.+|+.+..+. ...+.+..++-+|.+ ..+-.|...|+|.+|....
T Consensus 211 ~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~s---- 282 (545)
T KOG1272|consen 211 RVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNS---- 282 (545)
T ss_pred chhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcCCcc-ceEEEcCCCceEEecCCCC----
Confidence 467788999 66799999999999999999999988665 456678888888854 6788999999999999888
Q ss_pred cccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+.|+. .+.|.++|.+|+++++|.++||+|.|..++|||+|+-..+.+... ..+...++||..| ++|.|-
T Consensus 283 ------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~ 352 (545)
T KOG1272|consen 283 ------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSY 352 (545)
T ss_pred ------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeec
Confidence 34444 555788999999999999999999999999999998776665552 3456678887655 455444
Q ss_pred CC
Q 035500 598 LT 599 (606)
Q Consensus 598 ~D 599 (606)
+|
T Consensus 353 G~ 354 (545)
T KOG1272|consen 353 GD 354 (545)
T ss_pred CC
Confidence 33
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.9e-07 Score=102.81 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~ 515 (606)
+.+.+|+| +++.+|.++.+ .+|++||+.+++........+| ...++|+| ++..|+.+ +.+|.+.||.+...
T Consensus 206 v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 206 LMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CCCEEEEEEecCCcEEEEEEECC
Confidence 66788999 99999988754 3699999988765433223344 34689999 55666655 57887777654321
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. .. ...+. +...+.+..|+|+|+.++.++ .++...||++... .....+. +.. ....|+|+|.++
T Consensus 281 ~--------~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 281 G--------GT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG--YSAQISADGKTL 347 (429)
T ss_pred C--------CC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC--CCccCCCCCCEE
Confidence 1 11 22233 344578899999998766554 5788888877542 2222222 333 457899999975
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+++ +.+++++
T Consensus 348 a~~-~~~~i~~ 357 (429)
T PRK01742 348 VMI-NGDNVVK 357 (429)
T ss_pred EEE-cCCCEEE
Confidence 444 4465544
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.75 E-value=9.9e-08 Score=103.11 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=96.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+|++|.|...+.+.+.+ |.+.|=.+.-... .++...|++-|.++.|++ ..++++|||+|-..++||-...
T Consensus 148 v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k--~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~---- 218 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG--GHISIKPLAANSK--IIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA---- 218 (737)
T ss_pred eEEEEECCCCCceEEecC--CeEEEeecccccc--eeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc----
Confidence 889999995555555444 3355544443222 334569999999999998 4589999999999999998872
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
....+-.|..+|++|+|+|+ ..++.+|. ++++ +..+..+.|..++|+|+|.. ++.|...
T Consensus 219 ------~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ-~a~gt~~ 277 (737)
T KOG1524|consen 219 ------NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQ-ATCGTST 277 (737)
T ss_pred ------ccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCce-eeccccC
Confidence 22223346788999999999 77777775 3444 44456788999999999996 5666655
Q ss_pred CeE
Q 035500 600 TMS 602 (606)
Q Consensus 600 gtI 602 (606)
|.+
T Consensus 278 G~v 280 (737)
T KOG1524|consen 278 GQL 280 (737)
T ss_pred ceE
Confidence 544
No 210
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.74 E-value=1.4e-07 Score=95.82 Aligned_cols=139 Identities=10% Similarity=0.059 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
..++.|++ .+..++++-.+|.+.+-+.............+|.-+++-..|+..+++.+++||+|+.+..||++.++
T Consensus 124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 45788999 77789999999999977665555555444569999999999998888999999999999999999632
Q ss_pred ccccCCcceE--EeecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVA--TYYDFEQLTSVHVNST-DDQFLASGYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~--t~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..+. ...|+..|.+|.-+|. +.++++|++|-.|++||.| .++++..-. -.+.|+.++++|.-.
T Consensus 200 ------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 200 ------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIF 266 (339)
T ss_pred ------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhh
Confidence 2222 2225677999988876 4699999999999999999 577776555 358999999998643
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.74 E-value=8.9e-08 Score=103.63 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=115.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecc--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc----c--
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSI--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV----A-- 520 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~----~-- 520 (606)
.+--+..|-.-|.|.+.|....+..+.+... -.+..|+++.|-|.++.+++.+-.+|.+.++|........ .
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 5666778888899999887653322222211 2257899999999888899999999999999875432110 0
Q ss_pred ------------cccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 521 ------------DARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 521 ------------~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
......|+..+. ....|+..+|+|+|.++|+.|.||.+||+|..+.+.+-.++ .--+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcC
Confidence 001134555555 34679999999999999999999999999999988877776 3558899999999
Q ss_pred CCCeEEEEEeCCCeEE
Q 035500 588 HSPLCLLLLHLTTMSR 603 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIR 603 (606)
||++ ++||++|-.|.
T Consensus 343 DGKy-IvtGGEDDLVt 357 (636)
T KOG2394|consen 343 DGKY-IVTGGEDDLVT 357 (636)
T ss_pred CccE-EEecCCcceEE
Confidence 9996 78999997765
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.72 E-value=1e-07 Score=109.67 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=116.3
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
+.+++ +.=++++|+.-|.|.+|+... ..... ...||.+.+..+.|+. ++++++|+|+|.++++|++.+.+.
T Consensus 139 ~g~s~-~~~~i~~gsv~~~iivW~~~~-dn~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~----- 209 (967)
T KOG0974|consen 139 IGDSA-EELYIASGSVFGEIIVWKPHE-DNKPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREV----- 209 (967)
T ss_pred EeccC-cEEEEEeccccccEEEEeccc-cCCcc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccc-----
Confidence 34566 667999999999999999872 22222 3559999999999996 789999999999999999998532
Q ss_pred cCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 523 RGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR-EPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~-~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
....-|.|...|+.+.++|. .++|+|.|-+.++|+.+ ++.+.++. +|. ..|+.++..+... +.+|++.|+.
T Consensus 210 ---~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~-~~vT~g~Ds~ 281 (967)
T KOG0974|consen 210 ---LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVI-IKVTGGNDST 281 (967)
T ss_pred ---cCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh-hhhhcceeEEEEcCCce-EEEeeccCcc
Confidence 12345666677999999987 99999999999999665 44444676 565 5789999887765 6899999999
Q ss_pred EEEc
Q 035500 602 SRCG 605 (606)
Q Consensus 602 IRc~ 605 (606)
+|..
T Consensus 282 lk~~ 285 (967)
T KOG0974|consen 282 LKLW 285 (967)
T ss_pred hhhh
Confidence 8864
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=6.6e-07 Score=98.53 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=98.0
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--EEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt--IklWDl~~ 514 (606)
+.+.+|+| ||+.|+..+. +..|.+||+.+++... + ..+.+.+...+|+|++...+++.+.++. |.+||+.+
T Consensus 204 v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l--~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 204 VLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-V--GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred eEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-e--ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 67788999 8998888764 4689999999887643 2 2456677889999954344567777776 66667766
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+.. ........|+|+|+.++.++. + ..|.+||+..++..+... +...+....|+|+|.
T Consensus 280 ~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 280 GT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRGD 346 (435)
T ss_pred Cc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--CCCcccCeEECCCCC
Confidence 31 222332 233567899999998776664 3 368888987765543332 345667789999999
Q ss_pred eEEEEEeC
Q 035500 591 LCLLLLHL 598 (606)
Q Consensus 591 ~LLaTgS~ 598 (606)
+++.+...
T Consensus 347 ~ia~~~~~ 354 (435)
T PRK05137 347 LIAFTKQG 354 (435)
T ss_pred EEEEEEcC
Confidence 87665543
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.9e-07 Score=101.76 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=122.7
Q ss_pred cccCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc----CCCC-----CE
Q 035500 415 SSAWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI----GGTN-----SV 485 (606)
Q Consensus 415 ~~~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~----gH~~-----~V 485 (606)
.-.+.|...+.+.+ |. +.++.+++ ...+||+|+.||.|..||..+...+..+... .|.+ .|
T Consensus 162 LEqGrfL~P~~~~~-----~~----lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~sv 231 (703)
T KOG2321|consen 162 LEQGRFLNPFETDS-----GE----LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSV 231 (703)
T ss_pred cccccccccccccc-----cc----ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcc
Confidence 34566666665321 22 67888999 5569999999999999999887666655432 2333 49
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec--CCCeEEEEEccCC--CEEEEEeCCCcEEEE
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD--FEQLTSVHVNSTD--DQFLASGYSKNVALY 561 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g--~~LaSgs~Dg~I~IW 561 (606)
+++.|.. ++-.++.|+.+|.+.|||++. +.|+..-.| ..+|..+.|.+.+ +.++|.. ...++||
T Consensus 232 Tal~F~d-~gL~~aVGts~G~v~iyDLRa----------~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiW 299 (703)
T KOG2321|consen 232 TALKFRD-DGLHVAVGTSTGSVLIYDLRA----------SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIW 299 (703)
T ss_pred eEEEecC-CceeEEeeccCCcEEEEEccc----------CCceeecccCCccceeeecccccCCCceEEecc-hHHhhhc
Confidence 9999985 577899999999999999999 556666665 4569999998874 4555553 4789999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
|-.+|++...++. +..++.+++-|++. ++.+|-.+..+
T Consensus 300 d~~~Gk~~asiEp--t~~lND~C~~p~sG-m~f~Ane~~~m 337 (703)
T KOG2321|consen 300 DECTGKPMASIEP--TSDLNDFCFVPGSG-MFFTANESSKM 337 (703)
T ss_pred ccccCCceeeccc--cCCcCceeeecCCc-eEEEecCCCcc
Confidence 9999999988883 56699999999988 56666665543
No 215
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.68 E-value=8.3e-07 Score=93.66 Aligned_cols=160 Identities=10% Similarity=0.033 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~ 516 (606)
+..++++| +++++++++ .++.|.+|++.+ +..........+.....+++++|+ ++++ ++...++.|.+||+....
T Consensus 82 p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCC
Confidence 55788999 888777776 489999999864 322111111123345678889995 4555 566677999999997632
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC--Cc--eeEEEcC--C---CCCCeEEEEEe
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINT--EK--PLQLFTD--M---HREPINVAKFS 586 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt--~k--~v~~l~~--g---H~~~I~sV~fs 586 (606)
.. ... ...............+.|+|++++++++.. +++|.+||+.. ++ .+..+.. . +......+.|+
T Consensus 160 ~l-~~~--~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 160 HL-VAQ--EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred cc-ccc--CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 10 000 000111122334678899999998887765 89999999983 32 2333321 0 11223468899
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++++++++...+++|.+
T Consensus 237 pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 237 PDGRHLYACDRTASLISV 254 (330)
T ss_pred CCCCEEEEecCCCCeEEE
Confidence 999988877666777654
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.68 E-value=1e-08 Score=115.22 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=98.0
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCC
Q 035500 478 SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 478 ~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg 556 (606)
+.||..+|+|+.|.. .+.++++|+.|.-+|||...+ ..+..+..+|.. |+.++.+...-+++++|.|.
T Consensus 186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDK 254 (1113)
T ss_pred HHhhhhheeeeeecc-ccceEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhhhhhhcccCc
Confidence 459999999999996 678999999999999999777 457777887655 99999988888999999999
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++|-++.+.++.++. ||++.|++++|+|-. +++.||++|.
T Consensus 255 vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~ 296 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRI 296 (1113)
T ss_pred eEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEe
Confidence 99999999999999999 899999999999864 6788998875
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.9e-06 Score=94.94 Aligned_cols=144 Identities=16% Similarity=0.061 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGT---LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs---~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~Dg--tIklWDl~ 513 (606)
+.+.+|+| ||+.+|..+ .+..|.+||+.+|+........+ .+...+|+|+ +..|+ +.+.+| .|.+||+.
T Consensus 201 ~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPD-G~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 201 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCC-CCEEEEEEcCCCCcEEEEEECC
Confidence 56788999 999888754 34579999998886544332223 3456899995 45554 445555 58888987
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
++. ......+...+....|+|+|+.++.++.+ +. |..+|+.+++.. .+. .+........|+|+|.
T Consensus 276 tg~----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 276 SGQ----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGK 343 (429)
T ss_pred CCC----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEECCCCC
Confidence 632 22222234457889999999988776654 44 445577666543 333 2344566789999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++.++..++
T Consensus 344 ~Ia~~~~~~g 353 (429)
T PRK03629 344 FMVMVSSNGG 353 (429)
T ss_pred EEEEEEccCC
Confidence 8766665443
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=96.70 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=112.4
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC----CEEEEEECCCeEEEEeCC
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP----SKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~----~~LaSgS~DgtIklWDl~ 513 (606)
.|+.+++|.. ||+++|.|-.||+|.|-+......+..-.--|..++|++++|+|..+ ..++......|+.++.+.
T Consensus 133 ~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 133 SRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 4588899998 99999999999999999754333332222235678999999998542 345566666666666655
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
...-. + -+++ .-.-.++++-+.|+++..||.|+.+.+| .|.|-.+-++. .....|++|+..|++++ +
T Consensus 212 G~~Ig------k--~r~L--~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg-~~D~WIWtV~~~PNsQ~-v 278 (1081)
T KOG1538|consen 212 GKQIG------K--DRAL--NFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVG-EQDSWIWTVQAKPNSQY-V 278 (1081)
T ss_pred ceeec------c--cccC--CCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeecc-ccceeEEEEEEccCCce-E
Confidence 42100 0 0001 1124678889999999999999999999 56676666766 36789999999999996 8
Q ss_pred EEEeCCCeEEEc
Q 035500 594 LLLHLTTMSRCG 605 (606)
Q Consensus 594 aTgS~DgtIRc~ 605 (606)
+.|..||+|-|.
T Consensus 279 ~~GCqDGTiACy 290 (1081)
T KOG1538|consen 279 VVGCQDGTIACY 290 (1081)
T ss_pred EEEEccCeeehh
Confidence 899999999884
No 219
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.59 E-value=1.7e-06 Score=93.99 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
+.+.+|+| +++++|.++.+ ..|++||+.+++..... .+.+.+.+.+|+|++...+++.+.++ .|.+||+.+
T Consensus 192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 55677999 99999987754 48999999988654322 34556778999995433445666555 588888876
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS-K--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D-g--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ...+. +........|+|+|+.++.++.. + .|.+||+.+++... +. .+...+....|+|++.
T Consensus 268 ~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~-~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 268 KQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LT-FRGGYNASPSWSPDGD 334 (417)
T ss_pred CC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee-cCCCCccCeEECCCCC
Confidence 32 12222 22334567899999887766543 3 68888888776543 33 2456677889999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++.++...+
T Consensus 335 ~i~~~~~~~~ 344 (417)
T TIGR02800 335 LIAFVHREGG 344 (417)
T ss_pred EEEEEEccCC
Confidence 8666655443
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1e-06 Score=97.05 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=93.2
Q ss_pred eEEEEcCCCCCEEEEEe-CCCcEEEE--ECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCCeEEEEeCCCCC
Q 035500 441 RQFEYNPSNPSLMAFGT-LDGEVIVI--NHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs-~DGtVrIW--Di~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~DgtIklWDl~~~~ 516 (606)
...+|+| |++.|+.++ .+|.+.|| |..++.... + ..|...+....|+|+ +..++ ++..+|...+|++....
T Consensus 251 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l--t~~~~~~~~~~wSpD-G~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 251 GAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQ-L--TSGAGNNTEPSWSPD-GQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEe-e--ccCCCCcCCEEECCC-CCEEEEEECCCCCceEEEEECCC
Confidence 3578999 998888764 68876665 666665432 2 356667889999995 56554 44568899999876532
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
. ....+.+.. ...+|+|+|+.++.++.++ +..||+.+++...... .+ ....+.|+|+|..+ +.+
T Consensus 326 ~---------~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i-~~~ 389 (429)
T PRK01742 326 G---------GASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMI-IYS 389 (429)
T ss_pred C---------CeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEE-EEE
Confidence 1 111222222 4578999999998887765 5569999887653333 22 23568899999964 555
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
+.++.+
T Consensus 390 s~~g~~ 395 (429)
T PRK01742 390 STQGLG 395 (429)
T ss_pred EcCCCc
Confidence 556544
No 221
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.56 E-value=1.4e-08 Score=98.90 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred hccccCcccchh----hhcccchhhhhccCCCCCCCcceecccccC--CCCCCCCcccccc-cccchhhh
Q 035500 245 KFRDADEVELPK----YLRTMNLMELSSCLSPNLNGHAEMLDEVND--SNEFPGGAHKQDL-MDANVKLK 307 (606)
Q Consensus 245 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~v~L~ 307 (606)
++||||+|||+| ++++||.++||.||++|||||.+|.+.|.+ ||...++|++|.| +++|+.-.
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred cccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh
Confidence 899999999999 999999999999999999999999999999 8899999999999 88888543
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=1.9e-06 Score=94.87 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=95.6
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
+.+.+|+| +++.++.++.+ ..|++||+.+++..... .+.+......|+|++...+++.+.+| .|.+||+.+
T Consensus 206 v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 206 ILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred cccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 55678999 99999987743 46999999887764322 33444567899995444445667666 588899877
Q ss_pred CCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC-CCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY-SKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~-Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. +..+..+ ......+|+|+|+.++.++. ++. |.++|+.+++..+... +.......+|+|+|.
T Consensus 282 g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 282 RQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDGK 348 (433)
T ss_pred CC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCC
Confidence 32 2222222 33467899999998877664 444 6777777766533322 233445789999999
Q ss_pred eEEEEEeCCC
Q 035500 591 LCLLLLHLTT 600 (606)
Q Consensus 591 ~LLaTgS~Dg 600 (606)
+++++...++
T Consensus 349 ~Ia~~~~~~~ 358 (433)
T PRK04922 349 KIAMVHGSGG 358 (433)
T ss_pred EEEEEECCCC
Confidence 8776655443
No 223
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.53 E-value=5e-07 Score=91.97 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+...+|+..+++++.+||.||.+.-||++. ++.+.. ...-|+..|.+|.-+|..+.++++|+.|..|++||.+..
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm--- 243 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM--- 243 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc---
Confidence 667788888999999999999999999983 333332 234788999999999888899999999999999999975
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCc-----eeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEK-----PLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k-----~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.+|+..-...+.|+.+.++|.-. .+..+..-+-.+|-+...+. ...... .|.+-++.-.|+.... +
T Consensus 244 ------~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~-~hdSl~YG~DWd~~~~-~ 315 (339)
T KOG0280|consen 244 ------GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK-IHDSLCYGGDWDSKDS-F 315 (339)
T ss_pred ------cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc-cccceeeccccccccc-e
Confidence 34554444457799999999753 44444444556777776542 223334 6888888888865534 5
Q ss_pred EEEEe-CCCeEE
Q 035500 593 LLLLH-LTTMSR 603 (606)
Q Consensus 593 LaTgS-~DgtIR 603 (606)
+|||| .|+.+|
T Consensus 316 lATCsFYDk~~~ 327 (339)
T KOG0280|consen 316 LATCSFYDKKIR 327 (339)
T ss_pred eeeeecccccee
Confidence 77765 566655
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.52 E-value=2.5e-07 Score=98.73 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=122.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--------------------------cC----------CCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS--------------------------IG----------GTN 483 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~--------------------------~g----------H~~ 483 (606)
+..+.|+. +|..++.|+.-|-|--+|+.+++....+.. .+ ...
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~ 210 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI 210 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence 34567887 999999999999999999998877554331 01 124
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
.|..+.|.| ..-+|+++|..|.++.-|+..++ .+..+. +.+.+..++.+|-...+-+|...|+|.+|.
T Consensus 211 ~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gk----------lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 211 RVARLEFLP-YHFLLVAASEAGFLKYQDVSTGK----------LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred chhhhcccc-hhheeeecccCCceEEEeechhh----------hhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 566778888 55778999999999999999853 344444 345678888899999999999999999999
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
....+++..+. .|.++|.+++++++|.+ +||+|.|..+++
T Consensus 280 P~skePLvKiL-cH~g~V~siAv~~~G~Y-MaTtG~Dr~~kI 319 (545)
T KOG1272|consen 280 PNSKEPLVKIL-CHRGPVSSIAVDRGGRY-MATTGLDRKVKI 319 (545)
T ss_pred CCCcchHHHHH-hcCCCcceEEECCCCcE-EeecccccceeE
Confidence 99999987777 69999999999999996 889999998875
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=4.3e-06 Score=92.00 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+.+.+|+| +++.++.++.+ ..|.+||+.+++..... ...+.+...+|+|++...+++.+.+|...+|.++...
T Consensus 198 v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 198 IISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred cccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 56778999 99999887753 45999999988765432 2334567889999543344577889988888765421
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-CCcEEEEEC--CCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-SKNVALYDI--NTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDl--rt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. ....+.. ........|+|+|+.++.++. ++...+|.+ .+++...... +.......+|+|+|.++
T Consensus 274 --------~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 274 --------S-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPRISPDGKLL 342 (427)
T ss_pred --------C-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceEECCCCCEE
Confidence 1 1222332 223567789999997776654 466666654 4444332222 22334467899999987
Q ss_pred EEEEeCCC
Q 035500 593 LLLLHLTT 600 (606)
Q Consensus 593 LaTgS~Dg 600 (606)
+.++..++
T Consensus 343 a~~s~~~g 350 (427)
T PRK02889 343 AYISRVGG 350 (427)
T ss_pred EEEEccCC
Confidence 66554443
No 226
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=1.7e-06 Score=90.64 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=113.6
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
..+.+.+|.|... +-|++|+. ...++.+|+.+|+|..-|+++.+.+..+.-....+.|+.+..+|. .+.|++.
T Consensus 95 KPI~~~~~~H~SN-----IF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~ 167 (609)
T KOG4227|consen 95 KPIGVMEHPHRSN-----IFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVV 167 (609)
T ss_pred CCceeccCccccc-----eEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEE
Confidence 3344445554333 66899998 667999999999999999999887766544445669999999995 6899999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-eEEEc--CCC-
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-LQLFT--DMH- 576 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-v~~l~--~gH- 576 (606)
+.+|.|.+||.+..... ..++..-.......++-|||.. .++++.+..+-+.+||+|.... +.... .+-
T Consensus 168 t~~~~V~~~D~Rd~~~~------~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNP------ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred ecCceEEEEeccCCCCC------CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 99999999999984211 1233333345557889999987 5888888889999999997533 21111 011
Q ss_pred --CCCeEEEEEeCCCCeEEE
Q 035500 577 --REPINVAKFSHHSPLCLL 594 (606)
Q Consensus 577 --~~~I~sV~fsP~g~~LLa 594 (606)
...-..+.|+|.|..+++
T Consensus 242 ~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred ccchhhhheeeCCCCCeehh
Confidence 112346778888876554
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.47 E-value=3.4e-06 Score=87.10 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.-+.|....-.++.....|+.|.+|++...+..-.+. ....++..++|+|++...|.+...|-.|.+|.+.+.+
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--- 125 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--- 125 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec--cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence 44567887455566677889999999998766554444 5567899999999665678888899999999998732
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C-----------------------------------CcEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S-----------------------------------KNVALYD 562 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D-----------------------------------g~I~IWD 562 (606)
.. .+.+ +..+..++|||+|++.+..+. | ..+.+||
T Consensus 126 -------~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 126 -------GY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred -------eE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 11 1222 233455666666655544432 1 1223344
Q ss_pred CCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
---.-.+...+ -.-.+..+.|+|.++ +++.|+.|+++|.
T Consensus 198 ~~Leykv~aYe--~~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 198 NVLEYKVYAYE--RGLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred chhhheeeeee--eccceeEEEeccccc-eEEeeccchhhhh
Confidence 32222222222 235788999999988 5899999999986
No 228
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=2.9e-06 Score=88.72 Aligned_cols=110 Identities=15% Similarity=0.269 Sum_probs=88.5
Q ss_pred EEEcCC-CCCEEEEE--eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-EEEEeCCCCCCC
Q 035500 443 FEYNPS-NPSLMAFG--TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-VRLFDLNHIPPK 518 (606)
Q Consensus 443 lafsP~-dg~~LaSG--s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-IklWDl~~~~~~ 518 (606)
+|++|+ ...++|-- ...|.|.|||..+-+.+.++. .|++++-+++|++ +|.++||+|+-|+ |||+.+..+
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G--- 206 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEG--- 206 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCc---
Confidence 355552 34477653 246999999999888888776 9999999999998 7899999999996 579999874
Q ss_pred cccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 519 VADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..+..|+.. ..|.+++|+|++.+++++|..++|.++-+..
T Consensus 207 -------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 -------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 345566632 3389999999999999999999999998774
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.46 E-value=2.9e-07 Score=92.48 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++.|.+ .-+.-++|+.+..+..|.+.. +.+.......-..-.|.++..-| ++..+||+|.|+.|++|..++
T Consensus 208 vlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt--- 282 (323)
T KOG0322|consen 208 VLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT--- 282 (323)
T ss_pred ceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEecc---
Confidence 78899988 455667888888899998753 33221111111223578888888 668999999999999999999
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
..|+..+.. ...|++++|+|+.+++|++|.|++|.+|++
T Consensus 283 -------l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 -------LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 457777774 456999999999999999999999999986
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=4.2e-06 Score=95.30 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=111.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE--EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.++.+++ .+.+.+....++ +.+|+.+++.... .-....|.-.+++.+++| +++++++|-.||.|.+|.--....
T Consensus 164 ~~I~~~~-~ge~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~- 239 (792)
T KOG1963|consen 164 KSIVDNN-SGEFKGIVHMCK-IHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD- 239 (792)
T ss_pred ccEEEcC-CceEEEEEEeee-EEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc-
Confidence 4566777 776666666554 8899887754211 111235777789999999 789999999999999997544111
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.......+. |+..|++++|+++|.++.|||..+.+-.|.+.+++. +-++ --.++|..+.++|++.. .+...
T Consensus 240 -----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-RLgs~I~~i~vS~ds~~-~sl~~ 311 (792)
T KOG1963|consen 240 -----DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-RLGSPILHIVVSPDSDL-YSLVL 311 (792)
T ss_pred -----ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-ccCCeeEEEEEcCCCCe-EEEEe
Confidence 022344455 678899999999999999999999999999999983 3334 34689999999999985 66666
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.|..|.
T Consensus 312 ~DNqI~ 317 (792)
T KOG1963|consen 312 EDNQIH 317 (792)
T ss_pred cCceEE
Confidence 676654
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.7e-06 Score=94.51 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=104.4
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
+.++++.....++..| ....|+-++++.|+.+..+. ...+.++.+..++ -..+|++|+.||.|-.||.+.... ..
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~--~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksr-v~ 211 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFE--TDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSR-VG 211 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEccccccccccc--cccccceeeeecC-ccceEEecccCceEEEecchhhhh-he
Confidence 4567776455555544 45568999999999988776 3447899999988 457899999999999999987321 11
Q ss_pred cccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 521 DARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 521 ~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
.+.....+....+ ...|+++.|+-+|=.++.|+.+|.+.|||+|+.+++..-.++..-+|..+.|.+.
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 1110011111111 1239999999888899999999999999999999987777566778999999776
No 232
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.44 E-value=3.4e-06 Score=97.46 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE-----EEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL-----GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~-----~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+...++.++.+..+-+||...+...... .+...+. .+.+++ ++-++++|+.-+.|.+|+....
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d-------- 165 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED-------- 165 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhc---CCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc--------
Confidence 4568888999999999998876665433 3332222 111232 3457999999999999999853
Q ss_pred CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 524 GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 524 ~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+++...|.+.+.++.|+-+|.+++|.|+|+++++|++.+++......++|+.+|+.+.|.|. .++|++.|.+.|
T Consensus 166 -n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 166 -NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred -CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 3455556677889999999999999999999999999999998877555589999999999998 489999999988
Q ss_pred E
Q 035500 604 C 604 (606)
Q Consensus 604 c 604 (606)
+
T Consensus 242 v 242 (967)
T KOG0974|consen 242 V 242 (967)
T ss_pred E
Confidence 6
No 233
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=3.6e-06 Score=95.79 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=92.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.+++++|| +++++|+|..||+|.+|.--. +.....-.++-|..+|.+++|++ ++.+|+|||..|.+-+|.+.++++
T Consensus 208 ~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 208 ITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCCc
Confidence 57889999 999999999999999997432 33333333568999999999998 678999999999999999998532
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
..--+-..+|..+.++|++++.+....|+.|.+-...+.
T Consensus 286 ----------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 286 ----------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ----------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 111123577999999999999999999999999866543
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=5.6e-07 Score=100.37 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=118.0
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|-.++|+|+ -..+-++......-.||++.. ...+ .+.++||..+|+++.|+|+.+..+++++.|..+..||+++.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp- 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP- 147 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCC-
Confidence 445678762 223444444555567899653 2333 44567999999999999999999999999999999999995
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..|+..+.. +.....|+|+-....+.+.+..+.|++||.|.| .++..++ +|...|+.+.|+..-...+.
T Consensus 148 --------~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 148 --------HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred --------CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhc
Confidence 456666654 566889999988766666666788999999987 4567777 79999999999876655688
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+++.|++|+.
T Consensus 219 s~~~d~tvkf 228 (1081)
T KOG0309|consen 219 SSSNDGTVKF 228 (1081)
T ss_pred ccCCCCceee
Confidence 9999999874
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=1.6e-05 Score=88.20 Aligned_cols=146 Identities=8% Similarity=-0.012 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCCEEEEEeCC-C--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--EEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-G--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-G--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt--IklWDl~~ 514 (606)
+.+..|+| ||+.++..+.+ | .|.+||+.+++....... .+.....+|+|++...+++.+.+|. |.+||+.+
T Consensus 220 ~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 220 LMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred ccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 45678999 89988876543 3 588899988775432222 2234578999954434456677776 66667765
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+. +.......+|+|+|+.++..+. + ..|.++|+.+++.......+ ......+|+|+|.
T Consensus 296 g~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~ 362 (448)
T PRK04792 296 KA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGR 362 (448)
T ss_pred CC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCC
Confidence 31 12222 2234567899999987765553 3 35777788877654432212 2234578999999
Q ss_pred eEEEEEeCCCeE
Q 035500 591 LCLLLLHLTTMS 602 (606)
Q Consensus 591 ~LLaTgS~DgtI 602 (606)
+++.++..++..
T Consensus 363 ~l~~~~~~~g~~ 374 (448)
T PRK04792 363 SMIMVNRTNGKF 374 (448)
T ss_pred EEEEEEecCCce
Confidence 877766655543
No 236
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.8e-07 Score=98.64 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=160.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc----cccccccccEEecccCCCcccccc-cccccCccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l 174 (606)
.|||+|-|++..-+.-+....++.=..|..||||.|-|.+.+ .+..|++|+.|||+ .|++.++.+ .--..+|.|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhh
Confidence 489999999977777776678888889999999999988865 56789999999999 999988854 233489999
Q ss_pred cEEEcccccccchhhhhHHhhc-CCchhhhhhceecccCCCCCcccCCcccccCCCCCC-cCCCchhhHHHhhccccC--
Q 035500 175 MCLSMCETRIVNLWTTTAAISK-LPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADD-RVKDNEDQIVCKKFRDAD-- 250 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 250 (606)
++|++..+.++ |.++.-+-+ +|+|.+|-++. |+ -+..+..-.+-++++..|
T Consensus 200 K~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~-----------------------N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 200 KQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEA-----------------------NEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred heEEeccCCCC--HHHHHHHHHhCCcHHHhhhhc-----------------------ccccceecchhhhhhHHhhcccc
Confidence 99999999999 999988766 99999998554 11 011111111223444433
Q ss_pred ---cccchh--hhcccchhhhhccCCCCCCCcceecccccC--------CCCCCCCcccccc-c---ccch----hhhhh
Q 035500 251 ---EVELPK--YLRTMNLMELSSCLSPNLNGHAEMLDEVND--------SNEFPGGAHKQDL-M---DANV----KLKKY 309 (606)
Q Consensus 251 ---~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~---l~~v----~L~~~ 309 (606)
=|||.+ +.+.||-|+ .|.+..+|+--|.+-=.. |.+..+....|++ + +..+ +|+ +
T Consensus 255 ~N~li~~~~~~~~~~l~~L~---~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk-~ 330 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLN---QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK-H 330 (505)
T ss_pred CCcccccccccccccccchh---hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh-h
Confidence 244442 444444444 444666777666543331 5577777777776 3 3333 566 7
Q ss_pred hccCCCCcccchh-hHHHHHhhCCCceeccCCCCCcchHHHHHHHhh
Q 035500 310 ISHHPSPICFEKH-YREYMIASLPQLEVLDNLPIGRLDREIAKSVFA 355 (606)
Q Consensus 310 l~~~~npi~~~~~-YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ifS 355 (606)
+.-..|++..++. -+.-|||++++|..|....+...+|-.|.-.|-
T Consensus 331 l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 331 LRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred hhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 7777888885554 345599999999999999999999988875544
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=1.8e-05 Score=87.17 Aligned_cols=138 Identities=16% Similarity=0.236 Sum_probs=89.3
Q ss_pred eEEEEcCCCCCEEEEE-eCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEe--CCC
Q 035500 441 RQFEYNPSNPSLMAFG-TLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFD--LNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaSG-s~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWD--l~~ 514 (606)
...+|+| ||+.|+.. +.+| .|++||+.+++.... ..+...+....|+| +++.|+.++. ++...+|. +.+
T Consensus 246 ~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 246 GAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC
Confidence 3568999 88888765 4455 588999988776542 24445678899999 5566665554 45556664 443
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+. ...+. .........|+|+|+.++..+.+ ..|.+||+.+++.. .+...+ ......|+|+|.
T Consensus 321 g~-----------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 321 GA-----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGT 386 (429)
T ss_pred CC-----------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCC
Confidence 21 12222 22335678899999988776543 45889999888653 333222 234678999999
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
+++.++.
T Consensus 387 ~i~~~s~ 393 (429)
T PRK03629 387 MVIYSSS 393 (429)
T ss_pred EEEEEEc
Confidence 7655544
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=1.6e-05 Score=87.62 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=91.0
Q ss_pred eEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCe--EEEEeCCC
Q 035500 441 RQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGC--VRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dgt--IklWDl~~ 514 (606)
.+.+|+| +++.++ +.+.+| .|++||+.++.... ...|.......+|+| ++..++.++ .+|. |.++|+..
T Consensus 251 ~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 251 GAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR---LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEE---CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 4578999 887765 455555 59999998877543 224555567789999 556666555 4555 44455544
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+. ....++. .......+|+|+|+.++..+.+ ..|.+||+.+++.. .+. +........|+|+|.+
T Consensus 326 g~---------~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 326 GS---------AERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSM 392 (433)
T ss_pred CC---------eEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCE
Confidence 21 1111222 2234568999999988776543 26999999888764 333 2234456799999998
Q ss_pred EEEEEeCCC
Q 035500 592 CLLLLHLTT 600 (606)
Q Consensus 592 LLaTgS~Dg 600 (606)
++.++...+
T Consensus 393 i~~~s~~~g 401 (433)
T PRK04922 393 VLYATREGG 401 (433)
T ss_pred EEEEEecCC
Confidence 776655433
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=3.1e-05 Score=84.98 Aligned_cols=143 Identities=11% Similarity=0.071 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dg--tIklWDl~ 513 (606)
+.+..|+| +|+.|+..+.+ ..|.+||+.+++..... ...+.+....|+|+ +..+ ++.+.+| .|.+||+.
T Consensus 201 ~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpD-G~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 201 ILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPD-GSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred eeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCC-CCEEEEEEccCCCceEEEEECC
Confidence 56778999 89988877644 36899999988765422 22334557899995 4555 4666666 57777887
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ...+. +........|+|+|+.++..+. + ..|.+||+.+++..+....+ .......|+|+|
T Consensus 276 ~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg 342 (430)
T PRK00178 276 SRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADG 342 (430)
T ss_pred CCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCC
Confidence 632 11222 2233566789999987665553 3 35778888887754332212 233457899999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
.+++.+...++
T Consensus 343 ~~i~~~~~~~~ 353 (430)
T PRK00178 343 KTLVMVHRQDG 353 (430)
T ss_pred CEEEEEEccCC
Confidence 98777665554
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=5.7e-06 Score=87.06 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=105.3
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
++.+.|-| .....+|+++.-|.||+||...+ +++..+.+. ..+++++.-.| .++.+++|-.-|.+..+|.+.++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k- 280 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK- 280 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecC-CCcEEEEecccchhheecccCce-
Confidence 55667876 12789999999999999998864 566666643 45689999888 67899999999999999999852
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
-....+++ .+.|.+|+.||.+.+++++|-|+.|||+|+.+.+++...- -...++++-+.++
T Consensus 281 --------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 281 --------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred --------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 23334554 5679999999999999999999999999999976654333 2456777777554
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=1.7e-05 Score=87.24 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCCEEE-EEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+...+|+| |++.++ +.+.+|...||.+ .++.. .. +..|.+......|+| ++..++..+ .+|...+|.+...
T Consensus 242 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~--lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 242 NSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGL-RR--LTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred ccceEECC-CCCEEEEEEccCCCceEEEEECCCCCc-EE--CCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECC
Confidence 44678999 888776 5677888777764 44443 22 224555566788999 556665544 4577788876532
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. .....++.+ ......+|+|+|++++..+.++ .|.+||+.+++...... + .......|+|+|..+
T Consensus 317 ~g-------~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--~~~~~p~~spdg~~l 385 (427)
T PRK02889 317 GG-------AAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--TRDESPSFAPNGRYI 385 (427)
T ss_pred CC-------ceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--CCccCceECCCCCEE
Confidence 11 111112222 2244678999999988776554 69999999887543322 2 334678999999987
Q ss_pred EEEEeCCCe
Q 035500 593 LLLLHLTTM 601 (606)
Q Consensus 593 LaTgS~Dgt 601 (606)
+.++..++.
T Consensus 386 ~~~~~~~g~ 394 (427)
T PRK02889 386 LYATQQGGR 394 (427)
T ss_pred EEEEecCCC
Confidence 777655543
No 242
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=2.3e-06 Score=88.81 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|-+++|+- .++++..|..+|.|.+.|++.+.. ........|.++|+++......+.+|.+.+.+|+|++||.+..+.
T Consensus 255 VfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 255 VFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred HHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 55667776 678999999999999999876411 111122378999999987654667899999999999999998542
Q ss_pred CcccccCCcceEEeecCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEe
Q 035500 518 KVADARGNSSVATYYDFEQ---LTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFS 586 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~---V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fs 586 (606)
+..+.++.+|.. -.-+..++....++++|+|...+||.++.|..+.+++.. ....+.+++|.
T Consensus 334 -------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 334 -------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred -------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 445888887633 233456777789999999999999999999998887742 12356677765
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=5.3e-05 Score=78.17 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=85.5
Q ss_pred EcC-CCCCEEEE-EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-EEEEeCCCCCCCccc
Q 035500 445 YNP-SNPSLMAF-GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-VRLFDLNHIPPKVAD 521 (606)
Q Consensus 445 fsP-~dg~~LaS-Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-IklWDl~~~~~~~~~ 521 (606)
..| .+..+||. |-.-|.|+|-|+...+........+|.+.|.+++.+. .+.++||+|..|| |||||..++
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g------ 214 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG------ 214 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC------
Confidence 444 23345554 5567999999987655532223349999999999996 6789999999996 689999984
Q ss_pred ccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 522 ARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 522 l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
..+..++. +..|.+|+|+|++.++|++|+-|++.|+.++..
T Consensus 215 ----~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 ----TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45666653 445999999999999999999999999988853
No 244
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=4.7e-06 Score=88.33 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=82.0
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..++|+. ++..+++|+.||++|+|+..... .-.....|+..|.+++|+|+|+++++-|.| ..++||.++
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 6788887 67899999999999999977642 122233478889999999999999999999 999999998
Q ss_pred CceeEEEc----------------------------CC------------C-------------CCCeEEEEEeCCCCeE
Q 035500 566 EKPLQLFT----------------------------DM------------H-------------REPINVAKFSHHSPLC 592 (606)
Q Consensus 566 ~k~v~~l~----------------------------~g------------H-------------~~~I~sV~fsP~g~~L 592 (606)
+..+.... .. | ...|.+++.+++|+ +
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f 295 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-F 295 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-E
Confidence 82211100 00 1 23688999999998 4
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+|.|+.||.|-+
T Consensus 296 ~AlGT~dGsVai 307 (398)
T KOG0771|consen 296 LALGTMDGSVAI 307 (398)
T ss_pred EEEeccCCcEEE
Confidence 889999998765
No 245
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=4.7e-05 Score=83.96 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=85.8
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEeecCCC
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQ 536 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~ 536 (606)
..|.+||...+.. ..+. .|...+...+|+| ++..|+..+. +..|.+||+.++. ....-.....
T Consensus 182 ~~l~~~d~dg~~~-~~lt--~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~----------~~~l~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLT--DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ----------RELVGNFPGM 247 (435)
T ss_pred eEEEEECCCCCCc-EEEe--cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCc----------EEEeecCCCc
Confidence 4788899864443 3333 6778899999999 5677776653 4689999998742 1111123445
Q ss_pred eEEEEEccCCCEEE-EEeCCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 537 LTSVHVNSTDDQFL-ASGYSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 537 V~sV~~sp~g~~La-Sgs~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+...+|+|+|+.++ +.+.++. |.+||+.+++.. .+. .+........|+|+|.+++.++..++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCC
Confidence 67889999998664 5565554 777899887654 344 35566778999999998766654444
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=3.4e-06 Score=90.74 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=123.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC----CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN----SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~----~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.-++.-|.++.-+.+++.|+.|.=+|+.++.....+....++. ..+.++..|.+...+++|+.|..+++||.+..
T Consensus 235 vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 235 VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred cceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 66778888888999999999999999998877665554444433 36688899988889999999999999998753
Q ss_pred CCCc-cc-----------------c-----------------------------cCC---------cceE-EeecC---C
Q 035500 516 PPKV-AD-----------------A-----------------------------RGN---------SSVA-TYYDF---E 535 (606)
Q Consensus 516 ~~~~-~~-----------------l-----------------------------~~~---------~~i~-t~~~~---~ 535 (606)
.... +. + .+. ..+. .+++| .
T Consensus 315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~ 394 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR 394 (559)
T ss_pred hhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccc
Confidence 2210 00 0 000 1111 24443 1
Q ss_pred CeEEEEE-ccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 536 QLTSVHV-NSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 536 ~V~sV~~-sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|..|-| -|..++++|||+-|.|.|||-.+++.++.++ |-..-|+|+.=+|.-+ +||++|-|.-||+
T Consensus 395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~P-vLAsSGid~DVKI 462 (559)
T KOG1334|consen 395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLP-VLASSGIDHDVKI 462 (559)
T ss_pred ccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCc-hhhccCCccceee
Confidence 2666654 5778899999999999999999999999888 6666999999999999 7999999998875
No 247
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.15 E-value=1.9e-05 Score=83.42 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=104.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCC--EEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPS--KLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~--~LaSgS~DgtIklWDl~~~~ 516 (606)
+.-+..+| ++.++|.+..+....+++...... ........-...-+.+.|...... ..-.+++...+.+|....+
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 33445777 899999999999988888654332 111111122223344444432222 2233455666666666542
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.+...+.|-+-+.+|+|+|++++++++..|..|++--....-.+..|..||+.-|..++.-++. .+++|
T Consensus 143 ---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~ 211 (390)
T KOG3914|consen 143 ---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSG 211 (390)
T ss_pred ---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeec
Confidence 2333445556699999999999999999999999977776677788888999999999998765 48899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|+|+++|.
T Consensus 212 sGD~tlr~ 219 (390)
T KOG3914|consen 212 SGDKTLRL 219 (390)
T ss_pred CCCCcEEE
Confidence 99999984
No 248
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.3e-06 Score=67.98 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=45.8
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccc
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRI 184 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 184 (606)
++|+|++|+|+.+. .+..+++|++|+|. +|.|+.++.+.|..||+|+.|.|.+|+|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888888888887 56778888888888 8888888888888888888888888865
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.14 E-value=0.0001 Score=79.83 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=91.8
Q ss_pred CEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+++ ++-..+|.|.|.|..+.+.+..+.. + ...-..+.|+| ++++++.++.||.|.++|+.+ .+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~-~-~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~----------~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT-G-GAPHAGLKFSP-DGRYLYVANRDGTVSVIDLAT----------GKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE--S-TTEEEEEE-TT--SSEEEEEETTSEEEEEETTS----------SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC-C-CCceeEEEecC-CCCEEEEEcCCCeEEEEECCc----------ccEEE
Confidence 344 4556789999999999999888763 2 22234567887 678899999999999999998 45677
Q ss_pred EeecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCC------CCCCeEEEEEeCCCCeEEE
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDM------HREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~g------H~~~I~sV~fsP~g~~LLa 594 (606)
+........+++++++|++++++. ..+.+.++|.++.++++.++.+ ...++..+..+|.++..++
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 777777788999999999888776 5799999999999998887632 2346778888888875333
No 250
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.13 E-value=4.1e-07 Score=100.12 Aligned_cols=138 Identities=22% Similarity=0.238 Sum_probs=100.7
Q ss_pred cceEEEccCcccc---chHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc
Q 035500 101 KLRVVDLSNITLR---NDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 101 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
+|+.+||+.|... .|.|. .+| .=++|||++|+|..|. -+-.+.+|++|+|. -|+|+.|+|+-|-||.+|+
T Consensus 294 ~L~~L~lS~NaI~rih~d~Ws-ftq---kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs-~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWS-FTQ---KLKELDLSSNRITRLDEGSFRVLSQLEELNLS-HNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred hhhhhccchhhhheeecchhh-hcc---cceeEeccccccccCChhHHHHHHHhhhhccc-ccchHHHHhhHHHHhhhhh
Confidence 5667777765322 22221 111 2367999999999997 56689999999999 9999999999999999999
Q ss_pred EEEcccccccchhhhhHHh-hcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccc
Q 035500 176 CLSMCETRIVNLWTTTAAI-SKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVEL 254 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (606)
+|.+-.|+++---.+.|+. ..||+|++|+|++=. =-++...+|.-
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq----------------------------lk~I~krAfsg------ 414 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ----------------------------LKSIPKRAFSG------ 414 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCce----------------------------eeecchhhhcc------
Confidence 9999999998444455554 459999999988611 01111223332
Q ss_pred hhhhcccchhhhhccCCCCCCCcceecccccC
Q 035500 255 PKYLRTMNLMELSSCLSPNLNGHAEMLDEVND 286 (606)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (606)
++-|..|++++|-|+-|+++-=+
T Consensus 415 ---------l~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 415 ---------LEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred ---------CcccceecCCCCcceeecccccc
Confidence 36788899999999999976544
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.12 E-value=1.6e-05 Score=82.30 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=102.3
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA 522 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l 522 (606)
..||| +|+++|+.+.- .+-|-|.++-+....+.. -+.|.-+.|..+....+.....|+.|.+|++...
T Consensus 14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------- 81 (447)
T KOG4497|consen 14 CSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------- 81 (447)
T ss_pred eeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecc-------
Confidence 35999 99999999876 678888887665544332 3457788998766566777889999999999873
Q ss_pred cCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 523 RGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 523 ~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.-....+ +..++.+++|+|+|+ ++.++.-|-.|.+|.+.+.+....-. -+..+..++|+|+|++.....-.|
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeeccc
Confidence 2223333 456699999999995 66677778999999999877654322 234568899999999744333333
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=7.6e-05 Score=82.38 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred EEEEcCCCCCEEEEEeC-----CCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 442 QFEYNPSNPSLMAFGTL-----DGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 442 slafsP~dg~~LaSGs~-----DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
..+|+| ||+.||..+. |..+.+|+...+ ....... ++.+.....+|+| ++..|+..+ .+|...+|.+
T Consensus 235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEE
Confidence 457999 9988887553 223444776653 2222211 2223346789999 456555444 5776667754
Q ss_pred CCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 513 NHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
..... ......+. +...+....|+|+|+.++..+.+ ..|.+||+.+++...... ....+....|+|+
T Consensus 311 ~~~~~-------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpD 381 (428)
T PRK01029 311 QIDPE-------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAID 381 (428)
T ss_pred ECccc-------ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCC
Confidence 32110 01122222 23456788999999988766543 469999999887644332 2345678999999
Q ss_pred CCeEEEEEeCCC
Q 035500 589 SPLCLLLLHLTT 600 (606)
Q Consensus 589 g~~LLaTgS~Dg 600 (606)
|.+++.++..++
T Consensus 382 G~~L~f~~~~~g 393 (428)
T PRK01029 382 SLHLVYSAGNSN 393 (428)
T ss_pred CCEEEEEECCCC
Confidence 998777665443
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.11 E-value=0.0001 Score=80.05 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=92.4
Q ss_pred eeEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-Dg--tIklWDl~ 513 (606)
+.+.+|+| +++.++ +.+.+| .|++||+.++..... ..+........|+| ++..++.++. ++ .|.+||+.
T Consensus 236 ~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 236 NGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred ccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 44678999 887665 444444 588899887765432 24444455678998 5566665543 44 46666766
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+. . ...+. +...+....|+|+|++++.++.++ .|.+||+.++... .+.. ........|+|++
T Consensus 311 ~~----------~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg 376 (417)
T TIGR02800 311 GG----------E-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNG 376 (417)
T ss_pred CC----------C-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCC
Confidence 52 1 12222 334467788999999888887765 7999999886543 3331 1233456899999
Q ss_pred CeEEEEEeCCCe
Q 035500 590 PLCLLLLHLTTM 601 (606)
Q Consensus 590 ~~LLaTgS~Dgt 601 (606)
.+++++...++.
T Consensus 377 ~~l~~~~~~~~~ 388 (417)
T TIGR02800 377 RMILYATTRGGR 388 (417)
T ss_pred CEEEEEEeCCCc
Confidence 987776665543
No 254
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.07 E-value=1.1e-05 Score=90.52 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=114.8
Q ss_pred cCCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC
Q 035500 417 AWPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS 496 (606)
Q Consensus 417 ~~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~ 496 (606)
+.+-...+++..|+|..+ ++.+.|+|+.+..+|+++.|-.|..||+.+-..-. .....-......++|+..++.
T Consensus 99 A~ss~~aIef~lhghsra-----itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~-ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRA-----ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF-YSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hcCCccceEEEEecCccc-----eeccccCCCCCcceeeccccccceeeeccCCCcce-eeeecccccCceeeecccCcc
Confidence 344445566666776555 56788999999999999999999999998633221 122244456788999976666
Q ss_pred EEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce--eEEE
Q 035500 497 KLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP--LQLF 572 (606)
Q Consensus 497 ~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~--v~~l 572 (606)
.++ .+....|.+||.+.+ ..|+.+++++ ..|+++.|+... ..+.+++.||+|++||...... -+..
T Consensus 173 vla-sshg~~i~vwd~r~g---------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 173 VLA-SSHGNDIFVWDLRKG---------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred hhh-hccCCceEEEeccCC---------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 554 456678999999996 4577777765 448999998764 5888999999999999986543 3333
Q ss_pred cCCCCCCeEEEEEeCCCCe
Q 035500 573 TDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~ 591 (606)
. ...+|+--++-|-|.-
T Consensus 243 t--t~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 243 T--TNFPIWRGRYLPFGEG 259 (1081)
T ss_pred c--ccCcceeccccccCce
Confidence 3 4677888888887754
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.06 E-value=1.2e-05 Score=83.51 Aligned_cols=123 Identities=15% Similarity=0.268 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+++++|.| ...++.+|..|..|.+||+.-++-+ .....+|.+.|..++..+ -...+.|++.||.|-+|+++......
T Consensus 200 ~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 200 VTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred eEEEEEcC-CCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecC
Confidence 88999999 7779999999999999999754444 345669999999998876 45789999999999999987542211
Q ss_pred ccc------------------------------------------------------------------------cCCcc
Q 035500 520 ADA------------------------------------------------------------------------RGNSS 527 (606)
Q Consensus 520 ~~l------------------------------------------------------------------------~~~~~ 527 (606)
..+ ....|
T Consensus 277 pewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~ 356 (404)
T KOG1409|consen 277 PEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTP 356 (404)
T ss_pred ccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCc
Confidence 000 01123
Q ss_pred eEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 528 VATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 528 i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
+.++. .+..|+.+++..+-.+++|+|.|+.|+|||++.
T Consensus 357 LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 357 LAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 33333 356688998877778999999999999999874
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.05 E-value=3.8e-05 Score=79.94 Aligned_cols=162 Identities=16% Similarity=0.250 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----eEEEEec----------cCCCCCEEEEEEeeC-CCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----VACYIPS----------IGGTNSVLGLCWLKK-YPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----~v~~~~~----------~gH~~~V~~L~fsp~-~~~~LaSgS~ 503 (606)
+.++.|.- .|.+||+|..+|+|-+|.-+... ....++. ..-...|..+.|.++ +...++..+.
T Consensus 28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 67888998 99999999999999999754322 1122210 012356889999764 3446777889
Q ss_pred CCeEEEEeCCCCCCCc--------------ccc-----------cCCcceEEeec-C-CCeEEEEEccCCCEEEEEeCCC
Q 035500 504 SGCVRLFDLNHIPPKV--------------ADA-----------RGNSSVATYYD-F-EQLTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 504 DgtIklWDl~~~~~~~--------------~~l-----------~~~~~i~t~~~-~-~~V~sV~~sp~g~~LaSgs~Dg 556 (606)
|.+|++|.++...... +.+ ....|.+.+.+ | .-|++|+++.+++.++|+. |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999987532211 000 00123344443 2 3399999999999988874 58
Q ss_pred cEEEEECCCCce---eEEEcCCC-----CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKP---LQLFTDMH-----REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~---v~~l~~gH-----~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|.+|.++-... +..++ +| +.-|++..|+|..-.+|+-+|..|+||.
T Consensus 186 RINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred eeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 899999884322 22222 22 3568999999999999999999999985
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=7.1e-05 Score=82.44 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=108.8
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-CCCEEEEEEe------e-------------CCCCEEEEEECCCe
Q 035500 447 PSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-TNSVLGLCWL------K-------------KYPSKLVAGSDSGC 506 (606)
Q Consensus 447 P~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fs------p-------------~~~~~LaSgS~Dgt 506 (606)
|.-..++|..+.||.+||||..+++....+.-..| .+...+..|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 33667999999999999999998887665543333 3455666664 1 12345788889999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|.++++..++- ...+.+-.|.+.|+++.|+.+-..|.|++.|+.+-.|+...++..+.+. +-+..+.+++.+
T Consensus 82 v~~ys~~~g~i-------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is 153 (541)
T KOG4547|consen 82 VLLYSVAGGEI-------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCIS 153 (541)
T ss_pred EEEEEecCCeE-------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEc
Confidence 99999988531 1111122355679999999888999999999999999999999999988 678899999999
Q ss_pred CCCCeEEEEEeC
Q 035500 587 HHSPLCLLLLHL 598 (606)
Q Consensus 587 P~g~~LLaTgS~ 598 (606)
|+|. ++++||.
T Consensus 154 ~D~~-~l~~as~ 164 (541)
T KOG4547|consen 154 PDGK-ILLTASR 164 (541)
T ss_pred CCCC-EEEeccc
Confidence 9987 5666654
No 258
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=83.65 Aligned_cols=153 Identities=15% Similarity=0.197 Sum_probs=111.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...++|+-....+-++.+.+-.|-+-|+++|-... + ..++.|.++.|.. .+.++..|.++|.|...|++....
T Consensus 214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f---~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-- 286 (425)
T KOG2695|consen 214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F---QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-- 286 (425)
T ss_pred chhhhhhhccceeeecccccceeEEEEeecccccc-c---ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc--
Confidence 33456765333344566777789999998865432 2 3456799999985 568999999999999999998422
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEE--EEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINV--AKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~s--V~fsP~g~~LL 593 (606)
....+...+-|.++|++++.-. +++.+++++.+|+|++||.|.-+. ++..+ ||-+.-.- +..++.... +
T Consensus 287 ---G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~-I 361 (425)
T KOG2695|consen 287 ---GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGS-I 361 (425)
T ss_pred ---CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccce-E
Confidence 1145677888899999998776 578999999999999999997666 88888 78544333 333455554 5
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|...|+
T Consensus 362 ~s~GdDcytRi 372 (425)
T KOG2695|consen 362 FSVGDDCYTRI 372 (425)
T ss_pred EEccCeeEEEE
Confidence 66888987764
No 259
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.01 E-value=1.8e-05 Score=56.51 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=32.9
Q ss_pred ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 471 NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 471 ~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
+++..+. +|.+.|.+++|+| ++..|+||+.|++|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 3445444 9999999999999 578999999999999997
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.00025 Score=77.79 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=89.2
Q ss_pred eeEEEEcCCCCCEEE-EEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dg--tIklWDl~ 513 (606)
+...+|+| +|+.++ +.+.+| .|++||..++.... +..+........|+|+ +..++..+ .+| .|.+||+.
T Consensus 245 ~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~~spD-g~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 245 NGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTEPFWGKD-GRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred cCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE---cccCCCCcCCeEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 34578999 888777 444555 68888998876543 2245555667889995 45554444 444 46666765
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-K--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
++.. ...++. ........|+|+|+.++..+.+ + .|.+||+.+++.. .+... .......|+|+|.
T Consensus 320 ~g~~---------~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~ 386 (430)
T PRK00178 320 GGRA---------ERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGT 386 (430)
T ss_pred CCCE---------EEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCC
Confidence 5321 111221 1223457899999988776643 3 5888999887653 33312 1223568999999
Q ss_pred eEEEEEeCCCe
Q 035500 591 LCLLLLHLTTM 601 (606)
Q Consensus 591 ~LLaTgS~Dgt 601 (606)
+++.++..++.
T Consensus 387 ~i~~~~~~~g~ 397 (430)
T PRK00178 387 MLIYATRQQGR 397 (430)
T ss_pred EEEEEEecCCc
Confidence 88777765554
No 261
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.01 E-value=0.00047 Score=74.68 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=96.9
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCCCCCcc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~~~~~~ 520 (606)
.+.++| |++++++++.||.|.++|+.+++.+..++. | ....++++++ ++++++++ -.++++.++|.++.
T Consensus 41 ~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G--~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tl----- 110 (369)
T PF02239_consen 41 GLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-G--GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETL----- 110 (369)
T ss_dssp EEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--S--SEEEEEEE---TTTEEEEEEEETTEEEEEETTT------
T ss_pred EEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-C--CCcceEEEcC-CCCEEEEEecCCCceeEeccccc-----
Confidence 356899 999999999999999999999999888764 3 3478899998 56776655 57999999999883
Q ss_pred cccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeCC-CcEEEEECCCCcee--EEEcCCCCCCeEEEEEeCCC
Q 035500 521 DARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGYS-KNVALYDINTEKPL--QLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 521 ~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~D-g~I~IWDlrt~k~v--~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..... ...+.+|.-+|....++..-.| +.|-+-|....+.+ ..+. .........|+|++
T Consensus 111 -----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 111 -----EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDG 183 (369)
T ss_dssp ------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS
T ss_pred -----cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCccc
Confidence 34544432 1347788888888866666555 88888898876543 3333 34667789999999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
++++++...+.
T Consensus 184 ry~~va~~~sn 194 (369)
T PF02239_consen 184 RYFLVAANGSN 194 (369)
T ss_dssp SEEEEEEGGGT
T ss_pred ceeeecccccc
Confidence 98777654433
No 262
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.98 E-value=6.3e-06 Score=79.96 Aligned_cols=110 Identities=26% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHhh---ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cc-cccccccEEecccCCCcccccc-cc
Q 035500 94 LMHAID---QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MV-GRFMHLNTLSLDFCSSLASLHE-DC 167 (606)
Q Consensus 94 ~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~l~tl~l~~~~~~~~~~~-~~ 167 (606)
-|+.++ .+|+++||++|. ...+..|.. =..=++|+|++|+|..+. .+ ..|++|++|.|. +|.|+.+.+ ..
T Consensus 33 ~Ie~L~~~l~~L~~L~Ls~N~--I~~l~~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~-~N~I~~l~~l~~ 108 (175)
T PF14580_consen 33 TIENLGATLDKLEVLDLSNNQ--ITKLEGLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS-NNKISDLNELEP 108 (175)
T ss_dssp ---S--TT-TT--EEE-TTS----S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-T-TS---SCCCCGG
T ss_pred cccchhhhhcCCCEEECCCCC--CccccCccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEECc-CCcCCChHHhHH
Confidence 344444 378999999954 444554433 122367999999999995 34 469999999999 999999977 67
Q ss_pred cccCccccEEEcccccccchhh-hhHHhhcCCchhhhhhce
Q 035500 168 FSCMPYLMCLSMCETRIVNLWT-TTAAISKLPYLMELRFQM 207 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~-~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|+|+.|+|.+|-|++.=. -.--+.++|+|+.|.++.
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8899999999999999987622 123578899999998666
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.98 E-value=0.00043 Score=84.37 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=108.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------ccCC------CCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------SIGG------TNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------~~gH------~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
.+..++++|.++.+.++.+.+++|++||..++....... ..++ -....+++|+|++..++++-+.++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 366789999677788888889999999998765432110 0011 1245679999955446777788899
Q ss_pred EEEEeCCCCCCCcccccC---CcceEEeec---------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 507 VRLFDLNHIPPKVADARG---NSSVATYYD---------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~---~~~i~t~~~---------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
|++||+.++......... ......+.. ...-.+++++++|+++++-+.++.|++||..++........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999998864311000000 000001100 01135889999999999999999999999988765433321
Q ss_pred C------------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 M------------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 g------------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ +-.....++++++|. ++++.+.++.||.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irv 884 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRY 884 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEE
Confidence 1 223567899999996 7888888888875
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.95 E-value=2.4e-05 Score=82.67 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=76.6
Q ss_pred EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee--c
Q 035500 456 GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY--D 533 (606)
Q Consensus 456 Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~ 533 (606)
++....+.+|....+.... ..||-+.++.++|+| ++..++++-.|..|++-..... .-+.+|- |
T Consensus 128 agD~~~~di~s~~~~~~~~---~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~----------f~IesfclGH 193 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEP---ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT----------FVIESFCLGH 193 (390)
T ss_pred cCCceeeeeecccccCcch---hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcc----------cchhhhcccc
Confidence 4455666667666555554 349999999999999 5689999999999998665542 2233333 4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 534 FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 534 ~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
..-|..++.-+ +..++|||.|+++++||+++|+.+.++.
T Consensus 194 ~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 194 KEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred Hhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 45588888764 4568999999999999999998876655
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.93 E-value=0.00039 Score=70.55 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++++| ++.++++.+....|..|.+.. ++...........+.-.+..|+. +...+|+++.||++.|||++.....
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccc
Confidence 56789999 999999999999999999865 33332222334455678889986 6688999999999999999986432
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcC------CC-CCCeEEEEEeCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTD------MH-REPINVAKFSHHS 589 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------gH-~~~I~sV~fsP~g 589 (606)
..... -..-.|.+++..+.|++.| .++.-+-.-+.+.+-|+|+.+-.+.+.. .| +..|....|+.++
T Consensus 239 m~~~s----strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 239 MAEIS----STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred hhhhc----ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 11110 0111256779999999877 3555554558899999999865433321 12 2347777787776
Q ss_pred CeEE
Q 035500 590 PLCL 593 (606)
Q Consensus 590 ~~LL 593 (606)
..+.
T Consensus 315 ~s~~ 318 (344)
T KOG4532|consen 315 ESND 318 (344)
T ss_pred cccc
Confidence 6544
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.93 E-value=1.8e-05 Score=79.67 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=85.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC--
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP-- 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~-- 517 (606)
|.+++-||...++++.|+.||.+-+||++...... -.+..|+.+++.+-|+|.++..|+++|.||.+-.||..+...
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i 260 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI 260 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchH-HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence 67888999888899999999999999998764322 224589999999999999999999999999999999885211
Q ss_pred -----CcccccCCcceEE-ee--c-----CCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 518 -----KVADARGNSSVAT-YY--D-----FEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 518 -----~~~~l~~~~~i~t-~~--~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
..+.|....+++. ++ . ...|++... .|..+++|++-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 1222322223322 11 0 112333333 377888888878887764
No 267
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00035 Score=77.55 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=84.2
Q ss_pred eeEEEEcCCCCCEEEEE----eCCCcEE----EEECCCCceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFG----TLDGEVI----VINHENGNVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSG----s~DGtVr----IWDi~tg~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.++.||-.++..+.+. +.+|.+. +|+...++... .+......+.|.+.+++| ...+++.|..||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 55677887677777663 3455543 56665443321 233347788999999999 67899999999999999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
|..... ....+..-..+.++|||+|..|++|+.-|.+.+||+.-+
T Consensus 287 D~~~~~-----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGV-----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCe-----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 988731 111123344789999999999999999999999999854
No 268
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=6.9e-06 Score=65.21 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=53.1
Q ss_pred ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 147 MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
++|.+|.|. .|+|+.++.+.|..||+|+.|.|.+|+|..+ .-.++..+|+|++|.++.|
T Consensus 1 p~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEET-SSTESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence 579999999 7899999999999999999999999999877 3346899999999998875
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.87 E-value=6.5e-05 Score=91.13 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+++.=||.++ +-+||+.||.|++|.+..+..+-.+...|. ..|+.+.|+. .|+.+..+-.||.+.+|....
T Consensus 2211 v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p----- 2282 (2439)
T KOG1064|consen 2211 VRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP----- 2282 (2439)
T ss_pred eeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc-cCCceeeeccCCceeecccCC-----
Confidence 66778899555 667999999999999999998888776565 8999999996 678888889999999998873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+..+++.| ....+..|- +..++++| +++.+.+||..-......+...|.+.++++++-|..+ ++.+
T Consensus 2283 ------k~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2283 ------KPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred ------cceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEe
Confidence 356667644 446777665 36666664 4689999998854333233347999999999999876 7999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.+|-|..
T Consensus 2354 ggr~G~v~l 2362 (2439)
T KOG1064|consen 2354 GGRKGEVCL 2362 (2439)
T ss_pred cCCcCcEEE
Confidence 999998864
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.85 E-value=4.7e-05 Score=54.31 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=32.5
Q ss_pred ceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 527 SVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 527 ~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
++.++.+| .+|++|+|+|++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56777765 6699999999999999999999999998
No 271
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=4.6e-06 Score=91.46 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=114.1
Q ss_pred HHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-cccccccccccEEecccCCCccccccccc
Q 035500 90 YIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|.....++-.++++..+.++ ..+.+++ -....|+.++|+.|.|.+ ++-++.|..|+.|+|. +|.|+.+... .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~-~n~i~~i~~~-l 114 (414)
T KOG0531|consen 42 LLLQLVPSDLEEIDLIFNLD-GSDEDLV----ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLY-DNKIEKIENL-L 114 (414)
T ss_pred cccccccchhhhhcchhccc-cchhhhH----HHhHhHHhhccchhhhhhhhcccccccceeeeecc-ccchhhcccc-h
Confidence 55666777677766666665 2233331 456678889999999999 6679999999999999 9999999654 7
Q ss_pred ccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccc
Q 035500 169 SCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRD 248 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (606)
++||+|..|++++|+|..+ ..|.+|+.|++|.+-+..
T Consensus 115 ~~~~~L~~L~ls~N~I~~i----~~l~~l~~L~~L~l~~N~--------------------------------------- 151 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL----EGLSTLTLLKELNLSGNL--------------------------------------- 151 (414)
T ss_pred hhhhcchheeccccccccc----cchhhccchhhheeccCc---------------------------------------
Confidence 8999999999999999999 778888888888744422
Q ss_pred cCcccchhhhcccchhhhhccCCCCCCCcceeccc-ccC-CCCCCCCccccc
Q 035500 249 ADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDE-VND-SNEFPGGAHKQD 298 (606)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 298 (606)
..++.+|+.+..|+.++++.|++..|-.. ++. .+..++.+.+|.
T Consensus 152 ------i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 152 ------ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ------chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 12566677788999999999999988873 222 344444444443
No 272
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.80 E-value=0.00028 Score=83.36 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|..-+|....+. .++.+...+.|..||+.+.......+.....+.|++++.+| .+.+++.|+.-|.+-+||++-
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF---- 1226 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF---- 1226 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec----
Confidence 555566554555 78889999999999999877777666656678999999999 567999999999999999998
Q ss_pred cccccCCcceEEeec--CCCeEEEEEccCC---CEEEEEe--CCCcEEEEECCCCceeEEEcCC----------------
Q 035500 519 VADARGNSSVATYYD--FEQLTSVHVNSTD---DQFLASG--YSKNVALYDINTEKPLQLFTDM---------------- 575 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~--~~~V~sV~~sp~g---~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~g---------------- 575 (606)
+.++..+.+ +.++..|..+|.. ...+++| ..+-|.+|++.+|....++..+
T Consensus 1227 ------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1227 ------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred ------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 567877775 5668888888763 3444444 4688999999998665554421
Q ss_pred --CCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 576 --HREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 576 --H~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
+.-......+. .+.-++.||+.|..||
T Consensus 1301 kp~~~~~~~~~~~-~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVC-EKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CCCcccceeeecc-cCCceeeecCCcccee
Confidence 11112222232 2333678899998887
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.00098 Score=74.03 Aligned_cols=143 Identities=12% Similarity=0.109 Sum_probs=86.2
Q ss_pred eEEEEcCCCCCEEEE-EeCCCc--EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCe--EEEEeCCC
Q 035500 441 RQFEYNPSNPSLMAF-GTLDGE--VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGC--VRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaS-Gs~DGt--VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dgt--IklWDl~~ 514 (606)
...+|+| +++.++. .+.+|. |.+||+.+++... ...+.......+|+|+ +..+ ++...++. |.++|+.+
T Consensus 265 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpD-G~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 265 GAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTEPSWHPD-GKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCC
Confidence 3568999 8887765 566775 7777888776543 2244455678899995 4555 44444555 44455554
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+. ....++... .....+|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|+|..
T Consensus 340 g~---------~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~ 406 (448)
T PRK04792 340 GK---------VSRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTM 406 (448)
T ss_pred CC---------EEEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCE
Confidence 21 111122222 2345689999987776654 34 45667888776533 33121 1224579999998
Q ss_pred EEEEEeCCCe
Q 035500 592 CLLLLHLTTM 601 (606)
Q Consensus 592 LLaTgS~Dgt 601 (606)
++.+...++.
T Consensus 407 I~~~~~~~g~ 416 (448)
T PRK04792 407 VIYSTTYQGK 416 (448)
T ss_pred EEEEEecCCc
Confidence 8777766553
No 274
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.76 E-value=9.2e-06 Score=82.27 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=58.5
Q ss_pred cCCCceeEEEccccchhccccccccccccEEecccCC--CcccccccccccCccccEEEcccccccchhhhhHHhhcCCc
Q 035500 122 QVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCS--SLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPY 199 (606)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~--~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~ 199 (606)
-.|-.-+-|.++.....-+-.+|.+++|++|.|. +| ++..==+-.-.+.|+|+.|.+++|+|.-+ .|+..|.+|+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcc
Confidence 3344445566777777778889999999999998 77 55542222233449999999999999974 77777777777
Q ss_pred hhhhh
Q 035500 200 LMELR 204 (606)
Q Consensus 200 l~~l~ 204 (606)
|..|.
T Consensus 118 L~~Ld 122 (260)
T KOG2739|consen 118 LKSLD 122 (260)
T ss_pred hhhhh
Confidence 77665
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.75 E-value=3.4e-05 Score=77.72 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=87.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe------EEEEeCCCCCCCcccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC------VRLFDLNHIPPKVADA 522 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt------IklWDl~~~~~~~~~l 522 (606)
-++-+++|+.||.+.+++.+.-..+....-..|.+. .+.+... .++ ++.++.=|+ .+.|+++..+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~-~i~s~~~g~~n~~d~~~a~~~~p~~------ 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGN-SILSGGCGNWNAQDNFYANTLDPIK------ 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-ccc-EEecCCcceEeeccceeeecccccc------
Confidence 456899999999999999775211110000112111 1122222 122 333333333 3444444311
Q ss_pred cCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 523 RGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
..+........|.+++-||.. +.++.|+.||.+.+||.|+... +..+. +|+.+|+.|.|+|..+.-|.|+++||
T Consensus 171 ---t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 171 ---TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred ---cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCC
Confidence 011111123449999999986 5788889999999999998744 44555 89999999999998887788999999
Q ss_pred eE
Q 035500 601 MS 602 (606)
Q Consensus 601 tI 602 (606)
.+
T Consensus 247 sl 248 (319)
T KOG4714|consen 247 SL 248 (319)
T ss_pred cE
Confidence 75
No 276
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00023 Score=75.60 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++.++|+|.+..++..++.+.+|+|.|+++...+..+. .| ..+++.+|.-++...++.|-..|.|.+||++....
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~-- 270 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG-- 270 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccceeeehee--cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc--
Confidence 88999999777799999999999999999988887665 44 78999999987778899999999999999998532
Q ss_pred ccccCCcceEEeec---CCCeEEEE------EccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYD---FEQLTSVH------VNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~------~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
++..+.. -.+|..|+ ..+.+.+++.++.+ +..|.+... ....+.+.+..+.+.++++++.
T Consensus 271 -------~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 271 -------PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred -------hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 2222221 22333332 23345566666554 567776632 3344444334678888888888
Q ss_pred CCeEEEEEeC
Q 035500 589 SPLCLLLLHL 598 (606)
Q Consensus 589 g~~LLaTgS~ 598 (606)
+.++++|.-.
T Consensus 342 snh~l~tyRs 351 (463)
T KOG1645|consen 342 SNHLLLTYRS 351 (463)
T ss_pred cceEEEEecC
Confidence 8888887655
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.69 E-value=5.3e-05 Score=91.89 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=105.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE---ECCCeEEEEeCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG---SDSGCVRLFDLNHI 515 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg---S~DgtIklWDl~~~ 515 (606)
||+.+.|+- .|+.+..+..||.+-+|.+. .+. ++....|.....++.|-. ..++++ ++++.+.+||-...
T Consensus 2253 ~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~--~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2253 RVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKP--YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred hhhhhhhcc-cCCceeeeccCCceeecccC-Ccc--eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccC
Confidence 456677777 88889999999999999987 233 334458898999999985 456665 46889999997664
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.. ...+. --|.+.++++++-|..++++|||.+|.|++||++..+..+.++. ++ .+..|++
T Consensus 2326 ~~-------~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~--~~~~f~~ 2385 (2439)
T KOG1064|consen 2326 PM-------NSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD--TREYFVT 2385 (2439)
T ss_pred cc-------cceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh--hhheeec
Confidence 32 23333 33566799999999999999999999999999999888877772 33 2335788
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+..|.+++
T Consensus 2386 ~ss~g~ikI 2394 (2439)
T KOG1064|consen 2386 GSSEGNIKI 2394 (2439)
T ss_pred cCcccceEE
Confidence 888887764
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0017 Score=71.45 Aligned_cols=120 Identities=16% Similarity=0.277 Sum_probs=84.2
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE--EEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL--VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L--aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
.++++.+++ |... .+++ ...++|+++.|+|. +.-+ +-|-.=-.+.|+|++.. ++..+ +.++=
T Consensus 251 q~Lyll~t~-g~s~-~V~L-~k~GPVhdv~W~~s-~~EF~VvyGfMPAkvtifnlr~~-----------~v~df-~egpR 314 (566)
T KOG2315|consen 251 QTLYLLATQ-GESV-SVPL-LKEGPVHDVTWSPS-GREFAVVYGFMPAKVTIFNLRGK-----------PVFDF-PEGPR 314 (566)
T ss_pred ceEEEEEec-CceE-EEec-CCCCCceEEEECCC-CCEEEEEEecccceEEEEcCCCC-----------EeEeC-CCCCc
Confidence 367777776 3322 2233 34789999999994 4444 33445668889998862 33332 34556
Q ss_pred EEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 538 TSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+++-|+|.|++++.+|-+ |.+-+||..+.+.+..+.- ..-+-..|+|+|.+++ |++..
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~fl-TATTa 375 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFL-TATTA 375 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEE-EEecc
Confidence 888899999988888765 8999999999888887772 4456689999999855 44433
No 279
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.68 E-value=0.00024 Score=74.06 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=108.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCC-----CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGG-----TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH-----~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.++.++. |...+.++ .|-+|.+|+++- .+....+...+| +.-|++..|+|...+.++-.|.-|+|++-|++
T Consensus 167 iNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 167 INSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 78888988 88777766 578899999864 233333333344 34588899999888889889999999999999
Q ss_pred CCCC--Ccccc---cCCcceEEe-ec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeEEEcCCCC--------
Q 035500 514 HIPP--KVADA---RGNSSVATY-YD-FEQLTSVHVNSTDDQFLASGYSKNVALYDIN-TEKPLQLFTDMHR-------- 577 (606)
Q Consensus 514 ~~~~--~~~~l---~~~~~i~t~-~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v~~l~~gH~-------- 577 (606)
.... ..+.+ +..+.-+.+ .. -..|.++.|++.|+++++-.. -+|++||++ ..+++.+.+ .|.
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-vh~~lr~kLc~ 322 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-VHEYLRSKLCS 322 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-ehHhHHHHHHH
Confidence 5311 00000 000000111 11 245889999999999998876 799999995 456776666 342
Q ss_pred ----CCe---EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 ----EPI---NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ----~~I---~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..| ..++|+.++.+ ++|||.....|.
T Consensus 323 lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frv 355 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRV 355 (433)
T ss_pred HhhccchhheeEEEEcCCcce-EecccccceEEE
Confidence 222 46789888875 789998887765
No 280
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.62 E-value=2.4e-05 Score=86.55 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=49.4
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=++||||.|.|..+. -+|.=++|..|+|. +|+||-+.++||..+.+|.+|-+.+|||+-|-- .+...||.|..|.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~--r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ--RSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCH--HHhhhcchhhhhh
Confidence 355666666665443 55666777777777 777777777777777777777777777776632 3333466666554
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.59 E-value=0.0014 Score=72.41 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred eEEEEcCCCCCEEEEEe-CCCcEEEEE--CCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---CeEEEEeCC
Q 035500 441 RQFEYNPSNPSLMAFGT-LDGEVIVIN--HEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GCVRLFDLN 513 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs-~DGtVrIWD--i~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gtIklWDl~ 513 (606)
...+|+| ||+.|+..+ .+|...+|. +.. +.....+. .+...+....|+| ++..|+..+.+ ..|.+||+.
T Consensus 284 ~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt--~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 284 GNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT--KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEec--cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECC
Confidence 3567999 998887765 467666665 332 22222222 4445677899999 45666655433 368899988
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++. ...+. ....+....|+|+|+.++..+. ...|.+||+..++...... ..+.+...+|+|..
T Consensus 360 ~g~-----------~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 360 TGR-----------DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred CCC-----------eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 742 11222 2234677899999987664432 3578899998877655444 34567778888754
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00029 Score=77.00 Aligned_cols=148 Identities=11% Similarity=0.029 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-Cc----eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GN----VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~----~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|+.++--. +.+-+++++.|++|++|.++. |. ..-.+....|+.+|.++-|.. +-+.++ |-||-|.+||.--
T Consensus 738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--SCDGGIHLWDPFI 813 (1034)
T ss_pred hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--eccCcceeecccc
Confidence 44433333 667888999999999999754 21 122344558999999999986 435555 4589999999765
Q ss_pred CCCCcccccCCcceEEe---ecCCCeEEEEEccC--CCEEEEE-eCCCcEEEEECCCCceeEEEcC----CCCCCeEEEE
Q 035500 515 IPPKVADARGNSSVATY---YDFEQLTSVHVNST--DDQFLAS-GYSKNVALYDINTEKPLQLFTD----MHREPINVAK 584 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~---~~~~~V~sV~~sp~--g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~----gH~~~I~sV~ 584 (606)
+. ++... ..++.+..|..-|. ..++++| +...+|+++|.|.++-+.+++. +-...+.+++
T Consensus 814 gr----------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 814 GR----------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cc----------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 32 22111 12333333333333 3455555 7789999999998876555542 2345688999
Q ss_pred EeCCCCeEEEEEeCCCeE
Q 035500 585 FSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtI 602 (606)
..|.|.++ |.|=..|.|
T Consensus 884 Va~~GN~l-Aa~LSnGci 900 (1034)
T KOG4190|consen 884 VADKGNKL-AAALSNGCI 900 (1034)
T ss_pred eccCcchh-hHHhcCCcE
Confidence 99999874 444444443
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.58 E-value=0.0018 Score=72.07 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=78.3
Q ss_pred EEEEEEeeCCCCEEEEE----ECCCeE----EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC
Q 035500 485 VLGLCWLKKYPSKLVAG----SDSGCV----RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 485 V~~L~fsp~~~~~LaSg----S~DgtI----klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg 556 (606)
..++.|+...+..+.|. |.+|.+ ++|++...+. . ...+.++....+|.+.+++|+...++.|+.||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-----q-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-----Q-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-----e-EEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 45666665555555553 334432 3455544221 0 23455666788899999999999999999999
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.|.+||..++..... + +.-..+.++|||+|. ++++|+.-|.+.|+
T Consensus 282 SiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~ga-i~~V~s~qGelQ~F 326 (545)
T PF11768_consen 282 SIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGA-IFVVGSEQGELQCF 326 (545)
T ss_pred eEEEEEcCCCeeeee-e--ecccceEEEEcCCCc-EEEEEcCCceEEEE
Confidence 999999987744332 2 345678899999998 68899998988774
No 284
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=5.6e-05 Score=77.99 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=76.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
|-|.++||+.|+ +.-+.+=-.--..-.+||||.|.|+...+...+.+|..|.|. +|-++++. +--.-+-|.++|.+
T Consensus 284 q~LtelDLS~N~--I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL--ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc--hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhhh-hhHhhhcCEeeeeh
Confidence 567788888743 333433333345567899999999999999999999999999 88888884 45667889999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.+|.|..| ..|.||=||+.|.
T Consensus 360 a~N~iE~L----SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 360 AQNKIETL----SGLRKLYSLVNLD 380 (490)
T ss_pred hhhhHhhh----hhhHhhhhheecc
Confidence 99888777 8999999998775
No 285
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=1.9e-05 Score=81.38 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=78.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc--h---h-ccccccccccccEEecccCCCcccc-cccccccCc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN--I---R-KLNMVGRFMHLNTLSLDFCSSLASL-HEDCFSCMP 172 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~l~~~~~~~~l~tl~l~~~~~~~~~-~~~~~~~~p 172 (606)
-|+...|++||++.-=.+.+=|..--+-.++.|..++ + . +.+..-.|+++..+.+. .++|... .|.=|+-+|
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~-e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVC-EGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeee-cCcccchhhcccCCCCC
Confidence 3778888888876654444444444444555554332 1 1 22233369999999999 8888877 345588999
Q ss_pred cccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 173 YLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+-+|.+..|+|- -|..+.||.++|+|+.||...|+
T Consensus 225 ~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 225 SLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence 9999999999997 79999999999999999966655
No 286
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.49 E-value=0.00016 Score=87.25 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=73.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
..||+++|+++.+....-.+++..--+=+.|||++|.+...--.+.+.+|++|+|. +|.++......|..+++|+.|.|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChHHhcCCCCCEEEC
Confidence 56888888887765444444444444567788888887654444568888888888 67776554455788888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++... .-.++.+|++|+.|.+..|
T Consensus 172 ~~n~l~~~--~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 172 GGNVLVGK--IPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ccCccccc--CChhhhhCcCCCeeeccCC
Confidence 88876532 1235677888888876653
No 287
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=3.7e-05 Score=78.59 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=38.4
Q ss_pred hhccCCCCcc--cchhhHHHHHhhCCCceeccCCCCCcchHHHHHH
Q 035500 309 YISHHPSPIC--FEKHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352 (606)
Q Consensus 309 ~l~~~~npi~--~~~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ 352 (606)
-+-+..||+| .-.+||..|+-.||.|+-||+.++++.|-+.|.+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr 137 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALR 137 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHh
Confidence 5557889998 5688999999999999999999999988887763
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.0075 Score=66.53 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=87.1
Q ss_pred eeEEEEcCCCCCE-EEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCC
Q 035500 440 PRQFEYNPSNPSL-MAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~-LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~ 513 (606)
...-.|+| +|+. ++..+. +..|.++|+.+++...... ..+.+....|+|++...+++.+.++ .|.++|+.
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34567999 8874 664443 3568999998887655332 3445667889995544555665554 56666766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGY-S--KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~-D--g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
.+. ...+.. ........|+|+|+.++-.+. . ..|.++|+.+++..+....+. ....|+|+|
T Consensus 266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG 330 (419)
T PRK04043 266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYK 330 (419)
T ss_pred CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCC
Confidence 531 122221 222334579999986665543 2 368888998877644333122 124899999
Q ss_pred CeEEEEEeCC
Q 035500 590 PLCLLLLHLT 599 (606)
Q Consensus 590 ~~LLaTgS~D 599 (606)
++++.++...
T Consensus 331 ~~Ia~~~~~~ 340 (419)
T PRK04043 331 NYIVYSSRET 340 (419)
T ss_pred CEEEEEEcCC
Confidence 9877776543
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.002 Score=73.66 Aligned_cols=137 Identities=13% Similarity=0.129 Sum_probs=98.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC----CCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK----YPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~----~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
+|.++||||.||+|.|..+-+++....+.+ ..++.+++++|+ ..+.+++||.-| +.++.-+-.+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn------- 150 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN------- 150 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------
Confidence 689999999999999999888777665543 457999999985 356799999998 66665332211
Q ss_pred CcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe------EEEEEeCCCCeEEEEEeC
Q 035500 525 NSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI------NVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 525 ~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I------~sV~fsP~g~~LLaTgS~ 598 (606)
+.++..-.+.++|.+|.|+ |+++|=++++| |++||..+++.+..++..| ..+ ..+.|.+... ++.|=.
T Consensus 151 k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~~~~--LVIGW~ 224 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQDEDR--LVIGWG 224 (846)
T ss_pred ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC-CCCCcccCCCceEecCCCe--EEEecC
Confidence 3344344467889999997 88888887765 7999999998877777555 222 3466766554 445544
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|.+-
T Consensus 225 d~v~ 228 (846)
T KOG2066|consen 225 DSVK 228 (846)
T ss_pred CeEE
Confidence 4433
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.0005 Score=77.24 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE----E---------EEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA----C---------YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v----~---------~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
+..|++|+. ..+++|.||.||.++|-.+.+...- . ...+.||.+.|.-+.|+- +..+|.|...+|
T Consensus 16 kL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 16 KLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSG 93 (1189)
T ss_pred eEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCCc
Confidence 477899999 7789999999999999987652211 0 112459999999999996 557888888999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAK 584 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~ 584 (606)
.|-+|-+-.+.= . .....-+.++.|.+++|+.+|..++..-.||.|.+=.+...+. -+.++ ......+.
T Consensus 94 lIiVWmlykgsW-----~--EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ 163 (1189)
T KOG2041|consen 94 LIIVWMLYKGSW-----C--EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVL 163 (1189)
T ss_pred eEEEEeeecccH-----H--HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hhecccee
Confidence 999999877410 0 0111222355699999999999888888888877665543221 01122 11223477
Q ss_pred EeCCCCe
Q 035500 585 FSHHSPL 591 (606)
Q Consensus 585 fsP~g~~ 591 (606)
|+++...
T Consensus 164 ws~D~~~ 170 (1189)
T KOG2041|consen 164 WSEDLEQ 170 (1189)
T ss_pred ecccHHH
Confidence 8877653
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.41 E-value=0.0025 Score=64.79 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=90.0
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCC--CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTN--SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~--~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
-+..++.|+++++.+++.+..... -|.. .+..+.+++ ++.++++.++...|-.|.+..... .-+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~----~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~se--------y~~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFA----VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESE--------YIEN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCcccce----eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccc--------eeee
Confidence 456778899999999875443322 2222 277888998 678999999999999999876321 1112
Q ss_pred Eee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-e----EEEcCCCCCCeEEEEEeCCCC
Q 035500 530 TYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-L----QLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 530 t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v----~~l~~gH~~~I~sV~fsP~g~ 590 (606)
+.. ..+.-.+.+|+..+..||+++.||++.|||+|.... . .+-+ .|.+++..+.|+|.|.
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp-~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP-HHNGAFRVCRFSLYGL 263 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCC-CCCCceEEEEecCCCc
Confidence 122 233457788999999999999999999999996433 2 2233 4899999999998765
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.38 E-value=0.016 Score=58.48 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=101.5
Q ss_pred eceeEEEEcCCCCCEEEEEeCC--------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD--------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D--------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.++..+++.| +|++.++.... |.|..++.. ++...... .-....+|+|+|++..++++-+..+.|..
T Consensus 86 ~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 86 NRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp EEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred CCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheeecccccceeEE
Confidence 4588999999 89888776654 568888877 55443332 23457899999954334567788889998
Q ss_pred EeCCCCCCCcccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-C
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS-H 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs-P 587 (606)
+++....... .....+..+.... ..-.+++..+|+++++....+.|.++|.+ |+.+..+..+ ...+++++|. |
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~ 235 (246)
T PF08450_consen 161 FDLDADGGEL---SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGP 235 (246)
T ss_dssp EEEETTTCCE---EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEEST
T ss_pred Eeccccccce---eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECC
Confidence 8887532100 0011111222222 36789999999998888888999999998 8888877754 4589999994 7
Q ss_pred CCCeEEEEEe
Q 035500 588 HSPLCLLLLH 597 (606)
Q Consensus 588 ~g~~LLaTgS 597 (606)
+...|++|.+
T Consensus 236 ~~~~L~vTta 245 (246)
T PF08450_consen 236 DGKTLYVTTA 245 (246)
T ss_dssp TSSEEEEEEB
T ss_pred CCCEEEEEeC
Confidence 7788888875
No 293
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00038 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=77.6
Q ss_pred EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEE
Q 035500 462 VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVH 541 (606)
Q Consensus 462 VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~ 541 (606)
|++.+..+.+...... +|...|.+++|+|.+.+++..++.+..|+|.|+++ ...+.++..+.++++++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAYNQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheeccCCceeee
Confidence 6777766555544333 78889999999998888999999999999999998 45677787788999999
Q ss_pred EccCC-CEEEEEeCCCcEEEEECCCCc
Q 035500 542 VNSTD-DQFLASGYSKNVALYDINTEK 567 (606)
Q Consensus 542 ~sp~g-~~LaSgs~Dg~I~IWDlrt~k 567 (606)
|.-+. +.+.+|-..|.|.+||+|..+
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCC
Confidence 99887 577788888999999999653
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.37 E-value=0.00089 Score=69.15 Aligned_cols=163 Identities=14% Similarity=0.236 Sum_probs=107.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE---EeccCCC------------CCEEEEEEeeC-CCCEEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY---IPSIGGT------------NSVLGLCWLKK-YPSKLVAGS 502 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~---~~~~gH~------------~~V~~L~fsp~-~~~~LaSgS 502 (606)
+++++.|.. .|.++|+|...|+|.+|.-+...-..+ -++.+|. ..|..+.|... +-..++-.+
T Consensus 28 ~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 28 KITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred eeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 377889988 889999999999999998654331111 0122332 45888999653 334577778
Q ss_pred CCCeEEEEeCCCCCCCc-----------ccccC---------------------CcceEEee--cCCCeEEEEEccCCCE
Q 035500 503 DSGCVRLFDLNHIPPKV-----------ADARG---------------------NSSVATYY--DFEQLTSVHVNSTDDQ 548 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~-----------~~l~~---------------------~~~i~t~~--~~~~V~sV~~sp~g~~ 548 (606)
.|.+|++|.+......+ .++.+ ..|.+.+. |..-+++++++.+.+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 89999999987531100 00000 01222221 2333899999988888
Q ss_pred EEEEeCCCcEEEEECCCCce---eEEEcCCC-----CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 549 FLASGYSKNVALYDINTEKP---LQLFTDMH-----REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 549 LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH-----~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++ +|-.|.+|.+.-... +..++ +| +.-|++..|+|....++.-++..|.|+.
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred eeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 8776 457899998874322 22333 34 3568999999999888998999998874
No 295
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.33 E-value=0.012 Score=62.99 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=99.3
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCc--eEE--EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGN--VAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~--~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.++.|+| +++++++.. ....|++|++.... ... .+.. .....-..++|+|++....+..-.+++|.++++..
T Consensus 146 ~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 146 PHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp EEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 66888999 888777754 34579999987644 322 2222 34456789999995433446666788999999883
Q ss_pred CCCCcccccCCcceEEe----ecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC--CCce--eEEEcCCCCCCeEEEEE
Q 035500 515 IPPKVADARGNSSVATY----YDFEQLTSVHVNSTDDQFLASG-YSKNVALYDIN--TEKP--LQLFTDMHREPINVAKF 585 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~----~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlr--t~k~--v~~l~~gH~~~I~sV~f 585 (606)
....... ...+.++ .+......|+++|+|++++++. .++.|.+|++. +++. +..+. .....-+.+++
T Consensus 224 ~~g~~~~---~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~ 299 (345)
T PF10282_consen 224 SDGSLTE---IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAF 299 (345)
T ss_dssp TTTEEEE---EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE
T ss_pred cCCceeE---EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEE
Confidence 2111000 0011111 1123578999999999766664 56889999994 3443 33443 12345789999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+|.++++++..++.|.+
T Consensus 300 s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp -TTSSEEEEEETTTTEEEE
T ss_pred eCCCCEEEEEecCCCeEEE
Confidence 9999998888877777764
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.32 E-value=0.014 Score=63.39 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=105.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-eEEEEeCCCCCCCccccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-CVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-tIklWDl~~~~~~~~~l~ 523 (606)
|++.+|+++|..|. |+..|.+...+-.++ .+|.+.|.-..+.. ++..++-|..|| .+-++|..++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq----v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ----VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE----cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-------
Confidence 66678999999885 667787766555544 27888898888876 445788999999 99999999842
Q ss_pred CCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 524 GNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 524 ~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
+..+. .-+.|.++..+|+|+.++.+-....+-++|+.++++...-+ ...+-|+...|||+++| +|-+=-+|.
T Consensus 394 ----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr~-iAYafP~gy 466 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSRW-IAYAFPEGY 466 (668)
T ss_pred ----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCcee-EEEecCcce
Confidence 23333 45669999999999999999888899999999998754333 45678999999999997 554444443
No 297
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.28 E-value=4.6e-05 Score=84.66 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCEEEEEeC----CCcEEEEECCCC--ceEEEEeccC-CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL----DGEVIVINHENG--NVACYIPSIG-GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~----DGtVrIWDi~tg--~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
.++++|++-|.++||+|-. |..+.|||+.++ .+.....+.+ --.....++|.. +..++.+|.....++++|+
T Consensus 105 Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 105 CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred ccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhh
Confidence 6789999988899998853 567899999876 2222222222 334456899984 7788999999999999999
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE-CCCC-ceeEEEc---CCCCCCeEEEEEe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYD-INTE-KPLQLFT---DMHREPINVAKFS 586 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWD-lrt~-k~v~~l~---~gH~~~I~sV~fs 586 (606)
+..... ...+ ....+..+.+.| .++++++-. ||.|.+|| .++- ++++.+. ......+..++|.
T Consensus 184 Rqs~~~------~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 184 RQSLDS------VSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhh------hhhh----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence 953211 0011 112366777888 578888776 89999999 4443 3333333 1122349999999
Q ss_pred CCCCeEEEEEeCCC
Q 035500 587 HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 P~g~~LLaTgS~Dg 600 (606)
|..+.++++.+.|.
T Consensus 253 Ptrtglla~l~RdS 266 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDS 266 (783)
T ss_pred cCCcchhhhhccCc
Confidence 99988899988885
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.032 Score=59.01 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=110.6
Q ss_pred ceeeecccccccCceeeceeEEEEcCCCCCEEEEEeC-CCcEEEEECCC-CceEEEEeccCCCCC----------EEEEE
Q 035500 422 HPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTL-DGEVIVINHEN-GNVACYIPSIGGTNS----------VLGLC 489 (606)
Q Consensus 422 ~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~-DGtVrIWDi~t-g~~v~~~~~~gH~~~----------V~~L~ 489 (606)
+.+....+....|.. ...+++++ ++++++++.. -|.|.|+-++. |..........|.++ +....
T Consensus 76 G~Lt~ln~~~~~g~~---p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 76 GRLTFLNRQTLPGSP---PCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred CeEEEeeccccCCCC---CeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 344433344444542 24678999 8888888875 58999999865 666555555567666 88999
Q ss_pred EeeCCCCEEEEEE--CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCC
Q 035500 490 WLKKYPSKLVAGS--DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTE 566 (606)
Q Consensus 490 fsp~~~~~LaSgS--~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~ 566 (606)
+.| ++++++++. .| .|.+|++..+... ......++....-..|.|||++++.....+ +++|.+|.....
T Consensus 152 ~tP-~~~~l~v~DLG~D-ri~~y~~~dg~L~------~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 152 FTP-DGRYLVVPDLGTD-RIFLYDLDDGKLT------PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred eCC-CCCEEEEeecCCc-eEEEEEcccCccc------cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999 557777763 45 6889999864321 111112233444688999999998777664 799999999873
Q ss_pred --ce-----eEEEcCC--CCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 567 --KP-----LQLFTDM--HREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 567 --k~-----v~~l~~g--H~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
+. +.+++.. -....-+|..+|+|+++.|+-=....|
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 21 2222221 134567788999999887764443333
No 299
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.27 E-value=0.035 Score=59.38 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCCEEEEEeC----CCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL----DGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~----DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++++| ++++|.+++. +|.|..|.+.. +.....-...........++.+| ++.+++++. .+|+|.++++
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEc
Confidence 66789999 8888888876 57999998775 34332212111234566788998 556766665 5999999999
Q ss_pred CCCCCCcccccCCcceEEeec-----------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCc--e--eEEEcCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD-----------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEK--P--LQLFTDMH 576 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-----------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k--~--v~~l~~gH 576 (606)
...... ......+.+ .....++.++|+++++++.. ....|.+|++.... . ...+....
T Consensus 117 ~~~g~l------~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 117 DDDGSL------GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp CTTSEE------EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred cCCccc------ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 874211 111112211 12278999999999777764 33589999998654 3 22333234
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...-+.+.|+|++++++++.-.+++|..
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 5677899999999999888888877653
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.26 E-value=0.013 Score=63.77 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=99.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCC-cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG-EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG-tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+-..+.- +++-++.|..|| .+-|+|..+++..... +.-+.|.++..++ ++.+++.+-....+-+.|+.++..
T Consensus 362 VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv- 435 (668)
T COG4946 362 VRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV- 435 (668)
T ss_pred eEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe-
Confidence 45455555 667889999999 8999999988765432 5567899999998 667788888888888888888532
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
+... ...-|+...|||++.++|-+--+ ..|++||+..++....-. -...=.+-+|.|++.++
T Consensus 436 ----------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 436 ----------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred ----------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 2222 23449999999999999988655 469999999888754433 12333456788888875
Q ss_pred E
Q 035500 593 L 593 (606)
Q Consensus 593 L 593 (606)
.
T Consensus 504 Y 504 (668)
T COG4946 504 Y 504 (668)
T ss_pred E
Confidence 4
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0023 Score=73.09 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++|++++ +.+++.|+-+|.|++++.... .... ..|... . ..|.+++|||.||+|.|-.+-+.
T Consensus 42 is~~av~---~~~~~~GtH~g~v~~~~~~~~-~~~~---~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~---- 103 (846)
T KOG2066|consen 42 ISCCAVH---DKFFALGTHRGAVYLTTCQGN-PKTN---FDHSSS------I-LEGEYVASCSDDGKVVIGSLFTD---- 103 (846)
T ss_pred HHHHHhh---cceeeeccccceEEEEecCCc-cccc---cccccc------c-cCCceEEEecCCCcEEEeeccCC----
Confidence 4455664 479999999999999998743 2221 144333 2 46789999999999999888773
Q ss_pred ccccCCcceEEeecCCCeEEEEEccC-----CCEEEEEeCCCcEEEEECCC-CceeE-EEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNST-----DDQFLASGYSKNVALYDINT-EKPLQ-LFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~-----g~~LaSgs~Dg~I~IWDlrt-~k~v~-~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....++..+.++.+|+++|+ .+.|++||.-| +.++.-+- |+... .+. .-.++|.+++|. |. +
T Consensus 104 ------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~-l 172 (846)
T KOG2066|consen 104 ------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GN-L 172 (846)
T ss_pred ------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--Cc-E
Confidence 34567788899999999998 46999999988 77765442 22211 333 356899999996 33 6
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
+|=++.+|+-
T Consensus 173 IAWand~Gv~ 182 (846)
T KOG2066|consen 173 IAWANDDGVK 182 (846)
T ss_pred EEEecCCCcE
Confidence 7777777754
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.0034 Score=71.47 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=105.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-----------CCEEEEEECCCeEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-----------PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-----------~~~LaSgS~DgtIklW 510 (606)
++.|+| .| ++|-|+. ..|.|-|..+-+.+..++ -|...|+.+.|.|.. .-+++++-..|.|.+|
T Consensus 20 A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 20 AADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 467888 44 7877775 458899988888877776 788999999998732 1247788889999999
Q ss_pred eCCCCCCCcccccCCcceEEeec-CCCeEEEEEccC---C-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 511 DLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNST---D-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~---g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
|+... ..+.-+.+ .+++.+++|-|. + ..+++-....++-+|+..+|+.+.....+ .....|+.+
T Consensus 95 d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~ 163 (1062)
T KOG1912|consen 95 DFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRV 163 (1062)
T ss_pred Eehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-Ccceeeeee
Confidence 99884 22334444 456888888764 3 46777777789999999999999888854 367778999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
.|.+..-+..-+..|.+
T Consensus 164 DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred CCCCcceEEEEccCceE
Confidence 99765445444444443
No 303
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.20 E-value=0.018 Score=62.04 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE---------CCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 460 GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS---------DSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS---------~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
++|.|.|..+++.+..+.. |.... .+ ++|++....++.+ .+..|.+||..+.+ .+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----------~~~~ 92 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----------PIAD 92 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----------EEeE
Confidence 8999999999999888773 33222 34 8885544555556 68999999999843 3433
Q ss_pred eec--------CCCeEEEEEccCCCEEEEEe-C-CCcEEEEECCCCceeEEEcC
Q 035500 531 YYD--------FEQLTSVHVNSTDDQFLASG-Y-SKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 531 ~~~--------~~~V~sV~~sp~g~~LaSgs-~-Dg~I~IWDlrt~k~v~~l~~ 574 (606)
+.. ...-...+++|+|++++... . +..|.+.|+.+++.+.++.-
T Consensus 93 i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 93 IELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 332 11234678899999888665 3 79999999999999888873
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.19 E-value=0.0028 Score=73.31 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---------CCeEEEEeCCCCCCC
Q 035500 448 SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---------SGCVRLFDLNHIPPK 518 (606)
Q Consensus 448 ~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---------DgtIklWDl~~~~~~ 518 (606)
.++.++.+|...|+|.+-|.++.+.+.++. .|.+.|.++... +++|+|||. |..|+|||++....
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra- 258 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFD--AHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA- 258 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeee--ccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhc-
Confidence 477899999999999999999999988776 999999887654 478999874 66889999998643
Q ss_pred cccccCCcceEEeecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCC-Cce---eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNST-DDQFLASGYSKNVALYDINT-EKP---LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt-~k~---v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
-.|+ ..+..-.-+.|+|. ...++.++..|...+-|..+ +++ +..+. ...+.+....+++.+. .+
T Consensus 259 ------l~PI---~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~-al 327 (1118)
T KOG1275|consen 259 ------LSPI---QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGD-AL 327 (1118)
T ss_pred ------cCCc---ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCc-eE
Confidence 1222 11111245678887 46888888889999999432 222 23333 4566799999999998 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|-|..+|.|..
T Consensus 328 afgd~~g~v~~ 338 (1118)
T KOG1275|consen 328 AFGDHEGHVNL 338 (1118)
T ss_pred EEecccCcEee
Confidence 88888887753
No 305
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.00026 Score=77.65 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=70.8
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHH--hhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAA--ISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~--l~~~~~l~~l~~ 205 (606)
++|||++|+|.+++.+..+..|+.|++. .|.|+.+.. |+.+++|..|.+..|+|..+ .- +..+.+|.+|..
T Consensus 121 ~~L~ls~N~I~~i~~l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~L~~l~l~~n~i~~i----e~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 121 QVLDLSFNKITKLEGLSTLTLLKELNLS-GNLISDISG--LESLKSLKLLDLSYNRIVDI----ENDELSELISLEELDL 193 (414)
T ss_pred hheeccccccccccchhhccchhhheec-cCcchhccC--CccchhhhcccCCcchhhhh----hhhhhhhccchHHHhc
Confidence 4566666666666666666666666666 666666654 55666666666666666655 44 466666666651
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh----hhcccchhhh--hccCCCCCCCcce
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK----YLRTMNLMEL--SSCLSPNLNGHAE 279 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--l~~~~~~~~~~~~ 279 (606)
-+ ..-..++.-+-...+ -..+..+ ++++.+.+.. |+.+++..|++-+
T Consensus 194 ~~------------------------n~i~~i~~~~~~~~l---~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 194 GG------------------------NSIREIEGLDLLKKL---VLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cC------------------------CchhcccchHHHHHH---HHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 11 000001100000000 0112222 7777777777 8888899999988
Q ss_pred ecccccC
Q 035500 280 MLDEVND 286 (606)
Q Consensus 280 ~~~~~~~ 286 (606)
+.++++.
T Consensus 247 ~~~~~~~ 253 (414)
T KOG0531|consen 247 SPEGLEN 253 (414)
T ss_pred ccccccc
Confidence 8644444
No 306
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.16 E-value=0.0081 Score=63.02 Aligned_cols=160 Identities=10% Similarity=0.125 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC-CC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH-IP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~-~~ 516 (606)
++++++++ +...|+.|-.+|+|.=+-... .+....-....|...|..+.|+. .+.++++++.|..+. |.... +.
T Consensus 71 ~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~-~hc~e~~~ 147 (404)
T KOG1409|consen 71 CSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFA-WHCTESGN 147 (404)
T ss_pred ceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceE-EEeeccCC
Confidence 77889998 888999999999998887543 12111112347899999999985 668899999998764 54332 21
Q ss_pred CCc--------ccc-----------------------cCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 517 PKV--------ADA-----------------------RGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 517 ~~~--------~~l-----------------------~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
... +.+ ..-.++.++.++ ..+.+.+|.|....+++|..|..+.+||+-
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 100 000 112345566654 569999999999999999999999999998
Q ss_pred CCcee-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 565 TEKPL-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 t~k~v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
-.+-+ .++. +|...|..+..-+.-. .+.+++.||.|-|
T Consensus 228 g~~g~~~el~-gh~~kV~~l~~~~~t~-~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 228 GRKGTAYELQ-GHNDKVQALSYAQHTR-QLISCGEDGGIVV 266 (404)
T ss_pred CCcceeeeec-cchhhhhhhhhhhhhe-eeeeccCCCeEEE
Confidence 65554 4444 8999999988877655 4778888987764
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.14 E-value=0.015 Score=64.23 Aligned_cols=142 Identities=10% Similarity=0.060 Sum_probs=83.0
Q ss_pred eEEEEcCCCCCEEEEE-eCC--CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCCC
Q 035500 441 RQFEYNPSNPSLMAFG-TLD--GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNHI 515 (606)
Q Consensus 441 ~slafsP~dg~~LaSG-s~D--GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~~ 515 (606)
....|+| ||+.++.. +.+ ..|.++|..++.... +. .+........|+|++...+++....+ .|.+.|+.++
T Consensus 236 ~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT--~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 236 VVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT--NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEE-cc--cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3457999 88766654 333 567777887776543 22 33333345679995444444444444 4666666653
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---------CcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---------KNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
.. ...++.+.. ...|+|+|+.++..+.. ..|.+.|+.++... .+..+ .......|+
T Consensus 312 ~~---------~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~S 376 (419)
T PRK04043 312 SV---------EQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFS 376 (419)
T ss_pred Ce---------EeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEEC
Confidence 21 011222221 24899999977766543 36888898887653 34322 223358899
Q ss_pred CCCCeEEEEEeCCCe
Q 035500 587 HHSPLCLLLLHLTTM 601 (606)
Q Consensus 587 P~g~~LLaTgS~Dgt 601 (606)
|+|..++.+....+.
T Consensus 377 PDG~~I~f~~~~~~~ 391 (419)
T PRK04043 377 SDGGSIMFIKYLGNQ 391 (419)
T ss_pred CCCCEEEEEEccCCc
Confidence 999987766554443
No 308
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.13 E-value=0.00045 Score=51.58 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=33.9
Q ss_pred ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhc
Q 035500 147 MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK 196 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~ 196 (606)
++|++|.|. .|.|+.|+. -++.||+|+.|++.+|+|.++ ++|+|
T Consensus 1 ~~L~~L~l~-~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i----~~l~~ 44 (44)
T PF12799_consen 1 KNLEELDLS-NNQITDLPP-ELSNLPNLETLNLSNNPISDI----SPLSN 44 (44)
T ss_dssp TT-SEEEET-SSS-SSHGG-HGTTCTTSSEEEETSSCCSBE----GGGTT
T ss_pred CcceEEEcc-CCCCcccCc-hHhCCCCCCEEEecCCCCCCC----cCCCC
Confidence 478899999 889999975 388999999999999998876 55543
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.13 E-value=0.057 Score=55.61 Aligned_cols=155 Identities=16% Similarity=0.291 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----c-CCCCCEEEEEEeeCC-----CCEEEEEECCCeEEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----I-GGTNSVLGLCWLKKY-----PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~-gH~~~V~~L~fsp~~-----~~~LaSgS~DgtIklW 510 (606)
+-++||| |+.++|.+...|+|+|||+.... ...++- . .-..+|.++.|.+.. ...|+.-..+|.++-+
T Consensus 47 Rkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4678999 99999999999999999987433 222221 0 123567788886432 2347777888888877
Q ss_pred eCCCCCCCcccccCCcceE--Eeec--CCCeEEEEEccCCCEEEEEeCC-C----------cEEEEECCCCcee------
Q 035500 511 DLNHIPPKVADARGNSSVA--TYYD--FEQLTSVHVNSTDDQFLASGYS-K----------NVALYDINTEKPL------ 569 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~--t~~~--~~~V~sV~~sp~g~~LaSgs~D-g----------~I~IWDlrt~k~v------ 569 (606)
-+..+... +..... .+.. ...|+++.++|..++++.||.. . -+.-|-+-++.|-
T Consensus 125 ~vs~gt~q-----~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 125 LVSVGTNQ-----GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred EEEcccCC-----cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 76432110 011222 3332 3559999999998877777542 1 2444533332110
Q ss_pred --------------------EEE--cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 570 --------------------QLF--TDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 570 --------------------~~l--~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
..+ .......|..|..+|+|. +||+.+.+|.+-
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~ls 254 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLS 254 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEE
Confidence 000 112357899999999998 688999998774
No 310
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.11 E-value=0.029 Score=68.82 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC------------CCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG------------TNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH------------~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+..+++++.++.+.++-+.+++|++||.. +..+..+...+. -....+++++++++..+++-+..+.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45678988677788888899999999976 444433321111 12357899998443345555667789
Q ss_pred EEEeCCCCCCCcccccCC-cceEEeec--------CCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcC---
Q 035500 508 RLFDLNHIPPKVADARGN-SSVATYYD--------FEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTD--- 574 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~-~~i~t~~~--------~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--- 574 (606)
+.+|..++.. ..+.+. .....+.+ -..-+.|+++|+ +.++++.+.++.|++||..++.....-..
T Consensus 649 r~id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999876321 000000 00000000 112357999995 56777878889999999987754211110
Q ss_pred ----CC------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 ----MH------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 ----gH------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ -...+.++|+|++.+++++.+.++.||.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv 766 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA 766 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence 11 1234679999999988888888888875
No 311
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00065 Score=74.32 Aligned_cols=124 Identities=9% Similarity=0.093 Sum_probs=83.9
Q ss_pred EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe
Q 035500 475 YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG 553 (606)
Q Consensus 475 ~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs 553 (606)
...+.||...|..++-.. +.+.++|+|.|++|++|.++..... .....+..++. |+.+|.++.|-.+-..++++
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 334679998888887653 6778999999999999999874321 11244666777 56779999998777777654
Q ss_pred CCCcEEEEECCCCceeEEEcCC-CCCCeEEEEEeCC--CCeEEEEEeCCCeEEE
Q 035500 554 YSKNVALYDINTEKPLQLFTDM-HREPINVAKFSHH--SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~--g~~LLaTgS~DgtIRc 604 (606)
||.|.+||.-.++++..+.++ ..+.+..++--|. ...++|.++...+|+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence 688999999988886644432 2244444444333 3333444466666654
No 312
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.11 E-value=0.04 Score=59.36 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCCEEEEEe-C-CCcEEEEECCCCceEEEEeccC--------------C--CC-------------CEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGT-L-DGEVIVINHENGNVACYIPSIG--------------G--TN-------------SVLGL 488 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~-DGtVrIWDi~tg~~v~~~~~~g--------------H--~~-------------~V~~L 488 (606)
...++++| +|++++... . +..|-|.|+.+++.+..+..-+ | ++ .+...
T Consensus 107 ~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 107 PWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred cceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeee
Confidence 44788999 998888776 3 7899999999988877554211 0 00 01111
Q ss_pred E--------------EeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec--------CCCeEEEEEccCC
Q 035500 489 C--------------WLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTD 546 (606)
Q Consensus 489 ~--------------fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g 546 (606)
. |.+.++.+++.... |+|.+-|+....... ..++..+.. ...+.-++++|++
T Consensus 186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-----LPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee-----cceeeeccccccccccCCCcceeEEEcCCC
Confidence 1 12213344433333 888888865432110 112222211 1224459999999
Q ss_pred CEEEEEe----------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC-eEEEEEeCCCeEE
Q 035500 547 DQFLASG----------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP-LCLLLLHLTTMSR 603 (606)
Q Consensus 547 ~~LaSgs----------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~-~LLaTgS~DgtIR 603 (606)
+.++... ..+.|.++|..+++.+..+.- ...+..++++|+++ .++++...++.|.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 8666532 225899999999999998884 45899999999999 7777776677654
No 313
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00026 Score=76.33 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=98.1
Q ss_pred eccCCCcccchhHHHHHHHHhhccceEEEccCc-cccchHHH-hhccCCCceeEEEccccchhccc---cccccccccEE
Q 035500 78 ILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNI-TLRNDNLL-DLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTL 152 (606)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl 152 (606)
.++=++|.|.|.-++.++-.+= -|.+++|+.| ..++...+ +..|+ =|.|||++|.+.-+. ..|.|++|..|
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~---L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQT---LQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhH---HhhccccCCcccccccccccccccchhhh
Confidence 3567899999999999988774 4778899887 33333332 22221 367999999999887 66799999999
Q ss_pred ecccCCCcccccc-cc-----cccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 153 SLDFCSSLASLHE-DC-----FSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 153 ~l~~~~~~~~~~~-~~-----~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
|+. ++.|++|.+ || -.-+|+|+.|.+..|.|. =|..+..|.+|++|+.|+
T Consensus 277 nls-~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 277 NLS-STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hcc-ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 999 999999976 44 345999999999999988 599999999999999999
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0047 Score=68.14 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=94.0
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-----------CCeEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-----------SGCVRLF 510 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-----------DgtIklW 510 (606)
-+.||| .|.||+|-..-| |.+|-=++-..+..+ .|. .|.-+.|+| +..+|+|-|. -..+.||
T Consensus 215 yv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 215 YVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---YHP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---cCC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 467999 999999999988 889975554444333 454 688899999 7789998753 2578999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
|+.++.. ......++....+ .-..||.++.++|--.. ..|.||+..+-.++..-. ..-+.|....|+|.+
T Consensus 288 DI~tG~l-------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 288 DIATGLL-------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTS 358 (698)
T ss_pred Eccccch-------hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCc
Confidence 9999642 1222222333333 34689999999987776 679999887644432222 235678888899987
Q ss_pred CeEEE
Q 035500 590 PLCLL 594 (606)
Q Consensus 590 ~~LLa 594 (606)
. ++|
T Consensus 359 ~-llA 362 (698)
T KOG2314|consen 359 N-LLA 362 (698)
T ss_pred c-eEE
Confidence 6 454
No 315
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.03 E-value=0.0016 Score=67.73 Aligned_cols=107 Identities=20% Similarity=0.141 Sum_probs=64.4
Q ss_pred hccceEEEccCccccc---hHHHhhccCCCceeEEEccccchhcc------cccccc-ccccEEecccCCCcc-----cc
Q 035500 99 DQKLRVVDLSNITLRN---DNLLDLCQVGSSCHVLILRATNIRKL------NMVGRF-MHLNTLSLDFCSSLA-----SL 163 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~-~~l~tl~l~~~~~~~-----~~ 163 (606)
+.+|+.++|+++.+.. ..+..+.+. ..-+.|+|+.|++..- ..++.+ .+|..|.|. .+.++ .+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-RNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-CCcCCchHHHHH
Confidence 5677777777777753 334444444 5577777777776521 123455 677777777 55565 22
Q ss_pred cccccccCccccEEEcccccccch-hh-hhHHhhcCCchhhhhhcee
Q 035500 164 HEDCFSCMPYLMCLSMCETRIVNL-WT-TTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 164 ~~~~~~~~p~l~~l~~~~~~~~~l-~~-~~~~l~~~~~l~~l~~~~~ 208 (606)
. ..|..+++|+.|.|.+|.+..- .. -.+++.++++|++|.+.+|
T Consensus 158 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 158 A-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred H-HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2 3466667778888777776631 11 1235566677777776554
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.02 E-value=0.085 Score=53.24 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=95.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+..|.+.++.++++--..++|..|+..++.... +... ...++++...+ ..++.+..++ +.++|..++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~----- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK----- 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----SEEEEEEECTT-SEEEEEETTC-EEEEETTTTE-----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----CCceEEEEccC-CEEEEEEcCc-eEEEecCCCc-----
Confidence 456998777788887789999999998876543 3321 27788888424 5666666655 4555887742
Q ss_pred ccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCC--------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 522 ARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYS--------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 522 l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~D--------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
...+.... . ....+++++.|+|++.++.... |.|..++.. ++...... .-...+.++|+|++
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDG 145 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTS
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcc
Confidence 12233332 1 2338899999999988877654 457778877 55444443 34667899999999
Q ss_pred CeEEEEEeCCCeEE
Q 035500 590 PLCLLLLHLTTMSR 603 (606)
Q Consensus 590 ~~LLaTgS~DgtIR 603 (606)
+.++++-+..+.|.
T Consensus 146 ~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 146 KTLYVADSFNGRIW 159 (246)
T ss_dssp SEEEEEETTTTEEE
T ss_pred hheeecccccceeE
Confidence 98888877766553
No 317
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.01 E-value=0.00078 Score=81.46 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=62.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-c-ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||.++|+++.+-...- .-.- ..=++|+|++|++.. + +.++.+.+|.+|+|. .|.++..-.+.|..|++|+.|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p-~~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP-RGSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccC-cccc--CCCCEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChhhhhCcCCCee
Confidence 578888888876531100 0011 123568888887752 2 246677788888887 566655444557778888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++... .-..+.++++|++|.+..
T Consensus 194 ~L~~n~l~~~--~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 194 TLASNQLVGQ--IPRELGQMKSLKWIYLGY 221 (968)
T ss_pred eccCCCCcCc--CChHHcCcCCccEEECcC
Confidence 8877766432 124566677777776554
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.00058 Score=78.32 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-eEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-CVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-tIklWDl~~~~~~ 518 (606)
-+|++|+- +.++++.|+..|.|++|++.+|....... +|.++|+.+.-+.+++..|.+++... -..+|+....
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--- 1177 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--- 1177 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCcccccccc--ccccccccccccCCcceeeeeccccCchHHHhccccc---
Confidence 56889998 88999999999999999999999887655 99999999998875544555555544 5679998873
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCeEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPLCL 593 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~LL 593 (606)
..+..+|... .++.|+.....=+.|..-..+.+||+.++.++.++-.+ ..-.=+++.|+|....+|
T Consensus 1178 ------~~~~Hsf~ed---~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1178 ------GGPRHSFDED---KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ------cCcccccccc---ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 3345555443 45667655433333444456889999999886653211 122236788999887544
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.95 E-value=0.014 Score=68.54 Aligned_cols=147 Identities=11% Similarity=0.095 Sum_probs=96.8
Q ss_pred EcCCCCCEEEEE-eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEee----CCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 445 YNPSNPSLMAFG-TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLK----KYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 445 fsP~dg~~LaSG-s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp----~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.+-++.+.|... .....++-.|++.|+.+..+.. ....+|..++-.. ..+..-+.|-.+..+..||.|......
T Consensus 488 L~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~-~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 488 LHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKV-HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred hhccccceEeecCCCCCceEEEecCCCcEEEEeec-CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344455555554 3457899999999999998874 2234466665321 123445667788899999999742100
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
. ......+..+....+++-. .+.++|.||.+|.||+||--..+.-..++ +-..+|..|..+.+|.|+||||-.
T Consensus 567 --v--~~~~k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 567 --V--DSQSKQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred --e--eccccccccCCCceEEEec-CCceEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence 0 0011233344556777554 34689999999999999943333344455 667999999999999999998753
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.93 E-value=0.022 Score=61.21 Aligned_cols=134 Identities=12% Similarity=0.005 Sum_probs=87.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
++.+.+++.+|.++.||.++|+.+....... ...... .+..++.++.||.+..+|..+++. +-
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~~----------~W 303 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAV---DDNRLYVTDADGVVVALDRRSGSE----------LW 303 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceE---eCCEEEEECCCCeEEEEECCCCcE----------EE
Confidence 4578888899999999999998877554211 112222 236788888999999999987421 11
Q ss_pred Ee-ecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 530 TY-YDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 530 t~-~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.. .... ...+... .++.+++++.+|.+.++|..+++.+..++ .+...+..--.-.++ . +..++.||.+-|.
T Consensus 304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~-~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVGD-G-LLVQTRDGDLYAF 376 (377)
T ss_pred ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEECC-E-EEEEeCCceEEEe
Confidence 11 1011 1122112 36789999999999999999999998887 344443332222233 3 5578889988764
No 321
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.026 Score=62.52 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=94.7
Q ss_pred eeEEEEcCC-CCCEEEE-----EeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEE--CCC-----
Q 035500 440 PRQFEYNPS-NPSLMAF-----GTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGS--DSG----- 505 (606)
Q Consensus 440 V~slafsP~-dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS--~Dg----- 505 (606)
+..+++||. ....+|+ +|.=+.||||-......-..+... --...-..+.|++.+..+|+-++ -|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 677889984 4556665 566678999987632221111100 01112335678876555554443 232
Q ss_pred ----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 506 ----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 506 ----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
++++.+++. ..+...+...++|.++.|+|++.-|+..- .=.++.|+|++ ++++..+. .++
T Consensus 248 YGEq~Lyll~t~g----------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egp 313 (566)
T KOG2315|consen 248 YGEQTLYLLATQG----------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGP 313 (566)
T ss_pred cccceEEEEEecC----------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCC
Confidence 566666663 44566777789999999999998666553 34789999997 77888887 467
Q ss_pred eEEEEEeCCCCeEEEEEeCC
Q 035500 580 INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~D 599 (606)
=+++-|||.|.. ++-+|.+
T Consensus 314 RN~~~fnp~g~i-i~lAGFG 332 (566)
T KOG2315|consen 314 RNTAFFNPHGNI-ILLAGFG 332 (566)
T ss_pred ccceEECCCCCE-EEEeecC
Confidence 788999999986 4455544
No 322
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.90 E-value=0.02 Score=69.13 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=95.9
Q ss_pred EEEEcCCCCCEEEEEeC---C---CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeC
Q 035500 442 QFEYNPSNPSLMAFGTL---D---GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDL 512 (606)
Q Consensus 442 slafsP~dg~~LaSGs~---D---GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl 512 (606)
.++|-. ||.++|+.+. . +.+|||+-+ |....+.+ .-.+--.+++|-| .++++|+... ...|.+|.-
T Consensus 214 ~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 214 RISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred EEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 477988 9999999875 2 589999977 66554433 3333445789999 6788888764 345666664
Q ss_pred CCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCeEEEEEeC
Q 035500 513 NHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--PLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~I~sV~fsP 587 (606)
+.... .-..+. ....|..++|++++..+|..-.|. |.+|-..+-. .-+++.......+..+.|+|
T Consensus 289 NGLrh---------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 289 NGLRH---------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred CCcEe---------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 44211 112222 234599999999999999987655 9999876542 22333333345566699999
Q ss_pred CCCeEEEEEeCCCe
Q 035500 588 HSPLCLLLLHLTTM 601 (606)
Q Consensus 588 ~g~~LLaTgS~Dgt 601 (606)
..+.-+...+.++.
T Consensus 359 e~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQ 372 (928)
T ss_pred CCCCEEEEEecCCc
Confidence 88876666666443
No 323
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.83 E-value=0.00048 Score=77.02 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=75.6
Q ss_pred cceEEEccCccccchHHH-hhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 101 KLRVVDLSNITLRNDNLL-DLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.||.|++|||.+...-+- |+++- -.--+||||.|+++... ...+-.++-.|||+ .|+|.+|+-..|-.+--|-.|.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhc
Confidence 467788999888765544 33332 23457999999999876 55677889999999 8999999999999999999999
Q ss_pred cccccccchhhhhHHhhcCCch
Q 035500 179 MCETRIVNLWTTTAAISKLPYL 200 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l 200 (606)
+.+||+.-|--.+.-|+.|.+|
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhh
Confidence 9999988776666555554444
No 324
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.83 E-value=0.0034 Score=73.95 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=66.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|.+|.+.. +..- -....+.|+|++|++..+... -+..|++|+|+ +|+|+.++...+ ++|+.|.+
T Consensus 220 ~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls-~N~L~~LP~~l~---~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTS--IPAT--LPDTIQEMELSINRITELPER-LPSALQSLDLF-HNKISCLPENLP---EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCcccc--CChh--hhccccEEECcCCccCcCChh-HhCCCCEEECc-CCccCccccccC---CCCcEEEC
Confidence 489999999976642 2211 123578899999999877521 23579999999 899999987543 68999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-.. + .++|.+|.+..
T Consensus 291 s~N~Lt~LP~~---l--p~sL~~L~Ls~ 313 (754)
T PRK15370 291 YDNSIRTLPAH---L--PSGITHLNVQS 313 (754)
T ss_pred CCCccccCccc---c--hhhHHHHHhcC
Confidence 99988765211 1 13677777554
No 325
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.82 E-value=0.00034 Score=79.47 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=50.5
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=+.||||.|.+.|.-++-.+++||+|.|.|| .++-++- .--+| +|..|.+-||-+..| ..+-+|.+|.-|.
T Consensus 189 le~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc--~L~~L~lrnN~l~tL----~gie~LksL~~LD 260 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC--KLQLLNLRNNALTTL----RGIENLKSLYGLD 260 (1096)
T ss_pred hhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhh--hheeeeecccHHHhh----hhHHhhhhhhccc
Confidence 4668999999999998889999999999964 4444432 11222 277888877755444 8888888888775
No 326
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.72 E-value=0.092 Score=47.14 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred eeEEEEcCCCC---CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNP---SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg---~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|+++++...++ +.|++||.|..||||+-+ ..+..+. -.+.|.+++-.. +..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~---e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT---ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe---cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence 55666665333 689999999999999855 4444433 345788888764 37899999999999997643
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccC---C-CEEEEEeCCCcEE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNST---D-DQFLASGYSKNVA 559 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~---g-~~LaSgs~Dg~I~ 559 (606)
..++ .+.+..+.++++..- | .-+++|-.+|.|-
T Consensus 73 ---------RlWR-iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---------RLWR-IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---------eeee-eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1111 223444666655432 3 3788998888764
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.66 E-value=0.042 Score=61.03 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=78.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE-eCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF-DLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW-Dl~~~~~~ 518 (606)
++.+.++| ++++++. +.||.-.|+.....+.... +.....+|.+ .+.+|.-...++|+++ ++..
T Consensus 35 p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~---- 99 (443)
T PF04053_consen 35 PQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWSS--RNRYAVLESSSTIKIYKNFKN---- 99 (443)
T ss_dssp -SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE----
T ss_pred CeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEec--CccEEEEECCCeEEEEEcCcc----
Confidence 78899999 8888888 5688888888544443322 2356788986 3567887778999996 3332
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.....+.....+..| |- |.+++..+.+ .|.+||..+++.++.+.. .+|..|.|++++.+ +|-.+.
T Consensus 100 -------~~~k~i~~~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~-val~t~ 164 (443)
T PF04053_consen 100 -------EVVKSIKLPFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGEL-VALVTK 164 (443)
T ss_dssp --------TT-----SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-EEEE-S
T ss_pred -------ccceEEcCCcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCE-EEEEeC
Confidence 112233333345555 22 7777777664 899999999999999983 34899999999986 455555
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|.+.
T Consensus 165 ~~i~ 168 (443)
T PF04053_consen 165 DSIY 168 (443)
T ss_dssp -SEE
T ss_pred CeEE
Confidence 5543
No 328
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.55 E-value=0.0059 Score=63.44 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=97.8
Q ss_pred cccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhhcc--ceEEEccCccccc--hHHHh---hccCC
Q 035500 52 QLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQK--LRVVDLSNITLRN--DNLLD---LCQVG 124 (606)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~--~~~~~---~~~~~ 124 (606)
++.+.|...++.-+.. ++.+++ +.|.+.++.+..+-..+... |+.++++++.++. +.++. .....
T Consensus 9 ~l~~~~~~~~~~~l~~-----L~~l~l---~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 9 LLKTERATELLPKLLC-----LQVLRL---EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccchHHHHHHHhh-----ccEEee---cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4455566555555544 555555 45677777777766665544 9999999998883 43332 23335
Q ss_pred CceeEEEccccchhc--ccccccccc---ccEEecccCCCccccc----ccccccC-ccccEEEcccccccc--hhhhhH
Q 035500 125 SSCHVLILRATNIRK--LNMVGRFMH---LNTLSLDFCSSLASLH----EDCFSCM-PYLMCLSMCETRIVN--LWTTTA 192 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~--l~~~~~~~~---l~tl~l~~~~~~~~~~----~~~~~~~-p~l~~l~~~~~~~~~--l~~~~~ 192 (606)
..=+.|+|+++.+.. -..++.+.+ |+.|+|. +++++.-. ...+..+ |+|+.|.|.+|++.. +=.-..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 577889999999863 223445555 9999999 77777211 1235566 999999999998872 111234
Q ss_pred HhhcCCchhhhhhcee
Q 035500 193 AISKLPYLMELRFQMC 208 (606)
Q Consensus 193 ~l~~~~~l~~l~~~~~ 208 (606)
.+..+++|++|++..|
T Consensus 160 ~~~~~~~L~~L~l~~n 175 (319)
T cd00116 160 ALRANRDLKELNLANN 175 (319)
T ss_pred HHHhCCCcCEEECcCC
Confidence 5667788999987664
No 329
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.52 E-value=0.0056 Score=75.77 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=72.4
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
-.+||.+++.++.+. ..-.+.....+ +.|+|+.|++.+|. .+..+++|.+|+|..++.++.++. ++.+|+|+.|
T Consensus 588 p~~Lr~L~~~~~~l~-~lP~~f~~~~L--~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLR-CMPSNFRPENL--VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCC-CCCCcCCccCC--cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence 357999999885431 11112222233 56999999988884 466789999999998888888875 7788999999
Q ss_pred Eccccc-ccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCETR-IVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.|.++. +..+- ..+..|++|+.|.|.+|.
T Consensus 663 ~L~~c~~L~~lp---~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 663 KLSDCSSLVELP---SSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EecCCCCccccc---hhhhccCCCCEEeCCCCC
Confidence 997753 33332 346678888888888764
No 330
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.43 E-value=0.0092 Score=39.36 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=27.9
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
.|...|.+++|.+ .+..+++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 7888999999998 458999999999999996
No 331
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.43 Score=50.65 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=102.2
Q ss_pred eeEEEEcCCCCCEEEEEeCC---CcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---GEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---GtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~ 513 (606)
++-++|+| +.+.|.++..+ |.|--|.+.. |+....-....-..+-..++.++ +++.++++. .-|.|.++-++
T Consensus 42 ptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 42 PTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEEcc
Confidence 67789999 88888887655 6777766653 55433211111122337888887 567777776 45789999887
Q ss_pred CCCCCcccccCCcceEEeecCCC----------eEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeE----EEcCCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFEQ----------LTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQ----LFTDMHRE 578 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~----------V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~----~l~~gH~~ 578 (606)
..... ..++....|..+ +....+.|+++++++..- --.|.+|++..|+... .++ -..
T Consensus 120 ~dG~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~--~G~ 191 (346)
T COG2706 120 ADGSL------QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK--PGA 191 (346)
T ss_pred cCCcc------ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC--CCC
Confidence 63221 123333433322 888999999998888753 2478999999775522 222 245
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.-+.|.|+|++++..+.+--+++|-+
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEE
Confidence 56789999999988888777777754
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.062 Score=62.34 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=90.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe-----EEEEeCCCCCCC
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-----VRLFDLNHIPPK 518 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-----IklWDl~~~~~~ 518 (606)
+|++ .+..+|.|+.+|.|.+.+-. -+....++ .+...+...-|.-.....|+|.+.|+. +++||+......
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fq--a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQ--AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehhe--ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4777 77899999999998888744 23334444 444443333344334468888887765 899999875432
Q ss_pred cccccCCcce---EEeec-----CCCeEEEEEccCCCEEEEEeCCCcEEEE--ECCCCceeE-EEcCCCCCCeEEEEEeC
Q 035500 519 VADARGNSSV---ATYYD-----FEQLTSVHVNSTDDQFLASGYSKNVALY--DINTEKPLQ-LFTDMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i---~t~~~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~IW--Dlrt~k~v~-~l~~gH~~~I~sV~fsP 587 (606)
.. ..++ +.+.+ ..++.++++|.+-..+|.|-.+|.|..+ |+-..+-.+ .....-.++|+.+++..
T Consensus 106 ~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 106 NS----PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CC----cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 21 1223 22222 3558899999888999999999999988 333222211 11112357999999988
Q ss_pred CCCe
Q 035500 588 HSPL 591 (606)
Q Consensus 588 ~g~~ 591 (606)
++..
T Consensus 182 d~~s 185 (933)
T KOG2114|consen 182 DGKS 185 (933)
T ss_pred CCce
Confidence 8776
No 333
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.31 E-value=0.022 Score=66.17 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=96.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..++.|+....+-.+|..+.+....... ..+.|.-++. +++.+.+|...|+|-+-|.++ .+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s----------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS----------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec--cCCceEEEEe---cCcEEEeecccceEEeecCCc----------Ccee
Confidence 456788888888888999998877665442 1223555554 457899999999999999998 5678
Q ss_pred EEeecC-CCeEEEEEccCCCEEEEEeCC---------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 529 ATYYDF-EQLTSVHVNSTDDQFLASGYS---------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 529 ~t~~~~-~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.++..| +.|.++.. +|++++|+|.. ..|++||+|+-+.+.-++ -|.++ .-+.|+|.-...++.+|.
T Consensus 211 ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEec
Confidence 888865 45777755 59999999874 568999999887765554 23333 456777776666666665
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
.|..
T Consensus 287 sGq~ 290 (1118)
T KOG1275|consen 287 SGQF 290 (1118)
T ss_pred ccce
Confidence 5543
No 334
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.30 E-value=0.1 Score=57.50 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=87.6
Q ss_pred eeEEEEcCC-CCCEEEE-----EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------C
Q 035500 440 PRQFEYNPS-NPSLMAF-----GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------D 503 (606)
Q Consensus 440 V~slafsP~-dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~ 503 (606)
++.++|+|. ++..+|. ++.+++++||.+..+..+.+..+.. -.-..+.|++.+..+++-.- .
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEecCCceEEEEEEEeeecccceec
Confidence 677889994 4555554 6788999999998777766544322 12346778874433222110 1
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPIN 581 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~ 581 (606)
..++.+++++.. .-++ .....++|.+.+|+|.++.|++.+ .+..+.++|++.. ....++ ...=+
T Consensus 254 esnLyl~~~~e~---------~i~V-~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rN 319 (561)
T COG5354 254 ESNLYLLRITER---------SIPV-EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRN 319 (561)
T ss_pred cceEEEEeeccc---------ccce-eccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---Ccccc
Confidence 235667776642 1122 224478899999999998777665 5688999999865 555554 23344
Q ss_pred EEEEeCCCCeEEE
Q 035500 582 VAKFSHHSPLCLL 594 (606)
Q Consensus 582 sV~fsP~g~~LLa 594 (606)
.+-|+|.+.+++.
T Consensus 320 T~~fsp~~r~il~ 332 (561)
T COG5354 320 TIFFSPHERYILF 332 (561)
T ss_pred cccccCcccEEEE
Confidence 5667777776543
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.017 Score=64.79 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=73.4
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeE-EEEEccCCCEEEEEeCCCcEEE
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLT-SVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~-sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
..+.-+.|+| .-.++|.+..+|.|-+..++. ..+-++. +...++ +++|.|+|+.+|.|-.||+|++
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 3477788999 557899999999888877774 2344454 334455 9999999999999999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCC
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
.|+.++..+..+...-...|.++-|.|.
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred EEccCCCceeccccccccchheeecccc
Confidence 9999998887754335678888888743
No 336
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.22 E-value=0.0043 Score=46.30 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=33.0
Q ss_pred eEEEccccchhcccc-ccccccccEEecccCCCcccccc
Q 035500 128 HVLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHE 165 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~ 165 (606)
++|+|++|.|.++.. ++.+++|.+|+|+ +|+|++++.
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~-~N~i~~i~~ 41 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLS-NNPISDISP 41 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEET-SSCCSBEGG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEec-CCCCCCCcC
Confidence 579999999999998 9999999999999 889998753
No 337
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.21 E-value=0.0095 Score=70.23 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHh-hccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCCccccccccc
Q 035500 91 IMSLMHAI-DQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 91 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|++-|+.- .-+-.++||.++.+.. +-+ +. -.-+.|+|+.|++.+|... .++|.+|+|. +|.|++++.
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~Lts--LP~~l~---~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~--- 259 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTT--LPDCLP---AHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPV--- 259 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCc--CCcchh---cCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccC---
Confidence 45555433 3445667777754431 211 21 1345566666666666543 3566666666 556666643
Q ss_pred ccCccccEEEccccccc
Q 035500 169 SCMPYLMCLSMCETRIV 185 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~ 185 (606)
..|+|..|++.+|.+.
T Consensus 260 -lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 260 -LPPGLLELSIFSNPLT 275 (788)
T ss_pred -cccccceeeccCCchh
Confidence 1344444444444443
No 338
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.20 E-value=0.011 Score=61.25 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=99.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
+.++.++. +...+.++ .|-+|.+|+++-- .....+...+|. .-|++..|+|.....+.-.+..|+|++-|++
T Consensus 175 iNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 77888987 77677665 5788999998642 222233333553 4578889999777777777889999999999
Q ss_pred CCCCCccccc----CCcce--EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCC--------
Q 035500 514 HIPPKVADAR----GNSSV--ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHR-------- 577 (606)
Q Consensus 514 ~~~~~~~~l~----~~~~i--~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~-------- 577 (606)
....-..... ...++ .-+.. -..|..+.|++.|+++++-+. .+|+|||.+.. .++.+.+ .|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~-~h~~l~~~l~d 330 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP-MHCDLMDELND 330 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec-hHHHHHHHHHh
Confidence 5311000000 00000 01111 245889999999999998877 79999999975 5577765 342
Q ss_pred ----CCe---EEEEEeCCCCeEEEEEeCC
Q 035500 578 ----EPI---NVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 578 ----~~I---~sV~fsP~g~~LLaTgS~D 599 (606)
..| ..+.|+.+..+ +.+||..
T Consensus 331 ~YEnDaifdkFeisfSgd~~~-v~sgsy~ 358 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKH-VLSGSYS 358 (460)
T ss_pred hhhccceeeeEEEEecCCccc-ccccccc
Confidence 233 24667777665 4455543
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.18 E-value=0.013 Score=38.54 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=30.1
Q ss_pred ceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 035500 527 SVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYD 562 (606)
Q Consensus 527 ~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWD 562 (606)
+...+. +...|.+++|++.+..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445555 345699999999999999999999999996
No 340
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.015 Score=62.97 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCCcccccCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
-.+++.+|+.||.++.|--..-.-+ -...+..|-+.+.+++.+- ++.++.|++. |..+|++|+...... .
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-------n 90 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMI-------N 90 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchh-------h
Confidence 5679999999999999985431111 1223457788888888875 6678888887 999999999874321 1
Q ss_pred ceEEeecCCCeEEEEEccCC--CEEEEEe-CCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 527 SVATYYDFEQLTSVHVNSTD--DQFLASG-YSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 527 ~i~t~~~~~~V~sV~~sp~g--~~LaSgs-~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+....-...+..+ .+|.. ..++.+. .++.+.++|-+..- +..-+...|..+|..+.++|.+.. +++....|+|
T Consensus 91 miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmV 168 (558)
T KOG0882|consen 91 MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMV 168 (558)
T ss_pred hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeecccccee
Confidence 11111112222222 12221 1444443 56999999998654 455566579999999999999884 6677777887
Q ss_pred EE
Q 035500 603 RC 604 (606)
Q Consensus 603 Rc 604 (606)
.+
T Consensus 169 Ey 170 (558)
T KOG0882|consen 169 EY 170 (558)
T ss_pred Ee
Confidence 64
No 341
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.014 Score=66.76 Aligned_cols=122 Identities=25% Similarity=0.261 Sum_probs=92.1
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC----------CCeEEEEeCCCCCCCccc
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD----------SGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~----------DgtIklWDl~~~~~~~~~ 521 (606)
++|.|+..|+|.|+|+.++.....+. -|++.|.++.|.. + ..|+|.+. -+.+.+-|++++.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fs--vht~~VkgleW~g-~-sslvSfsys~~n~~sg~vrN~l~vtdLrtGl----- 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFS--VHTSLVKGLEWLG-N-SSLVSFSYSHVNSASGGVRNDLVVTDLRTGL----- 509 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhc--ccccceeeeeecc-c-eeEEEeeeccccccccceeeeEEEEEccccc-----
Confidence 78899999999999999988877555 8999999999974 2 34555432 3356677888753
Q ss_pred ccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 522 ARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 522 l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
..+.+..+ ...+|..+..+..+.+++..-.+.-+-+||+++..+++.+.. .-.-|+.+.|+
T Consensus 510 ---sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~-a~P~it~leWs 572 (1062)
T KOG1912|consen 510 ---SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL-ALPLITVLEWS 572 (1062)
T ss_pred ---ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh-cCCcEEEEeec
Confidence 22333333 346799999999999999999999999999998877766552 22338888888
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.029 Score=63.03 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=68.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEE-EEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVL-GLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~-~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.-+.|+| .-.++|.+..+|.|-+.-.. ...+.+++ -|...++ +++|.| ++..++.|=.||+|++-|+.++.
T Consensus 23 i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip--~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~-- 95 (665)
T KOG4640|consen 23 IKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIP--IPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG-- 95 (665)
T ss_pred eEEEEEcC-ccchhheeccCCcEEEEEec-cceeEecc--CCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC--
Confidence 56688999 88899999999999998887 56666665 3445566 999999 58999999999999999999853
Q ss_pred cccccCCcceEE--eecCCCeEEEEEc
Q 035500 519 VADARGNSSVAT--YYDFEQLTSVHVN 543 (606)
Q Consensus 519 ~~~l~~~~~i~t--~~~~~~V~sV~~s 543 (606)
.+.. +....+|.++.|.
T Consensus 96 --------~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 --------RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred --------ceeccccccccchheeecc
Confidence 2333 3334557777775
No 343
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.041 Score=62.48 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=88.5
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc--ccccC---CcceEEeecC-CCeEEEEEccCCCEEEEEe
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV--ADARG---NSSVATYYDF-EQLTSVHVNSTDDQFLASG 553 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~--~~l~~---~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs 553 (606)
+......++.|+. ..++++.||.||.+++-.+.+..... +++.. -..-+++.+| ..|.-+.|+...+.+-|+.
T Consensus 12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3445688999997 67899999999999999887643211 11110 1112355655 5599999999889999999
Q ss_pred CCCcEEEEECCCCceeEEE-cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 554 YSKNVALYDINTEKPLQLF-TDMHREPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l-~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
.+|-|.+|=+-.|.=..++ ....++.|.+++|+.+|.. ++..-.||-|..|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVG 142 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVG 142 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEE
Confidence 9999999988877432222 1224678999999999986 5666677766554
No 344
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=95.95 E-value=0.0046 Score=40.84 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=19.5
Q ss_pred hhhHHHHHhhCCCceeccCCCC
Q 035500 321 KHYREYMIASLPQLEVLDNLPI 342 (606)
Q Consensus 321 ~~YReyvI~~Lp~LkvLD~~~i 342 (606)
++||+|||..||+|++||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 6899999999999999997643
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.88 E-value=0.45 Score=42.80 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=71.7
Q ss_pred EEEEEEee---CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 035500 485 VLGLCWLK---KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY 561 (606)
Q Consensus 485 V~~L~fsp---~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW 561 (606)
|+++++.. ++...|+.||.|..|++|+-.. .+..+.....|++++-... ..|+.+-.+|+|.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence 56666643 2346799999999999998665 4566667777888866544 789999999999999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEe---CCCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFS---HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fs---P~g~~LLaTgS~DgtIRc 604 (606)
+- .+.+...+ .+..++++++. -+|..-+++|=.+|.|-.
T Consensus 69 ~~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 69 DR--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eC--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 75 33344444 34456666654 344445778888887643
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.80 E-value=0.0031 Score=70.61 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=98.7
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----CCCeEEEEeCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----DSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----~DgtIklWDl~~ 514 (606)
++|+++.- .+.-+++.|..+|.|-+-.......-......+|....++++|++.+.+.||+|- .|..++|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 55666655 2335899999999999988654222211112378889999999998777777773 467899999988
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.-. .+. ..+...-.......+++|-.+.+++.+|...+.+.++|+|.... ...+. +..+..+...|-.+..+
T Consensus 139 ~lt--vPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 139 LLT--VPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYF 211 (783)
T ss_pred ccC--CCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCce
Confidence 411 000 01111111223466899987788999999999999999994422 22222 34455566777444335
Q ss_pred EEEeCCCeEE
Q 035500 594 LLLHLTTMSR 603 (606)
Q Consensus 594 aTgS~DgtIR 603 (606)
++-+ |+.|.
T Consensus 212 cs~~-dg~iA 220 (783)
T KOG1008|consen 212 CSNS-DGDIA 220 (783)
T ss_pred eccc-cCcee
Confidence 4444 66554
No 347
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.79 E-value=0.71 Score=45.61 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..+++++.++.+..||..+|+.+..+...+..... ... .+..++.++.|+.+..+|..+++. ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~--~~~~v~v~~~~~~l~~~d~~tG~~---------~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVV--DGGRVYVGTSDGSLYALDAKTGKV---------LW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEE--ETTEEEEEETTSEEEEEETTTSCE---------EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eee--cccccccccceeeeEecccCCcce---------ee
Confidence 4567888899999999999999998877753221112 111 335777788889999999887532 22
Q ss_pred EEeecC----CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 529 ATYYDF----EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 529 ~t~~~~----~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
...... ...........++.++.+..++.|..+|+++|+.+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 211211 1112222222388889999899999999999999888873
No 348
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.76 E-value=0.011 Score=69.86 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=7.9
Q ss_pred cccEEEcccccccch
Q 035500 173 YLMCLSMCETRIVNL 187 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l 187 (606)
+|+.|.|.+|++..+
T Consensus 343 ~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 343 GLQELSVSDNQLASL 357 (788)
T ss_pred ccceEecCCCccCCC
Confidence 455555555555443
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.024 Score=65.40 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=64.7
Q ss_pred ccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 432 KEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 432 ~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
.+-.+.+++.+++||| ..-.+|.|-.-|.+.||...+.+.-... ..|+.+|..+.|++ +++.+.|+..=|.+.+|.
T Consensus 54 r~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~--~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 54 RDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVV--ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred cccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeec--cCCCCCceeEEecC-CCCeEEEcCCCceeEEEE
Confidence 3334456789999999 7789999999999999998876554433 38999999999998 678899999999999998
Q ss_pred CC
Q 035500 512 LN 513 (606)
Q Consensus 512 l~ 513 (606)
..
T Consensus 130 ~d 131 (1416)
T KOG3617|consen 130 YD 131 (1416)
T ss_pred ee
Confidence 76
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.73 E-value=0.056 Score=61.51 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=82.9
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
+++. .+.+++.|++-|.+++|+-..+.... .+..+..+.+...+.++ .+.++|.|+..|.|.++-++...+..
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~---- 112 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD---- 112 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc----
Confidence 3444 67899999999999999987766654 23334455566666676 66788999999999999888732210
Q ss_pred CCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 524 GNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 524 ~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
...+.... |+..|++++|++++..+++|..-|+|..--+.+
T Consensus 113 -~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 -LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 00111111 456799999999999999999999999887766
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.055 Score=61.55 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=81.8
Q ss_pred CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 482 ~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
...|.--+++. .+.+++-|+.-|.+.++.-..+.. ...... .+..+.....|+...++|.|+..|.|.+
T Consensus 33 ~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~---------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 33 PARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEM---------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred cceEEEEEeec-CCceEEEecccceEEEEecCchhh---------hcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 33455555554 668999999999999998776432 112222 2444667778998999999999999999
Q ss_pred EECCCCce-----eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKP-----LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~-----v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+-+..+.+ +......|+..|++++|++++.. +.+|...|+|.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVL 150 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccE-EeecCCCceEEE
Confidence 98887544 22222347889999999999986 678888888865
No 352
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.65 E-value=0.35 Score=58.62 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=84.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC----C
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL----N 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl----~ 513 (606)
+|..++|++ ++.+||..-.|. |.+|-..+...-...... .....+..+.|+|.++..|..++.+|.+..+++ .
T Consensus 306 ~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 306 KVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred eeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 478999999 999999988666 999998764432222221 223345569999988888888888777765443 2
Q ss_pred CCCCC-----------------ccccc---CCcce--EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 514 HIPPK-----------------VADAR---GNSSV--ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 514 ~~~~~-----------------~~~l~---~~~~i--~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
..... .+++. -.+|. ..+....+|.+++|++++..+++-..||.+.+|....
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 21100 01110 02233 3455678899999999998899999999999998543
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.58 E-value=0.82 Score=47.00 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++.++|+|.++.++|+....+.|...+. +|+.+..+++.+ .+-.-+|++.. ++.++++--.++.+.+.++.......
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccccc
Confidence 7789999966668888888899988886 488888888766 34678888874 44444444458999999986532211
Q ss_pred ccccCCcceEEee------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeE--EE-----cCCCCCCeEEE
Q 035500 520 ADARGNSSVATYY------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---EKPLQ--LF-----TDMHREPINVA 583 (606)
Q Consensus 520 ~~l~~~~~i~t~~------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---~k~v~--~l-----~~gH~~~I~sV 583 (606)
. ......+. +...+-.++|.|.++.++.+-...-..+|.++. +..+. .. ...+...+.++
T Consensus 101 ~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 101 D----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred c----hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 11112222 234489999999988777776665566666653 21111 11 11245668899
Q ss_pred EEeCCCCeEEEEEeCCCeEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIR 603 (606)
+++|...++++-++....+-
T Consensus 177 ~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp EEETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCeEEEEECCCCeEE
Confidence 99999888888887776653
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.019 Score=66.05 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=77.7
Q ss_pred EEEEcCCCCCEEEEEe----CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 442 QFEYNPSNPSLMAFGT----LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 442 slafsP~dg~~LaSGs----~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
-..|||..+ ++|.++ ..|.|.||- ++|++...+...-| +.++||+|. .-.|++|=.-|.+.+|.-.+.+
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e- 92 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTE- 92 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChH-HHHHhhccccceeEEEecCCce-
Confidence 356999555 777766 458888885 44655443322223 567999994 4567788888999999887732
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
.......|..+|..+.|+|+|+.++|+..=|.|.+|-..
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 122234467779999999999999999999999999665
No 355
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.48 E-value=0.02 Score=66.98 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=51.8
Q ss_pred cccchhccccccccccccEEecccCCCccccc-ccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 133 RATNIRKLNMVGRFMHLNTLSLDFCSSLASLH-EDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 133 ~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~-~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+..-++|.+.. ||.|.+|.+. +..+..-+ ..-+..+|||..|.+.+|+|.|| ..+|.|++|..|-+++
T Consensus 136 s~~W~~kig~~--LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 136 SNGWPKKIGTM--LPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccHHHHHhhh--CcccceEEec-CceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccC
Confidence 45567777755 7888888776 44433221 13366899999999999999999 9999999999998665
No 356
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.47 E-value=0.02 Score=67.59 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHH-HHhhccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCCccccccccc
Q 035500 91 IMSLM-HAIDQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 91 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
|+..| -....+..+++|.++ +-.-+-. + ...-..|+|++|.|..|.. ..+.+|.+|.|. +|.+++|+...
T Consensus 168 a~~r~~~Cl~~~~~~L~L~~~--~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls-~N~LtsLP~~l- 239 (754)
T PRK15370 168 AVQRMRDCLKNNKTELRLKIL--GLTTIPACI---PEQITTLILDNNELKSLPE-NLQGNIKTLYAN-SNQLTSIPATL- 239 (754)
T ss_pred HHHHHHhhcccCceEEEeCCC--CcCcCCccc---ccCCcEEEecCCCCCcCCh-hhccCCCEEECC-CCccccCChhh-
Confidence 33334 345556677777773 2222221 2 2245668888887777653 134577777777 66777776532
Q ss_pred ccCccccEEEcccccccch
Q 035500 169 SCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l 187 (606)
.++|+.|.|.+|++..+
T Consensus 240 --~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 240 --PDTIQEMELSINRITEL 256 (754)
T ss_pred --hccccEEECcCCccCcC
Confidence 34677777777776655
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.43 E-value=0.16 Score=61.07 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=73.2
Q ss_pred EEEEcCCCCCEEEE-----EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE---ECCCeEEEEeCC
Q 035500 442 QFEYNPSNPSLMAF-----GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG---SDSGCVRLFDLN 513 (606)
Q Consensus 442 slafsP~dg~~LaS-----Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg---S~DgtIklWDl~ 513 (606)
++.|-- ||.++|+ ...-+.|+|||-+ |....+-. ...+.=.+++|-| .+.++++- +.|+.|.++.-+
T Consensus 200 ~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se--~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 200 SISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE--PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccC--cccccccceeecC-CCCeEeeeeecCCCCcEEEEecC
Confidence 466877 8889988 3334899999987 55443222 3334456899999 66777775 356678888766
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEE---EeCCCcEEEEECCC
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLA---SGYSKNVALYDINT 565 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaS---gs~Dg~I~IWDlrt 565 (606)
.-.. ..-...+.- ...|..++|+.++..+|. ......|++|-+.+
T Consensus 275 GL~h-------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 275 GLRH-------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred Cccc-------cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 5321 111111222 233899999999998887 44445599997765
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.11 Score=57.69 Aligned_cols=137 Identities=10% Similarity=0.118 Sum_probs=89.6
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC------CCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 449 NPSLMA-FGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY------PSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 449 dg~~La-SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~------~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+.++|. +|..-..++=-|++.|+.+...++ |+. |.-+.+.|+. +..-+.|-.|..|.=||.+-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---- 416 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---- 416 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----
Confidence 444444 455556688889999999987774 333 5555555532 11223466788899999986321
Q ss_pred ccCCcceE-----EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 522 ARGNSSVA-----TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 522 l~~~~~i~-----t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.-+. .+..+....|.+-. .+.+++.||.+|.|++||--..+.-..++ +-..+|..|..+.+|.|+++||
T Consensus 417 ----~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 417 ----NKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALP-GLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ----ceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhccc-ccCCceeeEEeeccCcEEEEec
Confidence 1121 12223334444332 34689999999999999974334444556 6788999999999999999887
Q ss_pred eC
Q 035500 597 HL 598 (606)
Q Consensus 597 S~ 598 (606)
-.
T Consensus 491 ~t 492 (644)
T KOG2395|consen 491 KT 492 (644)
T ss_pred cc
Confidence 54
No 359
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.12 Score=56.21 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=103.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC--C-EE-EEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP--S-KL-VAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~--~-~L-aSgS~DgtIklWDl~~ 514 (606)
+.+++.+- ++-+++|++. |+.++++|+++-..+..+++..-.+. +.|....+ . .+ ++.-.+|.+.++|-..
T Consensus 56 I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~ 131 (558)
T KOG0882|consen 56 ILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFG 131 (558)
T ss_pred HHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcC
Confidence 45566666 8889999777 99999999988666544443332222 33432122 1 23 3344788999999877
Q ss_pred CCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------Cce---------eEEEcCCCC
Q 035500 515 IPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT------EKP---------LQLFTDMHR 577 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt------~k~---------v~~l~~gH~ 577 (606)
.. .+...+. |..+|..+.++|.+..++|....|.|.-|.... .+. +..+.. .+
T Consensus 132 d~---------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~K 201 (558)
T KOG0882|consen 132 DF---------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AK 201 (558)
T ss_pred Cc---------CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc-cc
Confidence 42 2232333 567899999999999999999999999998773 111 122221 34
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEEc
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRCG 605 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc~ 605 (606)
....++.|+|++.. +++-+.|.+||.+
T Consensus 202 t~pts~Efsp~g~q-istl~~DrkVR~F 228 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQ-ISTLNPDRKVRGF 228 (558)
T ss_pred cCccceEEccccCc-ccccCcccEEEEE
Confidence 66789999999986 7888899999864
No 360
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.2 Score=55.73 Aligned_cols=111 Identities=12% Similarity=0.109 Sum_probs=72.6
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE---e
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS---G 553 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg---s 553 (606)
.-+..|...+|-|. ++.++.-+. -.++.+|.+.+.... ...+..+. +...+.|.|+|.|.+++.+ |
T Consensus 443 elke~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY~~e~~~~~------~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 443 ELKESVIAFAWEPH-GDKFAVISGNTVKNTVSFYAVETNIKK------PSLVKELD-KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ecchheeeeeeccC-CCeEEEEEccccccceeEEEeecCCCc------hhhhhhhc-ccccceEEEcCCCcEEEEEEecc
Confidence 44678999999994 566555432 347888888852210 12233333 3558899999999987766 4
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 554 YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 554 ~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
..|.+.++|+.......+-...| ...+.+.|.|.|+| ++|+|.-.
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRY-vvT~ss~w 559 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRY-VVTSSSSW 559 (698)
T ss_pred cccceEEEecchhhhhhccCccc-cccccceECCCCCE-EEEeeehh
Confidence 56899999998644332222124 45678999999998 55665443
No 361
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.30 E-value=0.005 Score=57.45 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=67.3
Q ss_pred chHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhh
Q 035500 114 NDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTT 191 (606)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~ 191 (606)
-|.++.|+ +|-.=..++|++|.|+|+. ..-+|+-+.||||. +|.|..+++. |..||-|+.|.+..|.+.-+-.-+
T Consensus 43 ~davy~l~-~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 43 ADAVYMLS-KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HHHHHHHh-CCceEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccCccccchHHH
Confidence 34555555 3444455889999999665 44578889999999 9999999999 999999999999999998887777
Q ss_pred HHhhcCCchh
Q 035500 192 AAISKLPYLM 201 (606)
Q Consensus 192 ~~l~~~~~l~ 201 (606)
+.|-||-+|.
T Consensus 120 ~~L~~l~~Ld 129 (177)
T KOG4579|consen 120 APLIKLDMLD 129 (177)
T ss_pred HHHHhHHHhc
Confidence 7766666554
No 362
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.13 E-value=0.28 Score=54.12 Aligned_cols=145 Identities=9% Similarity=0.064 Sum_probs=93.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---------------cEEEEECCCCceEEEEeccCCCCCEE-EEEEeeCCCCEEEEEEC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---------------EVIVINHENGNVACYIPSIGGTNSVL-GLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---------------tVrIWDi~tg~~v~~~~~~gH~~~V~-~L~fsp~~~~~LaSgS~ 503 (606)
|+-+.|+| .+.+|.+-+.-+ .+.|||+.+|..+..+.........+ -+.|+. ++.++|-- .
T Consensus 74 V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v 150 (561)
T COG5354 74 VKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-V 150 (561)
T ss_pred ceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-c
Confidence 67788999 999999866544 39999999999998877444443356 678886 44554433 3
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC--EEE-----EEeCCCcEEEEECCCCceeEEEcCCC
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD--QFL-----ASGYSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~--~La-----Sgs~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
...++++++.. ... ..+...++ ...|..-.|+|.++ .|+ .++..+++++|.+..+..+.+... .
T Consensus 151 ~~sl~i~e~t~-n~~------~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f 221 (561)
T COG5354 151 GSSLYIHEITD-NIE------EHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F 221 (561)
T ss_pred cCeEEEEecCC-ccc------cCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E
Confidence 34689999732 111 11222222 23477778888753 333 246678999999997766544331 2
Q ss_pred CCCeEEEEEeCCCCeEEEEE
Q 035500 577 REPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTg 596 (606)
.-.=-.+.|++.|.++++-.
T Consensus 222 k~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred eecccEEEEecCCceEEEEE
Confidence 22334688999999877643
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.97 E-value=1.6 Score=46.06 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCEEEEEeC----------CCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 450 PSLMAFGTL----------DGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 450 g~~LaSGs~----------DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
..+++.|+. .|.|.++++... .....+......++|++++-. + +.++.|. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~-~~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--N-GRLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--T-TEEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--C-CEEEEee-cCEEEEEEccCc
Confidence 468888764 299999999874 233333333557889999876 3 3444443 589999999984
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE--ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY--DINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW--Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.. -.+...+.....+.++... +++++.|..-+.+.++ +....+....-.......++++.|-+++. .+
T Consensus 118 ~~-------l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~ 187 (321)
T PF03178_consen 118 KT-------LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TI 187 (321)
T ss_dssp SS-------EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EE
T ss_pred cc-------chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EE
Confidence 30 1223334344557777655 7799999888888876 44222232222222456688999987775 67
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
+.+..+|.+.+
T Consensus 188 i~~D~~gnl~~ 198 (321)
T PF03178_consen 188 IVGDKDGNLFV 198 (321)
T ss_dssp EEEETTSEEEE
T ss_pred EEEcCCCeEEE
Confidence 88888887754
No 364
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.94 E-value=0.71 Score=45.61 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=66.0
Q ss_pred CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 458 LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 458 ~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
.+|+|..||..+|+.+.......-.......... .+..+++++.++.+..||..+++ .+-.+.....+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~----------~~W~~~~~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGK----------VLWRFDLPGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSE----------EEEEEECSSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCC----------EEEEeeccccc
Confidence 3789999999999999877652212222222222 34678888999999999998742 22222222221
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 035500 538 TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l 572 (606)
...- ...+..++.++.++.+..+|..+|+.+...
T Consensus 69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred ccee-eecccccccccceeeeEecccCCcceeeee
Confidence 1111 223566677778889999999999998874
No 365
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.87 E-value=0.024 Score=61.39 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=41.5
Q ss_pred eEEEccccchhccccccccc--cccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhh-cCCchhhhh
Q 035500 128 HVLILRATNIRKLNMVGRFM--HLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAIS-KLPYLMELR 204 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~--~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~-~~~~l~~l~ 204 (606)
..|++.+|.|-++.-...+. +|..|.+. .|.|..++ ..-..+|+|..|.+.+|+++.+ .++. +++.|.+|.
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l----~~~~~~~~~L~~L~ 192 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLP-SPLRNLPNLKNLDLSFNDLSDL----PKLLSNLSNLNNLD 192 (394)
T ss_pred eEEecCCcccccCccccccchhhccccccc-ccchhhhh-hhhhccccccccccCCchhhhh----hhhhhhhhhhhhee
Confidence 44666666666666544443 56666666 66666653 2245566666666666665555 4444 556666554
No 366
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.87 E-value=1.2 Score=47.71 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
.++.+++++.+|.|.-+|..+|+.+......+.- ...... .+..++.++.||.+..||..+++. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~----------~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVGA---DGGLVFVGTEKGEVIALDAEDGKE----------L 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceEE---cCCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 4568889999999999999999998766543311 112222 246788889999999999877431 1
Q ss_pred EEeecCCCeEE-EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 529 ATYYDFEQLTS-VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 529 ~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
-.......+.+ ... .+..++.++.++.+..||.++|+.+..++
T Consensus 129 W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred eeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 11111222211 111 25677778889999999999999877665
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.11 Score=61.60 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=68.2
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM 575 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g 575 (606)
..++.|+.-|.+-..|.+.+- ......-....+|++++|+.+|.+++.|-.+|.|.+||+.++++.+.+. .
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e 170 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-E 170 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-e
Confidence 468888888989888888731 1111122245779999999999999999999999999999999988877 3
Q ss_pred CCCCeEE---EEEeCCCCeEEEEEeCCC
Q 035500 576 HREPINV---AKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 576 H~~~I~s---V~fsP~g~~LLaTgS~Dg 600 (606)
|..+.+. +.+..++. .+.++...|
T Consensus 171 ~~ap~t~vi~v~~t~~nS-~llt~D~~G 197 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNS-KLLTSDTGG 197 (1206)
T ss_pred cCCccceEEEEEEeCCCc-EEEEccCCC
Confidence 5444433 33444444 466766666
No 368
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.70 E-value=0.013 Score=60.97 Aligned_cols=101 Identities=23% Similarity=0.235 Sum_probs=79.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccc-cccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMV-GRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
-|+|+++|+-| |.--+.+| |.=.+-+.||||.|-+.++... -++-++.||+|. -|-|.++.- ..-+=.|..|.
T Consensus 307 Pkir~L~lS~N--~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La-~N~iE~LSG--L~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQN--RIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA-QNKIETLSG--LRKLYSLVNLD 380 (490)
T ss_pred cceeEEecccc--ceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeehh-hhhHhhhhh--hHhhhhheecc
Confidence 58999999984 44444553 2334568899999999998744 489999999999 999988853 44566788999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.+|+|.|| ..+..+-+||.|.-|++-+
T Consensus 381 l~~N~Ie~l-deV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 381 LSSNQIEEL-DEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ccccchhhH-HHhcccccccHHHHHhhcC
Confidence 999999999 6667778899998887544
No 369
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.68 E-value=0.0091 Score=69.90 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=77.6
Q ss_pred ccceEEEccCc---cccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCcccc
Q 035500 100 QKLRVVDLSNI---TLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
.+|||+||..| +|--.++++|.+ =+.|+||+|.+..|. -+-.+.+||||... +|.|.+|+| +...|.|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~----LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah-sN~l~~fPe--~~~l~qL~ 455 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEE----LEELNLSGNKLTTLPDTVANLGRLHTLRAH-SNQLLSFPE--LAQLPQLK 455 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHH----hHHHhcccchhhhhhHHHHhhhhhHHHhhc-CCceeechh--hhhcCcce
Confidence 37899999987 455667776654 366999999999988 44578999999999 999999998 99999999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
++.+.-|.+.+. |--+++.+ |.|++|.|.
T Consensus 456 ~lDlS~N~L~~~-~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 456 VLDLSCNNLSEV-TLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred EEecccchhhhh-hhhhhCCC-cccceeecc
Confidence 999999999877 33333333 678888743
No 370
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.59 E-value=0.99 Score=54.60 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=91.5
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC----
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH---- 514 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~---- 514 (606)
++.++.|.- +++-++.+..+|.|.+-|.++....-. . .-...|.+.+|+| ++..++-.+.++++.+-+-.-
T Consensus 70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eiv-g--~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLA-DTNSICVITALGDIILVDPETLELEIV-G--NVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEec-ccceEEEEecCCcEEEEcccccceeee-e--eccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 377889988 889999999999999999887654321 1 2346799999999 678888888888877644311
Q ss_pred CCCC-----------cccccCCcceEEee----------------------cCCCeEEEEEccCCCEEEEEe-----CCC
Q 035500 515 IPPK-----------VADARGNSSVATYY----------------------DFEQLTSVHVNSTDDQFLASG-----YSK 556 (606)
Q Consensus 515 ~~~~-----------~~~l~~~~~i~t~~----------------------~~~~V~sV~~sp~g~~LaSgs-----~Dg 556 (606)
..+. .-.|. + .-..|+ -++.=++|+|--+|++||+.+ ..+
T Consensus 145 E~~L~~d~~~~sk~v~VGwG-r-keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWG-R-KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceeccc-c-cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 0000 00110 0 000111 111234699999999999843 237
Q ss_pred cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 557 NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
+|++||-+ |..-.+=. ...+-=.+++|-|.|..+.+
T Consensus 223 kirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred eEEEeccc-chhhcccC-cccccccceeecCCCCeEee
Confidence 99999987 43311111 12233347999998885433
No 371
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.57 E-value=0.003 Score=67.63 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=66.6
Q ss_pred cceEEEccCccccchHHHhhccCCCc--eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSS--CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
|||.+||+. .++.|+..=...|+. =+.+++++|+|+.|- .++.+-.|.-|.|+ -++|.++.++-|.-||+|.-
T Consensus 92 ~LRrLdLS~--N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN-an~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 92 RLRRLDLSK--NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN-ANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhceecccc--cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC-hhhhcchhHHHHHHhhhcch
Confidence 799999998 778888766666665 244666778888885 67788888888888 88888888888888999988
Q ss_pred EEcccccccch
Q 035500 177 LSMCETRIVNL 187 (606)
Q Consensus 177 l~~~~~~~~~l 187 (606)
||+-+|.+.-+
T Consensus 169 LslyDn~~q~i 179 (498)
T KOG4237|consen 169 LSLYDNKIQSI 179 (498)
T ss_pred hcccchhhhhh
Confidence 88888876654
No 372
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.024 Score=59.10 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=53.9
Q ss_pred EEccccchhccccc----cccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhc-CCchhhhh
Q 035500 130 LILRATNIRKLNMV----GRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK-LPYLMELR 204 (606)
Q Consensus 130 ~~~~~~~~~~l~~~----~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~-~~~l~~l~ 204 (606)
+||..|.|.+-+-+ ..+++|.||||. ||++.+-=..--.-.-||+.|.+.+|... ||++..+.+ ||.+.||.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhhhhhh
Confidence 55555666555433 368999999999 99988764332234559999999999887 998877665 99999995
No 373
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.50 E-value=2.9 Score=44.19 Aligned_cols=135 Identities=12% Similarity=0.190 Sum_probs=91.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcE-EEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEE-----ECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEV-IVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAG-----SDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtV-rIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSg-----S~DgtI 507 (606)
...++.+|..+..+|.+-.-|+. .+||..+++....+. +.|| -+|++ ++++|++. +..|.|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEE
Confidence 34567899888888888887765 589999988876554 2344 36888 56777765 457899
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeC------------------CCcEEEEECCCCce
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGY------------------SKNVALYDINTEKP 568 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~------------------Dg~I~IWDlrt~k~ 568 (606)
-|||.... -..+..|..++- -..+.+.|+|+.++.+-. +-.+..-|.++|+.
T Consensus 80 gVyd~~~~---------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 80 GVYDAARG---------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred EEEECcCC---------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 99999942 234445553322 456678888865555411 23455567788877
Q ss_pred eEE--Ec-CCCCCCeEEEEEeCCCC
Q 035500 569 LQL--FT-DMHREPINVAKFSHHSP 590 (606)
Q Consensus 569 v~~--l~-~gH~~~I~sV~fsP~g~ 590 (606)
+.. ++ .-|+..|..++++++|.
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred eeeeecCccccccceeeEEecCCCc
Confidence 655 32 13778899999999986
No 374
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.46 E-value=0.0075 Score=67.86 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=43.6
Q ss_pred EEEccccchhcccc-ccccccccEEecccCCCcccccccccccCccccEEEccccccc
Q 035500 129 VLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIV 185 (606)
Q Consensus 129 ~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 185 (606)
-||||+|+|.+|+| .|...+|+||||+ -|.+|.++ +|---+|+|++|...+|++.
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlS-rNQLt~LP-~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLS-RNQLTVLP-DAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccc-cchhccch-HHHhhhHHHHHHHhccCccc
Confidence 36888888888885 5678888888888 88888887 67777888888888888654
No 375
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=93.98 E-value=0.04 Score=66.16 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=77.5
Q ss_pred ccceEEEccCccccchH---HHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCcccc
Q 035500 100 QKLRVVDLSNITLRNDN---LLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
++|||.||+.+.=|... +.+|.+=. -|||+.+.|+.|. .+++|+.|.+|||++..++.++ .+....|++|+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~Lr----yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr 645 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLR----YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR 645 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhh----cccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhccccc
Confidence 58999999965555444 66666543 5999999999887 7889999999999988888888 56677799999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+|.+-...+.+==-.+..|-+|..|+.|.+
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhhee
Confidence 999977763332234466777777777763
No 376
>PLN03150 hypothetical protein; Provisional
Probab=93.98 E-value=0.057 Score=62.63 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=59.5
Q ss_pred eEEEccccchhc-c-ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|++|.+.- + ..++.+.+|++|+|. .|.++..-...|..|++|+.|.+.+|++... --..+.+|++|+.|.+
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEEC
Confidence 468888887752 2 245678999999999 7888754445689999999999999988742 2245788999999986
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..+
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 653
No 377
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.82 E-value=0.072 Score=66.13 Aligned_cols=102 Identities=23% Similarity=0.261 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhh-ccCCCceeEEEcccc-chhccccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDL-CQVGSSCHVLILRAT-NIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.+ .+... .-..+ +.|+|+++ .+..+..++.+++|++|+|..|++++.++. .+..+++|+.|
T Consensus 611 ~~L~~L~L~~s~l~~-L~~~~~~l~~L--k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-LWDGVHSLTGL--RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCccccc-cccccccCCCC--CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence 467777777755432 11111 01122 45777754 466666666777888888877777777764 36777888888
Q ss_pred Ecccc-cccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCET-RIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~-~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.|.++ .+..+- .-..|++|+.|.|++|.
T Consensus 687 ~L~~c~~L~~Lp----~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 687 DMSRCENLEILP----TGINLKSLYRLNLSGCS 715 (1153)
T ss_pred eCCCCCCcCccC----CcCCCCCCCEEeCCCCC
Confidence 88763 344442 22257777777777763
No 378
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.77 E-value=1.2 Score=51.20 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCcEEEEECCC-----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc-ccCCcc-eEEe
Q 035500 459 DGEVIVINHEN-----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD-ARGNSS-VATY 531 (606)
Q Consensus 459 DGtVrIWDi~t-----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~-l~~~~~-i~t~ 531 (606)
+++|.|.|..+ .+.+.++. -....+++.++|++...++++..+.+|.|.|+.+.+..... +..... +...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 45688888877 34444443 23568899999955444566677999999999885321100 000111 1122
Q ss_pred e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 532 Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 532 ~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
. +..+ ...+|.++|+...|---|..|..||+.+
T Consensus 372 evGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2 2233 4567888888888888999999999986
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=2.2 Score=50.11 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCC---c---eEEEEeccC-----CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 449 NPSLMAFGTLDGE-----VIVINHENG---N---VACYIPSIG-----GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 449 dg~~LaSGs~DGt-----VrIWDi~tg---~---~v~~~~~~g-----H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
..+++++-+.|++ ++|||.+.- . +.......+ ...++..++.+. +-..++.|=.||.|..+.-
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcC
Confidence 4467887776654 899998642 1 221112222 345678888886 4577888889999988864
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCE--EEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQ--FLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~--LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g 589 (606)
.-..... .+-.....++.+|+.+.+..++.. |++.. ..|..|.+....+ ...+. .|...++|..|++..
T Consensus 155 Di~RDrg-----sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr~p~~~~ld-~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 155 DILRDRG-----SRQDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSGRTPSLKVLD-NNGISLNCSSFSDGT 226 (933)
T ss_pred cchhccc-----cceeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecCCCcceeeec-cCCccceeeecCCCC
Confidence 4321110 112223446788999999988865 44443 5689999884443 44455 588899999999877
Q ss_pred CeEEEEEe
Q 035500 590 PLCLLLLH 597 (606)
Q Consensus 590 ~~LLaTgS 597 (606)
..++++++
T Consensus 227 ~qfIca~~ 234 (933)
T KOG2114|consen 227 YQFICAGS 234 (933)
T ss_pred ccEEEecC
Confidence 65555544
No 380
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.65 E-value=0.049 Score=60.82 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.9
Q ss_pred ccchhhhhhhccCCCCcccchhhH-H---HHHhhCCCceeccCCCCCc
Q 035500 301 DANVKLKKYISHHPSPICFEKHYR-E---YMIASLPQLEVLDNLPIGR 344 (606)
Q Consensus 301 l~~v~L~~~l~~~~npi~~~~~YR-e---yvI~~Lp~LkvLD~~~i~~ 344 (606)
++.+.|+ .+-+++||+|...-+| + +|-...|+|..||+.++..
T Consensus 267 ~k~l~Le-el~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 267 LKGLPLE-ELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred hcCCCHH-HeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCc
Confidence 5566777 8999999999776655 3 4555799999999988765
No 381
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.57 E-value=4.8 Score=41.79 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=88.4
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCC--CceEEEEec-cCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHEN--GNVACYIPS-IGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~t--g~~v~~~~~-~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
+.++ +|+++|.- .|..|.|-..+. ...+..... ..-.-.=.-++|+| +...||.+...|+|+++|+.....-.
T Consensus 4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~- 79 (282)
T PF15492_consen 4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFV- 79 (282)
T ss_pred eecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEE-
Confidence 4455 77766654 466676665443 122222111 11122345799999 67899999999999999998632110
Q ss_pred cccCCcceEEee--cCCCeEEEEEccC------CCEEEEEeCCCcEEEEECCCC-----cee--EEEcCCCCCCeEEEEE
Q 035500 521 DARGNSSVATYY--DFEQLTSVHVNST------DDQFLASGYSKNVALYDINTE-----KPL--QLFTDMHREPINVAKF 585 (606)
Q Consensus 521 ~l~~~~~i~t~~--~~~~V~sV~~sp~------g~~LaSgs~Dg~I~IWDlrt~-----k~v--~~l~~gH~~~I~sV~f 585 (606)
-.+...+. -..+|.++.|-+- ...++.-..+|.++=|-+..+ +.. ..+...+...|+++.|
T Consensus 80 ----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 80 ----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred ----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 01111122 2345677766432 235677778888888876432 222 3333335789999999
Q ss_pred eCCCCeEEEEEeCCC
Q 035500 586 SHHSPLCLLLLHLTT 600 (606)
Q Consensus 586 sP~g~~LLaTgS~Dg 600 (606)
+|...-++++|....
T Consensus 156 ~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN 170 (282)
T ss_pred cCCCCEEEEeccCCC
Confidence 999886666665544
No 382
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=5.4 Score=43.46 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++++| ++..+..+.. +++|.+.|..+++...... .|- .+ .++++.|.+....++-+.+++|.+.|.....
T Consensus 118 P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 118 PVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 66789999 6655555544 7999999999988887743 343 23 8999999544355555689999999966632
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKPLQL-FTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g~~L 592 (606)
... ............-..+.+.|++..+...-.. +.+...|..++..... ...+-. .-..+..+|.|.++
T Consensus 194 v~~-----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 194 VVR-----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred eec-----cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEE
Confidence 100 0000011222334678899999865555433 6999999998877654 331222 45668889999876
Q ss_pred EEEEeC
Q 035500 593 LLLLHL 598 (606)
Q Consensus 593 LaTgS~ 598 (606)
.+.-+.
T Consensus 268 yv~~~~ 273 (381)
T COG3391 268 YVANSQ 273 (381)
T ss_pred EEEecC
Confidence 665343
No 383
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.36 E-value=2.8 Score=45.57 Aligned_cols=134 Identities=7% Similarity=-0.000 Sum_probs=82.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
++.++.++.+|.+..+|..+|+.+..... +. ...+.. .+..++.++.||.+..+|..++.. .|...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~---~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~---~W~~~---- 321 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY-GS---VNDFAV---DGGRIYLVDQNDRVYALDTRGGVE---LWSQS---- 321 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC-CC---ccCcEE---ECCEEEEEcCCCeEEEEECCCCcE---EEccc----
Confidence 45677788899999999999988765442 11 112222 235788888999999999887421 11000
Q ss_pred EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCCeEEE
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~DgtIRc 604 (606)
... .....+... .+..++.++.||.+...|..+|+.+...+. ....+.+ -.+ .+.. +..++.||.+-+
T Consensus 322 ~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~--~~~~-l~v~t~~G~l~~ 390 (394)
T PRK11138 322 DLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVV--ADDK-LLIQARDGTVYA 390 (394)
T ss_pred ccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEE--ECCE-EEEEeCCceEEE
Confidence 000 111111112 267888899999999999999998877763 2233332 122 2333 556788887765
No 384
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.36 E-value=1.2 Score=49.51 Aligned_cols=144 Identities=9% Similarity=0.045 Sum_probs=85.7
Q ss_pred EEEEcCCCCCEEEEE---eCC-CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 442 QFEYNPSNPSLMAFG---TLD-GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 442 slafsP~dg~~LaSG---s~D-GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
.=+|+| ++..++-. ... ..+.++|+.+++........++ -..-+|+|++...+++...||...||-+.....
T Consensus 197 ~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 197 TPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred ccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 345888 66555443 222 4589999998776655554444 345689997666678888899777775554321
Q ss_pred CcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEe-CCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASG-YSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs-~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
. ...+.+... -..=.|+|+|+.++-.+ ..|. |.++|...+...+.-. +...-..-.|+|+|.+++
T Consensus 273 --------~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 273 --------N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred --------c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCCEEE
Confidence 1 111222211 22556899998666554 4454 6666776665533222 222222778999999877
Q ss_pred EEEeCCC
Q 035500 594 LLLHLTT 600 (606)
Q Consensus 594 aTgS~Dg 600 (606)
..+..+|
T Consensus 342 ~~~~~~g 348 (425)
T COG0823 342 FESSSGG 348 (425)
T ss_pred EEeccCC
Confidence 7664433
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.97 E-value=0.25 Score=49.65 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
-+..++.|+.+|.|.+|++.- |.....+. .-...|-+..-.-..+.+..+++.||.|+.|++.-.+ -
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----------~ 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK----------V 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCc----------e
Confidence 345889999999999999872 22211111 1122333333333345588999999999999987632 1
Q ss_pred eEEeecC--CCeEEEEEccCCCEEEEE--eCCCcEEEEECCC
Q 035500 528 VATYYDF--EQLTSVHVNSTDDQFLAS--GYSKNVALYDINT 565 (606)
Q Consensus 528 i~t~~~~--~~V~sV~~sp~g~~LaSg--s~Dg~I~IWDlrt 565 (606)
+-...++ .++.....+..+..++.+ |.|..++.|++..
T Consensus 137 ~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1111122 334444444455566666 6666777776653
No 386
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.88 E-value=0.25 Score=37.52 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=27.7
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV 472 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~ 472 (606)
+|.+++|+| ..+++|.|+.||.|.++.+ +++.
T Consensus 13 ~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 378999999 8889999999999999998 4443
No 387
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.73 E-value=0.04 Score=64.79 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=49.8
Q ss_pred EEccccchhc--cccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 130 LILRATNIRK--LNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 130 ~~~~~~~~~~--l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
|.|.+|++-. ...+-.|.+|..|+|. .|+|++|+.-|+.-++-|+-|.+.+|+.++|-+|+|.+..|.
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 3444444432 1233367888888888 788888888888888888888888888888888888765533
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=3.4 Score=43.25 Aligned_cols=164 Identities=11% Similarity=0.137 Sum_probs=103.8
Q ss_pred CceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 434 GNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 434 G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|+... ++++.|+| +.+.+.+......--||=...|+.+.++++.+- ..--+|.|.. ++.+.++-=.++++.++.+.
T Consensus 83 g~~~n-vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETAN-VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccc-ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 33334 78899999 667777777777777887778999999887662 2345677774 44556666678888888877
Q ss_pred CCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-e--eEEEcCCC-------CCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-P--LQLFTDMH-------REPINV 582 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~--v~~l~~gH-------~~~I~s 582 (606)
...........+-++....+ ....-.++|.|.+..|..+=+-+=+.||-...+. . +.... .+ -..|..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeecccc
Confidence 64321111111112222233 3448899999999877777666666666555432 1 11111 12 234677
Q ss_pred EEEeCCCCeEEEEEeCCCeE
Q 035500 583 AKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtI 602 (606)
+.|++...++++-+.+++.+
T Consensus 238 l~~~~~~~~LLVLS~ESr~l 257 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRL 257 (316)
T ss_pred ceecCCCCcEEEEecCCceE
Confidence 88888877788877777654
No 389
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.64 E-value=0.014 Score=63.91 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=103.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+....|-|.+++ ++.|+.+..|..||-. |+..... .-++....++|..+.+..++.+-..+.+.+||+.+...
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~---n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-- 109 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILEL---NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-- 109 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceeccc---CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH--
Confidence 445678885555 8888899999999965 3333222 23556788999986666677778889999999987421
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
....+.+..+-.-.+|++....++.|-..|.+.||...+.+.+.... .|..++++++|.+.+. .+.++.|
T Consensus 110 -------qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~--vil~dcd 179 (615)
T KOG2247|consen 110 -------QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY--VILCDCD 179 (615)
T ss_pred -------HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce--eeecCcH
Confidence 11122222222226788888888888888999999999887766665 3999999999999875 4556666
Q ss_pred Ce
Q 035500 600 TM 601 (606)
Q Consensus 600 gt 601 (606)
.+
T Consensus 180 ~~ 181 (615)
T KOG2247|consen 180 NT 181 (615)
T ss_pred HH
Confidence 54
No 390
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.63 E-value=0.85 Score=50.82 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=65.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...+.|.+ .+ .+|+-...++|.|+.--+......++. + ..+..+-. |..|...+. +.|.+||+.+
T Consensus 71 g~~~vw~~-~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~--~~~~~If~----G~LL~~~~~-~~i~~yDw~~----- 135 (443)
T PF04053_consen 71 GLSFVWSS-RN-RYAVLESSSTIKIYKNFKNEVVKSIKL-P--FSVEKIFG----GNLLGVKSS-DFICFYDWET----- 135 (443)
T ss_dssp -SEEEE-T-SS-EEEEE-TTS-EEEEETTEE-TT------S--S-EEEEE-----SSSEEEEET-TEEEEE-TTT-----
T ss_pred eeEEEEec-Cc-cEEEEECCCeEEEEEcCccccceEEcC-C--cccceEEc----CcEEEEECC-CCEEEEEhhH-----
Confidence 45678988 44 577777789999974222222222222 1 12333322 355555554 4899999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-----------ceeEEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-----------KPLQLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-----------k~v~~l~~gH~~~I~sV~fsP~ 588 (606)
...++..... +|..|.|++++++++-.+.+ .+.|++.... .....+. .-...|.+..|.-+
T Consensus 136 -----~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 136 -----GKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED 207 (443)
T ss_dssp -------EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT
T ss_pred -----cceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC
Confidence 3456666544 38999999999999998864 7777765543 0222222 12467888888765
No 391
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.44 E-value=0.044 Score=51.32 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=94.6
Q ss_pred CCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCc
Q 035500 82 RPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSL 160 (606)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~ 160 (606)
|+|-|-.-|=.--|-.-|+-|..++|+||.| |+|=..+.+.=..-.+|||+.|+|+.+. -+-..+-|..||+. .|++
T Consensus 35 ssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~-~N~l 112 (177)
T KOG4579|consen 35 SSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR-FNPL 112 (177)
T ss_pred ccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc-cCcc
Confidence 6776653333333445688999999999988 4566777777667788999999999885 35578899999999 7888
Q ss_pred ccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 161 ASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 161 ~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.-+++-.|. +-+|-.|..-+|.++.+-++ +=-+.+|.|..|+
T Consensus 113 ~~~p~vi~~-L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lg 154 (177)
T KOG4579|consen 113 NAEPRVIAP-LIKLDMLDSPENARAEIDVD-LFYSSLPALIKLG 154 (177)
T ss_pred ccchHHHHH-HHhHHHhcCCCCccccCcHH-HhccccHHHHHhc
Confidence 888877666 88999999999999999776 5557789999887
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.41 E-value=3.3 Score=46.99 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEeeCC---CCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe--EEEEEccCCCEEEEEeC
Q 035500 480 GGTNSVLGLCWLKKY---PSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL--TSVHVNSTDDQFLASGY 554 (606)
Q Consensus 480 gH~~~V~~L~fsp~~---~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V--~sV~~sp~g~~LaSgs~ 554 (606)
|.-.-|.++.|.|.. ...+++...-+.|.+|-+-......+.+. ......+...-+| ....|||....++.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l-~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLL-MSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccce-eeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 333459999998842 22466677788999999874221111110 0011111112222 45669999988777665
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 555 SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...--+++++.............+.|.|.+|.++|..++++-+
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVG 175 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeC
Confidence 5454567777543322222124689999999999998766544
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.18 E-value=14 Score=40.18 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=68.3
Q ss_pred eeEEEEcCCCCCEEEEE-eCCC----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----------
Q 035500 440 PRQFEYNPSNPSLMAFG-TLDG----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---------- 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-s~DG----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---------- 504 (606)
+..+.++| +++++|.+ +..| +++|+|+++|+.+... +.. . ....+.|.+++...+++...+
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 55678999 88888865 4444 5999999999776522 111 1 122399998544444444322
Q ss_pred CeEEEEeCCCCCCCcccccCCcceEEeecC--CC-eEEEEEccCCCEEEEE-eCC---CcEEEEECCCC
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSVATYYDF--EQ-LTSVHVNSTDDQFLAS-GYS---KNVALYDINTE 566 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~-V~sV~~sp~g~~LaSg-s~D---g~I~IWDlrt~ 566 (606)
..|..|.+.+.. ......+... .. ...+..++++++++.. +.. ..+.+.|+..+
T Consensus 202 ~~v~~~~~gt~~--------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQ--------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-G--------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCCh--------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 237777777632 1223455542 22 5688899999865543 332 35788888874
No 394
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.12 E-value=3.2 Score=47.82 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=37.0
Q ss_pred CCcEEEEECCC-----CceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINT-----EKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt-----~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++.|.+.|.++ .+.+..++. ....+.+.++|+|+++++++..+.+|..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 35689999988 355666663 4667789999999999999988887753
No 395
>PLN03150 hypothetical protein; Provisional
Probab=92.02 E-value=0.2 Score=58.23 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=59.1
Q ss_pred ceEEEccCccccchHHHhhccCCCceeEEEccccchh-ccc-cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 102 LRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIR-KLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
++.++|+++.+.-..-.+++. =-.=+.|+|++|.+. .+. .++.+.+|++|+|. +|+++..-.+.|..|++|+.|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEEC
Confidence 445566665553222222222 123477999999987 554 57899999999999 78888655567999999999999
Q ss_pred cccccc
Q 035500 180 CETRIV 185 (606)
Q Consensus 180 ~~~~~~ 185 (606)
.+|++.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 999876
No 396
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.93 E-value=5.3 Score=42.39 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=93.0
Q ss_pred eceeEEEEcCCCCCEEEEEeC-----------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 438 VRPRQFEYNPSNPSLMAFGTL-----------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~-----------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
.+.......| +|.+.++... -|.|+.+|. .+..+..+. +|-..-++|+|+|++..++++=+..+.
T Consensus 111 ~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 111 NRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEEEEeCCCCe
Confidence 4455666788 6766655333 143444443 344444333 444556799999965455555566688
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
|.-|++...... .........+.. ...--.++.-.+|.+.+++...| .|..|+.. ++.+..+.. ....+++++
T Consensus 187 i~r~~~d~~~g~---~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~ 261 (307)
T COG3386 187 IHRYDLDPATGP---IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA 261 (307)
T ss_pred EEEEecCcccCc---cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence 887777631000 000111122221 23345566677788876555554 99999998 998888874 447888888
Q ss_pred Ee-CCCCeEEEEEeCCCe
Q 035500 585 FS-HHSPLCLLLLHLTTM 601 (606)
Q Consensus 585 fs-P~g~~LLaTgS~Dgt 601 (606)
|- |+...|++|+...+.
T Consensus 262 FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 262 FGGPDLNTLYITSARSGM 279 (307)
T ss_pred EeCCCcCEEEEEecCCCC
Confidence 84 666778888776643
No 397
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.92 E-value=10 Score=39.32 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=89.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
.-+....+++.|+-.|.+.--|..+|+....-.+ +. .+-+-+.- -++.++-|...|-+.+-+++++.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~--RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs-------- 84 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GV--RIECSAIV--VGDFVVLGCYSGGLYFLCVKTGS-------- 84 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-Cc--eeeeeeEE--ECCEEEEEEccCcEEEEEecchh--------
Confidence 3344556888899999999999999998774432 21 23322222 23578899999999999999852
Q ss_pred CcceEEeecCCCeE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 525 NSSVATYYDFEQLT-SVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 525 ~~~i~t~~~~~~V~-sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..-.+..-+.|. .-...+++.++..|+.|++.+..|+++...+...+-+ .+..-+=+.+|....++++......
T Consensus 85 --~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 85 --QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred --heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceE
Confidence 222333222221 2235678999999999999999999998888776521 1222223445533444544443333
No 398
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.39 E-value=0.075 Score=57.48 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=90.5
Q ss_pred eeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 127 CHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
-.+++|+-|++-.+. -+.++.-|.|..+- ++.+-++..---+.+|+||+|++.+|-...|.+....|.. |++|..
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~l-snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~---Lq~Lnl 465 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVL-SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR---LQTLNL 465 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHh-hcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh---hheecc
Confidence 457899999998886 55677788888777 8888888877788999999999999999988776665554 555531
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCc----hhhHHHhhc----cccCcccchhhhcccchhhhhccCCCCCCCc
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDN----EDQIVCKKF----RDADEVELPKYLRTMNLMELSSCLSPNLNGH 277 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (606)
. .+|++-. -++..-||+ .|...+|-+ |..-|++|++|+++||.+
T Consensus 466 S------------------------~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~----~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 466 S------------------------FNRFRMLPECLYELQTLETLLASNNQIGSVDPS----GLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred c------------------------ccccccchHHHhhHHHHHHHHhccccccccChH----HhhhhhhcceeccCCCch
Confidence 1 1111111 111122433 566667666 666789999999999988
Q ss_pred ceecccccC
Q 035500 278 AEMLDEVND 286 (606)
Q Consensus 278 ~~~~~~~~~ 286 (606)
--|-..++.
T Consensus 518 q~IPp~Lgn 526 (565)
T KOG0472|consen 518 QQIPPILGN 526 (565)
T ss_pred hhCChhhcc
Confidence 777766654
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.10 E-value=14 Score=37.54 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
.++.++.|+.+| +.+++.. ....... .+...|..+...|. -+.++.-+ |+.+.++++..............+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 567999999999 9999983 2333332 22334999999884 34555444 599999998874332110000000
Q ss_pred -----eEEeecCCCeEEEE--EccCCCEEEEEeCCCcEEEEECCCC-----ceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 528 -----VATYYDFEQLTSVH--VNSTDDQFLASGYSKNVALYDINTE-----KPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 528 -----i~t~~~~~~V~sV~--~sp~g~~LaSgs~Dg~I~IWDlrt~-----k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.........+...+ -...+.........++|.+|..... +..+++. -...+.+++|.+ .. ++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~--~~-i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG--NK-ICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC--CE-EEE
Confidence 00111122233333 1123333334444468888877653 4556666 358889999983 33 445
Q ss_pred EeCCCe
Q 035500 596 LHLTTM 601 (606)
Q Consensus 596 gS~Dgt 601 (606)
|..++.
T Consensus 154 ~~~~~f 159 (275)
T PF00780_consen 154 GTSKGF 159 (275)
T ss_pred EeCCce
Confidence 544443
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.98 E-value=0.71 Score=35.04 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 035500 534 FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK 567 (606)
Q Consensus 534 ~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k 567 (606)
...|..++|+|..+++|.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 345999999999999999999999999988 443
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.92 E-value=6 Score=45.82 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=73.5
Q ss_pred eeEEEEcCCCCCEEEEEe------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGT------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl 512 (606)
+.+.+++| +++.+|..- .|+.-.+|=...+.....+. .+. ....-.|+| ++..+++.+.. ..+++.+-
T Consensus 352 vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 352 ITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cCC--CCCCceECC-CCCceEEEecCcceEEEecc
Confidence 66788999 888777665 34444444332222222221 132 377788998 44556555432 12222221
Q ss_pred CCCCC-CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEE---EECCCCce----eEEEcCCCCCCeEEEE
Q 035500 513 NHIPP-KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL---YDINTEKP----LQLFTDMHREPINVAK 584 (606)
Q Consensus 513 ~~~~~-~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I---WDlrt~k~----v~~l~~gH~~~I~sV~ 584 (606)
..... ......+..... .....|.++.|+|+|..++... ++.|.+ -....|.. .+.+..+-...+.++.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 11000 000000011111 2345699999999998777655 366766 33333431 1223312334468899
Q ss_pred EeCCCCe
Q 035500 585 FSHHSPL 591 (606)
Q Consensus 585 fsP~g~~ 591 (606)
|.+++.-
T Consensus 504 W~~~~~L 510 (591)
T PRK13616 504 WRTGDSL 510 (591)
T ss_pred EecCCEE
Confidence 9998873
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=1 Score=53.88 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
-+..+|.|++.|.|-..|+... ..+......-.++|++++|+. ++..++.|-.+|-|.+||+..+ +.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~----------k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRA----------KIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCC----------cce
Confidence 4457899999999999887642 221122223467899999996 7788999999999999999984 344
Q ss_pred EEeec-CCC---eEEEEEccCCCEEEEEeCCCc
Q 035500 529 ATYYD-FEQ---LTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 529 ~t~~~-~~~---V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+.+.. ..+ |..+.|-.++..+.++..-|.
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 44432 222 444445445556666666564
No 403
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.20 E-value=14 Score=38.96 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=82.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++-- .+ .+++|. ++.|.+|++...+ ....... .....+.++.... ++++.|.....+.++..+...
T Consensus 91 V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~-- 160 (321)
T PF03178_consen 91 VTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN-- 160 (321)
T ss_dssp EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT--
T ss_pred ceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhhee-cceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC--
Confidence 5555443 34 454444 4889999998777 4443322 2334677777763 488888888888887655421
Q ss_pred cccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-------Cc--e--eEEEcCCCCCCeEEE-
Q 035500 519 VADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT-------EK--P--LQLFTDMHREPINVA- 583 (606)
Q Consensus 519 ~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-------~k--~--v~~l~~gH~~~I~sV- 583 (606)
..+.... ....++++.+-++++.++.+..+|.+.++.... +. . ...+. ....|+++
T Consensus 161 -------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~ 231 (321)
T PF03178_consen 161 -------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFR 231 (321)
T ss_dssp -------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEE
T ss_pred -------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEE
Confidence 1122121 233488888886667999999999999987762 12 2 22333 34677777
Q ss_pred --EEeC--CCCe-----EEEEEeCCCeEE
Q 035500 584 --KFSH--HSPL-----CLLLLHLTTMSR 603 (606)
Q Consensus 584 --~fsP--~g~~-----LLaTgS~DgtIR 603 (606)
++.| .+.. .++-++.+|.|=
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEE
Confidence 5555 2221 355566676654
No 404
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.92 E-value=4.2 Score=43.01 Aligned_cols=104 Identities=10% Similarity=0.068 Sum_probs=68.5
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeE-EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-----Cc
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCV-RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-----KN 557 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtI-klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-----g~ 557 (606)
...+++.+|..+..++-+-.-|+. .+||.+++..... +. ..+-+.|.+ .-.|+++|+++++.-.| |.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-~~-a~~gRHFyG-----Hg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-LW-APPGRHFYG-----HGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-Ec-CCCCCEEec-----CEEEcCCCCEEEEeccccCCCcEE
Confidence 345677788666667777776654 4799988532110 00 111122222 35599999999988444 89
Q ss_pred EEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 558 VALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 558 I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
|-+||.+ +-+.+.++. .|.-.-..+.+.|+++.|++.
T Consensus 79 IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred EEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEE
Confidence 9999999 446678888 566666789999999765554
No 405
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.58 E-value=2.1 Score=47.53 Aligned_cols=139 Identities=11% Similarity=0.168 Sum_probs=77.9
Q ss_pred EEEcCCCCCEEEE-EeCCCcEEEE--ECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 443 FEYNPSNPSLMAF-GTLDGEVIVI--NHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 443 lafsP~dg~~LaS-Gs~DGtVrIW--Di~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
-+|+| ||+.+|. ...||...|| |..++.... +. .-.+.-..=.|+|++...+++.+..|.-.||-..-...
T Consensus 243 P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-- 316 (425)
T COG0823 243 PAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-- 316 (425)
T ss_pred ccCCC-CCCEEEEEECCCCCccEEEEcCCCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--
Confidence 36999 7766665 4556665555 555554322 11 11222225678996655566667777666665554221
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-KN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-g~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.....++...... .-.|+|+|.+++..+.. |. |.+.|+.++...+.+. +......-.|.|++..++.+
T Consensus 317 -----~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 317 -----QVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred -----ceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEe
Confidence 1112233332222 56689999987776643 44 7777887766555554 33444455666666654443
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.52 E-value=6.6 Score=45.59 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
-+...++-+...++.|||...+.......+ ...+.|.++.|... ++..+++.|..+.|.++--....-... .+...+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~ 117 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAP 117 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-Ccccce
Confidence 333444445556789999988775443333 55778999999642 456788899999999987532111100 111334
Q ss_pred eEEee---c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 528 VATYY---D-FEQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 528 i~t~~---~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
+..+. + ..+|.+..|.++|.+++++| +.+.|+|-.
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 44443 2 35699999999988887666 568888654
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=1.5 Score=52.80 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=87.2
Q ss_pred EeCCCcEEEEECCCCceEE---EEeccC------CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 456 GTLDGEVIVINHENGNVAC---YIPSIG------GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 456 Gs~DGtVrIWDi~tg~~v~---~~~~~g------H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
.+.+-.|.+||+++-..-. ...+.. ....+.++.|+|.-+...+.+..|+.|++.-+.... .
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~---------~ 190 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA---------Q 190 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh---------h
Confidence 3344477889976522211 111112 223456888999777778889999999998877632 2
Q ss_pred ceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 527 SVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT---DMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 527 ~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~---~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.+.++.....+++|+|+|.|..++.|-..|++.-|-..-. ....++ ..-...|.+|.|--...++++-+-
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence 3344555566899999999999999999999999976532 222222 112368999999877776655443
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.32 E-value=30 Score=35.98 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEec
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPS 478 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~ 478 (606)
.-.+.|.. ++.++-+.+.-| .|+.+|..+|+......+
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l 86 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL 86 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC
Confidence 44567755 677778877776 788999999988765554
No 409
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.31 E-value=3.9 Score=47.17 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC------CeEEEEeCCCCC
Q 035500 449 NPSLMAFGTLDG------EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS------GCVRLFDLNHIP 516 (606)
Q Consensus 449 dg~~LaSGs~DG------tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D------gtIklWDl~~~~ 516 (606)
.+.+++.||.++ .|..+|..++........ .+.....+++... +...++||.| .++-.||.++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~- 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTN- 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCC-
Confidence 566778888774 678899888765543333 3444456666663 3678889998 35666776663
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-----NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-----~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.|....+..+-+....+..+ .|.+.|.||.|| ++-.||.++.+=-..-+ +.......+...-+..
T Consensus 360 ----~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 ----QWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGK 429 (571)
T ss_pred ----ceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCE
Confidence 23323333333333333333 577888999885 47788888764211111 1123333333334566
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
+.+.||.|+.-+
T Consensus 430 iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 430 LYIIGGGDGSSN 441 (571)
T ss_pred EEEEcCcCCCcc
Confidence 899999887653
No 410
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=22 Score=38.77 Aligned_cols=149 Identities=15% Similarity=0.102 Sum_probs=92.7
Q ss_pred eeEEEEcCCCC-CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNP-SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg-~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..+.+.| ++ +..++-.....+.+.+... .........+- ..-.++..++.+....++...++.|.+.|....
T Consensus 33 ~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--- 106 (381)
T COG3391 33 PGGVAVNP-DGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--- 106 (381)
T ss_pred CceeEEcC-ccCEEEEEeecCceeeeccccc-ceeeeeccCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---
Confidence 34456777 44 3333333333566666552 22222111111 234567777755556666677789999996652
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
....+..-...-..+++.|+++.+..+.. ++++.+.|..+.+.......+- .+ ..++++|+|..++++
T Consensus 107 -------~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 107 -------TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred -------ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEE
Confidence 22333332235678889999976655544 6899999999998887766432 23 889999999988888
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-+.++++-
T Consensus 178 ~~~~~~v~ 185 (381)
T COG3391 178 NSDDNTVS 185 (381)
T ss_pred ecCCCeEE
Confidence 87777654
No 411
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.72 E-value=42 Score=36.99 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 535 EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 535 ~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++..|++||+++++|.-..+|.+.++...-.+...++...-......+.|.-++
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 4588999999999999999999999887776666666653334555667776544
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.50 E-value=16 Score=39.41 Aligned_cols=149 Identities=10% Similarity=0.057 Sum_probs=80.0
Q ss_pred ceeEEEEcCCCCCEEEEEe-----------CCC-cEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC
Q 035500 439 RPRQFEYNPSNPSLMAFGT-----------LDG-EVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS 504 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs-----------~DG-tVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D 504 (606)
.++.|+|.+ +|++.++-. ..+ .|.+++-.. |+......+...-....+++|.+ ++ .++ ++..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 377899999 888777642 223 788886543 33322112223334568899987 44 444 4444
Q ss_pred CeEEEEeCCCCCCCcccccCCcce-EEeec-----CCCeEEEEEccCCCEEEEEeCC-------------------CcEE
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSV-ATYYD-----FEQLTSVHVNSTDDQFLASGYS-------------------KNVA 559 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i-~t~~~-----~~~V~sV~~sp~g~~LaSgs~D-------------------g~I~ 559 (606)
...++.|........ - ....+ ..+.. +.....+.|.|+|.+.++-+.. +.|.
T Consensus 91 ~i~~~~d~~gdg~ad--~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKAD--G-EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCC--C-ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 433344544321100 0 01111 11221 3447889999999876655521 3455
Q ss_pred EEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 560 LYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 560 IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
-+|..+++. ..+..++ ...+.++|+|+|. ++++-.
T Consensus 168 r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKL-RVVAHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEecCCCeE-EEEecCc-CCCccceECCCCC-EEEEcc
Confidence 566655443 3333343 3456899999887 455533
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.45 E-value=6.1 Score=44.24 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=86.6
Q ss_pred EEEcCCCCCEEEE-EeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-------CCEEEEEECCCeEEEEeCCC
Q 035500 443 FEYNPSNPSLMAF-GTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-------PSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 443 lafsP~dg~~LaS-Gs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-------~~~LaSgS~DgtIklWDl~~ 514 (606)
+-.+-++.+++.. |+.-..++--|++.|+.+.... -|... -+.|.|.. ...|+--| |..|.=-|.+.
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~--~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~ 546 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWD--LKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRA 546 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEee--cCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccc
Confidence 3345456666655 5555667778899999988776 34433 45666632 23454444 44444446655
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEcc----CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNS----TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp----~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
.. ..+..-..+..++.-.|+. .+.++|.||..|.|++||--..+.-..++ +-...|..|..+.+|.
T Consensus 547 ~g---------NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk 616 (776)
T COG5167 547 RG---------NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGK 616 (776)
T ss_pred cC---------CceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCc
Confidence 31 1233223233333333333 35699999999999999865444444455 5668899999999999
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
+++|||-
T Consensus 617 ~ilaTCk 623 (776)
T COG5167 617 HILATCK 623 (776)
T ss_pred EEEEeec
Confidence 9999874
No 414
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=88.30 E-value=4.3 Score=48.27 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 450 PSLMAFGTLDGEVIVINHENG--NVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg--~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
+.....|-.+..+..||.+-. +.+.. ...........|++-. ..+++|.||.+|.||+||--. ..
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g----------~~ 609 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG----------KR 609 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccc----------hh
Confidence 345567888888999998753 22221 1111223345555544 457899999999999999332 12
Q ss_pred ceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 035500 527 SVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDI 563 (606)
Q Consensus 527 ~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDl 563 (606)
.-..+.+ ..+|.+|..+.+|.++++.+. ..+.++|.
T Consensus 610 AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 610 AKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 2233444 688999999999998877765 56777775
No 415
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.27 E-value=6.8 Score=45.49 Aligned_cols=87 Identities=15% Similarity=0.260 Sum_probs=56.6
Q ss_pred EEEEEEC-CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEc--cCCCEEEEEeCCCcEEEEECC-----CC--
Q 035500 497 KLVAGSD-SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVN--STDDQFLASGYSKNVALYDIN-----TE-- 566 (606)
Q Consensus 497 ~LaSgS~-DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~s--p~g~~LaSgs~Dg~I~IWDlr-----t~-- 566 (606)
+++.... ..++.|||.+.+. -..-.++..++.|.++.|. |+++.+.+.|..+.|.+|--. ..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~--------lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGV--------LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcE--------EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 4444433 4478999998842 1122344557789999996 457889999999999998542 12
Q ss_pred --ceeEEEcC-CCC-CCeEEEEEeCCCCe
Q 035500 567 --KPLQLFTD-MHR-EPINVAKFSHHSPL 591 (606)
Q Consensus 567 --k~v~~l~~-gH~-~~I~sV~fsP~g~~ 591 (606)
.+++.+.. .|+ .+|.+..|-++|..
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~L 142 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTL 142 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeE
Confidence 12333221 244 68999999999873
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.27 E-value=4.6 Score=44.59 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=67.0
Q ss_pred eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEee--CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-
Q 035500 457 TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLK--KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD- 533 (606)
Q Consensus 457 s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp--~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~- 533 (606)
....++.+||+.+.+.++++.+-........|.|.. ....-++.+....+|-.|--..... |. .+.+.....
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~----W~-a~kVi~ip~~ 293 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE----WA-AEKVIDIPAK 293 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE----EE-EEEEEEE--E
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC----ee-eeEEEECCCc
Confidence 356789999999999999888633233567888854 2222366666666665554322110 11 001111110
Q ss_pred -----------------CCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCc---eeEEEcCC-------C--------C
Q 035500 534 -----------------FEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEK---PLQLFTDM-------H--------R 577 (606)
Q Consensus 534 -----------------~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k---~v~~l~~g-------H--------~ 577 (606)
..-|++|..|.++++|..+ -.+|.|+.||+.... .+-.+..| | .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 1227999999999866655 568999999998642 22222211 0 1
Q ss_pred CCeEEEEEeCCCCeEEEEEe
Q 035500 578 EPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS 597 (606)
+....+..|.+|+.+.+|.|
T Consensus 374 GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp S----EEE-TTSSEEEEE--
T ss_pred CCCCeEEEccCCeEEEEEee
Confidence 23467889999999888876
No 417
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=87.82 E-value=7.3 Score=42.83 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=71.6
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE-------------------------EEe----------------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC-------------------------YIP---------------- 477 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~-------------------------~~~---------------- 477 (606)
.|..+.|.+ +..-+|.|...|.|-||-+...+... .+.
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 377888998 66689999999999998754321110 000
Q ss_pred ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE-------ee--cCCCeEEEEEcc----
Q 035500 478 SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT-------YY--DFEQLTSVHVNS---- 544 (606)
Q Consensus 478 ~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t-------~~--~~~~V~sV~~sp---- 544 (606)
.....++|++++.+ +-..++.|..+|++.|.|+|... -+.. .. ....++++.|..
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPa----------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPA----------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTE----------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCe----------EEeeccccccccccccccCeeEEEEEEEecC
Confidence 12246889999987 45789999999999999998731 1111 11 123377888872
Q ss_pred -CC---CEEEEEeCCCcEEEEECC
Q 035500 545 -TD---DQFLASGYSKNVALYDIN 564 (606)
Q Consensus 545 -~g---~~LaSgs~Dg~I~IWDlr 564 (606)
++ -.++.|...|.+.+|.+-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEe
Confidence 22 378888889999999775
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.64 E-value=8.8 Score=41.76 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=62.7
Q ss_pred EEEEEEeeCCCCEE-EEEECCC----eEEEEeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCC---
Q 035500 485 VLGLCWLKKYPSKL-VAGSDSG----CVRLFDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYS--- 555 (606)
Q Consensus 485 V~~L~fsp~~~~~L-aSgS~Dg----tIklWDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~D--- 555 (606)
+...+++|+ ++++ ++-+..| +++++|+.++. .+. .+.. .....+.|.+++..|+....+
T Consensus 126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~----------~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGK----------FLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTE----------EEEEEEEE-EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCc----------CcCCcccc-cccceEEEeCCCCEEEEEEeCccc
Confidence 335677884 4554 4545555 59999999842 221 1111 112339999998866555433
Q ss_pred --------CcEEEEECCCCce--eEEEcCCCCCC-eEEEEEeCCCCeEEEEEeCCCe
Q 035500 556 --------KNVALYDINTEKP--LQLFTDMHREP-INVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 556 --------g~I~IWDlrt~k~--v~~l~~gH~~~-I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
..|+.|.+.++.. ...++...... ...+..++++++++++.+....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 2378888887644 35555322233 6688899999998887766554
No 419
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=87.35 E-value=0.19 Score=54.39 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=59.6
Q ss_pred EEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEccc-ccccchhhhhHHhhcCCchhhhhh
Q 035500 129 VLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE-TRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 129 ~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~-~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.|+|-.|.|+-+. .|+.+++|..|+|. +|.|+-|+++=|..++.|.+|.+-+ |+|..|-. .+..+|.+|+.|-.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~gL~slqrLll 147 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--GAFGGLSSLQRLLL 147 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh--hHhhhHHHHHHHhc
Confidence 4677788888886 67788888888998 8889999888899999998888888 88888743 45667777777763
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.33 E-value=17 Score=37.16 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=68.4
Q ss_pred EEEEEeeCCCCEEEEEECCCeEEEEeC--CCCCCCcccccCCcceEEeec----CCC-eEEEEEccCCCEEEEEeCCCcE
Q 035500 486 LGLCWLKKYPSKLVAGSDSGCVRLFDL--NHIPPKVADARGNSSVATYYD----FEQ-LTSVHVNSTDDQFLASGYSKNV 558 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~DgtIklWDl--~~~~~~~~~l~~~~~i~t~~~----~~~-V~sV~~sp~g~~LaSgs~Dg~I 558 (606)
.+++|+.+.-...+.-|.+-+|.-||. .++.... +..+..++. ..+ --.+++.-.|+++++.-..++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC-----cceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 478898643334566688889988994 4432110 122222221 111 1233445568888888888999
Q ss_pred EEEECCCCceeEEEcCCCCCCeEEEEEe-CCCCeEEEEEeC
Q 035500 559 ALYDINTEKPLQLFTDMHREPINVAKFS-HHSPLCLLLLHL 598 (606)
Q Consensus 559 ~IWDlrt~k~v~~l~~gH~~~I~sV~fs-P~g~~LLaTgS~ 598 (606)
...|..+|+.+.++.. -+..|++++|- |+-..+.+|+..
T Consensus 236 ~~~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEEEehh
Confidence 9999999999999984 58999999995 332334555543
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.16 E-value=29 Score=35.49 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe-CCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD-LNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD-l~~~~~ 517 (606)
+.+.+++| +++.+|... .++.-.+|-...+....... .+. .+..-.|+++ +...+....+...+++. ...+.
T Consensus 26 ~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~--~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~- 99 (253)
T PF10647_consen 26 VTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGG--SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT- 99 (253)
T ss_pred ccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCC--ccccccccCC-CCEEEEEcCCCceEEEEecCCCc-
Confidence 67889999 777776655 23333444433333322221 132 5778889985 45444445555666664 22211
Q ss_pred CcccccCCcceE-EeecC-CCeEEEEEccCCCEEEEEe---CCCcEEEEECCC---C------ceeEEEcCCCCCCeEEE
Q 035500 518 KVADARGNSSVA-TYYDF-EQLTSVHVNSTDDQFLASG---YSKNVALYDINT---E------KPLQLFTDMHREPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~-t~~~~-~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt---~------k~v~~l~~gH~~~I~sV 583 (606)
..++. ..... ..|.++.++|+|..++... .++.|.+--+.. + .+..... .....+..+
T Consensus 100 -------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v 171 (253)
T PF10647_consen 100 -------GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDV 171 (253)
T ss_pred -------ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceee
Confidence 11111 11111 2799999999998666554 357777765542 2 1122222 234689999
Q ss_pred EEeCCCCeEEEEEeCCC
Q 035500 584 KFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~Dg 600 (606)
.|.+++..++++...+.
T Consensus 172 ~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 172 AWSDDSTLVVLGRSAGG 188 (253)
T ss_pred eecCCCEEEEEeCCCCC
Confidence 99999986555555554
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.93 E-value=3.8 Score=47.25 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe------EEEEeCCCCCC
Q 035500 449 NPSLMAFGTLDGE-----VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC------VRLFDLNHIPP 517 (606)
Q Consensus 449 dg~~LaSGs~DGt-----VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt------IklWDl~~~~~ 517 (606)
+|.+.|.||.||. |-.||..+.+....-+ ......+......++...+.||.|+. +..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--
Confidence 7778889999975 5667877655433221 22223333333335567788886654 455665552
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-----NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-----~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.|....+..+-+....+..+ ++.+.+.||.|+ +|..||.++.+-...-. -..+...+.....+..+
T Consensus 455 ---~W~~~~~M~~~R~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~--m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 455 ---TWTLIAPMNTRRSGFGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP--MTSPRSAVGVVVLGGKL 525 (571)
T ss_pred ---ceeecCCcccccccceEEEE----CCEEEEECCccCCCccceEEEEcCCCCceeEccc--CccccccccEEEECCEE
Confidence 23222222222222222222 467888888775 37789998775433211 12222223333345568
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
++.|+.|+.-++
T Consensus 526 y~vGG~~~~~~l 537 (571)
T KOG4441|consen 526 YAVGGFDGNNNL 537 (571)
T ss_pred EEEecccCcccc
Confidence 999999987554
No 423
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.84 E-value=0.35 Score=51.49 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=26.7
Q ss_pred cccCccccEEEcccccccchhh--hhHHhhcCCchhhhhhceec
Q 035500 168 FSCMPYLMCLSMCETRIVNLWT--TTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~~~~l~~--~~~~l~~~~~l~~l~~~~~~ 209 (606)
|...|.|+.|.|.+|-..-.-. -..+|+.+|.|+||+|..|+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 5566777777777763321100 01356778889999988877
No 424
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.68 E-value=17 Score=38.63 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=84.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARG 524 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~ 524 (606)
|.|..+.++.+--..++|.-|+..+++... +. +.+.+.++..-- .+..|+++.. -+.+++......
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~---~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~------- 97 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP---SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGK------- 97 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE---CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCce-------
Confidence 888555577777788999999998776543 22 223344444432 3455665543 356677654221
Q ss_pred CcceEEee-c--CCCeEEEEEccCCCEEEEEeC------C-----CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 525 NSSVATYY-D--FEQLTSVHVNSTDDQFLASGY------S-----KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 525 ~~~i~t~~-~--~~~V~sV~~sp~g~~LaSgs~------D-----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...+.... . ....+.+...|+|.+.++... + |.++-+|. .+..++.+. .|-..-+.++|||+++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCC
Confidence 01111111 1 133678888999987665543 1 44555554 455565555 4556678899999999
Q ss_pred eEEEEEeCCCeE
Q 035500 591 LCLLLLHLTTMS 602 (606)
Q Consensus 591 ~LLaTgS~DgtI 602 (606)
.++++=+..+.|
T Consensus 176 tly~aDT~~~~i 187 (307)
T COG3386 176 TLYVADTPANRI 187 (307)
T ss_pred EEEEEeCCCCeE
Confidence 777766654433
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.52 E-value=19 Score=42.42 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEE------EEec----------------cCCCCCEEEEEEee-CCCCEEEEEECCCe
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVAC------YIPS----------------IGGTNSVLGLCWLK-KYPSKLVAGSDSGC 506 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~------~~~~----------------~gH~~~V~~L~fsp-~~~~~LaSgS~Dgt 506 (606)
.++++.|. .+.|.||+...-.... .+.. ..|. |.-+.... .+...|+.|.+||.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHt--IN~i~v~~lg~~EVLl~c~DdG~ 125 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHT--INFIKVGDLGGEEVLLLCTDDGD 125 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCce--eeEEEecccCCeeEEEEEecCCe
Confidence 45666655 7889999965422211 0000 1222 44443322 23467999999999
Q ss_pred EEEEeCCCCC----------CCcccccCCcceEEeecCCCeEEEEEc--cCCCEEEEEeCCCcEEEEECCCC--ceeEEE
Q 035500 507 VRLFDLNHIP----------PKVADARGNSSVATYYDFEQLTSVHVN--STDDQFLASGYSKNVALYDINTE--KPLQLF 572 (606)
Q Consensus 507 IklWDl~~~~----------~~~~~l~~~~~i~t~~~~~~V~sV~~s--p~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l 572 (606)
|.+|....-- ..........|-..+.....++++++| ...+++|+++....|.+|-.... +....-
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9999763210 000000112345566667789999999 77789999988888888866542 221111
Q ss_pred cCCCCCCeEEEEEeCCC--C---eEEEEEeCCCeEE
Q 035500 573 TDMHREPINVAKFSHHS--P---LCLLLLHLTTMSR 603 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g--~---~LLaTgS~DgtIR 603 (606)
...|...|.+|+|-++. + ..+++++=.|.+-
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW 241 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence 22366789999998765 1 2466666666543
No 426
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.10 E-value=13 Score=41.87 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=69.9
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE------------------ECCCeEEEEeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG------------------SDSGCVRLFDLN 513 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg------------------S~DgtIklWDl~ 513 (606)
.++.++.+|.+...|.++|+.+....... ..++..| ..++.+ ..+|.+.-.|..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE-----QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec-----cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 68888999999999999999987654321 1112222 222221 134555555655
Q ss_pred CCCCCcccccCCcc--eEEeecCCCe--EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSS--VATYYDFEQL--TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~--i~t~~~~~~V--~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+++. .|..... ........+. ..+. -.++.++.++.||.++.+|..+|+.+..++.+..-...-+.+..++
T Consensus 375 tG~~---~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g 449 (488)
T cd00216 375 TGKV---VWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNG 449 (488)
T ss_pred CCcE---eeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCC
Confidence 5321 0100000 0000000111 1121 1467888899999999999999999888774222222224444455
Q ss_pred CeEEEE
Q 035500 590 PLCLLL 595 (606)
Q Consensus 590 ~~LLaT 595 (606)
...+++
T Consensus 450 ~~yv~~ 455 (488)
T cd00216 450 KQYVGV 455 (488)
T ss_pred EEEEEE
Confidence 533433
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.41 E-value=2.6 Score=31.41 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=26.8
Q ss_pred eeEEEEcCCCC--CEEEEEeCCCcEEEEECCC
Q 035500 440 PRQFEYNPSNP--SLMAFGTLDGEVIVINHEN 469 (606)
Q Consensus 440 V~slafsP~dg--~~LaSGs~DGtVrIWDi~t 469 (606)
++++.|+|..+ ++||.+-.-|.|.|+|+++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998666 7999999999999999985
No 428
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=85.32 E-value=2.3 Score=43.00 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=72.3
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee
Q 035500 453 MAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY 532 (606)
Q Consensus 453 LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~ 532 (606)
+..-+.||.|+=+++...+..-... ..|. +..--+.....++.|+.||.|.+|..+...... -. ...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~-------d~-~~s 99 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS-------DR-VCS 99 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhh----cceeecccCceEEeecccceEEEecCCccchHH-------Hh-hhc
Confidence 3344667777777765432211000 0111 111122344679999999999999887421100 00 011
Q ss_pred cCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCeEEEEEeCCCCeEEEEE--eCCCe
Q 035500 533 DFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR-EPINVAKFSHHSPLCLLLL--HLTTM 601 (606)
Q Consensus 533 ~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~-~~I~sV~fsP~g~~LLaTg--S~Dgt 601 (606)
...+| +.|.--.++.+..+++.||.|+.|.+.-.+.+-... .|. ..+.....+..++. ++.+ |.|..
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~-i~~a~~S~d~~ 170 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEF-LKIADTSHDRV 170 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCce-EEeeccccchh
Confidence 12232 333333345688889999999999998877766665 466 44444444444442 3444 44443
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.24 E-value=41 Score=37.38 Aligned_cols=157 Identities=8% Similarity=0.092 Sum_probs=86.0
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccCCCCCEEEEEEee---CCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIGGTNSVLGLCWLK---KYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~gH~~~V~~L~fsp---~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.-++++.+.|++||..|.+|||+...+... ..+--..-..+|.++..-+ ..+...++.=.-..+.+|.+......
T Consensus 31 ~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 31 DNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred cCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 334456789999999999999998653321 1111112346788887642 22223333344556777776432111
Q ss_pred cccccCCcceEEeecC--CCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDF--EQLTSVHVNSTD-----DQFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~--~~V~sV~~sp~g-----~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~ 590 (606)
...-..-.....+.|+ .....+++-|-| ..+..-|.||++.+|+-+.---.+.++. -..+ .+.|.|.-.
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCC
Confidence 0000000112233343 224444443332 5788889999999999775443333331 1223 367777666
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
. |++++.+..+.|
T Consensus 188 s-fvt~sss~~l~~ 200 (418)
T PF14727_consen 188 S-FVTASSSWTLEC 200 (418)
T ss_pred E-EEEecCceeEEE
Confidence 4 777777777765
No 430
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.55 E-value=1.8 Score=50.91 Aligned_cols=73 Identities=8% Similarity=0.147 Sum_probs=61.4
Q ss_pred cceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 526 SSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 526 ~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.++++|+.+ ...++++|+-..++++.|+-.|.|++|+..+|....... +|.++|+-+.-+.+|..++.++++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeecccc
Confidence 456667654 448999999999999999999999999999998887777 8999999999999998766665544
No 431
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.55 E-value=0.39 Score=51.91 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=69.1
Q ss_pred ccceEEEccCccccchHHHhhccCC-CceeEEEccccchhcc-ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVG-SSCHVLILRATNIRKL-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.++...+|.++. ..-+..+.-.= ..=+.|++++|.|+.+ .-.+.+++|..|.+. .|.|+.++.. ..-.|+|+.|
T Consensus 116 ~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~-~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKL-LSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhh-hhhhhhhhhe
Confidence 467777776633 22222221111 1345699999999999 688899999999999 8999999752 1189999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhh
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.+.+|++..+-..+ ..+..|.+|.
T Consensus 192 ~ls~N~i~~l~~~~---~~~~~L~~l~ 215 (394)
T COG4886 192 DLSGNKISDLPPEI---ELLSALEELD 215 (394)
T ss_pred eccCCccccCchhh---hhhhhhhhhh
Confidence 99999999993333 2333377776
No 432
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.41 E-value=0.58 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.5
Q ss_pred cccccEEecccCCCcccccccccc
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFS 169 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~ 169 (606)
+.+|++|.|+ +|.|+.|+++.|.
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLS-NNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHcc
Confidence 4678999999 8899999988886
No 433
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.41 E-value=0.58 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.5
Q ss_pred cccccEEecccCCCcccccccccc
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFS 169 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~ 169 (606)
+.+|++|.|+ +|.|+.|+++.|.
T Consensus 1 L~~L~~L~L~-~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLS-NNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECC-CCcCCcCCHHHcc
Confidence 4678999999 8899999988886
No 434
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=84.34 E-value=45 Score=36.74 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=84.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC------CCCCEEEEEEee---CCC----CEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG------GTNSVLGLCWLK---KYP----SKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g------H~~~V~~L~fsp---~~~----~~LaSgS~Dgt 506 (606)
|++++.| +-.++|.|..+|.+.|.|++....+..-.... ....|+++.|.- .++ -.++.|...|.
T Consensus 89 vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 89 VTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp EEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred EeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 7888886 55699999999999999998666655433323 345688898862 121 35888999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEE-eecCCCeEEEE-EccC-----------------C---CEEEEEeCCCcEEEEECC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVAT-YYDFEQLTSVH-VNST-----------------D---DQFLASGYSKNVALYDIN 564 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t-~~~~~~V~sV~-~sp~-----------------g---~~LaSgs~Dg~I~IWDlr 564 (606)
+.+|.+.-... ..+. -..... ..+.++|..|. ++.+ + +-++....+..++++..-
T Consensus 167 v~~fkIlp~~~--g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 167 VLTFKILPSSN--GRFS-VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp EEEEEEEE-GG--G-EE-EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred EEEEEEecCCC--CceE-EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99998752110 0000 001111 12334444333 2211 1 223333445789999998
Q ss_pred CCceeEEEcCCCCCCeEEEEEe----CCCCeEEEEEeCCCeEEE
Q 035500 565 TEKPLQLFTDMHREPINVAKFS----HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 t~k~v~~l~~gH~~~I~sV~fs----P~g~~LLaTgS~DgtIRc 604 (606)
+.+..+.... ..-....+.+- ..+...|++-..+|.|++
T Consensus 244 ~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 244 KSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp ---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 8776554432 22333344453 224456788888998886
No 435
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.76 E-value=28 Score=36.20 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=47.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEE-EEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGL-CWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L-~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
-+++++.|...|.+++.+.++|.....+...+ .|.+- ...+ ++..+..|+.|++...-|.++
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~vk~~a~~d~-~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh---hhccceEEcC-CCceEEEecCCCcEEEecccc
Confidence 56789999999999999999998877665322 12211 2233 567999999999999999988
No 436
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.53 E-value=17 Score=39.44 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=70.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCC--------E-EEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS--------V-LGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~--------V-~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.++.+++++.+|.+.-+|.++|+.+......+.... + .++.. .+..++.++.+|.+.-+|..+++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~-- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEV-- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCC--
Confidence 345788888899999999999999887654331110 0 01111 235677888999999999887532
Q ss_pred ccccCCcceEEeecCCCeEE-EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 520 ADARGNSSVATYYDFEQLTS-VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.. .......+.+ ... .+..++.++.++.+.-+|.++|+.+...+
T Consensus 143 -------~W-~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 143 -------AW-QTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred -------cc-cccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 11 1111111111 111 14567777888999999999999877665
No 437
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=83.30 E-value=0.31 Score=56.36 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=78.8
Q ss_pred ccceEEEccCccccc-hHHHhhccCCCceeEEEccccchhcccccc-ccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRN-DNLLDLCQVGSSCHVLILRATNIRKLNMVG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
+-||-+||+-|-|-+ +|||+|++- +.|||+.|++|++.-++ .=-+|..|+|. ||-++.+.- -+.+-+|.-|
T Consensus 187 ~ale~LnLshNk~~~v~~Lr~l~~L----khLDlsyN~L~~vp~l~~~gc~L~~L~lr-nN~l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVDNLRRLPKL----KHLDLSYNCLRHVPQLSMVGCKLQLLNLR-NNALTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhhhhHHHHhcccc----cccccccchhccccccchhhhhheeeeec-ccHHHhhhh--HHhhhhhhcc
Confidence 346788999888765 799999864 57999999999988555 22359999999 999999975 7889999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+..|-+.+- ..+..|.-|.+|++|-+|+=+
T Consensus 260 DlsyNll~~h-seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNLLSEH-SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhhhhcc-hhhhHHHHHHHHHHHhhcCCc
Confidence 9999988876 333445555666666666544
No 438
>PHA02713 hypothetical protein; Provisional
Probab=82.63 E-value=17 Score=41.69 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC------------------
Q 035500 449 NPSLMAFGTLDG-----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG------------------ 505 (606)
Q Consensus 449 dg~~LaSGs~DG-----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg------------------ 505 (606)
++.+.+.||.+| +|..||..++.....-+. .+...-.+++.. ++...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m-p~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM-PIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC-CcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 667778888765 478899887655432121 111111122222 445667777653
Q ss_pred -----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC------CcEEEEECCC-Cc--eeEE
Q 035500 506 -----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS------KNVALYDINT-EK--PLQL 571 (606)
Q Consensus 506 -----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D------g~I~IWDlrt-~k--~v~~ 571 (606)
++..||..+. .|....+...-... ...+.+ ++.+.+.||.+ ..+..||.++ .+ .+..
T Consensus 428 ~~~~~~ve~YDP~td-----~W~~v~~m~~~r~~--~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 428 THSSNKVIRYDTVNN-----IWETLPNFWTGTIR--PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ccccceEEEECCCCC-----eEeecCCCCccccc--CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 3555665542 11111111111111 111222 46677777754 2467899997 42 2334
Q ss_pred EcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 572 FTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 572 l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
++. .......+.+ +..++++||.|+
T Consensus 499 m~~-~r~~~~~~~~---~~~iyv~Gg~~~ 523 (557)
T PHA02713 499 TES-RLSALHTILH---DNTIMMLHCYES 523 (557)
T ss_pred cCc-ccccceeEEE---CCEEEEEeeecc
Confidence 442 2233333333 456899999887
No 439
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.40 E-value=27 Score=35.97 Aligned_cols=109 Identities=9% Similarity=0.145 Sum_probs=63.1
Q ss_pred eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeC
Q 035500 477 PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 477 ~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
...+-...+.+|+|+|+++.+++.....+.|.-.+... .-++.+ .+....-+|++..++.++++.-.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence 33355667999999996656666667777777666543 223333 34556888888765656665556
Q ss_pred CCcEEEEECCCCc------eeEEEc--C--CCCCCeEEEEEeCCCCeEEEEE
Q 035500 555 SKNVALYDINTEK------PLQLFT--D--MHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 555 Dg~I~IWDlrt~k------~v~~l~--~--gH~~~I~sV~fsP~g~~LLaTg 596 (606)
++.+.+.++.... .+..+. . .+...+-.++|+|.+..++++-
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 8999999884321 112222 1 1445688999999988777653
No 440
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=82.18 E-value=0.39 Score=46.69 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=50.3
Q ss_pred cccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEccccccc
Q 035500 111 TLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIV 185 (606)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 185 (606)
+.++-.+.+| |+|+|++|+|.+|. -+..+++|..||+. -|++.-++.+ |..+|-|+.|.++-|+..
T Consensus 49 ppnia~l~nl-------evln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprg-fgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 49 PPNIAELKNL-------EVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRG-FGSFPALEVLDLTYNNLN 115 (264)
T ss_pred CCcHHHhhhh-------hhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccc-cCCCchhhhhhccccccc
Confidence 4555555554 78888889888887 55678888888888 7777777766 888888888888877655
No 441
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.13 E-value=0.57 Score=52.89 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=56.1
Q ss_pred EEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 130 LILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
|||++|++.-|-.---+--|..|++. ||.+++++++.. -.|.|+-|.-..|.|.+|-.-+..|.+|.
T Consensus 126 l~ls~NqlS~lp~~lC~lpLkvli~s-NNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr 192 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLPLKVLIVS-NNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhccchhhcCChhhhcCcceeEEEe-cCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHH
Confidence 89999999988765567889999999 999999999988 99999999999999998855444444433
No 442
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=0.36 Score=50.13 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceecccCCCCC
Q 035500 142 MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGP 216 (606)
Q Consensus 142 ~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~ 216 (606)
..-+.+-|+.|-|. =|+|+++.. |.-+.+|..|.+-.|.|..| ..++=|..||+|+.|-+--=+||...|+
T Consensus 36 ic~kMp~lEVLsLS-vNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLS-VNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHHhcccceeEEee-ccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHhhccCCcccccch
Confidence 33445556666666 666666644 55566666666666666655 4444455566666665555566655554
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.85 E-value=35 Score=38.98 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
.+.+++.++.||.++.+|.++|+.+..++.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 356777888899999999999999988874
No 444
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.81 E-value=0.79 Score=53.92 Aligned_cols=102 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred hccceEEEccCcc-ccchHHHhhccCCCceeEEEccccchhcc---ccccccccccEEecccCCCcccccccccccCccc
Q 035500 99 DQKLRVVDLSNIT-LRNDNLLDLCQVGSSCHVLILRATNIRKL---NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 99 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
.|+||..|+++.. |.++..+..++.=.+=+.|.+++-.+-+- .....|++|..|.+. .+.|+.+ .+=+.++||
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-GTNISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-CCCccCc--HHHhccccH
Confidence 4555555555432 34444445555444444555554444333 234456666666666 6666665 445556666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
..|+|++=.+.+ |..+-+|..|..|+-|.
T Consensus 198 q~L~mrnLe~e~-~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 198 QVLSMRNLEFES-YQDLIDLFNLKKLRVLD 226 (699)
T ss_pred HHHhccCCCCCc-hhhHHHHhcccCCCeee
Confidence 666665555553 44445555555555554
No 445
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.63 E-value=7.6 Score=41.67 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEE--EEeccC--------CCCCEEEEEEeeCCCCEEEEE--E-----CCCe--EEE
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVAC--YIPSIG--------GTNSVLGLCWLKKYPSKLVAG--S-----DSGC--VRL 509 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~g--------H~~~V~~L~fsp~~~~~LaSg--S-----~Dgt--Ikl 509 (606)
.+..++.-+.+|.|+--|+....... .++... -.+.-.-+++++..+.+++.- + .|+. |-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 45567778888888888876544322 221110 011122345554332222211 1 2333 334
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEE-eCCCcEEEEECCCCceeEEEc
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLAS-GYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSg-s~Dg~I~IWDlrt~k~v~~l~ 573 (606)
+|..+ .+.+..+.-..++.+|+++.+.+ +|++. ..++.+.+||..+|+.++.++
T Consensus 274 ~D~~t----------~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 274 YDLKT----------HKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EETTT----------TEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EECCC----------CeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 44444 45666666666788999998874 66554 467999999999999998887
No 446
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.62 E-value=0.55 Score=48.17 Aligned_cols=77 Identities=27% Similarity=0.395 Sum_probs=52.7
Q ss_pred cceEEEccCccc----cchHHHhhccCCCceeEEEccccchhcccc---ccccccccEEecccCCCcccc---ccccccc
Q 035500 101 KLRVVDLSNITL----RNDNLLDLCQVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASL---HEDCFSC 170 (606)
Q Consensus 101 ~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~---~~~~~~~ 170 (606)
||+..+|+||.+ |=+.+-+-+ .+-.+|+|+.|.|+-+.. ..++.+|.+|.|- ++++|.+ .+.-|.-
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~---P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~-n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKA---PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF-NCSVTNLDDYREKVFLL 141 (260)
T ss_pred hhhhhcccCCcccccccceehhhhC---CceeEEeecCCccccccccchhhhhcchhhhhcc-cCCccccccHHHHHHHH
Confidence 888999988844 444444433 667789999998885554 4467777788777 5565554 4466777
Q ss_pred CccccEEEccc
Q 035500 171 MPYLMCLSMCE 181 (606)
Q Consensus 171 ~p~l~~l~~~~ 181 (606)
||.|+.|+=|.
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 77777777654
No 447
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.02 E-value=54 Score=35.09 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=83.4
Q ss_pred eeEEEEcCCCCCEEEEE--eCC---CcEEEEECCCCceEEEEecc--CCCCCEEEEEEe-eCCCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFG--TLD---GEVIVINHENGNVACYIPSI--GGTNSVLGLCWL-KKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSG--s~D---GtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fs-p~~~~~LaSgS~DgtIklWD 511 (606)
+..+.|.+ ++..++.. +.+ ..+.+.|..++......... +.-..-....|. +++...+.....||--+|+-
T Consensus 186 l~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 186 LTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred cccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 67788999 66633332 222 34566788776654433211 212222355554 55556666666888777776
Q ss_pred CCCCCCCcccccCCcceEEee-cCCCeEE-EEEccCCC-EEEEEeCC----CcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 512 LNHIPPKVADARGNSSVATYY-DFEQLTS-VHVNSTDD-QFLASGYS----KNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~-~~~~V~s-V~~sp~g~-~LaSgs~D----g~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
+..... ....+. +.-.|.. +.|.++++ +.+++..+ ..+..-++..+..+..+.. ....-..+.
T Consensus 265 ~~~~~~---------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~~~~~~~~ 334 (353)
T PF00930_consen 265 YDLDGG---------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-EDGDHYSAS 334 (353)
T ss_dssp EETTSS---------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-TSSTTEEEE
T ss_pred Eccccc---------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CCCCceEEE
Confidence 655321 122233 3344644 67788776 44455543 3555556662344455552 222226999
Q ss_pred EeCCCCeEEEEEeCCC
Q 035500 585 FSHHSPLCLLLLHLTT 600 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dg 600 (606)
|+|++++++.+++.-+
T Consensus 335 ~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 335 FSPDGKYYVDTYSGPD 350 (353)
T ss_dssp E-TTSSEEEEEEESSS
T ss_pred ECCCCCEEEEEEcCCC
Confidence 9999999988888654
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.76 E-value=43 Score=39.76 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC-CCCCcccccCCc--ceEEee---------cCCCeEEEEEccCC---C
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH-IPPKVADARGNS--SVATYY---------DFEQLTSVHVNSTD---D 547 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~-~~~~~~~l~~~~--~i~t~~---------~~~~V~sV~~sp~g---~ 547 (606)
-.|..|..+| .+.+++-.|..| |.|-.+.. ......-..++. ..+++. ....|..+.|||.+ .
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3577888888 567777777655 44444432 110000000011 111221 12348999999984 6
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 035500 548 QFLASGYSKNVALYDINTE 566 (606)
Q Consensus 548 ~LaSgs~Dg~I~IWDlrt~ 566 (606)
.++.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999854
No 449
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.13 E-value=60 Score=34.28 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=81.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcE-EEEECCCCceEEEEe------ccCCCCCEEEEEEeeCCCCEEEEEE-----CCCeEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEV-IVINHENGNVACYIP------SIGGTNSVLGLCWLKKYPSKLVAGS-----DSGCVRL 509 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtV-rIWDi~tg~~v~~~~------~~gH~~~V~~L~fsp~~~~~LaSgS-----~DgtIkl 509 (606)
.+++||..+.-++.+-.=|+. .+||....+...++. +.||. +|+| ++.+|++.- .-|.|-+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~-dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSP-DGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCC-CCcEEEeecCCCCCCCceEEE
Confidence 467899888888887777765 578988766544333 23443 5787 567776653 2368999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeC------C------------CcEEEEECCCCceeE
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGY------S------------KNVALYDINTEKPLQ 570 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~------D------------g~I~IWDlrt~k~v~ 570 (606)
||.+.. ...+-.+..++- -..+.|.++|.+++.+.. | -.+.+.|..+|+.+.
T Consensus 145 Yd~r~~---------fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 145 YDAREG---------FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred Eecccc---------cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 999863 233444544332 567889999988776643 1 123344555555432
Q ss_pred EEcC---CCCCCeEEEEEeCCCC
Q 035500 571 LFTD---MHREPINVAKFSHHSP 590 (606)
Q Consensus 571 ~l~~---gH~~~I~sV~fsP~g~ 590 (606)
.... .+...|..++..++|.
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCc
Confidence 2211 1445677777777776
No 450
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.00 E-value=13 Score=39.05 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=66.2
Q ss_pred EEEEEEeeCCCCEEEEEECCCeE-EEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCC-----C
Q 035500 485 VLGLCWLKKYPSKLVAGSDSGCV-RLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYS-----K 556 (606)
Q Consensus 485 V~~L~fsp~~~~~LaSgS~DgtI-klWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~D-----g 556 (606)
..+++|+|..+.-++-+=.=|+. .++|.+.... ++..- +...-.-.=.|||+|.++++.-.| |
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~---------pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rG 140 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE---------PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRG 140 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcC---------cEEEecccCceeecccccCCCCcEEEeecCCCCCCCc
Confidence 34567777665566666555554 3688877432 22111 111112223489999999888555 8
Q ss_pred cEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 557 NVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 557 ~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.|-+||.+.+ +.+-++. .|.-.-..+.|.++|..+++..+
T Consensus 141 ViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 141 VIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred eEEEEecccccceecccc-cCCcCcceeEEecCCcEEEEeCC
Confidence 8999999965 3466777 67777789999999997555443
No 451
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=79.84 E-value=28 Score=39.17 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=79.4
Q ss_pred EEcCCCCCEEEEEeCCC------------------cEEEEECCCCceEEEEeccCCCC----CEEEEEEee---CCC---
Q 035500 444 EYNPSNPSLMAFGTLDG------------------EVIVINHENGNVACYIPSIGGTN----SVLGLCWLK---KYP--- 495 (606)
Q Consensus 444 afsP~dg~~LaSGs~DG------------------tVrIWDi~tg~~v~~~~~~gH~~----~V~~L~fsp---~~~--- 495 (606)
++.+ .+..++.++.|+ .|.-+|..+|+....++...|.. ........+ .++
T Consensus 223 a~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 223 TYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 4444 456777887665 79999999999998776543321 100011111 112
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE------------------eCCCc
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS------------------GYSKN 557 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg------------------s~Dg~ 557 (606)
..++.++.+|.+...|..+++. +=..... ...++..| +.++.+ ..+|.
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~----------~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKL----------ISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred EEEEEECCCceEEEEECCCCcE----------eeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2577888999999999988532 1111100 11122233 222222 24578
Q ss_pred EEEEECCCCceeEEEcCC-CC------CCe--EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 558 VALYDINTEKPLQLFTDM-HR------EPI--NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 558 I~IWDlrt~k~v~~l~~g-H~------~~I--~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.-.|..+|+.+.....+ +. ... ..+.. .+. ++..++.|+.+.+
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~a 420 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRA 420 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEE
Confidence 889999999988777632 10 111 11111 233 4666778888775
No 452
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.35 E-value=0.52 Score=51.24 Aligned_cols=138 Identities=22% Similarity=0.254 Sum_probs=92.8
Q ss_pred HHHhhhcCcCccceeeeccCCCcccchh------HHHHHHHH------------hhccceEEEccCccccchHHHhhccC
Q 035500 62 IDVFTEMDSFDIEAVDILSKRPCFLKEE------YIMSLMHA------------IDQKLRVVDLSNITLRNDNLLDLCQV 123 (606)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~ 123 (606)
.|||.+..+.=|..|+.--.+-|.+-.. .+-.+.-. .=|||--.+|++|.+ .+-=.|+++-
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~e~~~l 457 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL-NDLPEEMGSL 457 (565)
T ss_pred HHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh-hhcchhhhhh
Confidence 4677777766677777644444444322 22222222 236888888888533 2333355554
Q ss_pred CCceeEEEccccchhcccccc-ccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhh
Q 035500 124 GSSCHVLILRATNIRKLNMVG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLME 202 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~ 202 (606)
-. =|.||+|.|+||-+..+- +...|+|+.-. +|.|.+++++=-..|-+|++|.+.+|-+--. =..|-++.+|++
T Consensus 458 v~-Lq~LnlS~NrFr~lP~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I---Pp~LgnmtnL~h 532 (565)
T KOG0472|consen 458 VR-LQTLNLSFNRFRMLPECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI---PPILGNMTNLRH 532 (565)
T ss_pred hh-hheecccccccccchHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcceeccCCCchhhC---ChhhccccceeE
Confidence 44 789999999999887655 44456666666 8999999998788999999999999866543 355677888888
Q ss_pred hhh
Q 035500 203 LRF 205 (606)
Q Consensus 203 l~~ 205 (606)
|.+
T Consensus 533 LeL 535 (565)
T KOG0472|consen 533 LEL 535 (565)
T ss_pred EEe
Confidence 873
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.87 E-value=11 Score=38.05 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=48.0
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe------ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 035500 494 YPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY------YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 494 ~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~------~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
.+.+++..+.+|.+++||+...+....+.. -.|+... .....|..+.++.+|.-+++-+ +|..+.||..-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 457899999999999999998654333211 1111111 2345589999998887666665 478899987754
No 454
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.71 E-value=28 Score=40.36 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=56.3
Q ss_pred CCEEEEEEeeCCCCEEEEEE------CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-
Q 035500 483 NSVLGLCWLKKYPSKLVAGS------DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS- 555 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D- 555 (606)
..+...+.+|+ +..++..- .|+.-.+|-...+.. ..++ ..+. ....-.|+|+|..+++.+..
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~l--t~g~-~~t~PsWspDG~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQV--LEGH-SLTRPSWSLDADAVWVVVDGN 418 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCc-------ceee--ecCC-CCCCceECCCCCceEEEecCc
Confidence 45778889984 45544433 244445554432211 1111 2222 37778899998866666432
Q ss_pred -----------CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 556 -----------KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 556 -----------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+.+.+.++..++... . ..+.|..+.|+|+|..+.+..
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS--R--VPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh--c--cCCCcCeEEECCCCCEEEEEE
Confidence 233333444443322 1 246799999999999877665
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.37 E-value=19 Score=42.77 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=51.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCC---------Cce---EEEEe------ccCCCCCEEEEEEeeCC--CCEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHEN---------GNV---ACYIP------SIGGTNSVLGLCWLKKY--PSKL 498 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~t---------g~~---v~~~~------~~gH~~~V~~L~fsp~~--~~~L 498 (606)
.|..+.++| +|.++|..|..|.+.+.=.+. |+. ..++. ...+...|..+.|+|.. +..|
T Consensus 86 ~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 377888999 999999999877444322211 111 11111 11345678999999963 5778
Q ss_pred EEEECCCeEEEEeCCCC
Q 035500 499 VAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~ 515 (606)
+.=..|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999764
No 456
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=78.04 E-value=0.37 Score=46.86 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=42.0
Q ss_pred EEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcC
Q 035500 130 LILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKL 197 (606)
Q Consensus 130 ~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~ 197 (606)
|+++-|++..|. .+|.|+-|+.|.|.|+|-=..--.+=|-.|.-|..|.+.+|-..=|-.++..|.+|
T Consensus 84 lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 84 LNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNL 152 (264)
T ss_pred eecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence 555555555444 56777777777777766444333344666777777777777666666555555553
No 457
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.85 E-value=43 Score=40.10 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=71.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC------CEEEEEEeeC---------------CCCEEEEEECCCeE
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN------SVLGLCWLKK---------------YPSKLVAGSDSGCV 507 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~------~V~~L~fsp~---------------~~~~LaSgS~DgtI 507 (606)
.++.+..++.++.|.-.|..+|+.+..+....... ...++.+... ....++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 35688888889999999999999988765422111 1223443211 23478888899998
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCe-------------EEEEEccC--CCEEEEEeC----------CCcEEEEE
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQL-------------TSVHVNST--DDQFLASGY----------SKNVALYD 562 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V-------------~sV~~sp~--g~~LaSgs~----------Dg~I~IWD 562 (606)
.-.|..+++. +-.+..+..| ..+.-.|- ++.++.|+. +|.|+-+|
T Consensus 273 iALDA~TGk~----------~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 273 IALDADTGKL----------CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEECCCCCE----------EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 8889887532 2222111111 01111221 456666643 58899999
Q ss_pred CCCCceeEEEc
Q 035500 563 INTEKPLQLFT 573 (606)
Q Consensus 563 lrt~k~v~~l~ 573 (606)
.++|+.+..+.
T Consensus 343 a~TGkl~W~~~ 353 (764)
T TIGR03074 343 VNTGALVWAWD 353 (764)
T ss_pred CCCCcEeeEEe
Confidence 99999987775
No 458
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.18 E-value=16 Score=41.21 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=59.6
Q ss_pred EEeCCCcEEEEECCC-Cc-eEEEEeccCCC----CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 455 FGTLDGEVIVINHEN-GN-VACYIPSIGGT----NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 455 SGs~DGtVrIWDi~t-g~-~v~~~~~~gH~----~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
.|=+|..|.-||++- +. .+...+ +|. ..-.| +.....++++.||.+|.|++||--. . ..-
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q--~kqy~~k~nFsc--~aTT~sG~IvvgS~~GdIRLYdri~-~---------~AK 464 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQ--SKQYSTKNNFSC--FATTESGYIVVGSLKGDIRLYDRIG-R---------RAK 464 (644)
T ss_pred EeecCCceEEecccccCcceeeeee--ccccccccccce--eeecCCceEEEeecCCcEEeehhhh-h---------hhh
Confidence 566788899999763 22 111111 221 12222 3334567999999999999999732 1 122
Q ss_pred EEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 035500 529 ATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDIN 564 (606)
Q Consensus 529 ~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr 564 (606)
..+.+ ..+|..|..+.+|.+++..+. .++.+-|+.
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred hcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 23333 566999999999998876664 566666655
No 459
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=76.76 E-value=17 Score=42.76 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC-------C----c-------eEEEEeccCCCCCEEEEEEe--eCCCCEEEEEECCCeEE
Q 035500 449 NPSLMAFGTLDGEVIVINHEN-------G----N-------VACYIPSIGGTNSVLGLCWL--KKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~t-------g----~-------~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS~DgtIk 508 (606)
+...|+.+.+||.|.+|.+++ . + ....+.. ....++++++++ . ..+++|.++.-..|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEEEEecCCceEE
Confidence 557999999999999997521 1 0 0011221 224579999998 4 446677777777888
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD---D---QFLASGYSKNVALYDI 563 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g---~---~LaSgs~Dg~I~IWDl 563 (606)
||-+...... ........+...|.+|+|-++. . ++++++-.|.+-+|++
T Consensus 191 VFaf~l~~~r------~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDER------FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccc------cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8876653110 0111122345568899987763 2 7888888999999888
No 460
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=76.64 E-value=1.5 Score=27.52 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred cccEEecccCCCccccccccccc
Q 035500 148 HLNTLSLDFCSSLASLHEDCFSC 170 (606)
Q Consensus 148 ~l~tl~l~~~~~~~~~~~~~~~~ 170 (606)
+|+.|+|. .|.|+.|+++ |..
T Consensus 1 ~L~~Ldls-~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLS-GNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEET-SSEESEEGTT-TTT
T ss_pred CccEEECC-CCcCEeCChh-hcC
Confidence 47788888 5588888877 554
No 461
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.93 E-value=1.7 Score=29.03 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.4
Q ss_pred hccceEEEccCccccchHHHhhcc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQ 122 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~ 122 (606)
|.+|+++||++|.+|.+-..-|++
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHH
Confidence 678999999999999887776654
No 462
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=74.77 E-value=61 Score=37.29 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=67.1
Q ss_pred eeEEEEcCC----CCCEEEEEeCCCcEEEEECC-----CCceEEEEec-cCCCCCE--EEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPS----NPSLMAFGTLDGEVIVINHE-----NGNVACYIPS-IGGTNSV--LGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~----dg~~LaSGs~DGtVrIWDi~-----tg~~v~~~~~-~gH~~~V--~~L~fsp~~~~~LaSgS~DgtI 507 (606)
|..+.|.|. .+.++|.-.. .-|.||-+. +++..-.... .+..-+| .+..|+|...-+-+-...|-.|
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHk-khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHK-KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeecCcccCCCCceEEEecc-ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 667789983 4467766654 559999864 2333222111 0111122 3678999654333334455433
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCC
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTE 566 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~ 566 (606)
+.+++... ..-....+..+-|.+.+|.++|+.++.+ |..=.-+|||-...
T Consensus 138 -~~sV~~d~--------srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 138 -LPSVHCDS--------SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred -eeeeeeCC--------ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 56666532 1112244556779999999999755544 55566789987644
No 463
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=73.90 E-value=26 Score=38.80 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=32.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~ 477 (606)
+.+++.+| ++++.|+...=|+|.++|+.++..+..++
T Consensus 310 ~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 310 GESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred EEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 66889999 78898888888999999999988887665
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.78 E-value=1.3e+02 Score=31.99 Aligned_cols=110 Identities=6% Similarity=-0.008 Sum_probs=56.5
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCc
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+-.+.+..+.-++ ++.+++.++.-....-||--.. ....+. ....|.++.|.|++.+.+.+ ..|.
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-----------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~ 208 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-----------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ 208 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-----------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-----------cceEEccCccceehhceecCCCCEEEEe-CCcE
Confidence 4456788888776 5566666655555567875541 122222 34559999999998876655 7788
Q ss_pred EEEEE-CCCCceeEE--EcC-CCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 558 VALYD-INTEKPLQL--FTD-MHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 558 I~IWD-lrt~k~v~~--l~~-gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|++=| ....+.-.. .+. .-.-.+..++|.+.+. +.|+|+.....+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~~ 257 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLLV 257 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT-EEE
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCCccEEE
Confidence 88877 222222111 111 1123478999998866 677776655443
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=73.34 E-value=9.1 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCEEEEEEeeCCC--CEEEEEECCCeEEEEeCCC
Q 035500 483 NSVLGLCWLKKYP--SKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 483 ~~V~~L~fsp~~~--~~LaSgS~DgtIklWDl~~ 514 (606)
++|.++.|+|... .+|+-+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 6888888889999999995
No 466
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.30 E-value=1.3e+02 Score=31.90 Aligned_cols=146 Identities=6% Similarity=-0.054 Sum_probs=72.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
++.+..++ ++.++++++.-....-||.....-...- ..-...|..+.|.|+ +.+ ...+..|.|++=+.... .
T Consensus 147 ~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~-~~l-w~~~~Gg~~~~s~~~~~---~ 218 (302)
T PF14870_consen 147 INDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPD-GNL-WMLARGGQIQFSDDPDD---G 218 (302)
T ss_dssp EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TT-S-E-EEEETTTEEEEEE-TTE---E
T ss_pred eEeEEECC-CCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCC-CCE-EEEeCCcEEEEccCCCC---c
Confidence 56667787 9988888866555567886533333222 244678999999984 444 34558898888772221 0
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC--CCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g--H~~~I~sV~fsP~g~~LLaTg 596 (606)
..+. .++.... ....+.+++|.+++..+++|+.. + .+.....|+.-+.-+.+ -...++.|.|.+..+ -++-|
T Consensus 219 ~~w~--~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG 293 (302)
T PF14870_consen 219 ETWS--EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLG 293 (302)
T ss_dssp EEE-----B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-
T ss_pred cccc--cccCCcccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEEC
Confidence 1111 0111111 12238899999988888877753 3 34455566664444321 245688898865543 35555
Q ss_pred eC
Q 035500 597 HL 598 (606)
Q Consensus 597 S~ 598 (606)
..
T Consensus 294 ~~ 295 (302)
T PF14870_consen 294 QD 295 (302)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 467
>PHA02713 hypothetical protein; Provisional
Probab=72.14 E-value=39 Score=38.86 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-----eEEEEeCCC
Q 035500 449 NPSLMAFGTLD------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-----CVRLFDLNH 514 (606)
Q Consensus 449 dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-----tIklWDl~~ 514 (606)
++.+.+.||.+ .+|..||..++.....-+. .....-.+++.. ++...+.||.++ ++..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCC
Confidence 56677788754 3477889877654322111 111112233332 445667777664 477788775
No 468
>PRK15386 type III secretion protein GogB; Provisional
Probab=72.07 E-value=3.2 Score=45.81 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=22.9
Q ss_pred EEccccchhccccccccc-cccEEecccCCCcccccccccccCccccEEEcccc
Q 035500 130 LILRATNIRKLNMVGRFM-HLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCET 182 (606)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~-~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~ 182 (606)
|+++++.+..|. .|+ .|++|++..|+.++++++. ..++|++|.+.++
T Consensus 57 L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~C 104 (426)
T PRK15386 57 LYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGS---IPEGLEKLTVCHC 104 (426)
T ss_pred EEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCch---hhhhhhheEccCc
Confidence 445444333332 333 3666666555665555532 1245566655554
No 469
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.97 E-value=34 Score=36.45 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=58.1
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce---EEEEe--ccCCCCCEEEEEEeeC---CCCEEEEEECC------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV---ACYIP--SIGGTNSVLGLCWLKK---YPSKLVAGSDS------ 504 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~---v~~~~--~~gH~~~V~~L~fsp~---~~~~LaSgS~D------ 504 (606)
++++|+|.| ++.++++ ...|+|++++ ..+.. +.... .........+++++|. ++...++.+..
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 378999999 7877664 6699999999 44443 22221 1234567899999983 22233333321
Q ss_pred C--eEEEEeCCCCCCCcccccCCcceE-Eeec----CCCeEEEEEccCCCEEEEEeCCC
Q 035500 505 G--CVRLFDLNHIPPKVADARGNSSVA-TYYD----FEQLTSVHVNSTDDQFLASGYSK 556 (606)
Q Consensus 505 g--tIklWDl~~~~~~~~~l~~~~~i~-t~~~----~~~V~sV~~sp~g~~LaSgs~Dg 556 (606)
. .|.-|........ +.....+. .... ......+.|.|+|.+.++.|..+
T Consensus 80 ~~~~v~r~~~~~~~~~---~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGD---LSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCE---EEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred cceeeEEEeccCCccc---cccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 1 3333433332100 00011111 1122 23467799999998777776543
No 470
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=71.69 E-value=4.3 Score=43.50 Aligned_cols=109 Identities=21% Similarity=0.176 Sum_probs=83.0
Q ss_pred ccceEEEccCccc---cchHHHhhccCCCceeEEEccccchhcccc------ccccccccEEecccCCCcccccc----c
Q 035500 100 QKLRVVDLSNITL---RNDNLLDLCQVGSSCHVLILRATNIRKLNM------VGRFMHLNTLSLDFCSSLASLHE----D 166 (606)
Q Consensus 100 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~l~tl~l~~~~~~~~~~~----~ 166 (606)
.||||++-+.|-+ |...+...+|.--.-+.+.+..|.|+-=++ +-+.++|+.|+|. .|-.|.-.. .
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~-DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR-DNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc-cchhhhHHHHHHHH
Confidence 4699999887765 566778888877777889999999987666 5578899999998 777765432 4
Q ss_pred ccccCccccEEEcccccccchh--hhhHHhhc-CCchhhhhhceec
Q 035500 167 CFSCMPYLMCLSMCETRIVNLW--TTTAAISK-LPYLMELRFQMCL 209 (606)
Q Consensus 167 ~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~-~~~l~~l~~~~~~ 209 (606)
-++..|.|+-|.|.++.+.|=- ..+.|+.+ .|+|..|+|++|=
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 5788899999999888877642 23455655 7899999988743
No 471
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=71.63 E-value=1.2e+02 Score=30.69 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=73.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE------------eccCCCCCEEEEE-EeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI------------PSIGGTNSVLGLC-WLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~------------~~~gH~~~V~~L~-fsp~~~~~LaSgS~Dgt 506 (606)
|.+++..| +-+.+++-+ ||+++++++..-...... ........+...+ -....+...+.+....+
T Consensus 38 I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 38 ITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred EEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 77888888 555555554 599999997653332210 0112233444444 11223334444555669
Q ss_pred EEEEeCCCCCCCcccccCC-cceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 035500 507 VRLFDLNHIPPKVADARGN-SSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~-~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l 572 (606)
|.+|........ . ...+.+.....+.+++|. ++.++.|.. +...+.|+.++.....+
T Consensus 116 i~i~~~~~~~~~------f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 116 ILIYEWNDPRNS------FSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEEECCccc------ccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEe
Confidence 999888763210 2 345566667889999998 667777765 45788899977665444
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.63 E-value=60 Score=38.90 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=70.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEec-cCCCCCE----------EEEEEeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPS-IGGTNSV----------LGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~-~gH~~~V----------~~L~fsp~~~~~LaSgS~Dgt 506 (606)
...++|+|.+...+|.-...|...||++..+... ..+.. ..+.+.+ ..+.|.+ +...|+.++.. .
T Consensus 148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~-~ 225 (765)
T PF10214_consen 148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRS-K 225 (765)
T ss_pred cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCC-c
Confidence 4568899999999999999999999999221111 11111 1112222 3678876 44566666654 5
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNST--DDQFLASGYSKNVALYDINTE 566 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~ 566 (606)
+.++|+...... ..+........|.+++-+|. +..|+-.+ ..|...|+...
T Consensus 226 l~~~d~~~~~~~-------~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQT-------EYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCcc-------chhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 778888874321 11222333455888888877 34444443 45777777763
No 473
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=70.63 E-value=87 Score=34.54 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=37.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEee
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLK 492 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp 492 (606)
+..+++|| +++++|.-..+|.+.|....-.+....+.. +-......+.|+.
T Consensus 219 i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-~~~~~p~~~~WCG 269 (410)
T PF04841_consen 219 IIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDT-DSKSPPKQMAWCG 269 (410)
T ss_pred eEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeec-CcCCCCcEEEEEC
Confidence 77899999 999999999999999998765555544443 2234556777774
No 474
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=70.44 E-value=6.9 Score=41.93 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=53.8
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC------
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH------ 576 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH------ 576 (606)
.+.+.+||+.+.. +..+. ....+....|+|+|+.++-... +.|.+++..+++..+.-..|-
T Consensus 22 ~~~y~i~d~~~~~-----------~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIETGE-----------ITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTTTE-----------EEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEES
T ss_pred ceeEEEEecCCCc-----------eEECcCCccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcC
Confidence 3568889998832 11122 1456888999999998888764 789999988775543222220
Q ss_pred ----------CCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 577 ----------REPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 577 ----------~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
-+.-..+-|+|+|++++...-.+..|
T Consensus 90 ~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred ccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 11235688999999866655554443
No 475
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.91 E-value=69 Score=35.13 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEcCCCCCEEEE---EeCCCcE-EEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-----CCeEEEEeC
Q 035500 443 FEYNPSNPSLMAF---GTLDGEV-IVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-----SGCVRLFDL 512 (606)
Q Consensus 443 lafsP~dg~~LaS---Gs~DGtV-rIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-----DgtIklWDl 512 (606)
+.|+|.++.+|+. |..|..= |||-+.+ |.....+.-..-...+.-=-|.| ++..+.--+. +..|.-.|.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-CCCEEEEEeecCCCCceEEEeeCC
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC----------------cEEEEECCCCceeEEEcCCC
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK----------------NVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg----------------~I~IWDlrt~k~v~~l~~gH 576 (606)
.+ .....+..-......-.+++|.+++-=|.|. .|+++++..++...... |
T Consensus 272 ~t-----------~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~--h 338 (386)
T PF14583_consen 272 DT-----------GERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR--H 338 (386)
T ss_dssp TT-------------EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE---
T ss_pred CC-----------CCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee--c
Q ss_pred -----------CCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 577 -----------REPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 577 -----------~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
...=....|+|++++++.++...|
T Consensus 339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp ------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred cCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
No 476
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=67.51 E-value=1.3e+02 Score=30.85 Aligned_cols=102 Identities=14% Similarity=-0.024 Sum_probs=59.3
Q ss_pred CEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEE-
Q 035500 484 SVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALY- 561 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IW- 561 (606)
.+...+++++ +..++... .++.-.+|-..... ..........+..-+|.+++...+....+...+++
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~~----------~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAGG----------PVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCCC----------cceeeccCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 5778889984 45554443 33334444444321 11222122367788899998777776666666766
Q ss_pred ECCCCce-eEEEcCCCCC-CeEEEEEeCCCCeEEEEE
Q 035500 562 DINTEKP-LQLFTDMHRE-PINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 562 Dlrt~k~-v~~l~~gH~~-~I~sV~fsP~g~~LLaTg 596 (606)
+...+.. .......-.. .|..++++|+|..+.+..
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 3333332 2222211122 899999999999866655
No 477
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.42 E-value=7.9 Score=34.28 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=15.0
Q ss_pred ccEEecccCCCcccccccccccCccccEEEcccc
Q 035500 149 LNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCET 182 (606)
Q Consensus 149 l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~ 182 (606)
|.++.+. +.+..+++.+|..+++|..+.+.++
T Consensus 60 l~~i~~~--~~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 60 LESITFP--NNLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp -EEEEET--STT-EE-TTTTTT-TTECEEEETTT
T ss_pred ccccccc--ccccccccccccccccccccccCcc
Confidence 3444443 3555565666666666666665443
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.36 E-value=45 Score=37.84 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=21.9
Q ss_pred eceeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLDGEVIVIN 466 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~DGtVrIWD 466 (606)
+.|..+..+| .|..+|-+|.+|.+.++=
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEc
Confidence 3467777999 899999999999766543
No 479
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.08 E-value=1.7e+02 Score=35.81 Aligned_cols=146 Identities=11% Similarity=0.137 Sum_probs=88.6
Q ss_pred CceeeceeEEEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 434 GNKRVRPRQFEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 434 G~~~~rV~slafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
-++...+.++.|....+.+++.|+ ..|.|.||..+.+..+..+.-..-++.|.++.-- ++.++ ++-
T Consensus 771 ~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkll--A~I 846 (1096)
T KOG1897|consen 771 NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLL--AGI 846 (1096)
T ss_pred cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEE--Eec
Confidence 344445666778873367788776 3477777777663333333222335667777654 33444 345
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC--CceeEEEcCCCCCCeE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINT--EKPLQLFTDMHREPIN 581 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt--~k~v~~l~~gH~~~I~ 581 (606)
..+|++++..+.+ .....-.+..++..+...-.++.++.|.-=+.+.+--.+. |.....-..-|....+
T Consensus 847 n~~vrLye~t~~~---------eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 847 NQSVRLYEWTTER---------ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred CcEEEEEEccccc---------eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 6789999998831 1111223456677777777789999997766666654443 3354444444677788
Q ss_pred EEEEeCCCCeE
Q 035500 582 VAKFSHHSPLC 592 (606)
Q Consensus 582 sV~fsP~g~~L 592 (606)
++.+-.+..++
T Consensus 918 aveil~~d~yl 928 (1096)
T KOG1897|consen 918 AVEILDDDTYL 928 (1096)
T ss_pred eEEEecCceEE
Confidence 88877666543
No 480
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=65.08 E-value=4 Score=49.46 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=23.7
Q ss_pred ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhc
Q 035500 143 VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK 196 (606)
Q Consensus 143 ~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~ 196 (606)
+-.++.|.+|.|..|.+++.+++. =+.+=+|+.|++.+|.|.+|...+..|.+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKK 619 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHh
Confidence 334444444444444444444432 22344444455555555544444444333
No 481
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=64.93 E-value=2.4e+02 Score=31.64 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCCEEEEE--e----CCCcEEEEECCCCceEEEEeccC-CCCCEEEEEEeeCCCCEEEEEE----------
Q 035500 440 PRQFEYNPSNPSLMAFG--T----LDGEVIVINHENGNVACYIPSIG-GTNSVLGLCWLKKYPSKLVAGS---------- 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSG--s----~DGtVrIWDi~tg~~v~~~~~~g-H~~~V~~L~fsp~~~~~LaSgS---------- 502 (606)
+.++.--| +|++++|+ + .-|-+.+.|.++.+.....+... ....-+.+-|.| ..+.++|.+
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccC
Confidence 44455566 77788773 2 23567788888777766555322 234456777777 446666643
Q ss_pred ----------CCCeEEEEeCCCCCCCcccccCCcceEEeecC--C-CeEEEEEcc--CCCE-EEEEeCCCcE-EEEECCC
Q 035500 503 ----------DSGCVRLFDLNHIPPKVADARGNSSVATYYDF--E-QLTSVHVNS--TDDQ-FLASGYSKNV-ALYDINT 565 (606)
Q Consensus 503 ----------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~-~V~sV~~sp--~g~~-LaSgs~Dg~I-~IWDlrt 565 (606)
.-.++.+||+.. .+.++++.-. . ....|.|.. ...+ |+.+--..+| ++|-...
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~----------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWST----------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTT----------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred CChhHhhcccccCeEEEEECCC----------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 356899999998 5667777743 2 245666654 4443 3222223333 4443333
Q ss_pred C----ceeEEEcCC----------------CCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 566 E----KPLQLFTDM----------------HREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 566 ~----k~v~~l~~g----------------H~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
+ +.+..++.. -..-|+.|..|.+.++|.+++=.+|.||
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvr 337 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVR 337 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEE
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEE
Confidence 3 223333310 0245799999999999999998888887
No 482
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=64.68 E-value=4.9 Score=35.64 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=21.0
Q ss_pred cccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
..+|+++.+. +.++.|++.+|..+++|+.|.+-++ +.++.+ .+....++|.++.|
T Consensus 11 ~~~l~~i~~~--~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 11 CSNLESITFP--NTIKKIGENAFSNCTSLKSINFPNN-LTSIGD--NAFSNCKSLESITF 65 (129)
T ss_dssp -TT--EEEET--ST--EE-TTTTTT-TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEE
T ss_pred CCCCCEEEEC--CCeeEeChhhccccccccccccccc-ccccce--eeeecccccccccc
Confidence 3445544433 3455555555555555555555443 444432 23444444555544
No 483
>PRK10115 protease 2; Provisional
Probab=64.54 E-value=3e+02 Score=32.62 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred eeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-----CeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-----GCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-----gtIkl 509 (606)
+..+.|+| ++++||.+.+. -++++-|+.+|..+... .... -..++|.+++...+++.-.+ ..|..
T Consensus 129 l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 129 LGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--LDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--ccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 66788999 88888875432 36888899888643221 1222 25699998554455554332 35666
Q ss_pred EeCCCCCCCcccccCCcceEEeecC-CCeE-EEEEccCCCEEEEEe---CCCcEEEEECC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDF-EQLT-SVHVNSTDDQFLASG---YSKNVALYDIN 564 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~-~~V~-sV~~sp~g~~LaSgs---~Dg~I~IWDlr 564 (606)
|++.+... .....+... .... .+..+.++.+++..+ .++.+.+|+..
T Consensus 204 h~lgt~~~--------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPAS--------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChh--------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 77776421 222334332 2222 333333666444332 23678888853
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=63.91 E-value=2e+02 Score=30.47 Aligned_cols=151 Identities=14% Similarity=0.162 Sum_probs=80.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCc------EEEEECCC--C-----ceEEEEeccCCCCCEE--------EEEEeeCCCCEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGE------VIVINHEN--G-----NVACYIPSIGGTNSVL--------GLCWLKKYPSKL 498 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGt------VrIWDi~t--g-----~~v~~~~~~gH~~~V~--------~L~fsp~~~~~L 498 (606)
.+.+.+.| ++..+++-+++|. +.-+++.. + .......+..-.+... +|++.+ ++..+
T Consensus 22 lSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~~ 99 (326)
T PF13449_consen 22 LSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSFW 99 (326)
T ss_pred EeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCEE
Confidence 56788998 5557777788887 55555443 1 1111112222222222 778843 66666
Q ss_pred EEEECC------CeEEEEeCCCCCCCcccccCCcce-------EEeecCCCeEEEEEccCCCEEEEEeC-----CC--c-
Q 035500 499 VAGSDS------GCVRLFDLNHIPPKVADARGNSSV-------ATYYDFEQLTSVHVNSTDDQFLASGY-----SK--N- 557 (606)
Q Consensus 499 aSgS~D------gtIklWDl~~~~~~~~~l~~~~~i-------~t~~~~~~V~sV~~sp~g~~LaSgs~-----Dg--~- 557 (606)
+|.=.+ ..|.-++... .. .....-.... .........-+++++|+|..++++.. |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G-~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDG-RV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCC-cc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 666556 6777777552 11 1111000111 12223455899999999996555533 22 1
Q ss_pred ------EEE--EECCC-CceeEEEcCC--------CCCCeEEEEEeCCCCeEEE
Q 035500 558 ------VAL--YDINT-EKPLQLFTDM--------HREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 558 ------I~I--WDlrt-~k~v~~l~~g--------H~~~I~sV~fsP~g~~LLa 594 (606)
++| ||..+ +++...+... ....|..+.+-+++..++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 455 45544 3333322211 3467888999999885544
No 485
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.94 E-value=4.3 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=17.9
Q ss_pred hccceEEEccCccccchHHHhhcc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQ 122 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~ 122 (606)
|.+|+.++|+++.++.+.++.|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 568999999999999998887764
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.12 E-value=30 Score=39.35 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=44.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCcccc--------------cCCcceE--E-eecCCCeEEEEEcc----CCCEEEEE
Q 035500 494 YPSKLVAGSDSGCVRLFDLNHIPPKVADA--------------RGNSSVA--T-YYDFEQLTSVHVNS----TDDQFLAS 552 (606)
Q Consensus 494 ~~~~LaSgS~DgtIklWDl~~~~~~~~~l--------------~~~~~i~--t-~~~~~~V~sV~~sp----~g~~LaSg 552 (606)
++..++.+..||.+..............+ .+..+.. . ......+.++++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 45677788889988877766521100000 0000000 0 00123366677776 56899999
Q ss_pred eCCCcEEEEECCCCceeEEE
Q 035500 553 GYSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 553 s~Dg~I~IWDlrt~k~v~~l 572 (606)
+.|+++|+||+.+++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999985544
No 487
>PRK15386 type III secretion protein GogB; Provisional
Probab=61.72 E-value=12 Score=41.42 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=48.0
Q ss_pred HHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccc-cchhccc-cccccccccEEecccCCCcccccccc
Q 035500 90 YIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRA-TNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDC 167 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~ 167 (606)
-|.+-|+.. .+++.++++++. |..|-+-=.+-+.|++++ +.+..+. .+ ...|..|.|..|..|+++++
T Consensus 43 ~a~~r~~~~-~~l~~L~Is~c~-----L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-- 112 (426)
T PRK15386 43 EITPQIEEA-RASGRLYIKDCD-----IESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-- 112 (426)
T ss_pred HHHHHHHHh-cCCCEEEeCCCC-----CcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc--
Confidence 366667777 558899998852 344433223456677764 3333332 12 24788999987777776653
Q ss_pred cccCccccEEEccccc
Q 035500 168 FSCMPYLMCLSMCETR 183 (606)
Q Consensus 168 ~~~~p~l~~l~~~~~~ 183 (606)
.|..|.+..+.
T Consensus 113 -----sLe~L~L~~n~ 123 (426)
T PRK15386 113 -----SVRSLEIKGSA 123 (426)
T ss_pred -----ccceEEeCCCC
Confidence 46666665443
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=60.93 E-value=1.4e+02 Score=33.53 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE--Ee-c--cCCCCCEEEEEEeeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY--IP-S--IGGTNSVLGLCWLKK 493 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~--~~-~--~gH~~~V~~L~fsp~ 493 (606)
++.|+|.| +++++++--..|+|++++..++..... +. . ....+...+|+++|+
T Consensus 32 Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 32 PWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred ceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 78899999 887777665579999998665433211 11 1 113567899999985
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.81 E-value=41 Score=38.29 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCcEEEEECCC----CceEEEEeccC--------------------CCCCEEEEEEee---CCCCEEEEE
Q 035500 449 NPSLMAFGTLDGEVIVINHEN----GNVACYIPSIG--------------------GTNSVLGLCWLK---KYPSKLVAG 501 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~g--------------------H~~~V~~L~fsp---~~~~~LaSg 501 (606)
++..++.+..||.+-...... +.......... -.+.+..++... .+..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567888888999888877653 22221111000 123455555554 245789999
Q ss_pred ECCCeEEEEeCCCCC
Q 035500 502 SDSGCVRLFDLNHIP 516 (606)
Q Consensus 502 S~DgtIklWDl~~~~ 516 (606)
+.|+++|+||+.+..
T Consensus 237 ~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQ 251 (547)
T ss_dssp ETTSEEEEEETTTTC
T ss_pred eCCCeEEEEECCCCe
Confidence 999999999999854
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.65 E-value=2.1e+02 Score=29.03 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=38.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc-----------CCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 538 TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT-----------DMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~-----------~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+-+.|- +|...|-.-.+..|...|..+|+.+..+. ..|.+-.+.+++.|++..+++||-
T Consensus 179 NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 179 NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 344443 45555555555666666777776654433 125567889999999987888873
No 491
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=56.87 E-value=6.3 Score=23.25 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=6.9
Q ss_pred ccccEEEcccccccc
Q 035500 172 PYLMCLSMCETRIVN 186 (606)
Q Consensus 172 p~l~~l~~~~~~~~~ 186 (606)
|+|+.|++.+|++..
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 456666666665543
No 492
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.46 E-value=49 Score=33.29 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=39.0
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeEEE-------cC------CCCCCeEEEEEeCCCCeEEEEE
Q 035500 542 VNSTDDQFLASGYSKNVALYDINTEKPLQLF-------TD------MHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 542 ~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l-------~~------gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+...++++++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-++...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 3456889999999999999999998663221 10 2457788888888776544333
No 493
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.36 E-value=1.5e+02 Score=33.05 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEE---EECCC-C----ceEEEEec-cCCC--CCEEEEEEeeC----------CCCEEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIV---INHEN-G----NVACYIPS-IGGT--NSVLGLCWLKK----------YPSKLVA 500 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrI---WDi~t-g----~~v~~~~~-~gH~--~~V~~L~fsp~----------~~~~LaS 500 (606)
.++.+| ++++||.|..+.-|.+ |+... + ........ ..+. ..|+++.|.|- +...++.
T Consensus 6 ~isls~-~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSP-DGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecC-CCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 467888 9999999988887766 65421 2 11111111 1222 57888888764 1345888
Q ss_pred EECCCeEEEEeCCC
Q 035500 501 GSDSGCVRLFDLNH 514 (606)
Q Consensus 501 gS~DgtIklWDl~~ 514 (606)
|-.+|.|++|.-..
T Consensus 85 G~ssG~vrfyte~G 98 (415)
T PF14655_consen 85 GTSSGYVRFYTENG 98 (415)
T ss_pred EecccEEEEEeccc
Confidence 99999999998765
No 494
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.47 E-value=7.7 Score=38.77 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=58.7
Q ss_pred CCCceeEEEccccchhc--cccccccccccEEecccCCCccccc-ccccccCccccEEEcc-cccccchhhhhHHhhcCC
Q 035500 123 VGSSCHVLILRATNIRK--LNMVGRFMHLNTLSLDFCSSLASLH-EDCFSCMPYLMCLSMC-ETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--l~~~~~~~~l~tl~l~~~~~~~~~~-~~~~~~~p~l~~l~~~-~~~~~~l~~~~~~l~~~~ 198 (606)
.-.-=+++|=+++.|-. |+.+..+..|.+|.|.+|..+--.. +-...-.|+|+.|.+. ..||+.- -+|-|-||+
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lk 176 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLK 176 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhh
Confidence 33444678888888876 4477888899999988776543221 0112367999999998 5677753 448899999
Q ss_pred chhhhhhce
Q 035500 199 YLMELRFQM 207 (606)
Q Consensus 199 ~l~~l~~~~ 207 (606)
+|+.|.|-.
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 999998654
No 495
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=53.76 E-value=3.4 Score=43.07 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=56.0
Q ss_pred hccceEEEccCccccchHHHhh----------ccCCC-ceeEEEcc-ccchhccccccccccccEEecccCCCccccccc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDL----------CQVGS-SCHVLILR-ATNIRKLNMVGRFMHLNTLSLDFCSSLASLHED 166 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~----------~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~ 166 (606)
-+-|.|+|||||.|-+.-=|-| ..-|+ .|--=+=. .+=++..+ --.|++||+|-++|+..=..+-++
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~-e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN-EKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh-hhcCCCccccccchhhhcCceeee
Confidence 4668899999998866543322 11121 22000000 11123332 225899999999999875544444
Q ss_pred cc------ccCccccEEEcccccccchhhh
Q 035500 167 CF------SCMPYLMCLSMCETRIVNLWTT 190 (606)
Q Consensus 167 ~~------~~~p~l~~l~~~~~~~~~l~~~ 190 (606)
.| ..||-|..|-..+||+..+-..
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~E~~d~ 321 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIKELADF 321 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcchhHHHH
Confidence 32 4899999999999999988333
No 496
>PHA03098 kelch-like protein; Provisional
Probab=53.40 E-value=1.6e+02 Score=33.26 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCchhhhh---hhhhhhcCCCCCceeEEEeeccccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHh
Q 035500 22 QPNSSVLSW---FSEAKIQNPNNEKCSILVYLDQLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAI 98 (606)
Q Consensus 22 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (606)
.-|-.||++ +|+|-....-.+ -+|-|. + |..-+-.++.=|-|.+| .++.+-+..|+.++
T Consensus 24 ~~Hk~vLaa~S~yF~~mf~~~~~~---~~i~l~---~-~~~~~~~~l~y~Ytg~~-----------~i~~~~~~~ll~~A 85 (534)
T PHA03098 24 KVHKIILSSSSEYFKKMFKNNFKE---NEINLN---I-DYDSFNEVIKYIYTGKI-----------NITSNNVKDILSIA 85 (534)
T ss_pred EeHHHHHHhhhHHHHHHHhCCCCC---ceEEec---C-CHHHHHHHHHHhcCCce-----------EEcHHHHHHHHHHH
Confidence 345667765 677755543322 233332 2 44455555555666554 24556689999988
Q ss_pred hccceEEEccCccccchHHHhhccCCC
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGS 125 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 125 (606)
+. |+.+.|+++|..-+
T Consensus 86 ~~-----------l~~~~l~~~C~~~l 101 (534)
T PHA03098 86 NY-----------LIIDFLINLCINYI 101 (534)
T ss_pred HH-----------hCcHHHHHHHHHHH
Confidence 74 55555555555443
No 497
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=52.36 E-value=6.4 Score=43.01 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=58.3
Q ss_pred HHhhccCCCceeEEEccc-------cchhccccccccccccEEecccCCCccccccccc-ccCccccEEEccccc-ccch
Q 035500 117 LLDLCQVGSSCHVLILRA-------TNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCF-SCMPYLMCLSMCETR-IVNL 187 (606)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~-~~~p~l~~l~~~~~~-~~~l 187 (606)
+..+.+.....+.|+++. .....+.+.....+|+.|+|.++..|+.+.---. ...|+|++|.+.+.. |++.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 667777777888888865 2222233555678899999998887776642222 237888887654433 4433
Q ss_pred hhhhHHhhcCCchhhhhhceec
Q 035500 188 WTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 188 ~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.-.+-..++|+|++|.+..|.
T Consensus 286 -gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 286 -GLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred -HHHHHHHhcCcccEEeeecCc
Confidence 222334458889988877655
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.19 E-value=3.2e+02 Score=28.73 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=53.8
Q ss_pred cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE------CCCeEEEEeCCCCCCCcccccCCcceEEeec-
Q 035500 461 EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS------DSGCVRLFDLNHIPPKVADARGNSSVATYYD- 533 (606)
Q Consensus 461 tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~- 533 (606)
.|.+||..+.+....-. +-.+.|+++.|.. +...+++|. ....+..||.... .+..+..
T Consensus 17 ~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~-----------~w~~~~~~ 82 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGN--GISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQ-----------TWSSLGGG 82 (281)
T ss_pred EEEEEECCCCEeecCCC--CceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCC-----------eeeecCCc
Confidence 48899988777655322 4567899999984 445666663 4557788998873 1222222
Q ss_pred -----CCCeEEEEEccC-C-CEEEEEe-C--CCcEEEEECC
Q 035500 534 -----FEQLTSVHVNST-D-DQFLASG-Y--SKNVALYDIN 564 (606)
Q Consensus 534 -----~~~V~sV~~sp~-g-~~LaSgs-~--Dg~I~IWDlr 564 (606)
..+|..+.+... + +.+++|. . +..+..||=.
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 255766666433 2 3554443 2 2456667544
No 499
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.84 E-value=2.2e+02 Score=26.74 Aligned_cols=105 Identities=10% Similarity=0.142 Sum_probs=60.1
Q ss_pred EEEEEeCCCcEEEEECCCCc--------eEEEEeccCCCCCEEEEEEeeC----CCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 452 LMAFGTLDGEVIVINHENGN--------VACYIPSIGGTNSVLGLCWLKK----YPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~--------~v~~~~~~gH~~~V~~L~fsp~----~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
-|+.++.-|+|.|++..... .+..+ .-...|++|+--+- ....|+-|+ ..++..||+..+.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L---Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~--- 84 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFL---NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS--- 84 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEE---ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc---
Confidence 67788888999999866432 22333 23456787765442 234566665 4578899999842
Q ss_pred ccccCCcceEEeecCCCeEEEEEccC----CCEEEEEeCCCcEEEEECCCCceeEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNST----DDQFLASGYSKNVALYDINTEKPLQL 571 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~----g~~LaSgs~Dg~I~IWDlrt~k~v~~ 571 (606)
.+..-.-.+.|+++.+-.- +++++.|| +..|.-+|..-.+...+
T Consensus 85 -------d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 -------DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred -------hhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 2222223455776666322 23444444 45666666654444433
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=50.80 E-value=1.3e+02 Score=36.14 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC-ccccc--CCcceEEe--e--cCCCeEEEEEccCCCEEEEEeCC
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK-VADAR--GNSSVATY--Y--DFEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~-~~~l~--~~~~i~t~--~--~~~~V~sV~~sp~g~~LaSgs~D 555 (606)
.+...++|+|.+...||.....|...|||+...... ...+. .... -++ . ..+....|.|.++.+.++.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 357789999988889999999999999999322111 01110 0000 111 1 1234568889888777777766
Q ss_pred CcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCC
Q 035500 556 KNVALYDINTEKPLQ-LFTDMHREPINVAKFSHH 588 (606)
Q Consensus 556 g~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~ 588 (606)
..+.++|+++..... .........|..++-+|.
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 678999999876633 232234578888888877
Done!