Query 035500
Match_columns 606
No_of_seqs 375 out of 2228
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 99.9 4E-23 1.4E-27 217.0 24.9 151 440-604 130-284 (344)
2 2ynn_A Coatomer subunit beta'; 99.9 1.6E-22 5.3E-27 206.8 23.9 150 440-604 16-167 (304)
3 4gqb_B Methylosome protein 50; 99.9 3.2E-22 1.1E-26 210.1 23.0 153 440-604 172-326 (344)
4 3ow8_A WD repeat-containing pr 99.9 4.1E-22 1.4E-26 206.3 23.4 149 440-604 167-316 (321)
5 1got_B GT-beta; complex (GTP-b 99.9 6E-22 2E-26 205.7 24.7 149 440-604 187-338 (340)
6 4e54_B DNA damage-binding prot 99.9 1.6E-22 5.4E-27 217.2 18.1 153 439-604 121-277 (435)
7 1vyh_C Platelet-activating fac 99.9 8.5E-22 2.9E-26 210.6 22.5 149 440-604 111-260 (410)
8 2ynn_A Coatomer subunit beta'; 99.9 2.4E-21 8.1E-26 198.0 24.4 150 440-604 100-254 (304)
9 4ery_A WD repeat-containing pr 99.9 7.7E-21 2.6E-25 193.2 25.4 149 440-604 26-175 (312)
10 3fm0_A Protein CIAO1; WDR39,SG 99.9 3.6E-21 1.2E-25 200.5 23.1 154 440-604 64-220 (345)
11 4g56_B MGC81050 protein; prote 99.9 2.2E-21 7.4E-26 203.8 21.2 151 440-604 142-296 (357)
12 2pbi_B Guanine nucleotide-bind 99.9 8.7E-21 3E-25 198.7 24.8 150 440-604 199-352 (354)
13 2hes_X YDR267CP; beta-propelle 99.9 8.8E-21 3E-25 196.3 24.1 154 440-604 61-225 (330)
14 3fm0_A Protein CIAO1; WDR39,SG 99.9 5.4E-21 1.9E-25 199.1 22.3 153 440-604 19-176 (345)
15 1erj_A Transcriptional repress 99.9 1.2E-20 4.3E-25 199.9 25.0 150 440-604 126-282 (393)
16 3frx_A Guanine nucleotide-bind 99.9 1.4E-20 4.9E-25 193.8 24.5 148 440-604 68-222 (319)
17 3ow8_A WD repeat-containing pr 99.9 1.2E-20 4.2E-25 195.2 22.9 149 440-604 125-274 (321)
18 1vyh_C Platelet-activating fac 99.9 1.5E-20 5E-25 201.0 23.8 150 440-604 237-406 (410)
19 2pbi_B Guanine nucleotide-bind 99.9 2.8E-20 9.7E-25 194.8 25.4 151 440-604 67-266 (354)
20 2pm7_B Protein transport prote 99.9 2E-20 6.8E-25 190.5 23.5 156 440-604 56-233 (297)
21 4g56_B MGC81050 protein; prote 99.9 6.7E-21 2.3E-25 200.1 20.5 153 440-604 184-338 (357)
22 2pm7_B Protein transport prote 99.9 2.5E-20 8.7E-25 189.7 23.5 153 440-604 12-184 (297)
23 3iz6_a 40S ribosomal protein R 99.9 1.4E-20 4.7E-25 198.7 21.2 151 440-604 208-370 (380)
24 4ery_A WD repeat-containing pr 99.9 9.7E-20 3.3E-24 185.1 25.2 150 440-604 68-218 (312)
25 1got_B GT-beta; complex (GTP-b 99.8 1.1E-19 3.7E-24 188.7 25.4 150 440-604 100-252 (340)
26 2xzm_R RACK1; ribosome, transl 99.8 7.2E-20 2.5E-24 190.0 24.0 147 440-604 79-239 (343)
27 2hes_X YDR267CP; beta-propelle 99.8 8.9E-20 3E-24 188.8 24.2 156 440-604 17-179 (330)
28 3iz6_a 40S ribosomal protein R 99.8 2.6E-20 9E-25 196.5 19.7 159 440-604 69-275 (380)
29 3f3f_A Nucleoporin SEH1; struc 99.8 1.2E-19 4.1E-24 182.5 23.5 162 440-604 14-244 (351)
30 3ei3_B DNA damage-binding prot 99.8 8.8E-20 3E-24 190.5 23.1 151 440-604 76-231 (383)
31 3frx_A Guanine nucleotide-bind 99.8 1.2E-19 4.1E-24 186.9 23.4 150 440-604 20-180 (319)
32 4h5i_A Guanine nucleotide-exch 99.8 7.4E-20 2.5E-24 192.9 21.9 155 440-604 179-338 (365)
33 3vl1_A 26S proteasome regulato 99.8 5.1E-20 1.7E-24 193.8 20.5 151 440-604 142-317 (420)
34 4ggc_A P55CDC, cell division c 99.8 6.4E-19 2.2E-23 177.3 26.4 161 440-604 70-310 (318)
35 1nr0_A Actin interacting prote 99.8 1.8E-19 6.3E-24 202.5 24.7 153 440-604 62-265 (611)
36 1erj_A Transcriptional repress 99.8 3.5E-19 1.2E-23 188.7 24.7 163 440-604 209-384 (393)
37 3bg1_A Protein SEC13 homolog; 99.8 2.1E-20 7.1E-25 192.3 14.7 155 440-604 16-193 (316)
38 1nr0_A Actin interacting prote 99.8 2.3E-19 8E-24 201.6 24.4 151 440-604 150-350 (611)
39 4gga_A P55CDC, cell division c 99.8 7E-19 2.4E-23 187.6 25.8 161 440-604 150-390 (420)
40 2xzm_R RACK1; ribosome, transl 99.8 5.5E-19 1.9E-23 183.3 24.2 154 440-604 24-198 (343)
41 3f3f_A Nucleoporin SEH1; struc 99.8 2.4E-19 8.3E-24 180.3 20.5 161 440-604 60-332 (351)
42 2ymu_A WD-40 repeat protein; u 99.8 4.7E-19 1.6E-23 194.5 23.4 146 440-604 429-575 (577)
43 2aq5_A Coronin-1A; WD40 repeat 99.8 4.4E-19 1.5E-23 187.3 22.2 152 440-604 84-249 (402)
44 4e54_B DNA damage-binding prot 99.8 1.3E-19 4.4E-24 194.4 17.7 152 440-604 167-322 (435)
45 4a11_B DNA excision repair pro 99.8 7.7E-19 2.6E-23 182.3 22.9 154 440-604 46-213 (408)
46 2j04_B YDR362CP, TAU91; beta p 99.8 9.3E-20 3.2E-24 202.9 16.3 148 440-604 269-423 (524)
47 3dwl_C Actin-related protein 2 99.8 6.8E-20 2.3E-24 190.3 13.9 153 440-604 14-172 (377)
48 3jrp_A Fusion protein of prote 99.8 1.8E-18 6.2E-23 177.6 24.1 156 440-604 58-235 (379)
49 3dm0_A Maltose-binding peripla 99.8 8E-19 2.7E-23 199.6 23.4 149 440-604 433-587 (694)
50 3jrp_A Fusion protein of prote 99.8 1.4E-18 4.8E-23 178.5 23.0 154 440-604 14-186 (379)
51 4aez_A CDC20, WD repeat-contai 99.8 1.8E-18 6.2E-23 183.0 24.3 149 440-604 137-288 (401)
52 3bg1_A Protein SEC13 homolog; 99.8 7.1E-20 2.4E-24 188.3 13.1 157 440-604 60-242 (316)
53 3dwl_C Actin-related protein 2 99.8 1.9E-19 6.5E-24 187.0 16.3 153 440-604 58-231 (377)
54 2xyi_A Probable histone-bindin 99.8 1.5E-18 5.1E-23 186.1 23.5 153 440-604 234-405 (430)
55 2xyi_A Probable histone-bindin 99.8 1.7E-18 5.7E-23 185.7 23.3 157 440-604 184-348 (430)
56 4aow_A Guanine nucleotide-bind 99.8 2.7E-18 9.3E-23 174.3 23.6 162 440-604 41-241 (340)
57 2pm9_A Protein WEB1, protein t 99.8 6.4E-19 2.2E-23 184.4 19.1 155 440-604 168-332 (416)
58 3zwl_B Eukaryotic translation 99.8 4.2E-18 1.4E-22 173.9 24.4 149 440-604 178-341 (369)
59 3zwl_B Eukaryotic translation 99.8 4E-18 1.4E-22 174.1 24.1 149 440-604 35-201 (369)
60 3mmy_A MRNA export factor; mRN 99.8 2.6E-18 8.8E-23 175.4 22.5 118 440-569 42-164 (368)
61 3mmy_A MRNA export factor; mRN 99.8 2.5E-18 8.5E-23 175.6 22.1 155 440-601 89-338 (368)
62 1sq9_A Antiviral protein SKI8; 99.8 3E-18 1E-22 178.5 22.9 150 440-604 189-390 (397)
63 4aow_A Guanine nucleotide-bind 99.8 6.2E-18 2.1E-22 171.7 24.7 150 440-604 174-332 (340)
64 3k26_A Polycomb protein EED; W 99.8 9.8E-19 3.3E-23 178.8 18.8 149 440-604 72-255 (366)
65 1k8k_C P40, ARP2/3 complex 41 99.8 1.7E-18 5.7E-23 178.2 20.5 152 440-604 11-168 (372)
66 3k26_A Polycomb protein EED; W 99.8 4.5E-18 1.6E-22 173.8 23.6 153 440-604 21-187 (366)
67 1gxr_A ESG1, transducin-like e 99.8 6.4E-18 2.2E-22 170.7 24.4 148 440-604 144-291 (337)
68 1gxr_A ESG1, transducin-like e 99.8 6.7E-18 2.3E-22 170.5 24.4 150 440-604 100-250 (337)
69 3dw8_B Serine/threonine-protei 99.8 8.1E-19 2.8E-23 185.8 17.9 160 440-604 31-253 (447)
70 1k8k_C P40, ARP2/3 complex 41 99.8 4.6E-18 1.6E-22 174.9 22.9 154 440-604 55-228 (372)
71 2ymu_A WD-40 repeat protein; u 99.8 3.8E-18 1.3E-22 187.3 23.3 146 440-604 388-534 (577)
72 4aez_A CDC20, WD repeat-contai 99.8 2.8E-18 9.6E-23 181.5 21.4 150 440-604 220-375 (401)
73 3ei3_B DNA damage-binding prot 99.8 5.5E-18 1.9E-22 176.9 22.9 150 440-604 121-277 (383)
74 3mkq_A Coatomer beta'-subunit; 99.8 3.9E-18 1.3E-22 195.1 23.3 150 440-604 16-167 (814)
75 3vl1_A 26S proteasome regulato 99.8 2E-18 6.8E-23 181.6 19.0 150 440-604 100-273 (420)
76 3dm0_A Maltose-binding peripla 99.8 5.6E-18 1.9E-22 192.6 23.6 154 440-604 385-545 (694)
77 3i2n_A WD repeat-containing pr 99.8 4.7E-18 1.6E-22 173.5 19.3 155 440-604 167-348 (357)
78 3gre_A Serine/threonine-protei 99.8 4.5E-18 1.5E-22 180.7 19.8 160 440-604 66-240 (437)
79 2aq5_A Coronin-1A; WD40 repeat 99.8 8.4E-18 2.9E-22 177.4 21.5 154 440-604 134-294 (402)
80 1r5m_A SIR4-interacting protei 99.8 7.4E-18 2.5E-22 175.5 20.6 148 440-604 250-420 (425)
81 3sfz_A APAF-1, apoptotic pepti 99.8 1.4E-17 4.6E-22 200.4 25.6 149 440-604 618-769 (1249)
82 2j04_B YDR362CP, TAU91; beta p 99.8 2.8E-18 9.6E-23 191.0 17.8 152 440-604 210-381 (524)
83 2w18_A PALB2, fancn, partner a 99.8 8.5E-18 2.9E-22 177.3 20.1 148 440-604 181-352 (356)
84 3dw8_B Serine/threonine-protei 99.8 5.9E-18 2E-22 179.1 19.2 154 440-604 180-368 (447)
85 2pm9_A Protein WEB1, protein t 99.8 4E-18 1.4E-22 178.4 17.6 160 440-604 70-244 (416)
86 2vdu_B TRNA (guanine-N(7)-)-me 99.8 1.1E-17 3.7E-22 180.0 20.8 155 440-604 105-266 (450)
87 1sq9_A Antiviral protein SKI8; 99.8 8.8E-18 3E-22 175.0 19.0 150 440-604 124-317 (397)
88 3gre_A Serine/threonine-protei 99.8 6.2E-18 2.1E-22 179.7 18.0 152 440-604 217-435 (437)
89 3lrv_A PRE-mRNA-splicing facto 99.8 1.1E-17 3.7E-22 173.3 19.3 151 440-604 128-287 (343)
90 3odt_A Protein DOA1; ubiquitin 99.8 5.1E-17 1.8E-21 162.6 23.1 146 440-604 145-291 (313)
91 4a11_B DNA excision repair pro 99.8 5.9E-17 2E-21 168.0 24.3 161 440-604 144-360 (408)
92 1r5m_A SIR4-interacting protei 99.8 6.2E-17 2.1E-21 168.5 23.7 157 440-604 111-314 (425)
93 2oaj_A Protein SNI1; WD40 repe 99.8 4.4E-18 1.5E-22 200.9 16.7 162 440-604 438-656 (902)
94 2oaj_A Protein SNI1; WD40 repe 99.8 1.6E-17 5.3E-22 196.1 21.2 146 440-602 20-176 (902)
95 3i2n_A WD repeat-containing pr 99.8 2E-17 7E-22 168.7 18.4 153 440-604 114-286 (357)
96 3jro_A Fusion protein of prote 99.7 4.3E-17 1.5E-21 188.1 23.0 156 440-604 56-233 (753)
97 3lrv_A PRE-mRNA-splicing facto 99.7 2.7E-17 9.1E-22 170.3 19.0 148 440-604 79-239 (343)
98 3v7d_B Cell division control p 99.7 1.2E-16 4.2E-21 170.9 24.3 157 440-604 165-336 (464)
99 1pgu_A Actin interacting prote 99.7 4.6E-17 1.6E-21 178.9 20.8 147 440-604 449-609 (615)
100 1yfq_A Cell cycle arrest prote 99.7 1.9E-17 6.6E-22 168.5 16.5 146 440-604 14-174 (342)
101 4ggc_A P55CDC, cell division c 99.7 2.2E-16 7.6E-21 158.6 23.5 147 440-604 28-176 (318)
102 3odt_A Protein DOA1; ubiquitin 99.7 1.7E-16 5.7E-21 158.9 22.3 148 440-604 21-169 (313)
103 3jro_A Fusion protein of prote 99.7 3.9E-17 1.4E-21 188.5 20.3 154 440-604 12-184 (753)
104 4gq1_A NUP37; propeller, trans 99.7 2E-17 6.8E-22 175.6 16.4 150 445-604 96-281 (393)
105 4gq1_A NUP37; propeller, trans 99.7 2.9E-17 9.8E-22 174.4 17.4 161 440-604 139-385 (393)
106 2j04_A TAU60, YPL007P, hypothe 99.7 2.7E-17 9.1E-22 183.5 16.7 145 440-604 18-206 (588)
107 3mkq_A Coatomer beta'-subunit; 99.7 1.3E-16 4.6E-21 182.3 22.3 150 440-604 100-254 (814)
108 2vdu_B TRNA (guanine-N(7)-)-me 99.7 2.2E-16 7.4E-21 169.8 22.4 153 440-604 152-334 (450)
109 4h5i_A Guanine nucleotide-exch 99.7 1E-16 3.4E-21 168.9 18.5 148 440-604 136-295 (365)
110 1yfq_A Cell cycle arrest prote 99.7 2.3E-16 8E-21 160.5 19.9 151 440-601 153-315 (342)
111 3v7d_B Cell division control p 99.7 3.4E-16 1.2E-20 167.5 21.7 146 440-604 313-458 (464)
112 2j04_A TAU60, YPL007P, hypothe 99.7 1.9E-16 6.6E-21 176.6 20.3 149 440-604 88-249 (588)
113 4gga_A P55CDC, cell division c 99.7 6.1E-16 2.1E-20 164.8 23.2 147 440-604 108-256 (420)
114 2oit_A Nucleoporin 214KDA; NH2 99.7 5.4E-17 1.8E-21 176.0 15.3 150 440-601 95-264 (434)
115 3vu4_A KMHSV2; beta-propeller 99.7 4.8E-16 1.6E-20 162.7 20.8 160 440-604 61-266 (355)
116 3vu4_A KMHSV2; beta-propeller 99.7 7.5E-16 2.6E-20 161.2 20.8 146 442-604 142-331 (355)
117 3sfz_A APAF-1, apoptotic pepti 99.7 9.6E-16 3.3E-20 184.3 24.0 151 440-604 660-866 (1249)
118 2ovr_B FBW7, F-BOX/WD repeat p 99.7 3.3E-15 1.1E-19 159.7 23.5 141 440-604 122-263 (445)
119 1p22_A F-BOX/WD-repeat protein 99.7 2.8E-15 9.6E-20 160.2 22.8 141 440-604 136-280 (435)
120 1pgu_A Actin interacting prote 99.7 1.9E-15 6.5E-20 166.0 22.1 148 440-604 119-278 (615)
121 1p22_A F-BOX/WD-repeat protein 99.7 2.7E-15 9.3E-20 160.3 21.9 144 440-604 176-320 (435)
122 2ovr_B FBW7, F-BOX/WD repeat p 99.7 5.7E-15 2E-19 157.8 23.2 141 440-604 162-303 (445)
123 1l0q_A Surface layer protein; 99.6 7.6E-15 2.6E-19 152.9 22.0 148 440-604 34-184 (391)
124 3bws_A Protein LP49; two-domai 99.6 7.4E-15 2.5E-19 155.2 19.8 149 440-604 172-329 (433)
125 1l0q_A Surface layer protein; 99.6 4.8E-14 1.6E-18 146.8 22.2 148 440-604 118-270 (391)
126 2oit_A Nucleoporin 214KDA; NH2 99.6 4.8E-15 1.6E-19 160.6 14.3 158 440-604 39-218 (434)
127 3bws_A Protein LP49; two-domai 99.6 7.4E-14 2.5E-18 147.5 21.7 149 440-604 256-427 (433)
128 2w18_A PALB2, fancn, partner a 99.6 6E-14 2E-18 148.0 20.3 149 440-604 114-309 (356)
129 2hqs_A Protein TOLB; TOLB, PAL 99.5 3.8E-12 1.3E-16 136.4 22.2 143 440-600 181-333 (415)
130 2ojh_A Uncharacterized protein 99.4 3.6E-12 1.2E-16 125.1 17.3 150 440-604 44-199 (297)
131 1ri6_A Putative isomerase YBHE 99.4 4.7E-12 1.6E-16 128.1 17.3 155 440-604 40-204 (343)
132 2hqs_A Protein TOLB; TOLB, PAL 99.3 2.7E-11 9.3E-16 129.8 19.9 136 450-601 143-290 (415)
133 1nir_A Nitrite reductase; hemo 99.3 2.8E-11 9.6E-16 134.9 19.8 145 445-604 145-306 (543)
134 3vgz_A Uncharacterized protein 99.3 9E-11 3.1E-15 119.5 21.0 153 440-604 91-257 (353)
135 2ojh_A Uncharacterized protein 99.3 1.9E-11 6.5E-16 119.9 15.1 146 440-600 131-294 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.3 2.6E-11 8.9E-16 137.8 16.6 147 440-599 39-229 (741)
137 3vgz_A Uncharacterized protein 99.3 1.9E-10 6.5E-15 117.1 21.4 148 440-604 143-298 (353)
138 3hfq_A Uncharacterized protein 99.3 1.1E-10 3.8E-15 119.9 18.7 155 440-604 42-213 (347)
139 3u4y_A Uncharacterized protein 99.3 2.8E-10 9.6E-15 115.4 21.2 147 442-604 44-202 (331)
140 1ri6_A Putative isomerase YBHE 99.3 1.7E-10 5.8E-15 116.6 19.4 156 440-604 86-257 (343)
141 1a9n_A U2A', U2A'; complex (nu 99.3 6.4E-12 2.2E-16 118.7 7.8 145 100-355 19-163 (176)
142 3u4y_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 116.9 18.3 144 445-603 5-154 (331)
143 1nir_A Nitrite reductase; hemo 99.2 2E-10 6.7E-15 128.1 19.9 148 440-604 181-350 (543)
144 3hfq_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 115.6 20.4 156 440-604 143-312 (347)
145 1xfd_A DIP, dipeptidyl aminope 99.2 1.1E-10 3.8E-15 132.0 15.0 144 440-596 63-273 (723)
146 1xfd_A DIP, dipeptidyl aminope 99.2 2.6E-11 9E-16 137.1 9.5 142 440-596 19-191 (723)
147 1pby_B Quinohemoprotein amine 99.2 5.4E-10 1.9E-14 112.5 16.5 132 451-595 2-152 (337)
148 1jmx_B Amine dehydrogenase; ox 99.2 3.7E-10 1.3E-14 114.5 15.1 155 440-604 94-320 (349)
149 2z3z_A Dipeptidyl aminopeptida 99.1 3.6E-10 1.2E-14 127.8 16.4 151 440-600 183-378 (706)
150 3scy_A Hypothetical bacterial 99.1 3.3E-09 1.1E-13 109.6 22.0 152 440-604 157-332 (361)
151 1pby_B Quinohemoprotein amine 99.1 8.5E-10 2.9E-14 111.1 17.1 120 440-573 36-171 (337)
152 3o4h_A Acylamino-acid-releasin 99.1 3E-10 1E-14 125.9 14.6 142 442-604 114-271 (582)
153 1z68_A Fibroblast activation p 99.1 1E-10 3.5E-15 132.7 10.2 141 442-599 20-189 (719)
154 1jmx_B Amine dehydrogenase; ox 99.1 4.3E-10 1.5E-14 114.1 12.9 136 444-594 6-163 (349)
155 2ecf_A Dipeptidyl peptidase IV 99.1 5.4E-10 1.9E-14 126.9 14.8 146 440-600 211-402 (741)
156 2z3z_A Dipeptidyl aminopeptida 99.1 4.3E-10 1.5E-14 127.1 13.0 149 440-604 123-337 (706)
157 1k32_A Tricorn protease; prote 99.1 1.3E-09 4.4E-14 129.9 17.6 141 440-599 340-492 (1045)
158 1k32_A Tricorn protease; prote 99.1 1.2E-09 4.2E-14 130.1 16.3 139 440-597 298-440 (1045)
159 1jof_A Carboxy-CIS,CIS-muconat 99.0 2.7E-09 9.2E-14 111.4 16.0 155 440-604 42-219 (365)
160 3scy_A Hypothetical bacterial 99.0 2.9E-08 9.9E-13 102.4 22.3 157 440-604 52-237 (361)
161 1z68_A Fibroblast activation p 99.0 6.3E-10 2.2E-14 126.2 10.5 148 440-596 62-270 (719)
162 3o4h_A Acylamino-acid-releasin 99.0 1.9E-09 6.5E-14 119.4 13.8 137 441-601 153-304 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.0 1.8E-09 6.1E-14 124.0 14.0 140 440-596 19-189 (740)
164 1jof_A Carboxy-CIS,CIS-muconat 99.0 1.6E-08 5.5E-13 105.5 18.9 160 440-604 147-336 (365)
165 1q7f_A NHL, brain tumor CG1071 99.0 4.7E-08 1.6E-12 97.4 20.9 147 440-604 123-275 (286)
166 1ds9_A Outer arm dynein; leuci 98.9 1.5E-10 5E-15 111.4 0.2 139 126-352 49-194 (198)
167 1xip_A Nucleoporin NUP159; bet 98.9 2.4E-08 8.3E-13 107.0 17.4 133 440-596 90-232 (388)
168 3fvz_A Peptidyl-glycine alpha- 98.9 1.8E-07 6.1E-12 96.3 22.0 152 440-604 26-222 (329)
169 3fvz_A Peptidyl-glycine alpha- 98.9 9.8E-08 3.4E-12 98.3 19.2 153 439-604 144-317 (329)
170 1xip_A Nucleoporin NUP159; bet 98.8 2.9E-08 9.9E-13 106.4 15.4 138 440-604 40-186 (388)
171 3azo_A Aminopeptidase; POP fam 98.8 3.3E-08 1.1E-12 110.8 15.0 150 440-604 132-318 (662)
172 2dg1_A DRP35, lactonase; beta 98.8 3.5E-07 1.2E-11 93.0 21.2 148 440-603 47-207 (333)
173 1h6t_A Internalin B; cell adhe 98.8 1.6E-09 5.3E-14 111.0 3.4 39 309-347 204-242 (291)
174 4a5s_A Dipeptidyl peptidase 4 98.8 4.3E-08 1.5E-12 112.5 14.9 150 441-597 65-279 (740)
175 2je0_A Acidic leucine-rich nuc 98.7 1.1E-08 3.8E-13 93.3 7.1 102 100-203 17-118 (149)
176 3azo_A Aminopeptidase; POP fam 98.7 7.1E-08 2.4E-12 108.1 14.8 150 443-602 82-265 (662)
177 2ell_A Acidic leucine-rich nuc 98.7 5.2E-09 1.8E-13 97.4 4.7 102 100-203 24-125 (168)
178 3pe7_A Oligogalacturonate lyas 98.7 1.6E-07 5.4E-12 97.2 16.3 139 443-597 41-208 (388)
179 1q7f_A NHL, brain tumor CG1071 98.7 8.1E-07 2.8E-11 88.4 20.2 151 439-604 31-189 (286)
180 1h6u_A Internalin H; cell adhe 98.7 5.8E-09 2E-13 107.5 4.4 73 127-206 87-159 (308)
181 3e6j_A Variable lymphocyte rec 98.7 2.1E-08 7E-13 98.9 7.4 40 309-348 163-206 (229)
182 2xdw_A Prolyl endopeptidase; a 98.6 4.4E-07 1.5E-11 103.4 17.7 146 440-600 127-308 (710)
183 3pe7_A Oligogalacturonate lyas 98.6 8.5E-07 2.9E-11 91.7 18.2 142 442-598 85-258 (388)
184 1h6u_A Internalin H; cell adhe 98.6 7.3E-08 2.5E-12 99.2 8.7 99 100-208 41-139 (308)
185 1m9s_A Internalin B; cell inva 98.6 1.6E-08 5.4E-13 114.4 3.8 99 100-208 65-163 (605)
186 3e5z_A Putative gluconolactona 98.6 1.8E-06 6E-11 86.7 18.3 147 440-604 30-197 (296)
187 1h6t_A Internalin B; cell adhe 98.6 7.6E-08 2.6E-12 98.4 8.2 98 100-207 46-143 (291)
188 4fmz_A Internalin; leucine ric 98.6 1.1E-07 3.8E-12 98.3 9.3 75 127-208 68-142 (347)
189 1xeu_A Internalin C; cellular 98.6 9E-09 3.1E-13 103.8 0.9 173 100-347 41-214 (263)
190 1rwi_B Serine/threonine-protei 98.6 1.2E-06 4.2E-11 85.8 16.4 150 440-604 110-259 (270)
191 4ezg_A Putative uncharacterize 98.6 7.6E-08 2.6E-12 92.2 7.4 101 101-208 45-146 (197)
192 2gop_A Trilobed protease; beta 98.6 8.4E-07 2.9E-11 90.4 15.6 133 440-599 17-190 (347)
193 2oiz_A Aromatic amine dehydrog 98.6 1.5E-06 5E-11 91.3 17.5 72 506-590 287-360 (361)
194 4fmz_A Internalin; leucine ric 98.5 1.9E-07 6.6E-12 96.6 10.0 197 99-338 131-339 (347)
195 3zyj_A Leucine-rich repeat-con 98.5 8.3E-08 2.8E-12 103.4 7.4 104 100-207 64-169 (440)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 3E-06 1E-10 84.8 18.2 154 440-603 119-293 (314)
197 2gop_A Trilobed protease; beta 98.5 1.5E-06 5.2E-11 88.5 15.9 136 440-598 61-235 (347)
198 3zyj_A Leucine-rich repeat-con 98.5 9.1E-08 3.1E-12 103.0 6.8 105 100-208 88-195 (440)
199 2bkl_A Prolyl endopeptidase; m 98.5 9.3E-07 3.2E-11 100.6 15.0 140 440-597 123-289 (695)
200 3rfs_A Internalin B, repeat mo 98.5 1.3E-07 4.4E-12 95.3 7.0 102 101-208 42-143 (272)
201 3zyi_A Leucine-rich repeat-con 98.5 1.3E-07 4.6E-12 102.1 7.6 104 100-207 75-180 (452)
202 4glp_A Monocyte differentiatio 98.5 1.8E-07 6.3E-12 95.9 8.1 146 56-208 52-207 (310)
203 1o6v_A Internalin A; bacterial 98.5 2.8E-07 9.6E-12 99.9 9.8 98 100-207 68-165 (466)
204 3rw6_A Nuclear RNA export fact 98.5 1.1E-07 3.9E-12 96.8 6.0 87 99-199 126-219 (267)
205 1rwi_B Serine/threonine-protei 98.5 3.4E-06 1.2E-10 82.6 16.3 149 440-604 69-217 (270)
206 3c5m_A Oligogalacturonate lyas 98.5 2E-06 6.8E-11 88.6 15.1 145 440-601 190-374 (396)
207 3zyi_A Leucine-rich repeat-con 98.5 1.6E-07 5.5E-12 101.5 7.0 105 100-208 99-206 (452)
208 3o53_A Protein LRIM1, AGAP0063 98.5 1.6E-07 5.4E-12 96.7 6.7 78 126-207 100-178 (317)
209 2ca6_A RAN GTPase-activating p 98.5 1.1E-07 3.7E-12 100.4 5.5 155 48-208 11-197 (386)
210 1m9s_A Internalin B; cell inva 98.4 1.3E-07 4.4E-12 106.9 6.2 188 100-344 43-236 (605)
211 2dg1_A DRP35, lactonase; beta 98.4 4.7E-06 1.6E-10 84.6 17.3 151 440-598 137-300 (333)
212 1ozn_A Reticulon 4 receptor; N 98.4 4.5E-07 1.5E-11 91.5 9.5 105 100-207 32-138 (285)
213 1dce_A Protein (RAB geranylger 98.4 8.3E-08 2.8E-12 107.7 3.8 87 113-207 431-517 (567)
214 2oiz_A Aromatic amine dehydrog 98.4 2.7E-06 9.3E-11 89.2 15.1 136 449-602 14-175 (361)
215 2o6q_A Variable lymphocyte rec 98.4 3E-07 1E-11 92.4 7.4 11 309-319 209-219 (270)
216 3no2_A Uncharacterized protein 98.4 5.1E-06 1.7E-10 84.1 16.3 138 449-604 4-150 (276)
217 3c5m_A Oligogalacturonate lyas 98.4 7.2E-07 2.5E-11 92.0 10.1 141 443-598 86-258 (396)
218 3e5z_A Putative gluconolactona 98.4 5.1E-06 1.7E-10 83.3 16.0 147 439-604 116-282 (296)
219 3dsm_A Uncharacterized protein 98.4 5.4E-06 1.8E-10 85.4 16.6 145 440-597 86-244 (328)
220 3m19_A Variable lymphocyte rec 98.4 5.3E-07 1.8E-11 89.5 8.5 104 100-207 35-140 (251)
221 3o6n_A APL1; leucine-rich repe 98.4 6.6E-07 2.3E-11 94.4 9.6 132 68-208 42-175 (390)
222 1p9a_G Platelet glycoprotein I 98.4 3.8E-07 1.3E-11 93.2 7.3 103 100-207 31-133 (290)
223 2z62_A TOLL-like receptor 4, v 98.4 4.1E-07 1.4E-11 91.3 7.3 103 101-207 29-133 (276)
224 2o6q_A Variable lymphocyte rec 98.4 3.9E-07 1.3E-11 91.5 7.0 104 100-207 61-166 (270)
225 3o6n_A APL1; leucine-rich repe 98.4 4.9E-07 1.7E-11 95.4 8.0 77 128-207 72-150 (390)
226 2xdw_A Prolyl endopeptidase; a 98.4 1.3E-05 4.5E-10 91.2 20.4 157 440-604 173-361 (710)
227 1wwl_A Monocyte differentiatio 98.4 1.7E-07 5.8E-12 96.3 4.2 122 86-208 80-211 (312)
228 4ezg_A Putative uncharacterize 98.4 2.5E-07 8.5E-12 88.6 4.8 77 127-208 46-122 (197)
229 2z2n_A Virginiamycin B lyase; 98.3 4.7E-05 1.6E-09 75.0 21.4 145 440-602 17-164 (299)
230 3g4e_A Regucalcin; six bladed 98.3 1.4E-05 4.7E-10 80.9 17.7 155 438-600 98-264 (297)
231 1o6v_A Internalin A; bacterial 98.3 1.1E-06 3.8E-11 95.2 10.1 99 100-208 177-275 (466)
232 2bkl_A Prolyl endopeptidase; m 98.3 1.5E-05 5.1E-10 90.6 19.5 148 441-604 171-344 (695)
233 2xwt_C Thyrotropin receptor; s 98.3 2.4E-07 8.1E-12 91.2 3.9 104 100-208 31-140 (239)
234 1yr2_A Prolyl oligopeptidase; 98.3 5.4E-06 1.8E-10 95.1 15.8 144 440-599 165-337 (741)
235 2v70_A SLIT-2, SLIT homolog 2 98.3 6.8E-07 2.3E-11 87.4 6.9 98 103-207 14-114 (220)
236 1qks_A Cytochrome CD1 nitrite 98.3 2.2E-05 7.6E-10 88.0 20.1 142 449-602 166-322 (567)
237 3oja_B Anopheles plasmodium-re 98.3 1.1E-06 3.6E-11 98.7 9.4 130 67-208 47-181 (597)
238 2v9t_B SLIT homolog 2 protein 98.3 6.4E-07 2.2E-11 87.6 5.9 77 127-206 34-112 (220)
239 2xot_A Amphoterin-induced prot 98.3 9.1E-07 3.1E-11 92.9 7.2 103 101-207 40-145 (361)
240 3no2_A Uncharacterized protein 98.3 2.2E-05 7.5E-10 79.4 17.2 143 440-603 39-189 (276)
241 1qks_A Cytochrome CD1 nitrite 98.3 5E-05 1.7E-09 85.1 21.7 149 440-603 199-367 (567)
242 3oja_B Anopheles plasmodium-re 98.3 1.6E-06 5.4E-11 97.3 9.5 102 100-208 99-202 (597)
243 3rfs_A Internalin B, repeat mo 98.3 1.4E-06 4.9E-11 87.5 8.0 103 100-208 63-167 (272)
244 2ft3_A Biglycan; proteoglycan, 98.2 3E-06 1E-10 87.4 10.5 98 100-207 54-156 (332)
245 2wfh_A SLIT homolog 2 protein 98.2 8.2E-07 2.8E-11 85.2 5.7 103 100-207 31-135 (193)
246 4fcg_A Uncharacterized protein 98.2 1.1E-06 3.7E-11 91.3 6.8 52 128-181 107-159 (328)
247 2r9u_A Variable lymphocyte rec 98.2 1.4E-06 4.7E-11 82.3 6.8 61 126-187 34-96 (174)
248 4fcg_A Uncharacterized protein 98.2 7.1E-07 2.4E-11 92.7 5.2 77 128-207 130-215 (328)
249 3e6j_A Variable lymphocyte rec 98.2 1.3E-06 4.6E-11 85.8 6.9 103 100-207 40-144 (229)
250 2z66_A Variable lymphocyte rec 98.2 1.3E-06 4.6E-11 88.8 7.0 102 100-208 52-160 (306)
251 2z66_A Variable lymphocyte rec 98.2 1.2E-06 4.1E-11 89.2 6.6 106 99-208 27-136 (306)
252 1p9a_G Platelet glycoprotein I 98.2 1.3E-06 4.4E-11 89.2 6.7 102 100-207 55-157 (290)
253 1ozn_A Reticulon 4 receptor; N 98.2 1.1E-06 3.9E-11 88.5 6.2 105 100-208 56-163 (285)
254 3hrp_A Uncharacterized protein 98.2 4.3E-05 1.5E-09 81.7 18.6 150 439-604 132-293 (409)
255 2v70_A SLIT-2, SLIT homolog 2 98.2 9E-07 3.1E-11 86.6 5.0 106 99-207 31-138 (220)
256 2z2n_A Virginiamycin B lyase; 98.2 0.00017 5.8E-09 71.0 21.4 147 440-603 59-207 (299)
257 1w8a_A SLIT protein; signaling 98.2 9E-07 3.1E-11 84.6 4.7 98 103-207 11-111 (192)
258 2id5_A Lingo-1, leucine rich r 98.2 1.7E-06 5.8E-11 93.6 7.2 78 127-207 106-185 (477)
259 2v9t_B SLIT homolog 2 protein 98.2 1.3E-06 4.6E-11 85.3 5.7 104 100-207 32-137 (220)
260 3bz5_A Internalin-J, INLJ; leu 98.2 1.4E-06 4.9E-11 94.8 6.5 95 100-208 64-158 (457)
261 2z62_A TOLL-like receptor 4, v 98.2 1.5E-06 5.2E-11 87.1 6.1 80 126-208 29-110 (276)
262 1xeu_A Internalin C; cellular 98.2 1.7E-06 6E-11 86.9 6.4 103 100-213 85-187 (263)
263 2xot_A Amphoterin-induced prot 98.2 1.5E-06 5.2E-11 91.2 5.9 171 103-324 21-208 (361)
264 3oja_A Leucine-rich immune mol 98.1 2.6E-06 9E-11 93.4 7.9 56 263-319 189-251 (487)
265 1a9n_A U2A', U2A'; complex (nu 98.1 2.4E-06 8.4E-11 80.1 6.6 130 69-208 17-150 (176)
266 1pjx_A Dfpase, DIISOPROPYLFLUO 98.1 7.9E-05 2.7E-09 74.3 18.1 152 440-603 20-201 (314)
267 2ell_A Acidic leucine-rich nuc 98.1 2.7E-06 9.2E-11 78.9 6.7 106 100-209 49-158 (168)
268 2z80_A TOLL-like receptor 2, v 98.1 2E-06 6.8E-11 89.6 6.4 105 100-208 76-184 (353)
269 3goz_A Leucine-rich repeat-con 98.1 2.5E-06 8.6E-11 89.4 7.2 108 100-208 51-177 (362)
270 3m19_A Variable lymphocyte rec 98.1 1.9E-06 6.5E-11 85.5 5.9 77 128-207 110-188 (251)
271 2o6s_A Variable lymphocyte rec 98.1 2.1E-06 7.2E-11 82.4 5.9 105 100-208 52-158 (208)
272 2ft3_A Biglycan; proteoglycan, 98.1 5.7E-06 1.9E-10 85.3 9.5 76 126-207 55-132 (332)
273 2id5_A Lingo-1, leucine rich r 98.1 1.3E-06 4.6E-11 94.4 5.0 101 100-207 32-137 (477)
274 2o6s_A Variable lymphocyte rec 98.1 2E-06 6.9E-11 82.6 5.5 105 100-208 28-134 (208)
275 3dsm_A Uncharacterized protein 98.1 6.2E-05 2.1E-09 77.4 17.1 140 440-599 46-192 (328)
276 2xwt_C Thyrotropin receptor; s 98.1 9.3E-07 3.2E-11 86.9 3.1 81 126-209 32-116 (239)
277 3g39_A Variable lymphocyte rec 98.1 1.7E-06 5.9E-11 81.2 4.8 98 103-207 12-111 (170)
278 1w8a_A SLIT protein; signaling 98.1 1.8E-06 6.2E-11 82.5 5.0 106 100-208 29-136 (192)
279 3t6q_A CD180 antigen; protein- 98.1 1.7E-06 5.8E-11 96.4 5.5 103 101-207 255-359 (606)
280 1yr2_A Prolyl oligopeptidase; 98.1 0.0001 3.4E-09 84.5 20.4 149 441-604 212-388 (741)
281 2z7x_B TOLL-like receptor 1, v 98.1 9.8E-06 3.4E-10 88.5 11.4 83 126-209 303-385 (520)
282 2o6r_A Variable lymphocyte rec 98.1 2.5E-06 8.5E-11 79.9 5.8 105 100-208 28-134 (177)
283 1xku_A Decorin; proteoglycan, 98.1 5.6E-06 1.9E-10 85.2 8.8 102 100-207 76-180 (330)
284 2ghs_A AGR_C_1268P; regucalcin 98.1 0.00018 6.1E-09 73.9 19.9 148 439-600 135-294 (326)
285 2qc5_A Streptogramin B lactona 98.1 0.00035 1.2E-08 68.6 21.4 146 440-602 22-169 (300)
286 1z7x_W Ribonuclease inhibitor; 98.1 3.4E-06 1.2E-10 90.4 7.1 133 72-208 29-180 (461)
287 1xku_A Decorin; proteoglycan, 98.1 3.2E-06 1.1E-10 87.0 6.4 99 100-208 100-202 (330)
288 3iuj_A Prolyl endopeptidase; h 98.1 3.4E-05 1.2E-09 87.9 15.2 144 440-599 131-301 (693)
289 3hrp_A Uncharacterized protein 98.0 0.00019 6.7E-09 76.6 19.8 149 440-604 221-405 (409)
290 2z80_A TOLL-like receptor 2, v 98.0 2.4E-06 8.2E-11 88.9 4.3 106 100-208 52-159 (353)
291 2qc5_A Streptogramin B lactona 98.0 0.00063 2.2E-08 66.8 21.6 147 440-602 64-211 (300)
292 3g4e_A Regucalcin; six bladed 98.0 0.00025 8.6E-09 71.5 19.0 147 440-603 15-174 (297)
293 2wfh_A SLIT homolog 2 protein 98.0 4.1E-06 1.4E-10 80.3 5.3 97 103-207 13-111 (193)
294 2ca6_A RAN GTPase-activating p 98.0 1.4E-05 4.9E-10 84.1 9.9 210 71-338 94-336 (386)
295 1ziw_A TOLL-like receptor 3; i 98.0 6.4E-06 2.2E-10 93.1 7.6 23 261-283 556-578 (680)
296 3cvr_A Invasion plasmid antige 98.0 1.3E-05 4.6E-10 89.9 10.1 110 81-208 40-150 (571)
297 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.9E-05 6.4E-10 87.5 11.1 82 126-208 332-413 (562)
298 2je0_A Acidic leucine-rich nuc 98.0 4.5E-06 1.5E-10 75.8 5.0 103 100-206 42-148 (149)
299 4g8a_A TOLL-like receptor 4; l 98.0 7E-06 2.4E-10 90.9 7.5 100 101-207 53-157 (635)
300 2ghs_A AGR_C_1268P; regucalcin 98.0 0.00043 1.5E-08 71.0 20.3 145 440-603 51-204 (326)
301 3goz_A Leucine-rich repeat-con 98.0 1.3E-05 4.3E-10 84.0 8.9 162 45-208 55-235 (362)
302 3vq2_A TLR4, TOLL-like recepto 98.0 7.9E-06 2.7E-10 90.9 7.4 106 100-208 350-458 (606)
303 3bz5_A Internalin-J, INLJ; leu 98.0 1.1E-05 3.7E-10 87.8 8.2 188 100-338 42-239 (457)
304 3t6q_A CD180 antigen; protein- 97.9 1.9E-05 6.5E-10 87.8 9.9 78 128-207 353-434 (606)
305 3o53_A Protein LRIM1, AGAP0063 97.9 6.9E-06 2.4E-10 84.4 5.7 104 100-208 144-247 (317)
306 3v47_A TOLL-like receptor 5B a 97.9 1.3E-05 4.5E-10 85.7 7.9 77 128-207 278-356 (455)
307 2z81_A CD282 antigen, TOLL-lik 97.9 1.2E-05 4.2E-10 88.1 7.4 33 250-282 434-468 (549)
308 3j0a_A TOLL-like receptor 5; m 97.9 8.5E-06 2.9E-10 95.2 6.4 77 128-207 269-347 (844)
309 1z7x_W Ribonuclease inhibitor; 97.9 1.1E-05 3.9E-10 86.3 6.7 131 72-209 171-324 (461)
310 3g06_A SSPH2 (leucine-rich rep 97.9 1.6E-05 5.5E-10 90.1 8.0 77 100-188 81-157 (622)
311 2qe8_A Uncharacterized protein 97.9 0.00018 6E-09 74.4 15.2 161 439-604 68-273 (343)
312 4ecn_A Leucine-rich repeat pro 97.9 8.6E-06 2.9E-10 95.8 5.8 104 100-209 515-630 (876)
313 3g06_A SSPH2 (leucine-rich rep 97.9 1.6E-05 5.5E-10 90.1 7.8 68 128-208 84-151 (622)
314 2ast_B S-phase kinase-associat 97.8 1.3E-05 4.3E-10 82.2 5.9 104 100-208 47-152 (336)
315 1wwl_A Monocyte differentiatio 97.8 1.2E-05 4E-10 82.4 5.4 101 99-207 200-305 (312)
316 2qe8_A Uncharacterized protein 97.8 0.00048 1.6E-08 71.1 17.5 146 440-599 19-216 (343)
317 1ziw_A TOLL-like receptor 3; i 97.8 3.6E-05 1.2E-09 86.9 9.5 107 100-209 353-465 (680)
318 1ogq_A PGIP-2, polygalacturona 97.8 2.1E-05 7.1E-10 80.8 6.9 103 100-208 101-207 (313)
319 1npe_A Nidogen, entactin; glyc 97.8 0.0035 1.2E-07 61.7 22.9 151 440-603 38-192 (267)
320 2mad_H Methylamine dehydrogena 97.8 0.0014 4.8E-08 69.1 20.8 153 440-603 127-344 (373)
321 2hz6_A Endoplasmic reticulum t 97.8 4.6E-06 1.6E-10 87.9 0.8 134 449-604 8-144 (369)
322 3sjl_D Methylamine dehydrogena 97.8 0.00035 1.2E-08 74.6 15.4 114 445-574 40-178 (386)
323 3dr2_A Exported gluconolactona 97.8 0.00068 2.3E-08 68.4 16.8 141 440-598 47-208 (305)
324 3vq2_A TLR4, TOLL-like recepto 97.7 3E-05 1E-09 86.2 7.0 105 100-208 32-138 (606)
325 2mad_H Methylamine dehydrogena 97.7 0.0013 4.4E-08 69.4 19.3 132 449-601 31-188 (373)
326 2o6r_A Variable lymphocyte rec 97.7 4.2E-05 1.4E-09 71.4 6.9 86 100-187 52-139 (177)
327 1ogq_A PGIP-2, polygalacturona 97.7 3.6E-05 1.2E-09 79.0 6.9 101 100-208 125-231 (313)
328 3rgz_A Protein brassinosteroid 97.7 4.7E-05 1.6E-09 88.0 8.6 77 128-208 181-257 (768)
329 1dce_A Protein (RAB geranylger 97.7 2.6E-05 8.7E-10 87.4 6.2 104 100-210 441-545 (567)
330 2z63_A TOLL-like receptor 4, v 97.7 2.9E-05 1E-09 85.3 6.4 105 100-208 28-134 (570)
331 4g8a_A TOLL-like receptor 4; l 97.7 2E-05 6.7E-10 87.3 5.0 105 100-207 469-576 (635)
332 2z81_A CD282 antigen, TOLL-lik 97.7 1.8E-05 6.1E-10 86.8 4.7 105 100-207 26-132 (549)
333 1jl5_A Outer protein YOPM; leu 97.7 6.5E-05 2.2E-09 81.6 8.8 80 100-187 131-210 (454)
334 3cvr_A Invasion plasmid antige 97.7 3.1E-05 1.1E-09 86.9 6.4 91 100-208 80-170 (571)
335 3oja_A Leucine-rich immune mol 97.7 2.9E-05 9.8E-10 85.1 5.8 103 100-207 144-246 (487)
336 4ecn_A Leucine-rich repeat pro 97.7 5.9E-05 2E-09 88.7 8.5 103 101-208 645-763 (876)
337 4eco_A Uncharacterized protein 97.6 6E-05 2E-09 85.3 7.6 103 102-207 379-497 (636)
338 2ast_B S-phase kinase-associat 97.6 8E-05 2.7E-09 76.2 7.8 108 99-209 141-258 (336)
339 3rgz_A Protein brassinosteroid 97.6 4.5E-05 1.5E-09 88.1 6.6 103 100-208 247-353 (768)
340 3v47_A TOLL-like receptor 5B a 97.6 3.6E-05 1.2E-09 82.3 5.4 104 100-207 275-380 (455)
341 2r9u_A Variable lymphocyte rec 97.6 7.5E-05 2.6E-09 70.2 6.8 92 100-193 33-126 (174)
342 3dr2_A Exported gluconolactona 97.6 0.00052 1.8E-08 69.3 13.5 146 439-604 132-302 (305)
343 1yiq_A Quinohemoprotein alcoho 97.6 0.00059 2E-08 78.0 15.5 136 452-598 321-538 (689)
344 4eco_A Uncharacterized protein 97.6 7.1E-05 2.4E-09 84.6 7.8 104 101-208 403-523 (636)
345 1jl5_A Outer protein YOPM; leu 97.6 9.9E-05 3.4E-09 80.1 8.6 95 100-208 111-205 (454)
346 1kb0_A Quinohemoprotein alcoho 97.6 0.00053 1.8E-08 78.3 14.3 136 451-597 328-539 (677)
347 2iwa_A Glutamine cyclotransfer 97.5 0.0064 2.2E-07 61.6 20.3 145 440-602 23-174 (266)
348 3un9_A NLR family member X1; l 97.5 3.8E-05 1.3E-09 81.5 3.8 134 72-209 73-222 (372)
349 4b8c_D Glucose-repressible alc 97.5 4.9E-05 1.7E-09 87.6 4.4 101 100-207 224-325 (727)
350 4glp_A Monocyte differentiatio 97.5 4E-05 1.4E-09 78.3 2.9 68 129-204 228-300 (310)
351 2z7x_B TOLL-like receptor 1, v 97.5 0.00013 4.5E-09 79.5 6.9 104 100-208 374-478 (520)
352 1ds9_A Outer arm dynein; leuci 97.4 6.9E-06 2.3E-10 78.5 -3.1 84 100-186 70-154 (198)
353 2z63_A TOLL-like receptor 4, v 97.4 0.00011 3.8E-09 80.7 5.9 106 100-208 52-159 (570)
354 3g39_A Variable lymphocyte rec 97.4 0.0002 6.9E-09 66.8 6.6 84 100-185 30-115 (170)
355 3c75_H MADH, methylamine dehyd 97.4 0.0015 5.1E-08 70.6 14.2 133 449-596 83-246 (426)
356 3iuj_A Prolyl endopeptidase; h 97.4 0.0049 1.7E-07 70.0 19.1 147 441-603 178-351 (693)
357 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00016 5.5E-09 80.0 6.0 78 127-209 430-508 (562)
358 2ece_A 462AA long hypothetical 97.3 0.005 1.7E-07 66.9 17.2 153 439-604 139-347 (462)
359 4b8c_D Glucose-repressible alc 97.3 0.00016 5.6E-09 83.2 5.9 79 124-207 223-302 (727)
360 3nok_A Glutaminyl cyclase; bet 97.2 0.012 4.1E-07 59.6 17.9 132 449-597 105-254 (268)
361 2iwa_A Glutamine cyclotransfer 97.2 0.0095 3.3E-07 60.3 17.3 136 451-602 77-230 (266)
362 3un9_A NLR family member X1; l 97.2 0.00033 1.1E-08 74.2 6.3 133 71-208 101-249 (372)
363 3j0a_A TOLL-like receptor 5; m 97.2 0.00025 8.4E-09 82.8 5.3 103 100-208 48-158 (844)
364 2ece_A 462AA long hypothetical 97.2 0.0065 2.2E-07 66.0 15.9 142 447-602 93-282 (462)
365 3mbr_X Glutamine cyclotransfer 97.1 0.017 5.8E-07 57.7 17.7 131 450-597 75-223 (243)
366 1kb0_A Quinohemoprotein alcoho 97.1 0.0061 2.1E-07 69.4 16.0 158 442-604 247-502 (677)
367 3tc9_A Hypothetical hydrolase; 97.1 0.018 6.3E-07 61.7 19.0 151 439-603 138-295 (430)
368 4ay9_X Follicle-stimulating ho 97.1 0.00027 9.3E-09 73.5 4.4 77 128-207 33-113 (350)
369 1yiq_A Quinohemoprotein alcoho 97.1 0.012 4.2E-07 67.1 18.4 158 442-604 239-500 (689)
370 2fp8_A Strictosidine synthase; 97.1 0.027 9.1E-07 57.0 19.0 152 440-603 21-210 (322)
371 3nol_A Glutamine cyclotransfer 97.1 0.012 3.9E-07 59.5 15.7 130 451-597 98-244 (262)
372 3nol_A Glutamine cyclotransfer 97.1 0.022 7.6E-07 57.4 17.7 161 421-602 28-194 (262)
373 3nok_A Glutaminyl cyclase; bet 97.1 0.032 1.1E-06 56.4 18.8 163 418-602 37-203 (268)
374 2ifg_A High affinity nerve gro 97.1 0.0003 1E-08 72.7 4.0 78 126-207 32-112 (347)
375 3v64_C Agrin; beta propeller, 97.0 0.042 1.4E-06 57.1 19.9 151 440-603 75-228 (349)
376 1mda_H Methylamine dehydrogena 97.0 0.0044 1.5E-07 65.6 12.3 158 442-603 69-340 (368)
377 1npe_A Nidogen, entactin; glyc 97.0 0.029 9.8E-07 55.1 17.6 137 440-590 124-263 (267)
378 3ogk_B Coronatine-insensitive 96.9 0.00093 3.2E-08 73.7 6.8 33 170-205 218-250 (592)
379 3mbr_X Glutamine cyclotransfer 96.9 0.13 4.4E-06 51.3 21.7 139 440-597 23-167 (243)
380 4ay9_X Follicle-stimulating ho 96.9 0.00057 2E-08 71.0 4.8 77 126-204 155-232 (350)
381 2ifg_A High affinity nerve gro 96.9 0.00061 2.1E-08 70.3 4.9 77 129-207 12-89 (347)
382 1ijq_A LDL receptor, low-densi 96.9 0.11 3.8E-06 52.8 21.9 151 440-603 32-189 (316)
383 3rw6_A Nuclear RNA export fact 96.9 0.00064 2.2E-08 69.0 4.8 79 126-206 171-259 (267)
384 3v65_B Low-density lipoprotein 96.9 0.047 1.6E-06 57.5 19.4 151 440-603 118-271 (386)
385 1io0_A Tropomodulin; LRR prote 96.9 0.00092 3.1E-08 63.4 5.4 116 91-207 27-160 (185)
386 2hz6_A Endoplasmic reticulum t 96.7 0.00066 2.3E-08 71.2 3.2 120 450-589 92-215 (369)
387 3sjl_D Methylamine dehydrogena 96.7 0.02 7E-07 60.9 14.7 111 443-568 83-212 (386)
388 3qqz_A Putative uncharacterize 96.7 0.057 2E-06 54.1 17.2 155 440-602 29-197 (255)
389 2xe4_A Oligopeptidase B; hydro 96.7 0.021 7.3E-07 65.6 16.0 144 440-599 176-340 (751)
390 3sb4_A Hypothetical leucine ri 96.7 0.0017 5.9E-08 66.7 6.1 109 90-205 216-328 (329)
391 2ad6_A Methanol dehydrogenase 96.6 0.034 1.2E-06 62.0 16.2 138 452-600 318-529 (571)
392 3p5b_L Low density lipoprotein 96.6 0.29 1E-05 51.7 22.7 151 440-603 114-271 (400)
393 4hw6_A Hypothetical protein, I 96.5 0.064 2.2E-06 57.6 17.4 153 439-604 140-299 (433)
394 1mda_H Methylamine dehydrogena 96.5 0.0039 1.3E-07 66.0 7.5 90 461-565 47-158 (368)
395 3e4g_A ATP synthase subunit S, 96.4 0.0013 4.4E-08 62.7 3.0 85 123-209 59-150 (176)
396 1flg_A Protein (quinoprotein e 96.4 0.065 2.2E-06 59.9 17.0 84 504-597 465-548 (582)
397 3c75_H MADH, methylamine dehyd 96.3 0.046 1.6E-06 58.9 14.4 119 443-572 270-409 (426)
398 1fwx_A Nitrous oxide reductase 96.1 0.0065 2.2E-07 68.1 6.7 153 441-598 198-408 (595)
399 1fwx_A Nitrous oxide reductase 96.1 0.1 3.5E-06 58.4 16.1 141 449-603 100-302 (595)
400 3sov_A LRP-6, low-density lipo 96.0 0.4 1.4E-05 49.1 19.6 151 440-603 37-191 (318)
401 1kv9_A Type II quinohemoprotei 95.9 0.055 1.9E-06 61.4 13.4 84 504-597 437-520 (668)
402 3q7m_A Lipoprotein YFGL, BAMB; 95.9 0.13 4.5E-06 52.7 15.1 132 450-604 239-373 (376)
403 1kv9_A Type II quinohemoprotei 95.9 0.15 5E-06 57.9 16.7 158 442-604 234-483 (668)
404 3kya_A Putative phosphatase; s 95.8 0.25 8.4E-06 54.3 17.6 160 440-604 141-336 (496)
405 3hxj_A Pyrrolo-quinoline quino 95.8 0.075 2.6E-06 52.8 12.5 140 440-604 179-319 (330)
406 3hxj_A Pyrrolo-quinoline quino 95.8 0.087 3E-06 52.3 12.9 130 450-602 107-237 (330)
407 2p4o_A Hypothetical protein; p 95.7 0.83 2.8E-05 45.6 20.0 148 440-603 34-192 (306)
408 3q7m_A Lipoprotein YFGL, BAMB; 95.7 0.28 9.7E-06 50.2 16.8 111 449-573 52-170 (376)
409 2xe4_A Oligopeptidase B; hydro 95.7 0.19 6.3E-06 57.7 16.8 151 441-604 224-393 (751)
410 1io0_A Tropomodulin; LRR prote 95.7 0.0075 2.6E-07 57.0 4.3 114 70-187 35-166 (185)
411 2p1m_B Transport inhibitor res 95.6 0.012 4.1E-07 64.7 6.4 62 146-209 455-517 (594)
412 3v64_C Agrin; beta propeller, 95.6 1 3.6E-05 46.3 20.9 148 440-603 118-269 (349)
413 3m0c_C LDL receptor, low-densi 95.6 0.7 2.4E-05 53.6 21.1 151 440-603 426-583 (791)
414 1w6s_A Methanol dehydrogenase 95.5 0.22 7.5E-06 55.9 16.1 53 545-597 483-535 (599)
415 3v65_B Low-density lipoprotein 95.5 0.8 2.7E-05 47.9 19.7 149 440-603 161-312 (386)
416 2fp8_A Strictosidine synthase; 95.5 0.51 1.8E-05 47.4 17.5 147 440-602 128-306 (322)
417 1ijq_A LDL receptor, low-densi 95.4 2.3 8E-05 42.9 22.3 149 440-603 79-232 (316)
418 2p4o_A Hypothetical protein; p 95.3 0.64 2.2E-05 46.5 17.5 139 449-598 127-278 (306)
419 4hw6_A Hypothetical protein, I 95.2 0.72 2.4E-05 49.3 18.5 158 440-604 230-428 (433)
420 1flg_A Protein (quinoprotein e 95.2 0.28 9.6E-06 54.7 15.7 56 460-516 291-357 (582)
421 2p9w_A MAL S 1 allergenic prot 95.1 0.99 3.4E-05 46.9 18.5 151 440-601 15-207 (334)
422 2ad6_A Methanol dehydrogenase 94.8 0.66 2.3E-05 51.5 17.3 139 461-604 273-489 (571)
423 4a0p_A LRP6, LRP-6, low-densit 94.8 2.4 8.1E-05 47.7 22.0 150 440-603 39-191 (628)
424 2p1m_B Transport inhibitor res 94.6 0.026 8.9E-07 62.0 5.0 13 264-276 288-300 (594)
425 3sb4_A Hypothetical leucine ri 94.5 0.022 7.6E-07 58.3 4.0 76 125-205 226-304 (329)
426 4a2l_A BT_4663, two-component 94.5 3.4 0.00011 47.1 22.7 147 439-603 358-521 (795)
427 3sre_A PON1, serum paraoxonase 94.4 1.8 6E-05 45.3 18.4 151 440-603 52-246 (355)
428 3p5b_L Low density lipoprotein 94.4 3.6 0.00012 43.2 21.0 150 440-603 161-314 (400)
429 2ra8_A Uncharacterized protein 94.3 0.077 2.6E-06 55.8 7.8 133 55-207 90-228 (362)
430 3sov_A LRP-6, low-density lipo 94.3 4 0.00014 41.5 20.6 149 440-603 81-232 (318)
431 2ra8_A Uncharacterized protein 94.3 0.02 6.9E-07 60.3 3.2 107 100-207 193-316 (362)
432 3pbp_A Nucleoporin NUP82; beta 94.2 3.6 0.00012 44.3 20.3 143 448-594 30-196 (452)
433 3ogk_B Coronatine-insensitive 94.1 0.036 1.2E-06 60.9 4.9 109 100-209 378-499 (592)
434 1w6s_A Methanol dehydrogenase 94.0 1.1 3.9E-05 50.0 17.0 72 443-516 246-344 (599)
435 1cru_A Protein (soluble quinop 93.9 1.5 5E-05 47.3 17.2 111 440-554 29-163 (454)
436 3m0c_C LDL receptor, low-densi 93.9 3.6 0.00012 47.6 21.3 150 440-603 473-626 (791)
437 3s94_A LRP-6, low-density lipo 93.7 4.5 0.00015 45.3 21.2 152 440-603 351-504 (619)
438 1n7d_A LDL receptor, low-densi 93.6 0.084 2.9E-06 60.3 6.9 151 440-603 408-565 (699)
439 2p9w_A MAL S 1 allergenic prot 93.6 1.7 5.6E-05 45.2 16.1 115 439-566 64-216 (334)
440 3e4g_A ATP synthase subunit S, 93.6 0.049 1.7E-06 51.6 4.2 99 101-200 62-169 (176)
441 3s94_A LRP-6, low-density lipo 93.5 5.1 0.00017 44.8 21.3 152 440-603 42-196 (619)
442 3pbp_A Nucleoporin NUP82; beta 93.3 1.2 4E-05 48.0 14.7 117 440-560 68-207 (452)
443 3rfe_A Platelet glycoprotein I 93.3 0.081 2.8E-06 47.2 4.9 54 129-184 12-67 (130)
444 3tc9_A Hypothetical hydrolase; 93.1 3.5 0.00012 43.7 18.3 156 440-604 228-425 (430)
445 4a0p_A LRP6, LRP-6, low-densit 93.0 7.4 0.00025 43.6 21.5 152 440-603 342-502 (628)
446 4a2l_A BT_4663, two-component 92.9 4.5 0.00015 46.0 20.1 143 440-603 408-566 (795)
447 3das_A Putative oxidoreductase 92.7 5.9 0.0002 41.2 18.8 153 440-595 34-218 (347)
448 3amr_A 3-phytase; beta-propell 92.4 4 0.00014 42.7 16.9 139 459-601 98-255 (355)
449 2ism_A Putative oxidoreductase 92.0 2.8 9.6E-05 43.2 15.4 148 440-597 33-221 (352)
450 2xbg_A YCF48-like protein; pho 92.0 6.1 0.00021 39.9 17.7 147 440-603 165-316 (327)
451 3a9g_A Putative uncharacterize 91.8 2.7 9.4E-05 43.4 14.9 151 440-597 31-216 (354)
452 1k3i_A Galactose oxidase precu 91.7 0.55 1.9E-05 52.7 10.1 117 442-567 190-325 (656)
453 2g8s_A Glucose/sorbosone dehyd 91.3 3 0.0001 43.0 14.6 151 440-596 20-215 (353)
454 4fdw_A Leucine rich hypothetic 91.3 0.15 5.2E-06 54.2 4.7 99 99-206 134-234 (401)
455 3v9f_A Two-component system se 91.0 13 0.00044 42.1 20.8 146 439-601 408-560 (781)
456 3kya_A Putative phosphatase; s 90.1 7.8 0.00027 42.3 17.1 162 440-604 249-470 (496)
457 1k3i_A Galactose oxidase precu 90.0 0.94 3.2E-05 50.8 10.0 126 460-598 369-530 (656)
458 3v9f_A Two-component system se 89.8 12 0.0004 42.5 19.1 146 440-603 365-519 (781)
459 2xbg_A YCF48-like protein; pho 89.7 16 0.00053 36.8 18.2 145 440-601 124-271 (327)
460 1n7d_A LDL receptor, low-densi 89.6 0.44 1.5E-05 54.3 6.9 149 440-602 455-607 (699)
461 2xzh_A Clathrin heavy chain 1; 88.9 24 0.00084 36.7 20.6 120 442-580 71-202 (365)
462 3amr_A 3-phytase; beta-propell 88.7 14 0.00048 38.5 17.0 139 450-599 40-200 (355)
463 3qqz_A Putative uncharacterize 88.2 14 0.00048 36.5 16.1 110 480-600 24-143 (255)
464 3ei3_A DNA damage-binding prot 87.5 16 0.00053 44.2 18.7 147 440-603 834-993 (1158)
465 1tl2_A L10, protein (tachylect 86.4 14 0.00049 36.2 14.4 144 440-596 43-199 (236)
466 1bpo_A Protein (clathrin); cla 86.3 31 0.0011 37.3 18.1 123 442-583 70-204 (494)
467 4fdw_A Leucine rich hypothetic 84.1 0.57 1.9E-05 49.7 3.5 34 148-183 249-282 (401)
468 2xzh_A Clathrin heavy chain 1; 82.5 50 0.0017 34.4 17.4 132 459-595 179-319 (365)
469 2ism_A Putative oxidoreductase 80.6 27 0.00094 35.6 14.8 155 440-599 137-336 (352)
470 2be1_A Serine/threonine-protei 80.6 3 0.0001 43.3 7.4 114 451-575 11-140 (339)
471 1bpo_A Protein (clathrin); cla 80.4 69 0.0024 34.6 18.8 150 440-595 153-318 (494)
472 3sre_A PON1, serum paraoxonase 75.4 34 0.0012 35.5 13.6 114 438-564 165-297 (355)
473 2wg3_C Hedgehog-interacting pr 72.8 34 0.0012 36.7 13.3 115 440-555 16-159 (463)
474 2g8s_A Glucose/sorbosone dehyd 71.3 92 0.0031 31.6 17.3 69 526-595 262-339 (353)
475 4fs7_A Uncharacterized protein 71.2 3.2 0.00011 43.1 4.6 32 147-180 343-374 (394)
476 3b7f_A Glycosyl hydrolase, BNR 70.9 95 0.0032 31.6 16.3 70 440-510 57-143 (394)
477 3ei3_A DNA damage-binding prot 70.1 1.6E+02 0.0054 35.5 19.4 128 462-602 494-629 (1158)
478 3a9g_A Putative uncharacterize 67.0 49 0.0017 33.7 12.6 101 483-596 29-152 (354)
479 3das_A Putative oxidoreductase 66.9 87 0.003 32.3 14.3 106 482-597 31-158 (347)
480 1cru_A Protein (soluble quinop 65.6 47 0.0016 35.3 12.4 104 484-597 28-162 (454)
481 2xn4_A Kelch-like protein 2; s 64.6 68 0.0023 31.0 12.6 106 449-567 108-231 (302)
482 4gt6_A Cell surface protein; l 64.4 6.9 0.00024 40.5 5.4 56 146-206 310-365 (394)
483 2vpj_A Kelch-like protein 12; 64.0 97 0.0033 29.8 13.6 106 449-567 112-233 (301)
484 4h09_A Hypothetical leucine ri 63.7 4.2 0.00014 41.7 3.6 73 128-205 266-340 (379)
485 2vpj_A Kelch-like protein 12; 62.8 1.1E+02 0.0038 29.4 14.1 106 449-567 62-186 (301)
486 1zgk_A Kelch-like ECH-associat 61.0 56 0.0019 31.9 11.3 106 449-567 121-242 (308)
487 4fs7_A Uncharacterized protein 59.8 8.6 0.0003 39.8 5.1 72 128-205 300-373 (394)
488 3rfe_A Platelet glycoprotein I 58.7 5.8 0.0002 34.9 3.0 34 127-161 33-68 (130)
489 1pgv_A TMD-1, tropomodulin TMD 58.3 11 0.00037 36.0 5.0 81 81-162 22-112 (197)
490 1sqj_A OXG-RCBH, oligoxylogluc 58.1 2.1E+02 0.007 32.6 16.8 149 439-597 16-189 (789)
491 3ii7_A Kelch-like protein 7; p 58.0 84 0.0029 30.4 11.9 133 449-600 101-258 (306)
492 3ii7_A Kelch-like protein 7; p 57.1 93 0.0032 30.1 12.1 106 449-567 55-180 (306)
493 4gq2_M Nucleoporin NUP120; bet 56.1 36 0.0012 40.1 10.1 39 439-478 237-275 (950)
494 2xn4_A Kelch-like protein 2; s 55.4 1.3E+02 0.0043 29.0 12.7 107 449-567 61-184 (302)
495 1tl2_A L10, protein (tachylect 54.2 22 0.00076 34.9 6.5 138 452-602 6-156 (236)
496 3s25_A Hypothetical 7-bladed b 53.2 1.8E+02 0.0062 28.9 13.7 129 445-599 60-205 (302)
497 1xi4_A Clathrin heavy chain; a 50.9 1.4E+02 0.0049 36.9 14.0 124 458-586 177-309 (1630)
498 2wg3_C Hedgehog-interacting pr 50.0 2.3E+02 0.008 30.1 14.6 107 484-598 15-158 (463)
499 3f7f_A Nucleoporin NUP120; nuc 49.2 95 0.0032 35.4 11.6 70 440-515 224-306 (729)
500 2cn3_A Xyloglucanase, beta-1,4 44.7 3.7E+02 0.013 30.1 16.0 64 439-502 24-91 (737)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.91 E-value=4e-23 Score=217.04 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|++||+++++.+..+. +|.+.|.+++|+|++..+++|||.|++|++||++.+
T Consensus 130 V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---- 202 (344)
T 4gqb_B 130 VSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYR--AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP---- 202 (344)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS----
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CcCCceEEEEecCCCCCceeeecccccccccccccc----
Confidence 88999999 99999999999999999999999888665 999999999999977678999999999999999984
Q ss_pred ccccCCcceEEee---cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY---DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~---~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+...+. +...+.+++|+|++ .++++|+.||+|++||+++++++..+. +|...|++++|+|++..++++
T Consensus 203 ------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 203 ------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ------SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEE
T ss_pred ------ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEE
Confidence 3444443 23458999999965 689999999999999999999999999 899999999999999778999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 276 gs~D~~i~v 284 (344)
T 4gqb_B 276 LSEDCSLAV 284 (344)
T ss_dssp EETTSCEEE
T ss_pred EeCCCeEEE
Confidence 999999986
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=1.6e-22 Score=206.83 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++++|+.||+|++||++++..+..+. +|..+|.+++|+| ++.+|++|+.|++|++||+.+
T Consensus 16 V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~----- 86 (304)
T 2ynn_A 16 VKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNT----- 86 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCC-----
Confidence 88999999 99999999999999999999998887665 8999999999999 678999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+ ...|.+++|+|+++++++|+.|++|++||++++.. ...+. +|...|++++|+|.+..++++|+
T Consensus 87 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 87 -----GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEE
T ss_pred -----CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEe
Confidence 345667775 46699999999999999999999999999998744 55666 89999999999997666799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 161 ~D~~v~i 167 (304)
T 2ynn_A 161 LDRTVKV 167 (304)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999985
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=210.07 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.+..++++|+.||+|++||+++++....+....|...+.+++|+|.++.++++|+.||+|++||+++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~----- 246 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS----- 246 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-----
Confidence 889999995557899999999999999999998887766677778999999998888999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.+ ...|++++|+|++ .++++||.|++|++||+++++.+. +. +|.+.|++++|+|+++++++|||
T Consensus 247 -----~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 247 -----TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-AHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -----CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-CCCCCEEEEEEeCCCCeEEEEEc
Confidence 456777775 4669999999998 589999999999999999987654 55 79999999999999999999999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 320 ~D~~v~~ 326 (344)
T 4gqb_B 320 WDHQVVH 326 (344)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9999985
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.1e-22 Score=206.31 Aligned_cols=149 Identities=19% Similarity=0.338 Sum_probs=136.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++|+|+.||.|++||+++++.+..+. +|...|.+++|+| ++.+|++|+.||+|++||++..
T Consensus 167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~---- 238 (321)
T 3ow8_A 167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA---- 238 (321)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC----
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--ccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc----
Confidence 78999999 99999999999999999999999887665 8999999999999 6789999999999999999873
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....++.+| ..|.+++|+|++.++++|+.|++|++||+++++++..+. +|...|++++|+|++.. +++++.
T Consensus 239 ------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~-l~s~~~ 310 (321)
T 3ow8_A 239 ------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSK-IVSVGD 310 (321)
T ss_dssp ------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSE-EEEEET
T ss_pred ------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCE-EEEEeC
Confidence 456666654 569999999999999999999999999999999999998 79999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 311 d~~i~v 316 (321)
T 3ow8_A 311 DQEIHI 316 (321)
T ss_dssp TCCEEE
T ss_pred CCeEEE
Confidence 999985
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.89 E-value=6e-22 Score=205.70 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ++.++++|+.||+|++||++++.....+. +|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 187 v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~----- 257 (340)
T 1got_B 187 VMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFP-NGNAFATGSDDATCRLFDLRA----- 257 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEc--CCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC-----
Confidence 88999999 89999999999999999999998887665 8999999999999 678999999999999999987
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..+.+. ..|.+++|+|++.++++|+.|+.|++||+++++.+..+. +|...|++++|+|++.+ ++||
T Consensus 258 -----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~-l~s~ 330 (340)
T 1got_B 258 -----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMA-VATG 330 (340)
T ss_dssp -----TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSC-EEEE
T ss_pred -----CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCE-EEEE
Confidence 3445556543 369999999999999999999999999999999999998 89999999999999985 8999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
|.|++|+.
T Consensus 331 s~D~~i~i 338 (340)
T 1got_B 331 SWDSFLKI 338 (340)
T ss_dssp ETTSCEEE
T ss_pred cCCccEEe
Confidence 99999985
No 6
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.89 E-value=1.6e-22 Score=217.15 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=133.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+|++++|||.++++||+|+.||+|+|||+.++.....+...+|.+.|++++|+|.++.+|+|||.||+|++||++..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~--- 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--- 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---
Confidence 48999999988899999999999999999988776666777999999999999977889999999999999999862
Q ss_pred cccccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
....+. + ...+.+++|+|++.++++|+.||.|++||++. +.+..+. +|...|++++|+|++..+++
T Consensus 198 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 198 --------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp --------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTCSSEEE
T ss_pred --------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCCceEEE
Confidence 222232 2 23478999999999999999999999999974 5566777 79999999999999998999
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|++
T Consensus 268 s~s~d~~v~i 277 (435)
T 4e54_B 268 TASVDQTVKI 277 (435)
T ss_dssp EEETTSBCCE
T ss_pred EecCcceeeE
Confidence 9999999875
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.88 E-value=8.5e-22 Score=210.55 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=136.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++++|+.||+|+|||+.+++....+. +|.+.|.+++|+| ++.+|+|||.||+|++||+..
T Consensus 111 V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~----- 181 (410)
T 1vyh_C 111 VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG----- 181 (410)
T ss_dssp EEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS-----
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-----
Confidence 88999999 89999999999999999999998887665 9999999999998 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++.++.+ ...|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|.+++|+|++. ++++|+.
T Consensus 182 -----~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~-~l~s~s~ 254 (410)
T 1vyh_C 182 -----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGT-LIASCSN 254 (410)
T ss_dssp -----SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred -----CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCCCC-EEEEEcC
Confidence 345666665 4569999999999999999999999999999999999999 7999999999999998 5899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|++
T Consensus 255 D~~v~v 260 (410)
T 1vyh_C 255 DQTVRV 260 (410)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999985
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.88 E-value=2.4e-21 Score=198.04 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++.++++|+.||+|++||++++... ..+ .+|...|.+++|+|.++..|+||+.|++|++||++..
T Consensus 100 v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~--- 173 (304)
T 2ynn_A 100 IRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--- 173 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEE--CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS---
T ss_pred EEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhh--cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---
Confidence 88999999 8899999999999999999877443 333 4999999999999977789999999999999999873
Q ss_pred cccccCCcceEEee-c-CCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-D-FEQLTSVHVNS--TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~-~~~V~sV~~sp--~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+...+. + ...+..++|+| ++.++++|+.|++|++||+++++.+..+. +|...|++++|+|+++ +++
T Consensus 174 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~ 244 (304)
T 2ynn_A 174 -------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-III 244 (304)
T ss_dssp -------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS-EEE
T ss_pred -------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCC-EEE
Confidence 2333333 3 36699999987 56799999999999999999999999999 8999999999999998 589
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++||.
T Consensus 245 s~s~Dg~i~i 254 (304)
T 2ynn_A 245 SGSEDGTLKI 254 (304)
T ss_dssp EEETTSCEEE
T ss_pred EEcCCCeEEE
Confidence 9999999985
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.88 E-value=7.7e-21 Score=193.23 Aligned_cols=149 Identities=16% Similarity=0.343 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++|+|+.||.|++||..+++....+. +|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 26 v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~----- 96 (312)
T 4ery_A 26 VSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS----- 96 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC-----
Confidence 88999999 99999999999999999999988877655 8999999999999 678999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+.. ...|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|.+++|+|++. ++++|+.
T Consensus 97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~ 169 (312)
T 4ery_A 97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGS-LIVSSSY 169 (312)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEET
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCC-EEEEEeC
Confidence 345667765 4669999999999999999999999999999999999998 7999999999999988 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 170 d~~i~~ 175 (312)
T 4ery_A 170 DGLCRI 175 (312)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999875
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.88 E-value=3.6e-21 Score=200.49 Aligned_cols=154 Identities=14% Similarity=0.227 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|++||..++.......+.+|.+.|.+++|+| ++.+|++|+.|++|++||++....
T Consensus 64 v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~-- 139 (345)
T 3fm0_A 64 VRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDE-- 139 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSC--
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCC--
Confidence 88999999 99999999999999999998775433334559999999999999 678999999999999999987421
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..++..+.. ...|.+++|+|++.++++|+.|++|++||.++++. ...+. +|...|++++|+|++.+ +++|
T Consensus 140 -----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~-l~s~ 212 (345)
T 3fm0_A 140 -----YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQR-LASC 212 (345)
T ss_dssp -----EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSE-EEEE
T ss_pred -----eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCE-EEEE
Confidence 234455554 46699999999999999999999999999998753 46777 79999999999999984 8999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||+
T Consensus 213 s~D~~v~i 220 (345)
T 3fm0_A 213 SDDRTVRI 220 (345)
T ss_dssp ETTSCEEE
T ss_pred eCCCeEEE
Confidence 99999985
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.87 E-value=2.2e-21 Score=203.82 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|++||+++++.+..+. +|.+.|.+++|+|.+...+++++.||+|++||++.+.
T Consensus 142 V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--- 215 (357)
T 4g56_B 142 VKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--- 215 (357)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS---
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc---
Confidence 88999999 99999999999999999999999887665 8999999999999766789999999999999998843
Q ss_pred ccccCCcceEEe---ecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATY---YDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~---~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
+...+ .+...+.+++|+|++ .++++|+.|+.|++||+++++.+..+. +|...|++++|+|++..++|+
T Consensus 216 -------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 216 -------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp -------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEE
T ss_pred -------eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEE
Confidence 22222 234569999999985 689999999999999999999999999 799999999999999778999
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 288 gs~D~~i~i 296 (357)
T 4g56_B 288 ISEDCTVAV 296 (357)
T ss_dssp EETTSCEEE
T ss_pred EeCCCEEEE
Confidence 999999985
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.87 E-value=8.7e-21 Score=198.74 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+|. +++++++|+.||+|++||+++++.+..+. +|...|.+++|+| ++..|++|+.|++|++||++..
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~--- 272 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE--THESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD--- 272 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC---
Confidence 778899884 46899999999999999999999887665 8999999999999 6789999999999999999873
Q ss_pred cccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+..+..+ ..+.+++|+|++.++++|+.|++|++||+++++.+..+. +|.+.|++++|+|++.+ +++
T Consensus 273 -------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~-l~s 343 (354)
T 2pbi_B 273 -------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTA-FCS 343 (354)
T ss_dssp -------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSC-EEE
T ss_pred -------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCE-EEE
Confidence 344455432 358999999999999999999999999999999999998 89999999999999985 899
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
||.|++||+
T Consensus 344 gs~D~~v~v 352 (354)
T 2pbi_B 344 GSWDHTLRV 352 (354)
T ss_dssp EETTSEEEE
T ss_pred EcCCCCEEe
Confidence 999999985
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.8e-21 Score=196.30 Aligned_cols=154 Identities=16% Similarity=0.265 Sum_probs=124.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|++++|+| +++++|+|+.||+|+|||.+.. +.... +.+|.+.|.+++|+| ++.+|+|||.|++|++||+
T Consensus 61 v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI--IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEE--EC----CEEEEEECT-TSCEEEEEETTSCEEEEEC
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEE--EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEec
Confidence 88999999 8999999999999999998532 23333 459999999999999 6789999999999999999
Q ss_pred CCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+..... ..++..+.+ ...|.+++|+|++.++++|+.|++|++||.+++ +++..+. +|...|++++|+|++
T Consensus 137 ~~~~~~------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 137 DESGEE------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTE 209 (330)
T ss_dssp CTTCCC------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSS
T ss_pred cCCCCC------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCC
Confidence 642110 234566665 466999999999999999999999999999877 5678888 899999999999984
Q ss_pred -CeEEEEEeCCCeEEE
Q 035500 590 -PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -~~LLaTgS~DgtIRc 604 (606)
...+++|+.|++||+
T Consensus 210 ~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRV 225 (330)
T ss_dssp SSCEEEEEETTSCEEE
T ss_pred CeeEEEEEeCCCeEEE
Confidence 236899999999985
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=199.11 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=130.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| ++++||+|+.||+|+|||.+++..... ....+|.+.|.+++|+| ++.+|++|+.|++|++||+....
T Consensus 19 v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~-- 94 (345)
T 3fm0_A 19 CWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD-- 94 (345)
T ss_dssp EEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC---
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC--
Confidence 78999999 999999999999999999988764432 22358999999999999 67899999999999999988732
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK---PLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k---~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
..++.++.+ ..+|.+++|+|++++|++|+.|++|++||++++. .+..+. +|...|++++|+|++. +++
T Consensus 95 ------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~ 166 (345)
T 3fm0_A 95 ------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQE-LLA 166 (345)
T ss_dssp ------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSSS-CEE
T ss_pred ------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCCC-EEE
Confidence 234566765 4669999999999999999999999999998764 355666 7999999999999998 489
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|+.
T Consensus 167 s~s~d~~i~~ 176 (345)
T 3fm0_A 167 SASYDDTVKL 176 (345)
T ss_dssp EEETTSCEEE
T ss_pred EEeCCCcEEE
Confidence 9999999975
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.87 E-value=1.2e-20 Score=199.88 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++|+|+.||+|+|||+++++....+. +|...|.+++|+| ++.+|++|+.|++|++||+++
T Consensus 126 v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~----- 196 (393)
T 1erj_A 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT----- 196 (393)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEc--cCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC-----
Confidence 78999999 99999999999999999999998877655 9999999999999 668999999999999999988
Q ss_pred ccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV~fsP~g~~L 592 (606)
..+...+.++..+.+++|+| ++.++++|+.|++|++||+++++.+..+. .+|...|++++|+|++.+
T Consensus 197 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~- 270 (393)
T 1erj_A 197 -----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS- 270 (393)
T ss_dssp -----TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-
T ss_pred -----CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-
Confidence 34566777888899999999 78999999999999999999998877662 269999999999999985
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|+.
T Consensus 271 l~s~s~d~~v~~ 282 (393)
T 1erj_A 271 VVSGSLDRSVKL 282 (393)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEEeCCCEEEE
Confidence 789999999985
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.87 E-value=1.4e-20 Score=193.79 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||+|++||+++++....+. +|.+.|.+++|+| ++.+++||+.|++|++||++.
T Consensus 68 v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~----- 138 (319)
T 3frx_A 68 VQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFV--GHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG----- 138 (319)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-----
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEc--cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 9999999999998 678999999999999999975
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccC------CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNST------DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~------g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.++.++. |...|.+++|+|. +..+++++.|++|++||+++.+....+. +|...|++++|+|++. +
T Consensus 139 ------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~ 210 (319)
T 3frx_A 139 ------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGT-L 210 (319)
T ss_dssp ------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSS-E
T ss_pred ------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCC-E
Confidence 2455555 4566999999985 3489999999999999999999988888 7999999999999998 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|++
T Consensus 211 l~s~~~dg~i~i 222 (319)
T 3frx_A 211 IASAGKDGEIML 222 (319)
T ss_dssp EEEEETTCEEEE
T ss_pred EEEEeCCCeEEE
Confidence 899999999985
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=195.16 Aligned_cols=149 Identities=13% Similarity=0.230 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+++++....+. .|...|.+++|+| ++.+|++|+.||+|++||+++
T Consensus 125 ~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~--~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~----- 195 (321)
T 3ow8_A 125 AWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD--TRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT----- 195 (321)
T ss_dssp CCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE--CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec--CCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----
Confidence 67889999 99999999999999999999988876655 7888999999999 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.+ ..+|.+++|+|+++++++|+.|++|++||+++++.+..+. +|...|++++|+|++.+ +++|+.
T Consensus 196 -----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~-l~s~s~ 268 (321)
T 3ow8_A 196 -----GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTH-FVSSSS 268 (321)
T ss_dssp -----TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSE-EEEEET
T ss_pred -----CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCE-EEEEeC
Confidence 456677775 4669999999999999999999999999999999999998 79999999999999985 889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|++
T Consensus 269 D~~v~i 274 (321)
T 3ow8_A 269 DKSVKV 274 (321)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999985
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.86 E-value=1.5e-20 Score=200.96 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-------------------CCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-------------------PSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-------------------~~~LaS 500 (606)
|++++|+| ++.++++|+.||+|++||+.+++....+. +|...|.+++|+|.. +.++++
T Consensus 237 v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 237 VRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 78899999 99999999999999999999988877654 899999999999842 568999
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
|+.|++|++||++. ..++.++.+| ..|.+++|+|++.++++|+.|++|++||+++++.+..+. +|...
T Consensus 314 gs~D~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~ 382 (410)
T 1vyh_C 314 GSRDKTIKMWDVST----------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHF 382 (410)
T ss_dssp EETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSC
T ss_pred EeCCCeEEEEECCC----------CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCc
Confidence 99999999999998 4567777754 569999999999999999999999999999999999998 89999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++++ ++|||.|++||.
T Consensus 383 v~~l~~~~~~~~-l~sgs~D~~i~v 406 (410)
T 1vyh_C 383 VTSLDFHKTAPY-VVTGSVDQTVKV 406 (410)
T ss_dssp EEEEEECSSSSC-EEEEETTSEEEE
T ss_pred EEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 999999999985 889999999985
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.86 E-value=2.8e-20 Score=194.83 Aligned_cols=151 Identities=14% Similarity=0.249 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe------------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP------------------------------------------ 477 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~------------------------------------------ 477 (606)
|.+++|+| ++.+||+|+.||+|+|||..+++....+.
T Consensus 67 V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 67 VLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 88999999 88999999999999999987765433221
Q ss_pred ----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccC--CCEEE
Q 035500 478 ----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNST--DDQFL 550 (606)
Q Consensus 478 ----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~--g~~La 550 (606)
..+|.+.|.+++|+| ++..+++|+.|++|++||+++ ..++.++.+| ..|.+++|+|. +++++
T Consensus 146 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVES----------GQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp GCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred cceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCC----------CeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 125788899999998 567899999999999999987 3467777754 56999999885 68999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 551 ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 551 Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+.||+|++||+++++.+..+. +|...|++++|+|++. .+++|+.|++||.
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~v~l 266 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGD-AFASGSDDATCRL 266 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCC-EEEEEeCCCeEEE
Confidence 99999999999999999999998 7999999999999998 5899999999985
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.86 E-value=2e-20 Score=190.53 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=128.6
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| .++++||+|+.||+|+|||+++++........+|...|.+++|+|+. +.+|++|+.|++|++||++....
T Consensus 56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 88999986 34899999999999999999887533333345899999999999952 67999999999999999987421
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccC-------------CCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCC
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNST-------------DDQFLASGYSKNVALYDINTEK----PLQLFTDMHREP 579 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~-------------g~~LaSgs~Dg~I~IWDlrt~k----~v~~l~~gH~~~ 579 (606)
.....+. |...|.+++|+|+ +.+|++|+.|++|++||+++++ ....+. +|...
T Consensus 136 --------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~ 206 (297)
T 2pm7_B 136 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 206 (297)
T ss_dssp --------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred --------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCc
Confidence 1123444 4566999999997 4699999999999999999876 556777 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++||.|++|+.
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEE
Confidence 9999999986 457999999999985
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.86 E-value=6.7e-21 Score=200.07 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=134.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+|....++++++.||+|++||+++++....+....|...+.+++|+|.++.+|++|+.|+.|++||++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~----- 258 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN----- 258 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-----
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC-----
Confidence 889999995556899999999999999999988877776678889999999997788999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.++.. ...|++++|+|++ .++++|+.|++|++||+++++.+..+ +|.+.|++++|+|.+..+|+|||
T Consensus 259 -----~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 259 -----PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp -----GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -----CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEc
Confidence 456677775 4669999999997 58999999999999999999887665 59999999999995444799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 332 ~Dg~v~i 338 (357)
T 4g56_B 332 WDHKVLH 338 (357)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9999985
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.86 E-value=2.5e-20 Score=189.74 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=127.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++||+|+.||+|+|||++.+ +....+ .+|.+.|++++|+|. ++.+|+|||.|++|++||++.+.
T Consensus 12 V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 12 IHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEE--ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 88999999 9999999999999999999753 444444 499999999999763 46899999999999999998742
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCCC--
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHHS-- 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~g-- 589 (606)
...+..+. |...|.+++|+|+ +.++++|+.|++|++||++++.. ...+. +|...|++++|+|++
T Consensus 89 --------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 89 --------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIE 159 (297)
T ss_dssp --------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC--
T ss_pred --------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCccc
Confidence 12345555 4566999999998 78999999999999999997642 45566 799999999999973
Q ss_pred ----------CeEEEEEeCCCeEEE
Q 035500 590 ----------PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ----------~~LLaTgS~DgtIRc 604 (606)
..++++|+.|++||.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp ----------CCEEEEEETTSCEEE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEE
Confidence 247999999999985
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.86 E-value=1.4e-20 Score=198.68 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=130.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+|.+++++++|+.||+|++||++. +..+..+. +|.+.|.+++|+| ++.+|+|||.||+|++||++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~--- 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTG--- 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTT---
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCC---
Confidence 788999987899999999999999999974 45555544 9999999999999 6789999999999999999983
Q ss_pred cccccCCcceEEeecC--------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDF--------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT---DMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~--------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~---~gH~~~I~sV~fsP 587 (606)
.++..+..+ ..|.+++|+|+|.++++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|
T Consensus 282 -------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 282 -------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp -------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred -------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 344444421 238999999999999999999999999999998877762 37999999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
++.+ ++|||.|++|+.
T Consensus 355 dg~~-l~sgs~D~~i~i 370 (380)
T 3iz6_a 355 DGSA-LCTGSWDKNLKI 370 (380)
T ss_dssp SSSE-EEEECTTSCEEE
T ss_pred CCCE-EEEeeCCCCEEE
Confidence 9985 899999999985
No 24
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.85 E-value=9.7e-20 Score=185.09 Aligned_cols=150 Identities=18% Similarity=0.299 Sum_probs=134.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+++++.+..+. +|...|.+++|+| ++.++++|+.||+|++||++.
T Consensus 68 v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~----- 138 (312)
T 4ery_A 68 ISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKT----- 138 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-----
T ss_pred eEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----
Confidence 78999999 89999999999999999999999887665 8999999999999 678999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+.. ..+|.+++|+|+++++++|+.|+.|++||+++++.+..+...|...+..++|+|++.+ +++++.
T Consensus 139 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 212 (312)
T 4ery_A 139 -----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATL 212 (312)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEET
T ss_pred -----CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcC
Confidence 345666664 5679999999999999999999999999999999888876567889999999999985 788999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 213 d~~i~i 218 (312)
T 4ery_A 213 DNTLKL 218 (312)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 999875
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.85 E-value=1.1e-19 Score=188.66 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| +++++|+|+.||.|++||+.++.. .....+.+|.+.|.++.|++. ..+++++.|++|++||+++
T Consensus 100 v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~wd~~~--- 173 (340)
T 1got_B 100 VMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIET--- 173 (340)
T ss_dssp EEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEEEETTT---
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEEEECCC---
Confidence 78899999 899999999999999999987532 222234599999999999974 4699999999999999988
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..++.++.+ ...|.+++|+|++.++++|+.|++|++||+++++.+..+. +|...|++++|+|++. .+++|
T Consensus 174 -------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~ 244 (340)
T 1got_B 174 -------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGN-AFATG 244 (340)
T ss_dssp -------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS-EEEEE
T ss_pred -------CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCC-EEEEE
Confidence 356677775 4669999999999999999999999999999999999998 7999999999999998 58999
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++||.
T Consensus 245 s~d~~v~i 252 (340)
T 1got_B 245 SDDATCRL 252 (340)
T ss_dssp ETTSCEEE
T ss_pred cCCCcEEE
Confidence 99999985
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.85 E-value=7.2e-20 Score=189.97 Aligned_cols=147 Identities=8% Similarity=0.101 Sum_probs=127.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| ++.++++|+.||+|++||+++++....+. +|.+.|.+++|+| ++.+|++|+.|++|++||+...
T Consensus 79 V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~---- 150 (343)
T 2xzm_R 79 VSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFV--GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE---- 150 (343)
T ss_dssp EEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEE--CCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSC----
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--CCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCC----
Confidence 88999999 89999999999999999999998887665 9999999999999 6789999999999999999742
Q ss_pred ccccCCcceEEe----ecCCCeEEEEEccCC----------CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 520 ADARGNSSVATY----YDFEQLTSVHVNSTD----------DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~----~~~~~V~sV~~sp~g----------~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
..... .+...|.+++|+|++ .++++++.|++|++|| .+.+....+. +|...|++++|
T Consensus 151 -------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~ 221 (343)
T 2xzm_R 151 -------CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK-AHESNVNHLSI 221 (343)
T ss_dssp -------EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE-CCSSCEEEEEE
T ss_pred -------ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc-CccccceEEEE
Confidence 11122 244669999999986 7999999999999999 4566677787 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.+ +++|+.|++|++
T Consensus 222 s~~g~~-l~sgs~dg~v~i 239 (343)
T 2xzm_R 222 SPNGKY-IATGGKDKKLLI 239 (343)
T ss_dssp CTTSSE-EEEEETTCEEEE
T ss_pred CCCCCE-EEEEcCCCeEEE
Confidence 999985 899999999985
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.9e-20 Score=188.75 Aligned_cols=156 Identities=12% Similarity=0.187 Sum_probs=123.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| + ++|+|+.||+|++||+.++. ....+...+|.+.|.+++|+| ++.+|++|+.|++|++||+.....
T Consensus 17 v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 17 IWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp EEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-----
T ss_pred eeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcC
Confidence 88999998 4 99999999999999998753 333332224999999999999 578999999999999999865211
Q ss_pred CcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. ....++..+.+ ...|.+++|+|++++|++|+.|++|++||++.. +.+..+. +|...|++++|+|++. +
T Consensus 93 ~~---~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 93 RT---FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSS-E
T ss_pred cc---ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCC-E
Confidence 00 00234556664 466999999999999999999999999999532 4566777 7999999999999988 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++||.
T Consensus 168 l~s~s~D~~i~i 179 (330)
T 2hes_X 168 LASSSYDDTVRI 179 (330)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 899999999985
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.85 E-value=2.6e-20 Score=196.51 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC---
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP--- 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~--- 516 (606)
|++++|+| ++++||+|+.||+|+|||..+++....+. +|...|.+++|+| ++.++++|+.|++|++||+....
T Consensus 69 V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 69 VYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCcccc
Confidence 88999999 89999999999999999999988877665 7777888888887 56777777777777777764210
Q ss_pred ---C------C----ccc----------c--------------cCCcceEEe-----e-cCCCeEEEEEcc-CCCEEEEE
Q 035500 517 ---P------K----VAD----------A--------------RGNSSVATY-----Y-DFEQLTSVHVNS-TDDQFLAS 552 (606)
Q Consensus 517 ---~------~----~~~----------l--------------~~~~~i~t~-----~-~~~~V~sV~~sp-~g~~LaSg 552 (606)
. . ... + ....++..+ . |...|.+++|+| +++++++|
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 0 0 000 0 001223333 2 345599999987 67899999
Q ss_pred eCCCcEEEEECC-CCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 553 GYSKNVALYDIN-TEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 553 s~Dg~I~IWDlr-t~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.|++|++||++ .++.+..+. +|...|++++|+|++. .+++||.|++||.
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~-~l~s~s~D~~i~l 275 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQ-RFGTGSDDGTCRL 275 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSS-EEEEECSSSCEEE
T ss_pred ECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCC-eEEEEcCCCeEEE
Confidence 999999999999 457788888 8999999999999998 4899999999986
No 29
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.84 E-value=1.2e-19 Score=182.51 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=129.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++||+|+.||+|++||+.++.. .....+.+|.+.|.+++|+|. ++.+|++|+.||+|++||++...
T Consensus 14 v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 14 VHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred eeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 88999999 999999999999999999987532 122233489999999999985 47899999999999999998753
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce-------------------------
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP------------------------- 568 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~------------------------- 568 (606)
....... ..++..+. +...|.+++|+|+ +.++++++.||.|++||+++++.
T Consensus 93 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 93 EECSGRR-WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp CTTSSCS-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccccccC-cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee
Confidence 2111000 13455565 4567999999999 99999999999999999986542
Q ss_pred -----------------------------------eEEEcCCCCCCeEEEEEeCCCC---eEEEEEeCCCeEEE
Q 035500 569 -----------------------------------LQLFTDMHREPINVAKFSHHSP---LCLLLLHLTTMSRC 604 (606)
Q Consensus 569 -----------------------------------v~~l~~gH~~~I~sV~fsP~g~---~LLaTgS~DgtIRc 604 (606)
+..+. +|...|++++|+|++. .++++|+.|+.|+.
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 33344 6899999999999983 57999999999885
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.84 E-value=8.8e-20 Score=190.52 Aligned_cols=151 Identities=14% Similarity=0.251 Sum_probs=133.8
Q ss_pred eeEEEEcCCCC-CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNP-SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg-~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++ +++|+|+.||+|+|||+.+++....+...+|.+.|.+++|+|.++..|++|+.|++|++||++..
T Consensus 76 v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 151 (383)
T 3ei3_B 76 VTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--- 151 (383)
T ss_dssp EEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---
T ss_pred EEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---
Confidence 88999999 66 99999999999999999998888777766899999999999966689999999999999999862
Q ss_pred cccccCCcceEEeec----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYYD----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+..+.. ...|.+++|+|+++++++|+.|+.|++||+ +++.+..+. +|...|++++|+|+++++++
T Consensus 152 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 152 --------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp --------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEE
T ss_pred --------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEE
Confidence 2333332 256999999999999999999999999999 577888888 79999999999999997899
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|++|++
T Consensus 222 s~~~d~~i~i 231 (383)
T 3ei3_B 222 TSSVDATVKL 231 (383)
T ss_dssp EEETTSEEEE
T ss_pred EEeCCCEEEE
Confidence 9999999985
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.84 E-value=1.2e-19 Score=186.91 Aligned_cols=150 Identities=11% Similarity=0.153 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++|+|.+++++++|+.||+|++||+... ..+.. +.+|...|.+++|+| ++.+++|||.|++|++||+.+
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS--FKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVAT 96 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEE--EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceE--EeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 8899999966799999999999999998642 22333 459999999999998 678999999999999999988
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC---
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP--- 590 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~--- 590 (606)
..++..+.+ ..+|.+++|+|++.++++|+.|++|++||++ ++.+..+. +|...|.+++|+|.+.
T Consensus 97 ----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 97 ----------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp ----------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC-----
T ss_pred ----------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCC
Confidence 346667765 5669999999999999999999999999997 55677777 7999999999999643
Q ss_pred --eEEEEEeCCCeEEE
Q 035500 591 --LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 --~LLaTgS~DgtIRc 604 (606)
..+++|+.|++|+.
T Consensus 165 ~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 165 DSVTIISAGNDKMVKA 180 (319)
T ss_dssp -CCEEEEEETTSCEEE
T ss_pred CccEEEEEeCCCEEEE
Confidence 36899999999985
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.84 E-value=7.4e-20 Score=192.90 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC----eEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG----CVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg----tIklWDl~~~ 515 (606)
|.+++|+| +++++++++.|+ +++|+..++.........+|...|.+++|+| ++..+++++.|+ ++++||+...
T Consensus 179 V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 179 VKDLHFST-DGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp CCEEEECT-TSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred eEEEEEcc-CCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccc
Confidence 88999999 999999998555 7777777777766555668999999999999 668899999888 6888998763
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
... ......+. +..+|++++|+|+|++||+|+.|++|+|||+++++++..+..+|...|++++|+|+|.+ ||
T Consensus 256 ~~~------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~-la 328 (365)
T 4h5i_A 256 NTS------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY-VA 328 (365)
T ss_dssp EEE------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE-EE
T ss_pred eec------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE-EE
Confidence 210 01123344 45679999999999999999999999999999999999876689999999999999984 89
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
|||.|++||.
T Consensus 329 S~S~D~tvrv 338 (365)
T 4h5i_A 329 SVSAANTIHI 338 (365)
T ss_dssp EEETTSEEEE
T ss_pred EEeCCCeEEE
Confidence 9999999996
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.84 E-value=5.1e-20 Score=193.76 Aligned_cols=151 Identities=9% Similarity=0.124 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|++||+.+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||++++
T Consensus 142 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~---- 213 (420)
T 3vl1_A 142 ITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTG---- 213 (420)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT----
T ss_pred cEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCC----
Confidence 88999999 89999999999999999999988877665 9999999999999 6789999999999999999873
Q ss_pred ccccCCcceEEeec-------------------------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYD-------------------------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-------------------------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
.++..+.. ...+.+++|+|+++++++|+.||.|++||+++++.+..+..
T Consensus 214 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 214 ------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp ------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 33444432 13355566688899999999999999999999998888876
Q ss_pred CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|...|++++|+|++..++++|+.|+.|++
T Consensus 288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp TTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 799999999999999867999999999985
No 34
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.84 E-value=6.4e-19 Score=177.29 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=128.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|++++|+| +++++|+|+.||+|++||+++++.+..+. ..+
T Consensus 70 V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 148 (318)
T 4ggc_A 70 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148 (318)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence 88999999 99999999999999999999887765432 235
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccc--------------------------------------
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADA-------------------------------------- 522 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l-------------------------------------- 522 (606)
|...+..+.|.+ .+.++++++.||+|++||++.+.......
T Consensus 149 ~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 149 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 677788888887 56899999999999999998643211000
Q ss_pred -cCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 523 -RGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 523 -~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
..........+...+..+.|+|.++.+++++ .|+.|++||+++++++..+. +|.+.|++++|+|++.+ ++|||.|
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~-l~S~s~D 305 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGAT-VASAAAD 305 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC-EEEEETT
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE-EEEEecC
Confidence 0011112233456688999999998777654 78999999999999999999 89999999999999985 8899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
++||+
T Consensus 306 ~~v~i 310 (318)
T 4ggc_A 306 ETLRL 310 (318)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99985
No 35
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.84 E-value=1.8e-19 Score=202.45 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEE-----------------------------------------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYI----------------------------------------- 476 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~----------------------------------------- 476 (606)
|++++|+| +++++|+|+.||+|+|||+.+++.. ..+
T Consensus 62 v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~ 140 (611)
T 1nr0_A 62 TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140 (611)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC
T ss_pred eEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCc
Confidence 88999999 9999999999999999998643321 111
Q ss_pred -eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC
Q 035500 477 -PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 477 -~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~ 554 (606)
.+.+|.+.|.+++|+|+++..|+|||.|++|++||... .....++.+| ..|.+++|+|+++++++|+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----------~~~~~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT----------BEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC----------CeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence 12357777778888775445789999999999999765 3456677754 56999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEcC------CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQLFTD------MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~l~~------gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++|++||+++++.+..+.. +|.+.|++++|+|++. .+++||.|++||.
T Consensus 211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~l 265 (611)
T 1nr0_A 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKI 265 (611)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEE
Confidence 99999999999998888853 6999999999999998 4899999999985
No 36
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.83 E-value=3.5e-19 Score=188.68 Aligned_cols=163 Identities=20% Similarity=0.281 Sum_probs=131.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.+++|+|.++.++++|+.||+|++||.+++..+..+. ..+|...|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCC
Confidence 77899999889999999999999999999988776552 248999999999998 678999999999999999986
Q ss_pred CCCCcc--cccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC---
Q 035500 515 IPPKVA--DARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHH--- 588 (606)
Q Consensus 515 ~~~~~~--~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~--- 588 (606)
...... ......+..++.+ ...|.+++|+|++.++++|+.|+.|++||.++++++..+. +|...|++++|+|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSL 366 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTT
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCc
Confidence 432110 0011223445554 4569999999999999999999999999999999999999 89999999999874
Q ss_pred --CCeEEEEEeCCCeEEE
Q 035500 589 --SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --g~~LLaTgS~DgtIRc 604 (606)
...+++|||.|++||+
T Consensus 367 ~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CTTCEEEEEEETTSEEEE
T ss_pred CCCCCEEEEECCCCcEEE
Confidence 2347999999999986
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.83 E-value=2.1e-20 Score=192.31 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=127.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++++||+|+.||+|+|||+.++.......+.+|.+.|++++|+|. ++.+|+|||.|++|++||++.+.
T Consensus 16 V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~-- 92 (316)
T 3bg1_A 16 IHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-- 92 (316)
T ss_dssp EEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC--
T ss_pred EEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc--
Confidence 88999999 999999999999999999988764333345599999999999753 46899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCC---
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHS--- 589 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g--- 589 (606)
......+. |...|.+++|+|+ +.++++|+.|++|++||++.+.. ...+. +|...|++++|+|+.
T Consensus 93 ------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 93 ------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCCC-
T ss_pred ------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccCCc
Confidence 12445555 4566999999998 67999999999999999997642 33444 799999999999973
Q ss_pred -------------CeEEEEEeCCCeEEE
Q 035500 590 -------------PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 -------------~~LLaTgS~DgtIRc 604 (606)
...+++|+.|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCE
T ss_pred cccccccccCccccceEEEecCCCeEEE
Confidence 236899999999874
No 38
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.83 E-value=2.3e-19 Score=201.58 Aligned_cols=151 Identities=12% Similarity=0.124 Sum_probs=129.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|..+..+++|+.|++|++||..+++....+. +|.+.|.+++|+| ++.+|+|||.|++|++||+..+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g---- 222 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG---- 222 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC----
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC----
Confidence 88999999434479999999999999999888777654 9999999999999 6789999999999999999874
Q ss_pred ccccCCcceEEe--------ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------------------
Q 035500 520 ADARGNSSVATY--------YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------------------ 573 (606)
Q Consensus 520 ~~l~~~~~i~t~--------~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------ 573 (606)
.++..+ .|...|.+++|+|++.++++++.|++|++||+++++.+..+.
T Consensus 223 ------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 223 ------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp ------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred ------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 334444 356779999999999999999999999999999876543321
Q ss_pred ------------------------CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 ------------------------DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ------------------------~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|...|++++|+|++.+ +++|+.|++||.
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~ 350 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINS 350 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEE
Confidence 279999999999999985 889999999985
No 39
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.83 E-value=7e-19 Score=187.59 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=125.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------------ccC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP---------------------------------------SIG 480 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~---------------------------------------~~g 480 (606)
|++++|+| +++++|+|+.||+|+|||+++++.+..+. +.+
T Consensus 150 V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 150 ISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 88999999 99999999999999999999887655432 124
Q ss_pred CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC---------C----cc-----c---------------------
Q 035500 481 GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP---------K----VA-----D--------------------- 521 (606)
Q Consensus 481 H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~---------~----~~-----~--------------------- 521 (606)
|...+..+.|.| .+..+++++.|+.+++||...+.. . +. +
T Consensus 229 h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 229 HSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred cccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 555666666666 456788888888888888754310 0 00 0
Q ss_pred ccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 522 ARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 522 l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.....+...+.++..+.++.|+|+++.+++++ .|+.|++||+++++++..+. +|.+.|++++|+|+|.+ ++|||.|
T Consensus 308 ~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~-l~S~s~D 385 (420)
T 4gga_A 308 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGAT-VASAAAD 385 (420)
T ss_dssp TTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSC-EEEEETT
T ss_pred CCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCE-EEEEecC
Confidence 00123344555677899999999999887765 68999999999999999999 89999999999999985 8899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
++||.
T Consensus 386 ~tvri 390 (420)
T 4gga_A 386 ETLRL 390 (420)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 99985
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.83 E-value=5.5e-19 Score=183.29 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=126.2
Q ss_pred eeEEEE-----cCCCCCEEEEEeCCCcEEEEECCCCce-----EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEY-----NPSNPSLMAFGTLDGEVIVINHENGNV-----ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slaf-----sP~dg~~LaSGs~DGtVrIWDi~tg~~-----v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
|++++| +|.++.+||+|+.||+|++||+.++.. .....+.+|...|.+++|+| ++.+++|||.|++|++
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRL 102 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEE
Confidence 889999 666889999999999999999875421 12223459999999999998 6689999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE-cCCCCCCeEEEEEeC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF-TDMHREPINVAKFSH 587 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l-~~gH~~~I~sV~fsP 587 (606)
||+++ ...+..+.+ ...|.+++|+|+++++++|+.|++|++||++........ ..+|...|.+++|+|
T Consensus 103 wd~~~----------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 103 WDLRT----------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTS----------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EECCC----------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 99998 345667764 566999999999999999999999999999844332222 125899999999999
Q ss_pred CCC---------eEEEEEeCCCeEEE
Q 035500 588 HSP---------LCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~---------~LLaTgS~DgtIRc 604 (606)
++. .++++|+.|++|+.
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred ccccccccCCCCCEEEEEcCCCEEEE
Confidence 872 36899999999985
No 41
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.83 E-value=2.4e-19 Score=180.28 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=129.2
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCc---------eEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEE
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGN---------VACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVR 508 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~---------~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIk 508 (606)
|.+++|+|. +++++++|+.||+|++||+.++. .... ..+|.+.|.+++|+|.. +.++++|+.||+|+
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT--LNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE--ECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee--ecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 889999995 58999999999999999998763 3333 44899999999999942 78999999999999
Q ss_pred EEeCCCCCCCcccc------------------------------------------------cCC--cceEEee-cCCCe
Q 035500 509 LFDLNHIPPKVADA------------------------------------------------RGN--SSVATYY-DFEQL 537 (606)
Q Consensus 509 lWDl~~~~~~~~~l------------------------------------------------~~~--~~i~t~~-~~~~V 537 (606)
+||++......... ... ..+..+. |..+|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 99988654211000 000 1133444 34669
Q ss_pred EEEEEccCC----CEEEEEeCCCcEEEEECCCC----------------------------------------------c
Q 035500 538 TSVHVNSTD----DQFLASGYSKNVALYDINTE----------------------------------------------K 567 (606)
Q Consensus 538 ~sV~~sp~g----~~LaSgs~Dg~I~IWDlrt~----------------------------------------------k 567 (606)
.+++|+|++ +++++|+.||.|++||++++ +
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 999999998 79999999999999999875 5
Q ss_pred eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 ~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+..+. +|...|++++|+|++. ++++|+.|+.|+.
T Consensus 298 ~~~~~~-~h~~~v~~~~~s~~~~-~l~s~~~dg~v~i 332 (351)
T 3f3f_A 298 LLSEHD-DHNGEVWSVSWNLTGT-ILSSAGDDGKVRL 332 (351)
T ss_dssp EEEEEC-TTSSCEEEEEECSSSC-CEEEEETTSCEEE
T ss_pred EEEEEe-cccccEEEEEEcCCCC-EEEEecCCCcEEE
Confidence 566777 7999999999999998 5899999999985
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.82 E-value=4.7e-19 Score=194.54 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=129.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||+|++||.. ++....+. +|...|.+++|+| ++.+|++++.|++|++||...
T Consensus 429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-~~~~~~~~--~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~----- 498 (577)
T 2ymu_A 429 VWGVAFSP-DDQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG----- 498 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETT-SCEEEEEE--CCSSCEEEEEECT-TSCEEEEEETTSEEEEEETTS-----
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECC-CCEEEEEc--CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCC-----
Confidence 78999999 89999999999999999975 56655544 9999999999999 678999999999999999643
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.+ ...|++++|+|+++++++++.|+.|++||. +++.+..+. +|.+.|++++|+|++.+ |+|+|.
T Consensus 499 ------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~-l~s~~~ 569 (577)
T 2ymu_A 499 ------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQT-IASASS 569 (577)
T ss_dssp ------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSC-EEEEET
T ss_pred ------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCE-EEEEeC
Confidence 35666765 466999999999999999999999999995 688888998 89999999999999996 778999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 570 D~~i~~ 575 (577)
T 2ymu_A 570 DKTVKL 575 (577)
T ss_dssp TSCEEE
T ss_pred CCEEEE
Confidence 999985
No 43
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=4.4e-19 Score=187.28 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=132.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-------NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-------~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.+++|+|.+++++|+|+.||+|+|||+.++ +....+ .+|.+.|.+++|+|++...+++|+.||+|++||+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 8899999988899999999999999999887 344444 4899999999999965579999999999999999
Q ss_pred CCCCCCcccccCCcceEEe--e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-eEEEEEeCC
Q 035500 513 NHIPPKVADARGNSSVATY--Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP-INVAKFSHH 588 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~--~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~-I~sV~fsP~ 588 (606)
+. ...+..+ . |...|.+++|+|+++++++++.|+.|++||+++++.+..+..+|.+. +.++.|+|+
T Consensus 162 ~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 162 GT----------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp TT----------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred CC----------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence 98 3456666 4 45679999999999999999999999999999999999883378776 999999999
Q ss_pred CCeEEEEE---eCCCeEEE
Q 035500 589 SPLCLLLL---HLTTMSRC 604 (606)
Q Consensus 589 g~~LLaTg---S~DgtIRc 604 (606)
+. ++++| +.|+.|++
T Consensus 232 ~~-~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 232 GK-ILTTGFSRMSERQVAL 249 (402)
T ss_dssp TE-EEEEEECTTCCEEEEE
T ss_pred Cc-EEEEeccCCCCceEEE
Confidence 87 57788 78998875
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.82 E-value=1.3e-19 Score=194.43 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=126.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+|.++++|++|+.||+|++||++++..........+...+.+++|+| ++.+|++|+.||+|++||++..
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~---- 241 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK---- 241 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC----
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc----
Confidence 88999999889999999999999999998766554444345566788999998 6789999999999999998752
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEE--cCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLF--TDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l--~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+.++. |...|.+++|+|+++ ++++|+.|++|++||+++.+....+ ..+|...|++++|+|++.+ +++
T Consensus 242 -------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s 313 (435)
T 4e54_B 242 -------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLT 313 (435)
T ss_dssp -------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEE
T ss_pred -------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-eEE
Confidence 233444 456799999999985 8899999999999999987654333 2369999999999999985 889
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|++|+.
T Consensus 314 ~~~D~~i~i 322 (435)
T 4e54_B 314 TDQKSEIRV 322 (435)
T ss_dssp EESSSCEEE
T ss_pred EcCCCEEEE
Confidence 999999985
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.82 E-value=7.7e-19 Score=182.29 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=137.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------cCCCCCEEEEEEeeCCCCEEEEEECCCeEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS-----------IGGTNSVLGLCWLKKYPSKLVAGSDSGCVR 508 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~-----------~gH~~~V~~L~fsp~~~~~LaSgS~DgtIk 508 (606)
|.+++|+|.+++++|+|+.||.|++||+.++.....+.. .+|...|.+++|+|.++.++++|+.||+|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 889999998889999999999999999998766544331 259999999999997778999999999999
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+||+.. ...+..+.+...+.++.|+|.+ .++++++.|+.|++||+++++.+..+. +|...|++++|
T Consensus 126 iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~ 194 (408)
T 4a11_B 126 VWDTNT----------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSW 194 (408)
T ss_dssp EEETTT----------TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEE
T ss_pred EeeCCC----------CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEE
Confidence 999998 4567777788889999999965 499999999999999999999999998 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.+++++|+.|+.|++
T Consensus 195 ~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 195 SPRYDYILATASADSRVKL 213 (408)
T ss_dssp CSSCTTEEEEEETTSCEEE
T ss_pred CCCCCcEEEEEcCCCcEEE
Confidence 9999988999999999985
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.3e-20 Score=202.94 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=125.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEE--EeeCCC-CEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLC--WLKKYP-SKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~--fsp~~~-~~LaSgS~DgtIklWDl~~~ 515 (606)
|++++|+| + +.||+|+.||+|++||++++.. ...+ .+|.+.|.+++ |+| ++ .+|+|||.|++|++||++..
T Consensus 269 v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~--~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 269 ITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYD--QVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEE--ECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH
T ss_pred EEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEe--ecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC
Confidence 88999998 4 4899999999999999987643 2333 48999999994 555 54 78999999999999999873
Q ss_pred CCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.+..++.++ ..|.+++|+|++..+++++.|++|++||++++..+..+. +|.+.|++++|+|+++.
T Consensus 344 ----------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~- 411 (524)
T 2j04_B 344 ----------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPM- 411 (524)
T ss_dssp ----------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCB-
T ss_pred ----------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCe-
Confidence 344444433 248899999999999999999999999999999888888 79999999999999985
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++||.|++||+
T Consensus 412 l~Sgs~Dgtv~l 423 (524)
T 2j04_B 412 VLAGSADGSLII 423 (524)
T ss_dssp CEEEETTTEEEC
T ss_pred EEEEECCCEEEE
Confidence 789999999985
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=6.8e-20 Score=190.29 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG--NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg--~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+| +++++|+|+.||.|+|||+.++ +... .+.+|.+.|.+++|+| ++.+|++|+.||+|++||+.....
T Consensus 14 v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 14 SYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHAR--TFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECC--CBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------C
T ss_pred EEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEE--EEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCc
Confidence 78899999 9999999999999999999987 4444 3459999999999999 568999999999999999988431
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK---PLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k---~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..+...+. |...|.+++|+|+++++++|+.|+.|++||+++++ ....+..+|...|++++|+|++. ++
T Consensus 90 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 161 (377)
T 3dwl_C 90 -------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LL 161 (377)
T ss_dssp -------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EE
T ss_pred -------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EE
Confidence 12344444 55679999999999999999999999999999887 47777734999999999999987 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|++|+.
T Consensus 162 ~~~~~d~~i~i 172 (377)
T 3dwl_C 162 AAGCADRKAYV 172 (377)
T ss_dssp EEEESSSCEEE
T ss_pred EEEeCCCEEEE
Confidence 99999999875
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-18 Score=177.65 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=129.6
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+|. +++++++|+.||.|++||+.+++........+|...|.+++|+|.. +.++++++.||+|++||++....
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 889999872 2899999999999999999998744444455899999999999953 68999999999999999988421
Q ss_pred CcccccCCcceEEe-ecCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCC
Q 035500 518 KVADARGNSSVATY-YDFEQLTSVHVNS-------------TDDQFLASGYSKNVALYDINTEK----PLQLFTDMHREP 579 (606)
Q Consensus 518 ~~~~l~~~~~i~t~-~~~~~V~sV~~sp-------------~g~~LaSgs~Dg~I~IWDlrt~k----~v~~l~~gH~~~ 579 (606)
.....+ .+...|.+++|+| ++.++++|+.|+.|++||+++++ ....+. +|...
T Consensus 138 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~ 208 (379)
T 3jrp_A 138 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 208 (379)
T ss_dssp --------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred --------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCc
Confidence 122333 3567799999999 58999999999999999999765 345666 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++++.|+.|++
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 9999999994 457999999999875
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.81 E-value=8e-19 Score=199.60 Aligned_cols=149 Identities=12% Similarity=0.139 Sum_probs=130.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||+|+|||+.++.....+. +|.+.|.+++|+| ++..|+|||.|++|++||....
T Consensus 433 v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~---- 504 (694)
T 3dm0_A 433 VEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFV--GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGE---- 504 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSC----
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEe--CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCC----
Confidence 88999999 99999999999999999999998877665 9999999999999 5688999999999999998652
Q ss_pred ccccCCcceEEe----ecCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATY----YDFEQLTSVHVNSTD--DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~----~~~~~V~sV~~sp~g--~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
...... .|...|.+++|+|++ ..+++|+.|++|++||+++++....+. +|.+.|++++|+|++. ++
T Consensus 505 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~-~l 576 (694)
T 3dm0_A 505 ------CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGS-LC 576 (694)
T ss_dssp ------EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS-EE
T ss_pred ------cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC-EE
Confidence 111111 134569999999986 689999999999999999999999998 7999999999999998 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|++|++
T Consensus 577 ~sg~~Dg~i~i 587 (694)
T 3dm0_A 577 ASGGKDGVVLL 587 (694)
T ss_dssp EEEETTSBCEE
T ss_pred EEEeCCCeEEE
Confidence 99999999985
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-18 Score=178.48 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| +++++|+|+.||.|+|||+..+.......+.+|.+.|++++|+|. ++.+|++|+.||+|++||+..+.
T Consensus 14 v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-- 90 (379)
T 3jrp_A 14 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-- 90 (379)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--
T ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--
Confidence 88999999 899999999999999999984433333344599999999999863 27899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCeEEEEEeCC-----
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKP--LQLFTDMHREPINVAKFSHH----- 588 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~--v~~l~~gH~~~I~sV~fsP~----- 588 (606)
...+..+. +...|.+++|+|+ +.++++++.|+.|++||++++.. ...+. +|...|++++|+|.
T Consensus 91 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 91 ------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEED 163 (379)
T ss_dssp ------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----
T ss_pred ------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCcccccc
Confidence 12445555 4567999999999 89999999999999999998743 44555 69999999999994
Q ss_pred --------CCeEEEEEeCCCeEEE
Q 035500 589 --------SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --------g~~LLaTgS~DgtIRc 604 (606)
+. .+++|+.|+.|+.
T Consensus 164 ~~~~~~~~~~-~l~~~~~dg~i~i 186 (379)
T 3jrp_A 164 GEHNGTKESR-KFVTGGADNLVKI 186 (379)
T ss_dssp ------CTTC-EEEEEETTSCEEE
T ss_pred ccccCCCCCC-EEEEEeCCCeEEE
Confidence 55 6899999999885
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.8e-18 Score=183.02 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=133.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+.+++....+. +|...|.+++|++ ..+++|+.||+|++||++..
T Consensus 137 v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~---- 206 (401)
T 4aez_A 137 VASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIA---- 206 (401)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS----
T ss_pred EEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECC---CEEEEEcCCCCEEEEecccC----
Confidence 88999999 99999999999999999999998887665 9999999999964 69999999999999999863
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe-
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH- 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS- 597 (606)
...+..+. |...|.+++|+|+++++++|+.|+.|++||+++++++..+. +|...|.+++|+|++..++++|+
T Consensus 207 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 207 -----NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp -----SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECC
T ss_pred -----cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecC
Confidence 33455665 45669999999999999999999999999999999999998 79999999999999988999977
Q ss_pred -CCCeEEE
Q 035500 598 -LTTMSRC 604 (606)
Q Consensus 598 -~DgtIRc 604 (606)
.|+.|+.
T Consensus 281 s~d~~i~i 288 (401)
T 4aez_A 281 TMDKQIHF 288 (401)
T ss_dssp TTTCEEEE
T ss_pred CCCCEEEE
Confidence 7998875
No 52
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.81 E-value=7.1e-20 Score=188.31 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=126.2
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| .++++||+|+.||+|++||++++.......+.+|.+.|.+++|+|+. +.+|++|+.|++|++||++....
T Consensus 60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 88999976 35889999999999999999987543333455899999999999953 67899999999999999987321
Q ss_pred CcccccCCcceEEee-cCCCeEEEEEccC-----------------CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCC
Q 035500 518 KVADARGNSSVATYY-DFEQLTSVHVNST-----------------DDQFLASGYSKNVALYDINTE---KPLQLFTDMH 576 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~-~~~~V~sV~~sp~-----------------g~~LaSgs~Dg~I~IWDlrt~---k~v~~l~~gH 576 (606)
......+. |...|.+++|+|+ +.+|++|+.|++|++||++.+ +.+..+. +|
T Consensus 140 -------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h 211 (316)
T 3bg1_A 140 -------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AH 211 (316)
T ss_dssp -------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CC
T ss_pred -------cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cC
Confidence 00112223 3456899999997 368999999999999999865 3566777 79
Q ss_pred CCCeEEEEEeCCC---CeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHS---PLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g---~~LLaTgS~DgtIRc 604 (606)
...|++++|+|++ ..++++||.|++|++
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 9999999999986 247999999999985
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.81 E-value=1.9e-19 Score=186.95 Aligned_cols=153 Identities=8% Similarity=0.019 Sum_probs=119.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| +++++++|+.||+|++||+.++. ........+|...|.+++|+| ++.+|++|+.|++|++||++....
T Consensus 58 v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~- 134 (377)
T 3dwl_C 58 VTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQEND- 134 (377)
T ss_dssp EEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC------
T ss_pred EEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCccc-
Confidence 88999999 89999999999999999999877 222334558999999999999 678999999999999999988421
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeEEEcCCCCC
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT------------------EKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt------------------~k~v~~l~~gH~~ 578 (606)
......+. |...|.+++|+|+++++++++.|++|++||+++ ++.+..+ +|..
T Consensus 135 ------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 206 (377)
T 3dwl_C 135 ------WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGG 206 (377)
T ss_dssp ------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSS
T ss_pred ------ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCc
Confidence 11344555 456799999999999999999999999999963 3445555 6999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++++|+|++.+ +++|+.|++|+.
T Consensus 207 ~v~~~~~sp~~~~-l~~~~~d~~i~i 231 (377)
T 3dwl_C 207 WVHAVGFSPSGNA-LAYAGHDSSVTI 231 (377)
T ss_dssp SEEEEEECTTSSC-EEEEETTTEEC-
T ss_pred eEEEEEECCCCCE-EEEEeCCCcEEE
Confidence 9999999999985 889999999874
No 54
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.81 E-value=1.5e-18 Score=186.07 Aligned_cols=153 Identities=14% Similarity=0.221 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG---NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg---~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|.+++|+|.++.++++|+.||.|++||++++ +....+. +|...|.+++|+|.+...+++|+.||+|++||++..
T Consensus 234 v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~- 310 (430)
T 2xyi_A 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL- 310 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-
T ss_pred EeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-
Confidence 8899999988899999999999999999876 3444443 899999999999976668999999999999999974
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC--------------CceeEEEcCCCCCCe
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT--------------EKPLQLFTDMHREPI 580 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt--------------~k~v~~l~~gH~~~I 580 (606)
..++..+. |...|.+++|+|++. ++++++.|+.|++||++. .+.+..+. +|...|
T Consensus 311 --------~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 381 (430)
T 2xyi_A 311 --------KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKI 381 (430)
T ss_dssp --------TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCE
T ss_pred --------CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCc
Confidence 24566776 457799999999984 799999999999999987 24566666 799999
Q ss_pred EEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 581 NVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 581 ~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++++|+|++++++++++.|+.|++
T Consensus 382 ~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 382 SDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEE
Confidence 999999999988999999999885
No 55
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.81 E-value=1.7e-18 Score=185.69 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce----EE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV----AC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~----v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.+++|+|....++++|+.||+|++||+.++.. .. .....+|...|.+++|+|.++..|++++.||.|++||++.
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 778999994444999999999999999987332 11 1234489999999999997788999999999999999997
Q ss_pred CCCCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 515 IPPKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
... ..++..+. |...|++++|+|++. ++++|+.||.|++||+++ ++++..+. +|...|++++|+|++++
T Consensus 264 ~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 264 NNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNET 335 (430)
T ss_dssp SCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTT
T ss_pred CCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCC
Confidence 421 23455554 456799999999986 799999999999999998 56788888 79999999999999988
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
++++|+.|+.|++
T Consensus 336 ~l~s~~~d~~i~i 348 (430)
T 2xyi_A 336 ILASSGTDRRLHV 348 (430)
T ss_dssp EEEEEETTSCCEE
T ss_pred EEEEEeCCCcEEE
Confidence 9999999999875
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.81 E-value=2.7e-18 Score=174.35 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce---EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV---ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~---v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.++++|||||.||+|+|||+.+++. .....+.+|...|.+++|+| ++.++++|+.|+.|++|+.....
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccc
Confidence 899999996689999999999999999876542 22223459999999999998 67899999999999999987642
Q ss_pred CCccc------------------------------ccC-CcceEE--ee-cCCCeEEEEEccCC--CEEEEEeCCCcEEE
Q 035500 517 PKVAD------------------------------ARG-NSSVAT--YY-DFEQLTSVHVNSTD--DQFLASGYSKNVAL 560 (606)
Q Consensus 517 ~~~~~------------------------------l~~-~~~i~t--~~-~~~~V~sV~~sp~g--~~LaSgs~Dg~I~I 560 (606)
..... +.. ...... .. +...+..++|++++ .++++++.|+.|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 11000 000 000111 11 23558999999875 58899999999999
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
||+++++.+..+. +|.+.|++++|+|++. ++++|+.|++|+.
T Consensus 200 ~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~i 241 (340)
T 4aow_A 200 WNLANCKLKTNHI-GHTGYLNTVTVSPDGS-LCASGGKDGQAML 241 (340)
T ss_dssp EETTTTEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTCEEEE
T ss_pred EECCCCceeeEec-CCCCcEEEEEECCCCC-EEEEEeCCCeEEE
Confidence 9999999999998 7999999999999998 5889999999985
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.4e-19 Score=184.42 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc----CCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI----GGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~----gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl 512 (606)
|.+++|+|..+.++++|+.||.|++||+++++....+... +|...|.+++|+|++..++++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 7899999944899999999999999999999888766532 23789999999997667999999999 9999999
Q ss_pred CCCCCCcccccCCcceEEee--cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 513 NHIPPKVADARGNSSVATYY--DFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
+... .++..+. |...|.+++|+| ++.++++++.|++|++||+++++.+..+. +|...|++++|+|++
T Consensus 248 ~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 248 RNAN---------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEA 317 (416)
T ss_dssp TSTT---------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTC
T ss_pred CCCC---------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCC
Confidence 9842 3445555 556799999999 88999999999999999999999999999 799999999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+.++++++.|+.|+.
T Consensus 318 ~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 318 PDLFACASFDNKIEV 332 (416)
T ss_dssp TTEEEECCSSSEEEE
T ss_pred CCEEEEEecCCcEEE
Confidence 668999999999985
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.2e-18 Score=173.89 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| +++++++|+.||.|++||+.+ +.....+. +|...|.+++|+| ++.+|++++.||.|++||++.
T Consensus 178 ~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~---- 249 (369)
T 3zwl_B 178 ATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST---- 249 (369)
T ss_dssp EEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT----
T ss_pred eeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECC-CCCEEEEecCCceEEEEECCC----
Confidence 78999999 999999999999999999998 66666555 8999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC--------------cEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK--------------NVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg--------------~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
...+..+.+..++.+++|+|++.++++++.++ .+++||.++++.+..+. +|...|++++
T Consensus 250 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~ 322 (369)
T 3zwl_B 250 ------LQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVA 322 (369)
T ss_dssp ------CCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEE
T ss_pred ------CceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEE
Confidence 45677777888899999999999999999988 89999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++. ++++|+.|+.|++
T Consensus 323 ~s~~~~-~l~s~~~dg~v~i 341 (369)
T 3zwl_B 323 ISPQGT-SYASGGEDGFIRL 341 (369)
T ss_dssp ECTTSS-EEEEEETTSEEEE
T ss_pred ECCCCC-EEEEEcCCCeEEE
Confidence 999998 5889999999985
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4e-18 Score=174.06 Aligned_cols=149 Identities=20% Similarity=0.264 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++.+|++++.||+|++||+.+
T Consensus 35 v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~----- 105 (369)
T 3zwl_B 35 LTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN----- 105 (369)
T ss_dssp EEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT-----
T ss_pred EEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 8999999999998 678999999999999999988
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEcCCCCC--CeE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK-----------PLQLFTDMHRE--PIN 581 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k-----------~v~~l~~gH~~--~I~ 581 (606)
...+..+.+..+|.+++|+|++.++++++.+ +.|++||++.+. .+..+. +|.. .+.
T Consensus 106 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 179 (369)
T 3zwl_B 106 -----GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAAT 179 (369)
T ss_dssp -----CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEE
T ss_pred -----CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCcccee
Confidence 4567777788889999999999999999999 999999999764 334444 4666 999
Q ss_pred EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++|+|++.. +++|+.|+.|+.
T Consensus 180 ~~~~~~~~~~-l~~~~~dg~i~i 201 (369)
T 3zwl_B 180 VAGWSTKGKY-IIAGHKDGKISK 201 (369)
T ss_dssp EEEECGGGCE-EEEEETTSEEEE
T ss_pred EEEEcCCCCE-EEEEcCCCEEEE
Confidence 9999999984 788999998875
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.80 E-value=2.6e-18 Score=175.43 Aligned_cols=118 Identities=16% Similarity=0.336 Sum_probs=100.8
Q ss_pred eeEEEEcCCC--CCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSN--PSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~d--g~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.. ++++++|+.||.|++||+.+ +... .....+|.+.|.+++|+| ++.+|++|+.||+|++||+..
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~-- 117 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-PKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSS-- 117 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-EEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT--
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-EEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCC--
Confidence 8899999943 79999999999999999987 4444 223448999999999999 678999999999999999998
Q ss_pred CCcccccCCcceEEeecCCCeEEEEE--ccCCCEEEEEeCCCcEEEEECCCCcee
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHV--NSTDDQFLASGYSKNVALYDINTEKPL 569 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~--sp~g~~LaSgs~Dg~I~IWDlrt~k~v 569 (606)
...+....+...|.+++| +|++.++++++.|+.|++||+++++.+
T Consensus 118 --------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 118 --------NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp --------TEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred --------CCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 345556667788999999 888899999999999999999877543
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.80 E-value=2.5e-18 Score=175.55 Aligned_cols=155 Identities=11% Similarity=0.140 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEE--eeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW--LKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~f--sp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.+++|+| +++++++|+.||.|++||+++++.... .+|...|.+++| +| ++.++++|+.||+|++||++....
T Consensus 89 v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 89 VLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC
T ss_pred EEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE
Confidence 88999999 999999999999999999999887653 379999999999 55 557899999999999999986532
Q ss_pred Cccc---------------------------------------------------------------c------------
Q 035500 518 KVAD---------------------------------------------------------------A------------ 522 (606)
Q Consensus 518 ~~~~---------------------------------------------------------------l------------ 522 (606)
.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 164 MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 1000 0
Q ss_pred --cCC---cceEEeecCC-------------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 523 --RGN---SSVATYYDFE-------------QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 523 --~~~---~~i~t~~~~~-------------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
... ..+..+..+. +|.+++|+|+++++++|+.||.|++||+++++.+..+. +|...|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~ 322 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACC 322 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEE
Confidence 000 1222333332 69999999999999999999999999999999999999 7999999999
Q ss_pred EeCCCCeEEEEEeCCCe
Q 035500 585 FSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 585 fsP~g~~LLaTgS~Dgt 601 (606)
|+|++.+ +++||.|+.
T Consensus 323 ~s~~g~~-l~~~s~d~~ 338 (368)
T 3mmy_A 323 FNHNGNI-FAYASSYDW 338 (368)
T ss_dssp ECTTSSC-EEEEECCCS
T ss_pred ECCCCCe-EEEEecccc
Confidence 9999996 677777653
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.80 E-value=3e-18 Score=178.55 Aligned_cols=150 Identities=16% Similarity=0.221 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC---C---CCCEEEEEEeeCCCCEEEEEECC---CeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG---G---TNSVLGLCWLKKYPSKLVAGSDS---GCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g---H---~~~V~~L~fsp~~~~~LaSgS~D---gtIklW 510 (606)
+.+++|+| ++ ++++|+.||.|++||+++++.+..+. + | ...|.+++|+| ++.+|++++.| |.|++|
T Consensus 189 i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 189 ATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFE--SQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEE--CCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred ceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEe--ccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 78999999 77 99999999999999999988887665 6 8 89999999999 57899999999 999999
Q ss_pred eCCCCCCCcccccCCcceEEee--------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--
Q 035500 511 DLNHIPPKVADARGNSSVATYY--------------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD-- 574 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~--------------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-- 574 (606)
|++.. .++..+. +...|.+++|+|+++++++++.|+.|++||+++++.+..+..
T Consensus 264 d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 264 ETEFG----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp ETTTC----------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred ECCCC----------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 99873 3455555 456799999999999999999999999999999999888871
Q ss_pred ---CC---------------CCCeEEEEEeCCCC---------eEEEEEeCCCeEEE
Q 035500 575 ---MH---------------REPINVAKFSHHSP---------LCLLLLHLTTMSRC 604 (606)
Q Consensus 575 ---gH---------------~~~I~sV~fsP~g~---------~LLaTgS~DgtIRc 604 (606)
+| ...|++++|+|++. .++++|+.|+.|++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 36 89999999999983 46999999999985
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.80 E-value=6.2e-18 Score=171.69 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=128.7
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|++. ...++++|+.|+.|++||..+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||++.
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~---- 246 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE---- 246 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT----
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec--CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc----
Confidence 677889873 34578999999999999999998887655 8999999999999 678999999999999999998
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc--------CCCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT--------DMHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~--------~gH~~~I~sV~fsP~g~ 590 (606)
..++..+.++..|.++.|+|++.++ +++.|+.|++||++++..+..+. .+|...|++++|+|++.
T Consensus 247 ------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 247 ------GKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ------TEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred ------CceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 4577888888899999999977654 56678999999999887765554 25889999999999998
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
+ +++|+.|++||+
T Consensus 320 ~-l~sgs~Dg~v~i 332 (340)
T 4aow_A 320 T-LFAGYTDNLVRV 332 (340)
T ss_dssp E-EEEEETTSCEEE
T ss_pred E-EEEEeCCCEEEE
Confidence 5 889999999985
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.80 E-value=9.8e-19 Score=178.79 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=128.8
Q ss_pred eeEEEEcCCC----CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSN----PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~d----g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| + +.++++|+.||.|++||+.+++.+..+. +|...|.+++|+|.++..|++|+.||+|++||++.
T Consensus 72 v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~- 147 (366)
T 3k26_A 72 FYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT- 147 (366)
T ss_dssp EEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-
Confidence 88999999 5 5699999999999999999999887665 89999999999996778999999999999999987
Q ss_pred CCCcccccCCcceEEe----ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------------------
Q 035500 516 PPKVADARGNSSVATY----YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------------------ 573 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~----~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------------------ 573 (606)
...+..+ .+...|.+++|+|+++++++++.||.|++||+++++....+.
T Consensus 148 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 148 ---------DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp ---------TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred ---------CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 3456665 355679999999999999999999999999999876543332
Q ss_pred ---------CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 ---------DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ---------~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+|...|++++|+ +. ++++++.|+.|++
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~ 255 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVC 255 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEE
T ss_pred eccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEE
Confidence 1399999999999 44 6899999999875
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.80 E-value=1.7e-18 Score=178.17 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN--VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~--~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|++++|+| +++++|+|+.||.|++||..+++ ....+ .+|...|.+++|+| ++.+|++|+.||+|++||+.....
T Consensus 11 i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 11 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHEL--KEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEE--ECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeee--cCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee
Confidence 78999999 99999999999999999999887 55544 48999999999999 678999999999999999977310
Q ss_pred CcccccCCcceEE-eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVAT-YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t-~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..... ..+...|.+++|+|+++++++++.|+.|++||++.++. ...+..+|...|++++|+|++. .+
T Consensus 87 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 157 (372)
T 1k8k_C 87 --------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LL 157 (372)
T ss_dssp --------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EE
T ss_pred --------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EE
Confidence 11222 23566799999999999999999999999999998873 4455447999999999999988 58
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|+.|+.
T Consensus 158 ~~~~~dg~i~~ 168 (372)
T 1k8k_C 158 AAGSCDFKCRI 168 (372)
T ss_dssp EEEETTSCEEE
T ss_pred EEEcCCCCEEE
Confidence 89999999875
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.80 E-value=4.5e-18 Score=173.82 Aligned_cols=153 Identities=11% Similarity=0.183 Sum_probs=129.3
Q ss_pred eeEEEEcCC---CCCEEEEEeCCCcEEEEECCCCceEEEEec---cCCCCCEEEEEEeeCC---CCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPS---NPSLMAFGTLDGEVIVINHENGNVACYIPS---IGGTNSVLGLCWLKKY---PSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~---dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~---~gH~~~V~~L~fsp~~---~~~LaSgS~DgtIklW 510 (606)
|.+++|+|. ....+++++.+|.|++||..+++.+..+.. ..|...|.+++|+|.. +.+|++|+.||+|++|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 889999983 345677777788999999998777655442 2377899999999953 4589999999999999
Q ss_pred eCCCCCCCcccccCCcceEEee-cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEE---cCCCCCCeEEEEE
Q 035500 511 DLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLF---TDMHREPINVAKF 585 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l---~~gH~~~I~sV~f 585 (606)
|+.+ ...+..+. |..+|.+++|+| ++.++++|+.||.|++||+++++.+..+ . +|...|++++|
T Consensus 101 d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~ 169 (366)
T 3k26_A 101 NPIT----------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169 (366)
T ss_dssp CTTT----------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEE
T ss_pred Echh----------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEE
Confidence 9987 34566777 567799999999 8899999999999999999999998888 5 79999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. .+++|+.|+.|+.
T Consensus 170 ~~~~~-~l~~~~~dg~i~i 187 (366)
T 3k26_A 170 DLLGE-KIMSCGMDHSLKL 187 (366)
T ss_dssp CTTSS-EEEEEETTSCEEE
T ss_pred CCCCC-EEEEecCCCCEEE
Confidence 99988 4889999999875
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.80 E-value=6.4e-18 Score=170.70 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=132.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+++++....+. +|.+.|.+++|+| ++..+++++.||.|++||++.
T Consensus 144 i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----- 214 (337)
T 1gxr_A 144 CYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--GHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE----- 214 (337)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee--cccCceEEEEECC-CCCEEEEEecCCcEEEEECCC-----
Confidence 78999999 89999999999999999999998877665 8999999999999 668999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
...+..+.+..++.+++|+|+++++++++.|+.|++||+++++.. .+. +|...|++++|+|++.. +++++.|
T Consensus 215 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~-l~~~~~d 286 (337)
T 1gxr_A 215 -----GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCGKW-FVSTGKD 286 (337)
T ss_dssp -----TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTSSE-EEEEETT
T ss_pred -----CceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECCCCCE-EEEecCC
Confidence 345667777888999999999999999999999999999988764 455 69999999999999985 7899999
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|+.
T Consensus 287 g~i~~ 291 (337)
T 1gxr_A 287 NLLNA 291 (337)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 99875
No 68
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.80 E-value=6.7e-18 Score=170.53 Aligned_cols=150 Identities=10% Similarity=0.148 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||.|++||+.+++........+|...|.+++|+| ++..+++++.||.|++||++.
T Consensus 100 v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~----- 172 (337)
T 1gxr_A 100 IRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN----- 172 (337)
T ss_dssp EEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-----
Confidence 88999999 89999999999999999999887444444558999999999998 678999999999999999987
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+..+. +...|.+++|+|+++++++++.|+.|++||+++++.+..+. |...+.+++|+|++.. +++++.
T Consensus 173 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-l~~~~~ 244 (337)
T 1gxr_A 173 -----QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-LAVGME 244 (337)
T ss_dssp -----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-EEEEET
T ss_pred -----CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-EEEEcC
Confidence 34566666 45669999999999999999999999999999999888876 7889999999999985 788899
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 245 ~~~i~~ 250 (337)
T 1gxr_A 245 SSNVEV 250 (337)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 998875
No 69
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.80 E-value=8.1e-19 Score=185.79 Aligned_cols=160 Identities=16% Similarity=0.306 Sum_probs=123.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-----------eEEEEeccCCC------------CCEEEEEEeeCCC-
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-----------VACYIPSIGGT------------NSVLGLCWLKKYP- 495 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-----------~v~~~~~~gH~------------~~V~~L~fsp~~~- 495 (606)
|++++|+| ++++||+|+.||.|+|||+.++. ....+ .+|. +.|.+++|+|.+.
T Consensus 31 V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 31 ISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE--ECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred EEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc--ccccccccccccccccCceEEEEEcCCCCc
Confidence 88999999 99999999999999999998766 34444 4888 8899999999533
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCc------------------cccc-----------CCcceEEe-e-cCCCeEEEEEcc
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKV------------------ADAR-----------GNSSVATY-Y-DFEQLTSVHVNS 544 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~------------------~~l~-----------~~~~i~t~-~-~~~~V~sV~~sp 544 (606)
..+++|+.||+|++||+....... ..+. ...+...+ . |...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 689999999999999987522100 0000 00111233 2 456799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CceeEE-------EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 545 TDDQFLASGYSKNVALYDINT-EKPLQL-------FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt-~k~v~~-------l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+++++++| .|+.|++||+++ ++.+.. +. +|...|++++|+|++..++++|+.|++|++
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 99999998 799999999994 444443 34 699999999999998557999999999985
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.80 E-value=4.6e-18 Score=174.88 Aligned_cols=154 Identities=8% Similarity=0.006 Sum_probs=132.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++++|+.||.|++||+++++........+|...|.+++|+| ++.++++|+.||.|++||++....
T Consensus 55 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~-- 130 (372)
T 1k8k_C 55 VTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQEND-- 130 (372)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTT--
T ss_pred ccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCc--
Confidence 88999999 99999999999999999999888776666678999999999998 578999999999999999987421
Q ss_pred ccccCCcceEEe-e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECC------------------CCceeEEEcCCCCCC
Q 035500 520 ADARGNSSVATY-Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDIN------------------TEKPLQLFTDMHREP 579 (606)
Q Consensus 520 ~~l~~~~~i~t~-~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr------------------t~k~v~~l~~gH~~~ 579 (606)
......+ . +...|.+++|+|+++++++++.|+.|++||++ .++.+..+. +|...
T Consensus 131 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (372)
T 1k8k_C 131 -----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGW 204 (372)
T ss_dssp -----EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSC
T ss_pred -----ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCe
Confidence 0112233 2 35679999999999999999999999999954 677888888 79999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++. .+++++.|+.|++
T Consensus 205 v~~~~~~~~~~-~l~~~~~d~~i~i 228 (372)
T 1k8k_C 205 VHGVCFSANGS-RVAWVSHDSTVCL 228 (372)
T ss_dssp EEEEEECSSSS-EEEEEETTTEEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCEEEE
Confidence 99999999998 5889999999875
No 71
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.79 E-value=3.8e-18 Score=187.34 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++||.. ++....+. +|...|++++|+| ++.+|++++.|++|++||...
T Consensus 388 v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~----- 457 (577)
T 2ymu_A 388 VRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLT--GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG----- 457 (577)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEECTT-CCEEEEEE--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS-----
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEeCC-CCEEEEec--CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC-----
Confidence 88999999 99999999999999999964 56665554 8999999999999 668999999999999999754
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+. |...|.+++|+|+++++++++.|++|++||. +++.++.+. +|...|++++|+|++.+ +++|+.
T Consensus 458 ------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~-l~s~~~ 528 (577)
T 2ymu_A 458 ------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQT-IASASD 528 (577)
T ss_dssp ------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSC-EEEEET
T ss_pred ------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCE-EEEEEC
Confidence 2455555 4567999999999999999999999999995 688889998 89999999999999985 789999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++||.
T Consensus 529 dg~v~l 534 (577)
T 2ymu_A 529 DKTVKL 534 (577)
T ss_dssp TSEEEE
T ss_pred cCEEEE
Confidence 999985
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.79 E-value=2.8e-18 Score=181.53 Aligned_cols=150 Identities=11% Similarity=0.120 Sum_probs=132.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~~~ 517 (606)
|.+++|+| ++.++++|+.||.|++||+.+++....+. +|...|.+++|+|.+...+++|+ .|+.|++||+++
T Consensus 220 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--- 293 (401)
T 4aez_A 220 VCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--- 293 (401)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEEC--CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---
T ss_pred eeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEec--CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---
Confidence 88999999 99999999999999999999988877654 89999999999997778888876 899999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeE--EEcCCCCCCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQ--LFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~--~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
..++..+.++.+|.+++|+|++..+++++ .||.|++||+++++... .+. +|...|++++|+|++.+ +
T Consensus 294 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~-l 364 (401)
T 4aez_A 294 -------GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRI-L 364 (401)
T ss_dssp -------CCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSE-E
T ss_pred -------CCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCE-E
Confidence 45677888888999999999999999854 89999999999876544 456 79999999999999985 8
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++|+.|+.|+.
T Consensus 365 ~s~~~dg~i~i 375 (401)
T 4aez_A 365 STAASDENLKF 375 (401)
T ss_dssp EEECTTSEEEE
T ss_pred EEEeCCCcEEE
Confidence 89999999975
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.79 E-value=5.5e-18 Score=176.88 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=127.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|.+++++++|+.||+|++||+++..........+|...|.+++|+| ++..|++|+.||+|++||++.
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~----- 194 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDG----- 194 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTS-----
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCC-----
Confidence 88999999778999999999999999999644443333345668899999999 678999999999999999953
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC----CceeEEEcCCCCCCeEEEEEeC-CCCeE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINT----EKPLQLFTDMHREPINVAKFSH-HSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt----~k~v~~l~~gH~~~I~sV~fsP-~g~~L 592 (606)
.++..+. |...|.+++|+|+++ ++++|+.|++|++||+++ +..+..+ +|...|++++|+| ++. .
T Consensus 195 ------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~-~ 265 (383)
T 3ei3_B 195 ------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDST-K 265 (383)
T ss_dssp ------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSC-E
T ss_pred ------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCC-E
Confidence 3566666 456799999999998 999999999999999998 5566666 4899999999999 877 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++++.|+.|++
T Consensus 266 l~~~~~d~~i~i 277 (383)
T 3ei3_B 266 LLTTDQRNEIRV 277 (383)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEEcCCCcEEE
Confidence 889999999885
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.79 E-value=3.9e-18 Score=195.14 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=134.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++.++|+|+.||.|+|||+.+++....+. +|.+.|.+++|+| ++.+|++|+.||+|++||+.++
T Consensus 16 v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~---- 87 (814)
T 3mkq_A 16 VKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---- 87 (814)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC----
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC----
Confidence 88999999 99999999999999999999999888766 8999999999999 6789999999999999999883
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+..+. |...|.+++|+|+++++++++.||+|++||++++ .....+. +|...|.+++|+|.+...+++|+
T Consensus 88 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 88 ------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEE
T ss_pred ------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEe
Confidence 4566666 4567999999999999999999999999999987 5567777 79999999999995445799999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|+.
T Consensus 161 ~dg~v~v 167 (814)
T 3mkq_A 161 LDRTVKV 167 (814)
T ss_dssp TTSEEEE
T ss_pred CCCeEEE
Confidence 9999875
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.79 E-value=2e-18 Score=181.59 Aligned_cols=150 Identities=11% Similarity=0.155 Sum_probs=125.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+....|+| +++++|+|+.||.|++||+++++....+ .+|.+.|.+++|+| ++.+|++|+.||+|++||+...
T Consensus 100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~---- 171 (420)
T 3vl1_A 100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG---- 171 (420)
T ss_dssp EEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEET--TSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC----
T ss_pred eEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeec--ccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC----
Confidence 34446788 9999999999999999999988876644 49999999999999 5789999999999999999873
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeEEEEE-----------
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPINVAKF----------- 585 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~f----------- 585 (606)
..+..+. |...|.+++|+|+++++++++.|++|++||+++++.+..+.. .|...|.+++|
T Consensus 172 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 172 ------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp ------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred ------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 3556666 456799999999999999999999999999999999888872 24455555555
Q ss_pred ----------eCCCCeEEEEEeCCCeEEE
Q 035500 586 ----------SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 ----------sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. .+++|+.|+.|+.
T Consensus 246 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~i 273 (420)
T 3vl1_A 246 STSKKNNLEFGTYGK-YVIAGHVSGVITV 273 (420)
T ss_dssp CCCCCCTTCSSCTTE-EEEEEETTSCEEE
T ss_pred ccCcccceEEcCCCC-EEEEEcCCCeEEE
Confidence 67776 5889999999875
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.79 E-value=5.6e-18 Score=192.65 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce---EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV---ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~---v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+|.++++|+||+.||+|++||+.++.. .....+.+|...|.+++|+| ++.+|+|||.||+|++||+..
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~-- 461 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAA-- 461 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT--
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC--
Confidence 889999997778999999999999999876321 11223459999999999998 678999999999999999987
Q ss_pred CCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc--CCCCCCeEEEEEeCCCC-eE
Q 035500 517 PKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT--DMHREPINVAKFSHHSP-LC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~--~gH~~~I~sV~fsP~g~-~L 592 (606)
...+..+.+ ...|.+++|+|++++++|||.|++|++||........... .+|...|++++|+|++. ..
T Consensus 462 --------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 462 --------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp --------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred --------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 345666664 5669999999999999999999999999987654433322 36899999999999873 47
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++||+
T Consensus 534 l~s~s~d~~v~v 545 (694)
T 3dm0_A 534 IVSASWDKTVKV 545 (694)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEeCCCeEEE
Confidence 899999999985
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.78 E-value=4.7e-18 Score=173.47 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=126.1
Q ss_pred eeEEE----EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFE----YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~sla----fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~ 513 (606)
+.+++ |+| +++++++|+.||.|++||+++++.... ..|...|.+++|+|. ++..+++|+.||.|++||++
T Consensus 167 v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 167 CWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred eEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 67777 677 899999999999999999999887543 378899999999984 56899999999999999998
Q ss_pred CCCCCcccccCCcceEEe-ecCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCC-------------------ceeEEE
Q 035500 514 HIPPKVADARGNSSVATY-YDFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTE-------------------KPLQLF 572 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~-------------------k~v~~l 572 (606)
...... ......+ .+...|.+++|+|++. ++++|+.||.|++||++++ +.+..+
T Consensus 243 ~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 243 TQHPTK-----GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEETTT-----EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred CCCccc-----ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 732100 0011122 3556799999999998 8999999999999999864 346677
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. +|...|++++|+|++..++++|+.|+.|+.
T Consensus 318 ~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 318 T-LSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp E-CCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred c-cCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 7 799999999999999986669999999985
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.5e-18 Score=180.69 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=125.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC---
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN---GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN--- 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t---g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~--- 513 (606)
|++++|+|.++.++|+|+.||+|+|||+.+ +.........+|.+.|.+++|+| ++..|++|+.||+|++||+.
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~ 144 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQ 144 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEecccc
Confidence 889999997788999999999999999876 43221111126899999999998 67899999999999999995
Q ss_pred CCCCCcccccCCcceEEee-----cCCCeEEEE--EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC--CCCCeEEEE
Q 035500 514 HIPPKVADARGNSSVATYY-----DFEQLTSVH--VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--HREPINVAK 584 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-----~~~~V~sV~--~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g--H~~~I~sV~ 584 (606)
.+.. ..... ..++..+. +...+.++. +++++.++++|+.|+.|++||+++++.+..+. + |...|++++
T Consensus 145 ~~~~-~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~ 221 (437)
T 3gre_A 145 QESE-VKFLN-CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE-NSPRHGAVSSIC 221 (437)
T ss_dssp ETTE-EEEEE-EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-CCGGGCCEEEEE
T ss_pred CCce-eeccc-cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-cCCCCCceEEEE
Confidence 2111 00000 11233332 344577777 56788999999999999999999999999998 5 899999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++. .+++|+.|++|++
T Consensus 222 ~s~~~~-~l~s~~~dg~i~i 240 (437)
T 3gre_A 222 IDEECC-VLILGTTRGIIDI 240 (437)
T ss_dssp ECTTSC-EEEEEETTSCEEE
T ss_pred ECCCCC-EEEEEcCCCeEEE
Confidence 999987 5899999999985
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.78 E-value=8.4e-18 Score=177.43 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=131.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+|...+++++|+.||+|++||+++++....+...+|.+.|.+++|+| ++.+|++|+.||.|++||++.
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~----- 207 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK----- 207 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC-----
Confidence 88999999334799999999999999999998887663248999999999999 678999999999999999998
Q ss_pred ccccCCcceEEe-ecC-CC-eEEEEEccCCCEEEEE---eCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATY-YDF-EQ-LTSVHVNSTDDQFLAS---GYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~-~~-V~sV~~sp~g~~LaSg---s~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
...+..+ ..+ .. +.++.|+|++.++++| +.|+.|++||+++++. +......|...|.+++|+|++..+
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 208 -----GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp -----TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred -----CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 3456666 333 33 8999999999999999 7899999999998754 555554578899999999999987
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|+.|++
T Consensus 283 ~~~g~~dg~i~i 294 (402)
T 2aq5_A 283 YLCGKGDSSIRY 294 (402)
T ss_dssp EEEETTCSCEEE
T ss_pred EEEEcCCCeEEE
Confidence 788889999885
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.4e-18 Score=175.48 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| ++.++++|+.||.|++||+.+++....+. +|...|.+++|+|+ + .+++++.||.|++||++.
T Consensus 250 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~----- 319 (425)
T 1r5m_A 250 ISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQ----- 319 (425)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTT-----
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCC-----
Confidence 78999999 88999999999999999999888777664 89999999999994 4 999999999999999987
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--------------------eeEEEcCCCCC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK--------------------PLQLFTDMHRE 578 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k--------------------~v~~l~~gH~~ 578 (606)
...+..+.. ..+|.+++|+|+++++++++.||.|++||+++++ .+..+. +|..
T Consensus 320 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 393 (425)
T 1r5m_A 320 -----NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQD 393 (425)
T ss_dssp -----TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTC
T ss_pred -----CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-Cccc
Confidence 345666664 5679999999999999999999999999999888 888888 6866
Q ss_pred --CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 --PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 --~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.|++++|+|++.+ +++|+.|+.|++
T Consensus 394 ~~~v~~~~~s~~~~~-l~~~~~dg~i~i 420 (425)
T 1r5m_A 394 NDYIFDLSWNCAGNK-ISVAYSLQEGSV 420 (425)
T ss_dssp CCCEEEEEECTTSSE-EEEEESSSCCEE
T ss_pred CCceEEEEccCCCce-EEEEecCceEEE
Confidence 9999999999984 789999998875
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.78 E-value=1.4e-17 Score=200.39 Aligned_cols=149 Identities=18% Similarity=0.171 Sum_probs=135.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|+| +++++|+|+.||+|+|||..+++.+..+. +|.+.|.+++|+| ++.++++|+.||+|++||+.+
T Consensus 618 v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~----- 688 (1249)
T 3sfz_A 618 VYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT----- 688 (1249)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCC-----
Confidence 88999999 99999999999999999999999887665 9999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNST--DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+.++.. ..+|.+++|+|+ +.++++|+.|+.|++||+++++.+..+. +|.+.|++++|+|++. .+++|
T Consensus 689 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~-~l~s~ 761 (1249)
T 3sfz_A 689 -----GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDE-LLASC 761 (1249)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTT-EEEEE
T ss_pred -----CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCC-EEEEE
Confidence 346677765 466999999995 4599999999999999999999999998 7999999999999998 58899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|++|+.
T Consensus 762 s~dg~v~v 769 (1249)
T 3sfz_A 762 SADGTLRL 769 (1249)
T ss_dssp ESSSEEEE
T ss_pred ECCCeEEE
Confidence 99999985
No 82
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.8e-18 Score=191.02 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=124.4
Q ss_pred eeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCceE---------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 440 PRQFEYNPS-----NPSLMAFGTLDGEVIVINHENGNVA---------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~-----dg~~LaSGs~DGtVrIWDi~tg~~v---------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
|.+++|+|. ++.+||+|+.||+|+|||+.++... ....+.+|...|++++|++. ..|++|+.||
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~Dg 287 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNG 287 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTS
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCC
Confidence 789999993 3679999999999999999876421 11234589999999999973 5899999999
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEE--EEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCC--C
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSV--HVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTDMHRE--P 579 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV--~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~--~ 579 (606)
+|++||++.+ ..+...+. |...|.+| +|+|++ .+|+|||.|++|++||+++++.+..+. +|.. .
T Consensus 288 tV~lWD~~~~---------~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~ 357 (524)
T 2j04_B 288 FVAEFDLTDP---------EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSN 357 (524)
T ss_dssp EEEEEETTBC---------SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCS
T ss_pred EEEEEECCCC---------CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCc
Confidence 9999999863 23455565 45679999 567887 899999999999999999988877776 5653 5
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++.. +++++.|++||+
T Consensus 358 v~~v~fsp~~~~-l~s~~~d~tv~l 381 (524)
T 2j04_B 358 LVPVVYCPQIYS-YIYSDGASSLRA 381 (524)
T ss_dssp CCCEEEETTTTE-EEEECSSSEEEE
T ss_pred ccceEeCCCcCe-EEEeCCCCcEEE
Confidence 899999999885 889999999885
No 83
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.77 E-value=8.5e-18 Score=177.30 Aligned_cols=148 Identities=13% Similarity=0.019 Sum_probs=112.2
Q ss_pred eeEEEEcC--CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCC---CCCEEEEEEeeCCCCEE------------EEEE
Q 035500 440 PRQFEYNP--SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGG---TNSVLGLCWLKKYPSKL------------VAGS 502 (606)
Q Consensus 440 V~slafsP--~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH---~~~V~~L~fsp~~~~~L------------aSgS 502 (606)
++.++|+| .++.++|+|+.|++|+|||+++|+.+.++. +| ...+.+++|+| ++.++ +||+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~--g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH--IDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE--CCC---CCCEEEEEEE-TTEEEEEEC------------
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc--CCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccC
Confidence 55666776 466899999999999999999999998876 43 34688889999 45554 6789
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcceEEe-----ecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSSVATY-----YDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~i~t~-----~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
.|++|++||..++ ..+.++ .++ ..+.+.++ ++.++++|+.|++|+|||+++++.+.++. +|
T Consensus 258 ~D~tIklWd~~tg----------k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH 324 (356)
T 2w18_A 258 PVFQLIVINPKTT----------LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP-PV 324 (356)
T ss_dssp CCEEEEEEETTTT----------EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC-CC
T ss_pred CCcEEEEEECCCC----------EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec-CC
Confidence 9999999999874 333333 122 23444444 37899999999999999999999999998 78
Q ss_pred CCCeE-EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPIN-VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~-sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+. +++|+|+|++ +++||.|++||.
T Consensus 325 ~~~vvs~vafSPDG~~-LaSGS~D~TIkl 352 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSH-LLAGQKDGNIFV 352 (356)
T ss_dssp --CCCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred CCCeEEEEEECCCCCE-EEEEECCCcEEE
Confidence 77655 6899999985 889999999985
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=179.12 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=126.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEE-----eccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYI-----PSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~-----~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
|.+++|+| +++++++| .||+|++||+++ +.....+ ...+|...|.+++|+|+++.+|++|+.||+|++||++
T Consensus 180 v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 180 INSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred eEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 88999999 89999999 799999999984 4444332 3558999999999999555899999999999999999
Q ss_pred CCCCCcccccCCcceEEeecCC-------------CeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCC
Q 035500 514 HIPPKVADARGNSSVATYYDFE-------------QLTSVHVNSTDDQFLASGYSKNVALYDINT-EKPLQLFTDMHREP 579 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~-------------~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~ 579 (606)
..... ...+..+..+. .|.+++|+|++.++++++. +.|++||+++ ++++..+. +|...
T Consensus 258 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~ 329 (447)
T 3dw8_B 258 ASALC------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYL 329 (447)
T ss_dssp TCSSS------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGG
T ss_pred CCccc------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccc
Confidence 84321 11245666543 7999999999999999999 9999999997 88888888 67532
Q ss_pred ---------------eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 ---------------INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 ---------------I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..++|+|++.+ +++|+.|+.|+.
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~i 368 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRM 368 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEE
T ss_pred cccccccccccccccceEEEECCCCCE-EEEeccCCEEEE
Confidence 334999999996 699999999985
No 85
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-18 Score=178.38 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=130.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| ++.++++|+.||.|++||+.+ .+.... +.+|.+.|.+++|+|+++.++++|+.||+|++||+...
T Consensus 70 v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 70 FNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp EEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEE--CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred eEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhh--ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 88999999 899999999999999999987 234443 44899999999999965789999999999999999885
Q ss_pred CCCcccccCCcceEE-eecCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcCCC------CCCeEEEEEeC
Q 035500 516 PPKVADARGNSSVAT-YYDFEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTDMH------REPINVAKFSH 587 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t-~~~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH------~~~I~sV~fsP 587 (606)
........ ...... ..+...|.+++|+|+ +.++++++.|+.|++||+++++.+..+. .| ...|++++|+|
T Consensus 147 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 147 TESPSNYT-PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp SSCTTTCC-CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEECS
T ss_pred cccccccc-ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEECC
Confidence 31100000 001111 234567999999999 6899999999999999999999988888 45 78999999999
Q ss_pred CCCeEEEEEeCCC---eEEE
Q 035500 588 HSPLCLLLLHLTT---MSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~Dg---tIRc 604 (606)
++..++++++.|+ .|+.
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCE
T ss_pred CCCCEEEEEECCCCCceEEE
Confidence 9877899999998 7654
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=179.98 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=132.0
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECC--CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHE--NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| ++++| |+|+.||+|+|||+. +++....+...+|...|.+++|+| ++.+|++|+.||.|++|++....
T Consensus 105 v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 105 IRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCC
T ss_pred eEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcc
Confidence 88999999 88885 899999999999999 888887776557889999999999 67899999999999999998753
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccC---CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNST---DDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~---g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.. ..+...+. |...|.+++|+|+ +.++++|+.|++|++||+++++.+..+..+|...|++++|+ ++. +
T Consensus 183 ~~------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~-~ 254 (450)
T 2vdu_B 183 EE------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY-L 254 (450)
T ss_dssp CS------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT-E
T ss_pred cc------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC-E
Confidence 21 00222344 4567999999999 88999999999999999999998887555899999999999 777 5
Q ss_pred EEEEeCCCeEEE
Q 035500 593 LLLLHLTTMSRC 604 (606)
Q Consensus 593 LaTgS~DgtIRc 604 (606)
+++|+.|++|+.
T Consensus 255 l~s~~~d~~v~v 266 (450)
T 2vdu_B 255 LLSAGGDDKIFA 266 (450)
T ss_dssp EEEEESSSEEEE
T ss_pred EEEEeCCCeEEE
Confidence 889999999985
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.77 E-value=8.8e-18 Score=174.96 Aligned_cols=150 Identities=10% Similarity=0.102 Sum_probs=129.8
Q ss_pred eeEEEEc----CCCCCE-EEEEeCCCcEEEEECCC------CceEE-----EEec-----cCCCCCEEEEEEeeCCCCEE
Q 035500 440 PRQFEYN----PSNPSL-MAFGTLDGEVIVINHEN------GNVAC-----YIPS-----IGGTNSVLGLCWLKKYPSKL 498 (606)
Q Consensus 440 V~slafs----P~dg~~-LaSGs~DGtVrIWDi~t------g~~v~-----~~~~-----~gH~~~V~~L~fsp~~~~~L 498 (606)
|.+++|+ | ++++ +++|+.||.|++||+.+ ++.+. .+.. ..|...|.+++|+| ++ .+
T Consensus 124 v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l 200 (397)
T 1sq9_A 124 FWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LI 200 (397)
T ss_dssp EEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EE
T ss_pred EEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eE
Confidence 8899999 8 8889 99999999999999987 55554 4432 46889999999999 45 99
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQFLASGYS---KNVALYDINTEKP 568 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~LaSgs~D---g~I~IWDlrt~k~ 568 (606)
++|+.||.|++||++. ..++..+.. ..+|.+++|+|++.++++++.| +.|++||+++++.
T Consensus 201 ~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 201 ATGFNNGTVQISELST----------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEECTTSEEEEEETTT----------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEECCC----------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999999999997 356667765 6679999999999999999999 9999999999999
Q ss_pred eEEEcCC-------------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 LQLFTDM-------------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 v~~l~~g-------------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..+. + |...|++++|+|++.+ +++|+.|+.|++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i 317 (397)
T 1sq9_A 271 IGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRF 317 (397)
T ss_dssp EEEEC-BC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEE
T ss_pred cceec-cCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEE
Confidence 99998 6 9999999999999985 889999999875
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.2e-18 Score=179.66 Aligned_cols=152 Identities=11% Similarity=0.141 Sum_probs=126.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC---CCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK---YPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~---~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| +++++++|+.||+|++||+++++.+..+.. +|...|.+++|+|. ++.++++|+.||+|++||++.+.
T Consensus 217 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 217 VSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred eEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 88999999 899999999999999999999988876653 67789999988763 45589999999999999998742
Q ss_pred CCcccccCCcceEEee---------------------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q 035500 517 PKVADARGNSSVATYY---------------------------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL 569 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~---------------------------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v 569 (606)
++..+. +...|.+++|+ +++++++|+.|+.|++||+++++..
T Consensus 295 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 295 ----------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp ----------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred ----------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 222222 33458999999 7789999999999999999999887
Q ss_pred EEEcC------------------------------------CCCCCeEEEEEeCC-CCeEEEEEeCCCeEEE
Q 035500 570 QLFTD------------------------------------MHREPINVAKFSHH-SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~------------------------------------gH~~~I~sV~fsP~-g~~LLaTgS~DgtIRc 604 (606)
..+.. .|.+.|++++|+++ +..++++|+.||+|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 77762 18999999999998 3458999999999986
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=173.30 Aligned_cols=151 Identities=7% Similarity=0.026 Sum_probs=118.3
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNP-SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP-~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| .+++++++|+.||+|++||+++++...... ..|...|.+++|+| ++.++++|+.||+|++||++++.
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~-- 203 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPD-- 203 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTT--
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCC--
Confidence 88999999 367899999999999999999988865443 25666899999999 67899999999999999999842
Q ss_pred cccccCCcce-EEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeE--EEEEeCCCCe
Q 035500 519 VADARGNSSV-ATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPIN--VAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i-~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~--sV~fsP~g~~ 591 (606)
.+ ..+. |..+|++++|+|++.+++++++ ++|++||+++++.+..+.. .|...+. +++|+|++.+
T Consensus 204 --------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 204 --------QASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp --------SCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred --------CCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 23 4455 4577999999999999999995 4999999999877554441 1334444 6999999996
Q ss_pred EEEEEeC-CCeEEE
Q 035500 592 CLLLLHL-TTMSRC 604 (606)
Q Consensus 592 LLaTgS~-DgtIRc 604 (606)
+++++. |+.|++
T Consensus 275 -l~~~s~~d~~i~v 287 (343)
T 3lrv_A 275 -MIAYSNESNSLTI 287 (343)
T ss_dssp -EEEEETTTTEEEE
T ss_pred -EEEecCCCCcEEE
Confidence 566666 888875
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.1e-17 Score=162.59 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=125.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+|.+++++++|+.||.|++|| .++....+. ..|...|.+++|+|.+ . +++|+.||.|++||++.
T Consensus 145 v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~-~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~----- 214 (313)
T 3odt_A 145 VWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFS-GIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHT----- 214 (313)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEEC-SSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTT-----
T ss_pred eeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEe-ccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCc-----
Confidence 778899987899999999999999999 345544443 1389999999999953 3 99999999999999988
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+. +..+|.+++|+|++ .+++++.||.|++||+++++.+..+. .|...|++++|+|++. +++++.
T Consensus 215 -----~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~~~~~~ 285 (313)
T 3odt_A 215 -----GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD--IIVGSS 285 (313)
T ss_dssp -----CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC--EEEEET
T ss_pred -----hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC--EEEEeC
Confidence 34667777 45679999999999 68999999999999999999999998 7999999999999997 557899
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|++
T Consensus 286 dg~i~i 291 (313)
T 3odt_A 286 DNLVRI 291 (313)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 999885
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.76 E-value=5.9e-17 Score=168.04 Aligned_cols=161 Identities=14% Similarity=0.233 Sum_probs=127.4
Q ss_pred eeEEEEcCC--CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPS--NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~--dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+|. ++.++++|+.||.|++||+.+++....+. +|.+.|.+++|+|++...+++|+.||.|++||++....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 677889883 44499999999999999999988877655 89999999999996555799999999999999987532
Q ss_pred CcccccC------CcceEE-eecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----------------------
Q 035500 518 KVADARG------NSSVAT-YYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK----------------------- 567 (606)
Q Consensus 518 ~~~~l~~------~~~i~t-~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k----------------------- 567 (606)
....+.. ...... ..+...|.+++|+|+++++++++.||.|++||+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301 (408)
T ss_dssp CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC
T ss_pred ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEec
Confidence 1111100 000111 1245669999999999999999999999999998653
Q ss_pred ------------------------eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 568 ------------------------PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 568 ------------------------~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+..+. +|...|++++|+|++. ++++|+.||.|+.
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i 360 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQ-ELYSGSRDCNILA 360 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTT-EEEEEETTSCEEE
T ss_pred CCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCC-EEEEECCCCeEEE
Confidence 345556 7999999999999998 4889999999975
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.2e-17 Score=168.48 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=131.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| +++++++|+.||.|++|| .+++....+. +|...|.+++|+| ++.+|++++.||.|++||+.......
T Consensus 111 v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 111 VTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLN--FHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEEC--CCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeecc--CCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEE
Confidence 88999999 999999999999999999 5567666554 8999999999999 67899999999999999997642210
Q ss_pred c------c---------------c-------------------------cCCcceEEee-cCCCeEEEEEccCCCEEEEE
Q 035500 520 A------D---------------A-------------------------RGNSSVATYY-DFEQLTSVHVNSTDDQFLAS 552 (606)
Q Consensus 520 ~------~---------------l-------------------------~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg 552 (606)
. . . ....++..+. +..+|.+++|+|++++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 0 0 0 0112333444 45669999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 553 GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 553 s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+.|+.|++||+++++.+..+. +|...|.+++|+|++ .+++++.|+.|++
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~l~~~~~d~~i~i 314 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD--KVISCSMDGSVRL 314 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT--EEEEEETTSEEEE
T ss_pred cCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC--EEEEEeCCCcEEE
Confidence 999999999999999999998 799999999999998 6889999999875
No 93
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.4e-18 Score=200.86 Aligned_cols=162 Identities=10% Similarity=0.057 Sum_probs=127.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE----EEecc-----CCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC----YIPSI-----GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~----~~~~~-----gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++|+| +++++|+|+.||+||+||+.++.... ..... +|...|++++|+| ++.+||+|+.||+|++|
T Consensus 438 v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lw 515 (902)
T 2oaj_A 438 KRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLF 515 (902)
T ss_dssp CCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred CCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEE
Confidence 56678999 99999999999999999998875321 11112 8999999999999 67899999999999999
Q ss_pred eCCCCCCCcc-------c---------c-------------------cCCcceEEee-cCCCeEEEEEccCCCEEEEEeC
Q 035500 511 DLNHIPPKVA-------D---------A-------------------RGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 511 Dl~~~~~~~~-------~---------l-------------------~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
|+...+.... . + .+..++.++. |..+|++|+|+|+| ++|+|+.
T Consensus 516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~ 594 (902)
T 2oaj_A 516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA 594 (902)
T ss_dssp EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET
T ss_pred EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC
Confidence 9976421000 0 0 0012456666 55779999999999 9999999
Q ss_pred CCcEEEEECCCCceeEE--Ec---CCCCCCeEEEEEe-----CCC--CeEEEEEeCCCeEEE
Q 035500 555 SKNVALYDINTEKPLQL--FT---DMHREPINVAKFS-----HHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 555 Dg~I~IWDlrt~k~v~~--l~---~gH~~~I~sV~fs-----P~g--~~LLaTgS~DgtIRc 604 (606)
|++|++||++++..+.. +. .+|.+.|++++|+ |+| ...+++|+.|++||.
T Consensus 595 D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~ 656 (902)
T 2oaj_A 595 AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVIT 656 (902)
T ss_dssp TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEE
T ss_pred CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEE
Confidence 99999999988776542 21 2799999999999 886 346899999999985
No 94
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-17 Score=196.13 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++|+| ++++||+|+.||+|+|||..+++.... ..|...|.+++|+| +.+|+|++.|++|++||+.+
T Consensus 20 V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~---~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~----- 88 (902)
T 2oaj_A 20 PIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIK---LEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYS----- 88 (902)
T ss_dssp EEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEE---CSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTT-----
T ss_pred cEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEE---cCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCC-----
Confidence 88999999 999999999999999999987766543 26888999999998 45999999999999999998
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-----------EEEcCCCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL-----------QLFTDMHREPINVAKFSHH 588 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v-----------~~l~~gH~~~I~sV~fsP~ 588 (606)
...+.++.++..|++++|+|+++++++|+.||+|++||+++++.. ..+. +|.+.|++++|+|+
T Consensus 89 -----~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 89 -----QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPR 162 (902)
T ss_dssp -----CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETT
T ss_pred -----CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccC
Confidence 346777777888999999999999999999999999999988753 1223 69999999999998
Q ss_pred CCeEEEEEeCCCeE
Q 035500 589 SPLCLLLLHLTTMS 602 (606)
Q Consensus 589 g~~LLaTgS~DgtI 602 (606)
+..++++|+.|++|
T Consensus 163 ~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 163 DIGTVLISYEYVTL 176 (902)
T ss_dssp EEEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCcE
Confidence 76678999999987
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=168.69 Aligned_cols=153 Identities=14% Similarity=0.212 Sum_probs=124.5
Q ss_pred eeEEE------EcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-cCC-CCCEEEEE----EeeCCCCEEEEEECCCe
Q 035500 440 PRQFE------YNPSNPSLMAFGTLDGEVIVINHENGN-VACYIPS-IGG-TNSVLGLC----WLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~sla------fsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~~-~gH-~~~V~~L~----fsp~~~~~LaSgS~Dgt 506 (606)
|.+++ |+| +++++++|+.||.|++||+.++. ....+.. .+| ...|.+++ |+| ++..+++|+.||.
T Consensus 114 v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 114 INAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGD 191 (357)
T ss_dssp EEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSE
T ss_pred eEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCe
Confidence 66775 467 88999999999999999999876 5555442 121 34899999 556 6789999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeEEEc----CCCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS---TDDQFLASGYSKNVALYDINTEKPLQLFT----DMHREP 579 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp---~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~----~gH~~~ 579 (606)
|++||++.. .......+...|.+++|+| +++++++|+.||.|++||+++++....+. .+|...
T Consensus 192 i~i~d~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 192 IKLFDLRNM----------ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261 (357)
T ss_dssp EEEEETTTT----------EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred EEEEECccC----------ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence 999999983 3455566778899999999 89999999999999999999876654433 169999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
|++++|+|++..++++|+.|+.|+.
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~i 286 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHL 286 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEE
Confidence 9999999999878999999999875
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.3e-17 Score=188.15 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=130.3
Q ss_pred eeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSN--PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~d--g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~ 516 (606)
|++++|+| + ++++++|+.||+|++||+.+++........+|.+.|.+++|+|+. +..+++|+.||+|++||++...
T Consensus 56 V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 56 VWRVDWAH-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEEECC-TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred eEEEEecC-CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 88999998 5 899999999999999999988744444556899999999999953 7899999999999999998842
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEECCCC----ceeEEEcCCCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNS-------------TDDQFLASGYSKNVALYDINTE----KPLQLFTDMHREP 579 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp-------------~g~~LaSgs~Dg~I~IWDlrt~----k~v~~l~~gH~~~ 579 (606)
. ........+...|.+++|+| ++..+++|+.||+|++||++++ .....+. +|...
T Consensus 135 ~-------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~ 206 (753)
T 3jro_A 135 T-------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDW 206 (753)
T ss_dssp C-------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSC
T ss_pred C-------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCc
Confidence 2 11222333567799999999 4889999999999999999987 4456677 79999
Q ss_pred eEEEEEeCCC--CeEEEEEeCCCeEEE
Q 035500 580 INVAKFSHHS--PLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~fsP~g--~~LLaTgS~DgtIRc 604 (606)
|++++|+|++ ..++++|+.|++|++
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 9999999994 447999999999985
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.7e-17 Score=170.35 Aligned_cols=148 Identities=10% Similarity=0.100 Sum_probs=119.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC---------CCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE---------NGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~---------tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIkl 509 (606)
|.++.|+| + +++|+.||+|++|+.. +++.+..+. .+|.+.|.+++|+|. ++.++++|+.||+|++
T Consensus 79 v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 79 PRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE-VDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp CCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE-CCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEee-cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 55677888 3 9999999999999765 444444333 377889999999982 3578999999999999
Q ss_pred EeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-EEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL-QLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v-~~l~~gH~~~I~sV~fs 586 (606)
||++.+ .++.... +...|.+++|+|++.++++|+.||.|++||+++++.+ ..+..+|...|++++|+
T Consensus 154 wd~~~~----------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 154 QSYEDD----------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp EESSSS----------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred EECCCC----------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 999973 3444443 3446999999999999999999999999999999887 78883399999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++.+ +++|+.| +|+.
T Consensus 224 ~~g~~-l~s~~~~-~v~i 239 (343)
T 3lrv_A 224 DNGYW-MVVECDQ-TVVC 239 (343)
T ss_dssp TTSSE-EEEEESS-BEEE
T ss_pred CCCCE-EEEEeCC-eEEE
Confidence 99985 6777744 7764
No 98
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.75 E-value=1.2e-16 Score=170.93 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++ ++++|+.||+|++||+++++....+. +|.+.|.+++|++. ++.++++|+.||+|++||++.....
T Consensus 165 V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 165 VWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp EEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred EEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 88999998 65 99999999999999999999887665 89999999999963 4578999999999999999875321
Q ss_pred cccc-------------cCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEE
Q 035500 519 VADA-------------RGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 519 ~~~l-------------~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~ 584 (606)
.... .....+..+.+ ...|.++ +++++++++|+.|+.|++||+++++.+..+. +|...|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~ 317 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTI 317 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEE
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEE
Confidence 1000 00011334444 3457776 5779999999999999999999999999998 7999999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++.. +++|+.|++|+.
T Consensus 318 ~~~~~~~-l~sg~~dg~i~v 336 (464)
T 3v7d_B 318 YDHERKR-CISASMDTTIRI 336 (464)
T ss_dssp EETTTTE-EEEEETTSCEEE
T ss_pred EcCCCCE-EEEEeCCCcEEE
Confidence 9999985 889999999985
No 99
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.74 E-value=4.6e-17 Score=178.93 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+ ++++++|+. ||.|++||+.+++... ....+|...|.+++|+| ++.+|++|+.||.|++||+...
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~--- 520 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSR--- 520 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCC---
Confidence 7788897 689999999 9999999999876653 45568999999999999 6789999999999999999883
Q ss_pred cccccCCcceEEee--cCCCeEEEEEcc----------CCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNS----------TDDQFLASGYSKNVALYDINTE-KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp----------~g~~LaSgs~Dg~I~IWDlrt~-k~v~~l~~gH~~~I~sV~f 585 (606)
..+..+. |...|++++|+| ++.++++|+.||.|++||++++ +.+..+. +|...|++++|
T Consensus 521 -------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~l~~ 592 (615)
T 1pgu_A 521 -------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLW 592 (615)
T ss_dssp -------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEE
T ss_pred -------cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-cCccceEEEEE
Confidence 4555555 556799999999 9999999999999999999998 7788887 89999999999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++. +++++.|++|+.
T Consensus 593 s~~~~--l~s~~~d~~v~i 609 (615)
T 1pgu_A 593 ETPST--LVSSGADACIKR 609 (615)
T ss_dssp EETTE--EEEEETTSCEEE
T ss_pred cCCCC--eEEecCCceEEE
Confidence 99998 789999999985
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.74 E-value=1.9e-17 Score=168.49 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeC-CCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDL-NHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl-~~~~ 516 (606)
|++++|+| +++++++|+.||.|+|||+.++.. .......+|...|.+++|+| ++. ++++|+.||.|++||+ ...
T Consensus 14 v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~- 90 (342)
T 1yfq_A 14 ISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSP- 90 (342)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSS-
T ss_pred EEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCC-
Confidence 88999999 899999999999999999987761 11112338999999999999 578 8999999999999999 763
Q ss_pred CCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---------CceeEEEcCCCCCCeEEEE
Q 035500 517 PKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINT---------EKPLQLFTDMHREPINVAK 584 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt---------~k~v~~l~~gH~~~I~sV~ 584 (606)
. ...+. |...|.+++|+| ++.+++++.|+.|++||+++ ++++..+. |...|++++
T Consensus 91 ---------~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 157 (342)
T 1yfq_A 91 ---------S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMD 157 (342)
T ss_dssp ---------S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEE
T ss_pred ---------c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEE
Confidence 1 23444 456699999999 99999999999999999998 77766665 889999999
Q ss_pred EeCCCCeEEEEEeCCCeEEE
Q 035500 585 FSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 585 fsP~g~~LLaTgS~DgtIRc 604 (606)
|+|++ +++++.|+.|+.
T Consensus 158 ~~~~~---l~~~~~d~~i~i 174 (342)
T 1yfq_A 158 TNSSR---LIVGMNNSQVQW 174 (342)
T ss_dssp ECSSE---EEEEESTTEEEE
T ss_pred ecCCc---EEEEeCCCeEEE
Confidence 99886 788999998875
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.74 E-value=2.2e-16 Score=158.64 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=125.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.++|+||| ++ +||+|. |++|+|||+++++....+...+|...|.+++|+| ++.+++||+.||+|++||+++
T Consensus 28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~----- 98 (318)
T 4ggc_A 28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ----- 98 (318)
T ss_dssp CBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTT-----
T ss_pred ceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCC-----
Confidence 46789998 54 777765 9999999999999999888889999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+|.. +.++ ++.+..+++++.++.+++|+...+.. +..+. +|...+..+.|++.+.. +++++
T Consensus 99 -----~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~s~~ 169 (318)
T 4ggc_A 99 -----QKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRH-LASGG 169 (318)
T ss_dssp -----TEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSE-EEEEE
T ss_pred -----ceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCCE-EEEEe
Confidence 456777776544 6555 45578999999999999999997654 56666 79999999999999984 88999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|++|++
T Consensus 170 ~d~~i~i 176 (318)
T 4ggc_A 170 NDNLVNV 176 (318)
T ss_dssp TTSCEEE
T ss_pred cCcceeE
Confidence 9999985
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.7e-16 Score=158.89 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|++++| | +++++++|+.||.|++||+.+++....+. .|.+.|.+++|+| ++..+++|+.||.|++|++.....
T Consensus 21 v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~-- 93 (313)
T 3odt_A 21 VRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVY--TGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSG-- 93 (313)
T ss_dssp EEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEE--ECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTT--
T ss_pred cEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEee--cCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCC--
Confidence 889999 7 88999999999999999999888777655 8899999999999 678999999999999999987432
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..++..+. +...|.+++| +++.+++++.|+.|++|| .++.+..+. +|...|.+++|+|.....+++++.
T Consensus 94 -----~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 94 -----EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp -----SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEET
T ss_pred -----CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEEC
Confidence 23455555 4566999999 578999999999999999 677788888 799999999999843446899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 164 d~~i~i 169 (313)
T 3odt_A 164 DKTIKL 169 (313)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 999875
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.9e-17 Score=188.46 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=128.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC-CCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY-PSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~-~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| +++++++|+.||+|+|||+.++.......+.+|.+.|++++|+|.. +.++++|+.||+|++||+..+.
T Consensus 12 V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-- 88 (753)
T 3jro_A 12 IHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-- 88 (753)
T ss_dssp EEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--
T ss_pred eEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 88999999 8999999999999999999854433333445999999999998742 7899999999999999998732
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCeEEEEEeCC-----
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNST--DDQFLASGYSKNVALYDINTEK--PLQLFTDMHREPINVAKFSHH----- 588 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~--g~~LaSgs~Dg~I~IWDlrt~k--~v~~l~~gH~~~I~sV~fsP~----- 588 (606)
...+..+. |..+|.+++|+|+ ++.+++|+.||+|++||++++. ....+. +|...|++++|+|.
T Consensus 89 ------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 89 ------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEED 161 (753)
T ss_dssp ------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC----
T ss_pred ------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcccccc
Confidence 12445555 4567999999999 8999999999999999999873 345566 79999999999995
Q ss_pred --------CCeEEEEEeCCCeEEE
Q 035500 589 --------SPLCLLLLHLTTMSRC 604 (606)
Q Consensus 589 --------g~~LLaTgS~DgtIRc 604 (606)
+. .+++|+.||+|+.
T Consensus 162 ~~~~~~~d~~-~l~sgs~dg~I~i 184 (753)
T 3jro_A 162 GEHNGTKESR-KFVTGGADNLVKI 184 (753)
T ss_dssp -----CGGGC-CEEEEETTSCEEE
T ss_pred cccccCCCCC-EEEEEECCCeEEE
Confidence 55 5899999999985
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.74 E-value=2e-17 Score=175.62 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=119.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEE---eccCCCCCEEEEEEeeC-------CCCEEEEEECCCeEEEEeCCC
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYI---PSIGGTNSVLGLCWLKK-------YPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~---~~~gH~~~V~~L~fsp~-------~~~~LaSgS~DgtIklWDl~~ 514 (606)
+.|.++.++|+|+.|++|++||..++...... .+.||.+.|.+++|+|. ++.+|+|||.|++|++||++.
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 34447889999999999999999987664322 25699999999999972 457899999999999999987
Q ss_pred CCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEc--------------------
Q 035500 515 IPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFT-------------------- 573 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~-------------------- 573 (606)
. ......+.++.+|.+++|+|++ .++++|+.|++|++||+++++......
T Consensus 176 ~---------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 176 E---------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp T---------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred C---------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 3 2334566678889999999997 589999999999999999876532221
Q ss_pred ----CCCCCCeEEEEEe-CCCCeEEEEEeCCCeEEE
Q 035500 574 ----DMHREPINVAKFS-HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ----~gH~~~I~sV~fs-P~g~~LLaTgS~DgtIRc 604 (606)
.+|...|.+++|+ |++. .+++++.|+++++
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~v 281 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLR 281 (393)
T ss_dssp -----CCSSSCSEEEEETTTTC-EEEEECTTSEEEE
T ss_pred eeecccccccceeeeeecCCCC-EEEEEeCCCCEEE
Confidence 2588889999997 6776 5889999999885
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.74 E-value=2.9e-17 Score=174.38 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=115.7
Q ss_pred eeEEEEcC-------CCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNP-------SNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP-------~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
|.+++|+| .++++||+||.|++|+|||+.++....... +|.+.|.+++|+|.++.+|++|+.||+|++||+
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence 88999987 378899999999999999998877665443 888999999999966678999999999999999
Q ss_pred CCCCCCcccc--------------------------------------cCCcce---------EEee-------------
Q 035500 513 NHIPPKVADA--------------------------------------RGNSSV---------ATYY------------- 532 (606)
Q Consensus 513 ~~~~~~~~~l--------------------------------------~~~~~i---------~t~~------------- 532 (606)
+......... .....+ ..+.
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~ 296 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS 296 (393)
T ss_dssp TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee
Confidence 8653211000 000000 0000
Q ss_pred -----------------cCCCeEEEEEccC-CC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 533 -----------------DFEQLTSVHVNST-DD-QFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 533 -----------------~~~~V~sV~~sp~-g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
.........|+|. +. ++++|+.||+|++||+.+++....+. +|...|++++|+|+|++ |
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~-L 374 (393)
T 4gq1_A 297 TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSH-L 374 (393)
T ss_dssp -------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSE-E
T ss_pred cCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCE-E
Confidence 0000011123332 23 56677789999999999988887777 68899999999999995 7
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
|+++.||++..
T Consensus 375 A~as~~Gv~lv 385 (393)
T 4gq1_A 375 AIATEGSVLLT 385 (393)
T ss_dssp EEEESSEEEEE
T ss_pred EEEeCCCeEEE
Confidence 89999997543
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.7e-17 Score=183.52 Aligned_cols=145 Identities=7% Similarity=-0.018 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-----------------------------EEEeccCCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-----------------------------CYIPSIGGTNSVLGLCW 490 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-----------------------------~~~~~~gH~~~V~~L~f 490 (606)
|.+++|+| ||+++|+|+.|++|+ |.+.++.+ ..+. .+|...|.+++|
T Consensus 18 v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~-~~~~~~V~~vaw 93 (588)
T 2j04_A 18 KNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN-SQPVCYPRVCKP 93 (588)
T ss_dssp SCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST-TSCSCCEEEEEE
T ss_pred EEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEee-cCCCCcEEEEEE
Confidence 67899999 999999999999996 54333311 1111 256788999999
Q ss_pred eeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCC-----CeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 035500 491 LKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFE-----QLTSVHVNSTDDQFLASGYSKNVALYDINT 565 (606)
Q Consensus 491 sp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-----~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt 565 (606)
+| ++.+||+++.||+|++||... .+..+.++. .|.+++|||+|+++|+|+.||+|++||+.+
T Consensus 94 SP-dG~~LAs~s~dg~V~iwd~~~------------~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 94 SP-IDDWMAVLSNNGNVSVFKDNK------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CS-SSSCEEEEETTSCEEEEETTE------------EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CC-CCCEEEEEeCCCcEEEEeCCc------------eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99 678999999999999999443 445555333 499999999999999999999999999998
Q ss_pred Cce-------eEEEc---CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 566 EKP-------LQLFT---DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 566 ~k~-------v~~l~---~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++. +.+++ .+|.+.|.+++|+|+| +++++.|++||.
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 853 56662 3688999999999998 678888999984
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.73 E-value=1.3e-16 Score=182.35 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|++++|+| ++.++++|+.||+|++||+.++ .....+. +|...|.+++|+|.++..+++|+.||+|++||+...
T Consensus 100 v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~--- 173 (814)
T 3mkq_A 100 IRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--- 173 (814)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---
T ss_pred EEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 88999999 8999999999999999999886 4444444 899999999999856679999999999999999873
Q ss_pred cccccCCcceEEee-cC-CCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY-DF-EQLTSVHVNS--TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~-~~V~sV~~sp--~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
.+...+. ++ ..+.+++|+| ++.++++|+.||.|++||+++++.+..+. +|...|++++|+|+++ +++
T Consensus 174 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~ 244 (814)
T 3mkq_A 174 -------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP-III 244 (814)
T ss_dssp -------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSS-EEE
T ss_pred -------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC-EEE
Confidence 2334444 33 6799999999 88999999999999999999999999998 7999999999999998 588
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+|+.|+.|+.
T Consensus 245 ~~~~dg~v~v 254 (814)
T 3mkq_A 245 SGSEDGTLKI 254 (814)
T ss_dssp EEETTSCEEE
T ss_pred EEeCCCeEEE
Confidence 9999999875
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-16 Score=169.82 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=126.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEE--EEeccCCCCCEEEEEEeeC--CCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVAC--YIPSIGGTNSVLGLCWLKK--YPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~--~~~~~gH~~~V~~L~fsp~--~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| ++.+|++|+.||.|++|++.++.... ...+.+|.+.|.+++|+|+ .+.+|++|+.|++|++||++.+
T Consensus 152 v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 78999999 99999999999999999998776542 1123489999999999994 1679999999999999999873
Q ss_pred CCCcccccCCcceEE-ee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC-------------------
Q 035500 516 PPKVADARGNSSVAT-YY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD------------------- 574 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t-~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------------------- 574 (606)
..+.. +. |...|.+++|+ ++.++++|+.|++|++||+++++.+..+..
T Consensus 231 ----------~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 231 ----------FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp ----------TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred ----------ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 34544 32 45679999999 999999999999999999999998887762
Q ss_pred -----CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 -----MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 -----gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+...|..++|+|++.++++++..|+.|++
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~i 334 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEE
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEE
Confidence 124579999999999976555558998875
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.72 E-value=1e-16 Score=168.87 Aligned_cols=148 Identities=10% Similarity=0.046 Sum_probs=117.8
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+++++||| ||+++|+|+ .|++|+|||+++++.+..+ .|.+.|.+++|+| ++.++++++.|+ +++|+...+.
T Consensus 136 ~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~---~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~- 208 (365)
T 4h5i_A 136 TKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEI---ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS- 208 (365)
T ss_dssp EEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEE---ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC-
T ss_pred EEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEe---CCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc-
Confidence 78899999 999877554 7899999999999887765 4778899999999 678999998665 5566655531
Q ss_pred CcccccCCcce-EEee-cCCCeEEEEEccCCCEEEEEeCCC----cEEEEECCCCce----eEEEcCCCCCCeEEEEEeC
Q 035500 518 KVADARGNSSV-ATYY-DFEQLTSVHVNSTDDQFLASGYSK----NVALYDINTEKP----LQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 518 ~~~~l~~~~~i-~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg----~I~IWDlrt~k~----v~~l~~gH~~~I~sV~fsP 587 (606)
... .... +...|.+++|+|++..+++++.|+ .++.||+..... ...+. +|...|++++|+|
T Consensus 209 --------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 209 --------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDM 279 (365)
T ss_dssp --------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECT
T ss_pred --------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECC
Confidence 111 1222 345599999999999999999887 688999887654 34566 6999999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
+|. ++|+|+.|++|++
T Consensus 280 dg~-~lasgs~D~~V~i 295 (365)
T 4h5i_A 280 KGE-LAVLASNDNSIAL 295 (365)
T ss_dssp TSC-EEEEEETTSCEEE
T ss_pred CCC-ceEEEcCCCEEEE
Confidence 998 5899999999986
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.71 E-value=2.3e-16 Score=160.46 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=123.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| ++ +++|+.||.|++||+++ +..........|...|.+++|+|.++..+++|+.||.|++||++.....
T Consensus 153 v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 153 IFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred eEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence 78999998 54 99999999999999988 5543333344788999999999823579999999999999999874100
Q ss_pred cccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-CCCeEEEEEeC
Q 035500 519 VADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMH-REPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH-~~~I~sV~fsP 587 (606)
. ...+...+..+ .+|.+++|+|+++++++|+.||.|++||+++++.+..+. +| ...|++++ |
T Consensus 230 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~ 302 (342)
T 1yfq_A 230 Y----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--C 302 (342)
T ss_dssp T----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--E
T ss_pred c----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--C
Confidence 0 01344555543 279999999999999999999999999999999999998 67 99999999 8
Q ss_pred CCCeEEEEEeCCCe
Q 035500 588 HSPLCLLLLHLTTM 601 (606)
Q Consensus 588 ~g~~LLaTgS~Dgt 601 (606)
++. ++++|+.|++
T Consensus 303 ~~~-~l~s~s~Dg~ 315 (342)
T 1yfq_A 303 SDN-ILCLATSDDT 315 (342)
T ss_dssp CSS-EEEEEEECTH
T ss_pred CCC-eEEEEecCCc
Confidence 888 5889999987
No 111
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.71 E-value=3.4e-16 Score=167.50 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=127.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++|+| +++++++|+.||+|++||+.+++.+..+. +|...|.+++|++ .++++|+.||+|++||++..
T Consensus 313 v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~---- 382 (464)
T 3v7d_B 313 IYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY---- 382 (464)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC----
T ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC----
Confidence 88999999 89999999999999999999999887665 8999999999974 69999999999999999983
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.......+...+..++|+|++.++++|+ ||.|++||+++++.+..+..+|...|++++|+ +..++++++.|
T Consensus 383 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~ 453 (464)
T 3v7d_B 383 ------SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD 453 (464)
T ss_dssp ------CEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred ------ceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence 3445555667788899999999999999 89999999999999887555799999999997 56788888888
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.+-.
T Consensus 454 g~~~i 458 (464)
T 3v7d_B 454 GQSFL 458 (464)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 87643
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-16 Score=176.60 Aligned_cols=149 Identities=14% Similarity=0.164 Sum_probs=116.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-----CEEEEEEeeCCCCEEEEEECCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-----SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-----~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~ 514 (606)
|.+++||| +|.++|+++.||+|+|||.++ ....+ . |.. .|.+++|+| ++.+|++|+.||+|++||+..
T Consensus 88 V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l--~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 88 PRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNL--D-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEEC--C-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeec--c-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC
Confidence 88999999 999999999999999999654 33332 2 544 599999999 679999999999999999988
Q ss_pred CCCCcccccCCcceEEee-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eEEEcCCCCCCeEEEEEe
Q 035500 515 IPPKVADARGNSSVATYY-----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP---LQLFTDMHREPINVAKFS 586 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~-----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~---v~~l~~gH~~~I~sV~fs 586 (606)
+..... .--.+.++. |...|.+++|+|+| +++++.|++|++||+..++. .+++..+|...|.+++|+
T Consensus 161 ~~l~~~---~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 161 NSENTP---EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CTTTCC---CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred Cccccc---cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 421000 000245653 23469999999999 88999999999999998773 356644789999999999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|. .+|+++ |++|++
T Consensus 236 --g~-~LASa~-~~tIkL 249 (588)
T 2j04_A 236 --DY-KVVLTC-PGYVHK 249 (588)
T ss_dssp --TT-EEEEEC-SSEEEE
T ss_pred --CC-EEEEEe-CCeEEE
Confidence 55 577776 688875
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.71 E-value=6.1e-16 Score=164.80 Aligned_cols=147 Identities=12% Similarity=0.207 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
...|+|++ + ++||+|. |++|+|||..+|+....+...+|...|++++|+| ++.+|++|+.||+|++||+.+
T Consensus 108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~----- 178 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ----- 178 (420)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----
T ss_pred ceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCC-----
Confidence 56789997 4 5887775 9999999999999998888889999999999999 678999999999999999998
Q ss_pred ccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEK-PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
...+..+.+| ..+.+++|+ +..+++|+.|+.+++||.+... .+..+. +|...+..+.|+|++.. +++++
T Consensus 179 -----~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~-l~s~~ 249 (420)
T 4gga_A 179 -----QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRH-LASGG 249 (420)
T ss_dssp -----TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSE-EEEEE
T ss_pred -----CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCe-eeeee
Confidence 4567777755 458888775 6899999999999999999754 466777 79999999999999984 88999
Q ss_pred CCCeEEE
Q 035500 598 LTTMSRC 604 (606)
Q Consensus 598 ~DgtIRc 604 (606)
.|+.+++
T Consensus 250 ~D~~v~i 256 (420)
T 4gga_A 250 NDNLVNV 256 (420)
T ss_dssp TTSCEEE
T ss_pred ccccceE
Confidence 9999875
No 114
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=5.4e-17 Score=175.97 Aligned_cols=150 Identities=9% Similarity=0.047 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCCEEE----EEeCCCcEEEEECCCC--------ceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECCCe
Q 035500 440 PRQFEYNPSNPSLMA----FGTLDGEVIVINHENG--------NVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~La----SGs~DGtVrIWDi~tg--------~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt 506 (606)
|++++|+| +++++| +|+.||+|+|||+.++ +.+. .....+|.+.|.+++|+|..+.+|++|+.||+
T Consensus 95 v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 95 IHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp EEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred ccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 88999999 899999 7889999999998654 2111 12344799999999999976889999999999
Q ss_pred EEEEeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC------CCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD------MHREP 579 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~------gH~~~ 579 (606)
|++||++.. ..+. ...|...|.+++|+|+|+++++|+.||+|++||++ ++....+.. .|...
T Consensus 174 v~iwD~~~~----------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 174 IAVLQVTET----------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp EEEEEESSS----------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred EEEEEcCCC----------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence 999999983 2233 33356679999999999999999999999999999 666555541 12338
Q ss_pred eEEEEEeCCCCeEEEEEeCCCe
Q 035500 580 INVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
|.+++|++++.++++.++.||.
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEecCceEEEEEccCCCc
Confidence 9999999998877777777754
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.70 E-value=4.8e-16 Score=162.71 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCC----------------C-------
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKY----------------P------- 495 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~----------------~------- 495 (606)
+..+++.+ +++.+ ++|+.|++|++||..+++.+..+. |...|.+++|+++. .
T Consensus 61 ~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 61 LSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp CCEEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred eEEEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence 45677888 55666 568889999999999999887664 55689998887631 0
Q ss_pred -----------CEEEE--EECCCeEEEEeCCCCCCCcccc-----cCCcc-eEEeec-CCCeEEEEEccCCCEEEEEeCC
Q 035500 496 -----------SKLVA--GSDSGCVRLFDLNHIPPKVADA-----RGNSS-VATYYD-FEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 496 -----------~~LaS--gS~DgtIklWDl~~~~~~~~~l-----~~~~~-i~t~~~-~~~V~sV~~sp~g~~LaSgs~D 555 (606)
..++. |+.||+|++||++......... ....+ +..+.+ ..+|.+++|+|++.++++|+.|
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 12222 3455555555555421000000 00012 556664 4669999999999999999999
Q ss_pred Cc-EEEEECCCCceeEEEcCC-CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 556 KN-VALYDINTEKPLQLFTDM-HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 556 g~-I~IWDlrt~k~v~~l~~g-H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
++ |++||+++++.+..+..+ |...|++++|+|++.+ +++|+.|++|++
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~i 266 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHV 266 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEE
Confidence 98 999999999999999855 9999999999999984 889999999985
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.69 E-value=7.5e-16 Score=161.20 Aligned_cols=146 Identities=11% Similarity=0.153 Sum_probs=113.8
Q ss_pred EEEEcCCCCCEEEE--EeCCCcEEEEECCCCc----------------eEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC
Q 035500 442 QFEYNPSNPSLMAF--GTLDGEVIVINHENGN----------------VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD 503 (606)
Q Consensus 442 slafsP~dg~~LaS--Gs~DGtVrIWDi~tg~----------------~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~ 503 (606)
.++++| .++|+ |+.||+|++||+.++. .... +.+|.+.|.+++|+| ++.+|+|||.
T Consensus 142 ~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~--~~~h~~~v~~~~~s~-~g~~l~s~s~ 215 (355)
T 3vu4_A 142 VCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL--IKAHTNPIKMVRLNR-KSDMVATCSQ 215 (355)
T ss_dssp EEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEE--ECCCSSCEEEEEECT-TSSEEEEEET
T ss_pred eEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE--EEccCCceEEEEECC-CCCEEEEEeC
Confidence 345666 56666 5899999999998765 1333 349999999999999 6789999999
Q ss_pred CCe-EEEEeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEE------
Q 035500 504 SGC-VRLFDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQL------ 571 (606)
Q Consensus 504 Dgt-IklWDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~------ 571 (606)
||+ |++||+++ ..++.++. |...|.+++|+|+++++++++.|++|++||++.+.. ...
T Consensus 216 d~~~v~iwd~~~----------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 216 DGTIIRVFKTED----------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TCSEEEEEETTT----------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCEEEEEECCC----------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 998 99999998 45677777 567799999999999999999999999999986532 111
Q ss_pred --------------EcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 572 --------------FTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 572 --------------l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+..++......++|+|++.. +++++.||.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~ 331 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIET 331 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEE
Confidence 11112233477999999985 788889998864
No 117
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.69 E-value=9.6e-16 Score=184.30 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| +++++|+|+.||+|+|||+.+++.+..+. +|.+.|.+++|+|. +...+++|+.||+|++||+++
T Consensus 660 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~---- 732 (1249)
T 3sfz_A 660 VLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ---- 732 (1249)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS----
T ss_pred EEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC----
Confidence 88999999 99999999999999999999999888766 89999999999985 345899999999999999988
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE-------------------------
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF------------------------- 572 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l------------------------- 572 (606)
..++.++.+ ..+|.+++|+|+++++++++.||+|++||+++++....+
T Consensus 733 ------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 733 ------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 345666664 566999999999999999999999999999876543322
Q ss_pred -----------------------------cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 -----------------------------TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 -----------------------------~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+|...|.+++|+|++. ++++|+.|+.|+.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVEL 866 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 226788999999999988 4788999998875
No 118
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.68 E-value=3.3e-15 Score=159.69 Aligned_cols=141 Identities=13% Similarity=0.251 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.+ +++++++|+.||+|++||+.+++....+. +|.+.|++++|++ ..+++|+.||+|++||+.+
T Consensus 122 ~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~----- 188 (445)
T 2ovr_B 122 ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET----- 188 (445)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEET---TEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEc--CCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc-----
Confidence 445444 57899999999999999999999887655 9999999999984 6999999999999999988
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
...+.++.+ ...|.+++|+ ++.+++|+.||+|++||+++++.+..+. +|...|++++| ++. .+++|+.
T Consensus 189 -----~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~ 257 (445)
T 2ovr_B 189 -----GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGR-RVVSGAY 257 (445)
T ss_dssp -----TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSS-CEEEEET
T ss_pred -----CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCC-EEEEEcC
Confidence 345666764 4569999985 6789999999999999999999999998 79999999999 455 4889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|+.
T Consensus 258 dg~i~i 263 (445)
T 2ovr_B 258 DFMVKV 263 (445)
T ss_dssp TSCEEE
T ss_pred CCEEEE
Confidence 999875
No 119
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.67 E-value=2.8e-15 Score=160.19 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=119.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.++++ +++++++|+.||+|++||..+++....+. +|.+.|.+++|. +..+++|+.||+|++||+.++
T Consensus 136 v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~---- 203 (435)
T 1p22_A 136 VYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG---- 203 (435)
T ss_dssp EEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEECC---SSEEEEEETTSCEEEEESSSC----
T ss_pred EEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCC----
Confidence 555555 78999999999999999999999887665 999999999993 479999999999999999883
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL---QLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v---~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..+.++.+ ...|.+++|+ ++.+++|+.||.|++||+++++.. ..+. +|...|++++| ++. .+++
T Consensus 204 ------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~s 271 (435)
T 1p22_A 204 ------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDK-YIVS 271 (435)
T ss_dssp ------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETT-EEEE
T ss_pred ------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCC-EEEE
Confidence 45666664 4669999997 569999999999999999988765 5566 79999999999 445 5889
Q ss_pred EeCCCeEEE
Q 035500 596 LHLTTMSRC 604 (606)
Q Consensus 596 gS~DgtIRc 604 (606)
|+.|++|++
T Consensus 272 ~~~dg~i~v 280 (435)
T 1p22_A 272 ASGDRTIKV 280 (435)
T ss_dssp EETTSEEEE
T ss_pred EeCCCeEEE
Confidence 999999875
No 120
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.67 E-value=1.9e-15 Score=165.98 Aligned_cols=148 Identities=12% Similarity=0.130 Sum_probs=128.3
Q ss_pred eeEEEEcCCCCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
|.+++|+| +++++++++.| +.|++|| +++....+ .+|...|.+++|+|++...+++++.|++|++||+..
T Consensus 119 v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~- 192 (615)
T 1pgu_A 119 ISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEV--SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP- 192 (615)
T ss_dssp EEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEEC--CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-
T ss_pred EEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceee--ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-
Confidence 88999999 99999999988 7888888 45665544 499999999999996555899999999999999887
Q ss_pred CCCcccccCCcceEEeec-CC---CeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcC---CCCCCeEEEEEeC
Q 035500 516 PPKVADARGNSSVATYYD-FE---QLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTD---MHREPINVAKFSH 587 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~-~~---~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~---gH~~~I~sV~fsP 587 (606)
...+..+.. .. .|.+++|+|+ ++++++++.|+.|++||+++++.+..+.. +|...|++++|+
T Consensus 193 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 193 ---------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp ---------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-
T ss_pred ---------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-
Confidence 456667764 45 6999999999 99999999999999999999999998844 699999999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
++. .+++++.|+.|+.
T Consensus 263 ~~~-~l~~~~~d~~i~~ 278 (615)
T 1pgu_A 263 DSQ-KFATVGADATIRV 278 (615)
T ss_dssp SSS-EEEEEETTSEEEE
T ss_pred CCC-EEEEEcCCCcEEE
Confidence 776 5889999999875
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.67 E-value=2.7e-15 Score=160.29 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=122.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++| +++++++|+.||+|++||+.+++....+. +|...|.+++|++ ..+++|+.||+|++||+.....
T Consensus 176 v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~-- 245 (435)
T 1p22_A 176 VLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTD-- 245 (435)
T ss_dssp EEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSC--
T ss_pred EEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCC--
Confidence 677777 66899999999999999999999887665 8999999999974 5999999999999999987431
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
......+. |...|.+++| +++++++|+.||.|++||+++++.+..+. +|...|.+++|+ +. .+++|+.
T Consensus 246 -----~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~-~l~~g~~ 314 (435)
T 1p22_A 246 -----ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DR-LVVSGSS 314 (435)
T ss_dssp -----CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TT-EEEEEET
T ss_pred -----ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CC-EEEEEeC
Confidence 11123444 4566999998 68899999999999999999999999999 799999999995 34 6899999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|++|+.
T Consensus 315 dg~i~i 320 (435)
T 1p22_A 315 DNTIRL 320 (435)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999985
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.66 E-value=5.7e-15 Score=157.81 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=122.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|.+++|++ +++++|+.||+|++||+++++....+. +|...|.+++|++ ..+++|+.||+|++||+..+
T Consensus 162 v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~---- 229 (445)
T 2ovr_B 162 VWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETG---- 229 (445)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEET---TEEEEEETTSEEEEEESSSC----
T ss_pred EEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEEC--CCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCC----
Confidence 77888964 699999999999999999998887665 8999999999974 58999999999999999973
Q ss_pred ccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.++..+.+ ..+|.+++| +++.+++|+.||.|++||+++++.+..+. +|...|.+++| ++. .+++|+.
T Consensus 230 ------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~-~l~~~~~ 297 (445)
T 2ovr_B 230 ------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGI-HVVSGSL 297 (445)
T ss_dssp ------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSS-EEEEEET
T ss_pred ------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCC-EEEEEeC
Confidence 45666664 566999988 68899999999999999999999999998 79999999999 455 5889999
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
|+.|++
T Consensus 298 d~~i~i 303 (445)
T 2ovr_B 298 DTSIRV 303 (445)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 999875
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.65 E-value=7.6e-15 Score=152.90 Aligned_cols=148 Identities=12% Similarity=0.155 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+| +++++ ++++.||+|++||..+++....+. .| ..+.+++|+|+ +..+ ++++.|+.|++||+.+
T Consensus 34 ~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~-~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~--- 105 (391)
T 1l0q_A 34 PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP--AG-SSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTS--- 105 (391)
T ss_dssp EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTT---
T ss_pred cceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEE--CC-CCccceEECCC-CCEEEEEECCCCEEEEEECCC---
Confidence 77899999 78766 677799999999999999887665 33 38999999995 4555 5666789999999998
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQF-LASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...+..+.++..+.+++|+|+++.+ ++++.|+.|++||+++++.+..+. .| ..+.+++|+|++.++++++
T Consensus 106 -------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 106 -------NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VG-RSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp -------TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEE
T ss_pred -------CeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cC-CCcceEEECCCCCEEEEEe
Confidence 3456677777889999999999866 788889999999999999988888 34 5679999999999888899
Q ss_pred eCCCeEEE
Q 035500 597 HLTTMSRC 604 (606)
Q Consensus 597 S~DgtIRc 604 (606)
+.|+.|+.
T Consensus 177 ~~~~~v~~ 184 (391)
T 1l0q_A 177 FDSMSISV 184 (391)
T ss_dssp TTTTEEEE
T ss_pred CCCCEEEE
Confidence 99998874
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.63 E-value=7.4e-15 Score=155.15 Aligned_cols=149 Identities=6% Similarity=-0.047 Sum_probs=128.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~~ 518 (606)
|.+++|+| ++.++++++.||.|++||.++++....+. .|...+.+++|+|+ +..+ ++++.|++|++||++.
T Consensus 172 v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~---- 243 (433)
T 3bws_A 172 VETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKT---- 243 (433)
T ss_dssp EEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTT----
T ss_pred eeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCC----
Confidence 78899998 89999999999999999999988887665 78889999999995 4555 5666899999999987
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEe--------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG--------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs--------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...+..+..+..+.+++|+|+++.+++++ .|+.|++||+++++.+..+. |...+..++|+|+++
T Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 244 ------KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTEN 315 (433)
T ss_dssp ------TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTT
T ss_pred ------CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCC
Confidence 34566666677799999999999988887 58899999999998877765 667899999999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
.++++++.|+.|+.
T Consensus 316 ~l~~~~~~~~~v~v 329 (433)
T 3bws_A 316 KIYVSDMCCSKIEV 329 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEE
Confidence 99999999998875
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.60 E-value=4.8e-14 Score=146.83 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~DgtIklWDl~~~~~ 517 (606)
+.+++|+| +++.+ ++++.|+.|++||+.+++....+. .| ..+.+++|+|+ +..+ ++++.|+.|++||++.
T Consensus 118 ~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~--- 189 (391)
T 1l0q_A 118 PLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVS--VG-RSPKGIAVTPD-GTKVYVANFDSMSISVIDTVT--- 189 (391)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE--CC-SSEEEEEECTT-SSEEEEEETTTTEEEEEETTT---
T ss_pred cceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cC-CCcceEEECCC-CCEEEEEeCCCCEEEEEECCC---
Confidence 67899999 77766 788889999999999998877664 33 46799999995 4555 7888999999999987
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLa 594 (606)
...+..+.++..+.+++|+|+++++++++ .++.|++||+++++.+..+. .| ..+.+++|+|++.++++
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 190 -------NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYV 260 (391)
T ss_dssp -------TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEE
T ss_pred -------CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEE
Confidence 34566677777899999999999888887 68999999999999988888 45 45899999999998889
Q ss_pred EEeCCCeEEE
Q 035500 595 LLHLTTMSRC 604 (606)
Q Consensus 595 TgS~DgtIRc 604 (606)
+++.|+.|+.
T Consensus 261 s~~~d~~v~v 270 (391)
T 1l0q_A 261 ALSFXNTVSV 270 (391)
T ss_dssp EETTTTEEEE
T ss_pred EcCCCCEEEE
Confidence 9999999875
No 126
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.60 E-value=4.8e-15 Score=160.62 Aligned_cols=158 Identities=8% Similarity=-0.005 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----------ceEEE--EeccCCCCCEEEEEEeeCCCCEEE----EEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG-----------NVACY--IPSIGGTNSVLGLCWLKKYPSKLV----AGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg-----------~~v~~--~~~~gH~~~V~~L~fsp~~~~~La----SgS 502 (606)
+..+++++ ++.++++|+.|| |+||+.... ..... .....|.+.|.+++|+| ++.+|+ +|+
T Consensus 39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sgs 115 (434)
T 2oit_A 39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSSE 115 (434)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEETT
T ss_pred ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEeccC
Confidence 56789999 778999999998 999874310 11100 01124667899999999 567888 889
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcc---eEEee-cCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSS---VATYY-DFEQLTSVHVNST-DDQFLASGYSKNVALYDINTEKPLQLFTDMHR 577 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~---i~t~~-~~~~V~sV~~sp~-g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~ 577 (606)
.|++|++||+....... .....+ +..+. |...|.+++|+|+ +.++++++.||+|++||++++..+.... +|.
T Consensus 116 ~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~ 192 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA--KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST 192 (434)
T ss_dssp TEEEEEEEEHHHHHCTT--CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred CCceEEEEEccccccCC--cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence 99999999987531000 000112 23333 3567999999998 7899999999999999999987766666 689
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..|++++|+|+|.+ +++|+.|++|+.
T Consensus 193 ~~v~~v~wspdg~~-lasgs~dg~v~i 218 (434)
T 2oit_A 193 VAVTSVCWSPKGKQ-LAVGKQNGTVVQ 218 (434)
T ss_dssp GCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred CceeEEEEcCCCCE-EEEEcCCCcEEE
Confidence 99999999999885 789999999875
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.58 E-value=7.4e-14 Score=147.47 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=125.0
Q ss_pred eeEEEEcCCCCCEEEEEe--------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGT--------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
+.+++|+| +++++++++ .||.|++||+.+++..... .|...+.+++|+|++...+++++.|+.|++||
T Consensus 256 ~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 256 PRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred ceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 77899999 888999888 5899999999988876654 55568999999995545678889999999999
Q ss_pred CCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC---------------CCcEEEEECCCCceeEEEcCCC
Q 035500 512 LNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY---------------SKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~---------------Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
+.+ ...+..+.+...+.+++|+|+++++++++. ||.|++||+.+++.+..+. +
T Consensus 332 ~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~- 399 (433)
T 3bws_A 332 LKE----------KKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A- 399 (433)
T ss_dssp TTT----------TEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-
T ss_pred CCC----------CcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-
Confidence 987 345666777778999999999998888876 5799999999999988888 3
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+.+++|+|++.+++++++.|+.|+.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 4689999999999987666667999875
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.58 E-value=6e-14 Score=148.01 Aligned_cols=149 Identities=8% Similarity=-0.005 Sum_probs=108.9
Q ss_pred eeEEEEcCCC----CCEEEEEe--------------------CCCcEEEEEC-CCCceEEEEeccCCCCCEEEEEEee--
Q 035500 440 PRQFEYNPSN----PSLMAFGT--------------------LDGEVIVINH-ENGNVACYIPSIGGTNSVLGLCWLK-- 492 (606)
Q Consensus 440 V~slafsP~d----g~~LaSGs--------------------~DGtVrIWDi-~tg~~v~~~~~~gH~~~V~~L~fsp-- 492 (606)
|++++++| + ++++++++ .|++|++|++ ++|+.+.... +|...+..++|++
T Consensus 114 v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 114 IRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEEE
T ss_pred eEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec--cCCCceeeEEeeccC
Confidence 56667777 5 55666544 3899999998 4477666555 6766777777776
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeec-C---CCeEEEEEccCCCEE------------EEEeCCC
Q 035500 493 KYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYD-F---EQLTSVHVNSTDDQF------------LASGYSK 556 (606)
Q Consensus 493 ~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~-~---~~V~sV~~sp~g~~L------------aSgs~Dg 556 (606)
.++..|+|||.|++|++||+.+ .+++.++.+ + ..+.+++|+|+|.++ ++|+.|+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~T----------Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKT----------GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTT----------CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred CCCceEEEecCCCcEEEEECCC----------CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 3568999999999999999998 456777763 2 247888999999876 6788999
Q ss_pred cEEEEECCCCceeEEE----cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 557 NVALYDINTEKPLQLF----TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 557 ~I~IWDlrt~k~v~~l----~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|++||..+++.+..+ +.+|...+.+..++ +. ++|+|+.|++||.
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkI 309 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAI 309 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEE
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEE
Confidence 9999999999987765 34787776655554 54 6899999999985
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.46 E-value=3.8e-12 Score=136.38 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEE-EEECCCe--EEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLV-AGSDSGC--VRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~La-SgS~Dgt--IklWDl~ 513 (606)
+.+++|+| +++.+|+++.|+ +|++||+.+++... ..+|.+.+.+++|+| ++..|+ +++.|+. |++||+.
T Consensus 181 v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 181 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ---VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE---EECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred ceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE---eecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECC
Confidence 78899999 999999999886 99999999988753 237788999999999 556665 7777665 9999998
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY-SK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~-Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
++ .. ..+. +...+.+++|+|+|+.+++++. ++ .|.+||+.+++. ..+. .|...+.+++|+|+|
T Consensus 256 ~~----------~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 256 SG----------QI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT-WEGSQNQDADVSSDG 322 (415)
T ss_dssp TC----------CE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC-CSSSEEEEEEECTTS
T ss_pred CC----------CE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe-cCCCcccCeEECCCC
Confidence 73 22 3333 4456999999999998888876 44 677889988764 3444 467789999999999
Q ss_pred CeEEEEEeCCC
Q 035500 590 PLCLLLLHLTT 600 (606)
Q Consensus 590 ~~LLaTgS~Dg 600 (606)
.++++++..++
T Consensus 323 ~~l~~~~~~~g 333 (415)
T 2hqs_A 323 KFMVMVSSNGG 333 (415)
T ss_dssp SEEEEEEECSS
T ss_pred CEEEEEECcCC
Confidence 98666665543
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.42 E-value=3.6e-12 Score=125.08 Aligned_cols=150 Identities=7% Similarity=-0.038 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEE--CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-GNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGS--DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-g~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS--~DgtIklWDl~~~ 515 (606)
+.+++|+| +++++++++ ++.|++||+.+ ++...... +| ...+.+++|+| ++.++++++ .++..++|.+...
T Consensus 44 v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 44 FEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--GFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp CEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC--TTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred eEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc--ccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 78899999 999999987 88999999998 77665433 44 46788999999 668888888 4456777766542
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCC-CceeEEEcCCCCCCeEEEEEeCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINT-EKPLQLFTDMHREPINVAKFSHHSPLCL 593 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fsP~g~~LL 593 (606)
. .....+.....+..++|+|+++.++ +++.++.+++|+++. +.....+. .|...+.+++|+|++.+++
T Consensus 119 ~---------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 119 G---------GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp C---------CCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEE
T ss_pred C---------CceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEE
Confidence 1 1234445555689999999999776 788899999999653 23344555 5788999999999999877
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++++.|+.++.
T Consensus 189 ~~~~~~~~~~i 199 (297)
T 2ojh_A 189 FNSSRTGQMQI 199 (297)
T ss_dssp EEECTTSSCEE
T ss_pred EEecCCCCccE
Confidence 77766776553
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.40 E-value=4.7e-12 Score=128.07 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=114.1
Q ss_pred eeEEEEcCCCCCEEEEEeCC-CcEEEEECC--CCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-GEVIVINHE--NGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-GtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+.+++|+| +++++++++.+ +.|++|++. ++..........+ ..+.+++|+| ++..+++++ .++.|.+||+..+
T Consensus 40 ~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 40 VQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCC
Confidence 67899999 89988888887 999999987 5554322222233 3788999999 556665555 5899999999521
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCC-CceeE----EEcCCCCCCeEEEEEeCCC
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-YSKNVALYDINT-EKPLQ----LFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt-~k~v~----~l~~gH~~~I~sV~fsP~g 589 (606)
.. ...+..+.....+.+++|+|+++.+++++ .++.|.+||+.+ ++... .+.......+..++|+|++
T Consensus 117 ~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 117 LP-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EE-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred cc-------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 10 23445555666799999999999877777 889999999997 65432 2332234578899999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
.++++++..++.|+.
T Consensus 190 ~~l~~~~~~~~~i~~ 204 (343)
T 1ri6_A 190 QYAYCVNELNSSVDV 204 (343)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEE
Confidence 988888878887764
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.35 E-value=2.7e-11 Score=129.75 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=104.7
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCCCCcc
Q 035500 450 PSLMAFGTLD------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIPPKVA 520 (606)
Q Consensus 450 g~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~~~~~ 520 (606)
+..++.++.+ ++|++||...+. ...+. +|...|.+++|+| ++..|++++.|+ +|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~--~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg----- 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH--RSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG----- 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE--EESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-----
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe--CCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCC-----
Confidence 5566666654 799999998544 33333 7888999999999 678999999885 9999999874
Q ss_pred cccCCcceEEeecCCCeEEEEEccCCCEEE-EEeCCCc--EEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 521 DARGNSSVATYYDFEQLTSVHVNSTDDQFL-ASGYSKN--VALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 521 ~l~~~~~i~t~~~~~~V~sV~~sp~g~~La-Sgs~Dg~--I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.......+...+.+++|+|+|+.++ +++.|+. |++||+++++. ..+. .|...+.+++|+|+|.++++++.
T Consensus 214 -----~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 214 -----AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp -----CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTSSEEEEEEC
T ss_pred -----cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCCCEEEEEEC
Confidence 2333333556799999999999777 6666654 99999998876 4555 58889999999999998666665
Q ss_pred CCCe
Q 035500 598 LTTM 601 (606)
Q Consensus 598 ~Dgt 601 (606)
.++.
T Consensus 287 ~~g~ 290 (415)
T 2hqs_A 287 QAGR 290 (415)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 5654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.34 E-value=2.8e-11 Score=134.90 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=122.8
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC--CCCCCCcccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL--NHIPPKVADA 522 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl--~~~~~~~~~l 522 (606)
++| ++.++++++.|++|.+||..+++.+..+.. +|. +++++|+| +++++++++.|++|.+||+ .+
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t-------- 211 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSA-SGRYLLVIGRDARIDMIDLWAKE-------- 211 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECT-TSCEEEEEETTSEEEEEETTSSS--------
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECC-CCCEEEEECCCCeEEEEECcCCC--------
Confidence 788 778999999999999999999999887763 443 89999999 6789999999999999999 44
Q ss_pred cCCcceEEeecCCCeEEEEEcc----CCCEEEEEeC-CCcEEEEECCCCceeEEEcCC---------CC-CCeEEEEEeC
Q 035500 523 RGNSSVATYYDFEQLTSVHVNS----TDDQFLASGY-SKNVALYDINTEKPLQLFTDM---------HR-EPINVAKFSH 587 (606)
Q Consensus 523 ~~~~~i~t~~~~~~V~sV~~sp----~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~g---------H~-~~I~sV~fsP 587 (606)
...+.++.+...+..++|+| +|+++++++. +++|.+||..+++++..+... |. ..+..+.++|
T Consensus 212 --~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 212 --PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp --CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred --CcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 34566777666789999999 9999998884 899999999999998887621 22 3789999999
Q ss_pred CCCeEEEEEeCCCeEEE
Q 035500 588 HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 588 ~g~~LLaTgS~DgtIRc 604 (606)
+++.++++...++.|..
T Consensus 290 ~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLL 306 (543)
T ss_dssp SSSEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCeEEE
Confidence 99999999999988753
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.32 E-value=9e-11 Score=119.54 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCE-EEEEeCCCcEEEEECCCCceEEEEeccCCCC-------CEEEEEEeeCCCCEEEEEE--CCCeEEE
Q 035500 440 PRQFEYNPSNPSL-MAFGTLDGEVIVINHENGNVACYIPSIGGTN-------SVLGLCWLKKYPSKLVAGS--DSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~-LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-------~V~~L~fsp~~~~~LaSgS--~DgtIkl 509 (606)
+..++|+| ++++ ++++..++.|.+||..+++....+....... .+.+++|+|+ ++.++.++ .++.|.+
T Consensus 91 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEE
T ss_pred cceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEE
Confidence 56788999 7774 4555668999999999999887766421111 2789999994 56555554 5889999
Q ss_pred EeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC---CCCCCeEEEEE
Q 035500 510 FDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD---MHREPINVAKF 585 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~---gH~~~I~sV~f 585 (606)
||..+ ...+..+. ....+.+++|+|+++.+++++.++.|.+||..+++.+..+.. ++...+..++|
T Consensus 169 ~d~~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 169 VDGGN----------IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EETTT----------TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EcCCC----------CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 99987 34455665 344588999999999999999999999999999998877763 25567889999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|++.++++++..++.|..
T Consensus 239 s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 239 DTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp ETTTTEEEEEESSSSEEEE
T ss_pred CCCCCEEEEEeCCCCEEEE
Confidence 9999988888777777754
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.32 E-value=1.9e-11 Score=119.91 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCCEEE-EEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMA-FGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~La-SGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+..++|+| ++++++ +++.|+.++||++ .++... ....|...+.+++|+| ++..++.++ .|+.+++|++...
T Consensus 131 ~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~ 205 (297)
T 2ojh_A 131 SYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD 205 (297)
T ss_dssp EEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred ccceEECC-CCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC
Confidence 56789999 888777 7889999999995 344432 2347788899999999 556666555 6999999998742
Q ss_pred CCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCce--eEEEcCCCCCCeE
Q 035500 516 PPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYS-----------KNVALYDINTEKP--LQLFTDMHREPIN 581 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~D-----------g~I~IWDlrt~k~--v~~l~~gH~~~I~ 581 (606)
. ..+..+.. ...+.+++|+|+++++++++.+ +.|.+||+.+++. +..+. +|...+.
T Consensus 206 ~---------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~ 275 (297)
T 2ojh_A 206 G---------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMN 275 (297)
T ss_dssp S---------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSC
T ss_pred C---------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-CCCcccc
Confidence 1 23344443 3458899999999998888765 5699999998866 33444 5888999
Q ss_pred EEEEeCCCCeEEEEEeCCC
Q 035500 582 VAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~Dg 600 (606)
.++|+|++.++++++..++
T Consensus 276 ~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp SCCBCTTSSEEEEEEECCC
T ss_pred cceECCCCCEEEEEEeccC
Confidence 9999999998766666554
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.29 E-value=2.6e-11 Score=137.76 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=110.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-CC-----cEEEEECCCCceEEEEeccCCC----------------------CCEEEEEEe
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DG-----EVIVINHENGNVACYIPSIGGT----------------------NSVLGLCWL 491 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DG-----tVrIWDi~tg~~v~~~~~~gH~----------------------~~V~~L~fs 491 (606)
+.+++|+| ||+++++++. || +|++||+.+++........++. ..|.+++|+
T Consensus 39 ~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 77899999 9999999998 88 9999999999877665533333 237899999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE
Q 035500 492 KKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL 571 (606)
Q Consensus 492 p~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~ 571 (606)
| ++++|++++. ++|.+||+.++.. ........+...+.+++|+|+|++++.++. +.|++||+.+++....
T Consensus 118 p-Dg~~l~~~~~-~~i~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 118 P-DAQRLLFPLG-GELYLYDLKQEGK-------AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp T-TSSEEEEEET-TEEEEEESSSCST-------TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred C-CCCEEEEEeC-CcEEEEECCCCCc-------ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 9 6788888886 9999999987410 011111223456999999999999999885 6999999998877655
Q ss_pred EcCCCCCC----------------eEEEEEeCCCCeEEEEEeCC
Q 035500 572 FTDMHREP----------------INVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 572 l~~gH~~~----------------I~sV~fsP~g~~LLaTgS~D 599 (606)
.. .+... +..++|+|+|++++ +++.|
T Consensus 188 ~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d 229 (741)
T 2ecf_A 188 TA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARID 229 (741)
T ss_dssp CC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEE
T ss_pred cc-CCccceeccccceeeeeccccccceEECCCCCEEE-EEEEc
Confidence 44 33332 47899999999754 44444
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.29 E-value=1.9e-10 Score=117.11 Aligned_cols=148 Identities=9% Similarity=0.059 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+..++|+| +++++++++ .++.|.+||..+++....+. .+...+.+++|+| ++..+++++.++.|.+||..+.
T Consensus 143 ~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-- 216 (353)
T 3vgz_A 143 PRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--NTGKMSTGLALDS-EGKRLYTTNADGELITIDTADN-- 216 (353)
T ss_dssp EEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEEC--CCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTT--
T ss_pred CceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEec--CCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCC--
Confidence 67889999 888777765 48999999999998887665 3445588899998 5678888999999999999873
Q ss_pred CcccccCCcceEEeec-----CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 518 KVADARGNSSVATYYD-----FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~-----~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
..+..+.. ...+.+++|+|+++.++.++ .++.|.+||+.+++.+..+..++ ...++|+|++.+
T Consensus 217 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~ 285 (353)
T 3vgz_A 217 --------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNE 285 (353)
T ss_dssp --------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTE
T ss_pred --------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCE
Confidence 33333332 23478899999998666665 45999999999999988887432 256999999998
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
+++++..++.|..
T Consensus 286 l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 286 AYVTHRQAGKVSV 298 (353)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 8888888887764
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.27 E-value=1.1e-10 Score=119.88 Aligned_cols=155 Identities=8% Similarity=0.023 Sum_probs=109.9
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
+..++|+| +++ +++++. ++.|++||+.++..........+...+..++|+| ++.++++++ .+++|.+||+...
T Consensus 42 p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 42 PTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp CCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCC
Confidence 66789999 887 554443 6899999998776433222235667789999999 567777777 7899999999742
Q ss_pred CCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCcee--EEEcCCCCCCeEE
Q 035500 516 PPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSKNVALYDIN-TEKPL--QLFTDMHREPINV 582 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-t~k~v--~~l~~gH~~~I~s 582 (606)
.. ...+..+... ..+.+++|+|+|+++++...++.|.+||+. +++.. ..+.......+..
T Consensus 119 g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 119 GA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp SC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred CC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 11 1122233221 238899999999977777778999999999 55432 2233223347888
Q ss_pred EEEeCCCCeEEEEEeCCCeEEE
Q 035500 583 AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtIRc 604 (606)
++|+|+|+++++++..++.|+.
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEE
Confidence 9999999988888888887754
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.27 E-value=2.8e-10 Score=115.42 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=110.5
Q ss_pred EEEEcCCCCCEEEEEeC-CCcEEEEECCCCce-EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC---eEEEEeCCCCC
Q 035500 442 QFEYNPSNPSLMAFGTL-DGEVIVINHENGNV-ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG---CVRLFDLNHIP 516 (606)
Q Consensus 442 slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~-v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg---tIklWDl~~~~ 516 (606)
.++|+| +++++++++. ++.|++||..+++. ...+. .+..+..+++|+| ++.+++++..++ .|.+||+..
T Consensus 44 ~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~-- 117 (331)
T 3u4y_A 44 DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLK-- 117 (331)
T ss_dssp EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTT--
T ss_pred eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCC--
Confidence 889999 8886666555 89999999999887 55443 4555555599999 567777555553 999999987
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEEeCCCc-EEEEECCCCcee-----EEEcCCCCCCeEEEEEeCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASGYSKN-VALYDINTEKPL-----QLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs~Dg~-I~IWDlrt~k~v-----~~l~~gH~~~I~sV~fsP~g 589 (606)
...+..+.......+++|+|+|+ +++++..++. |.+|++.....+ ..+. +......++|+|+|
T Consensus 118 --------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg 187 (331)
T 3u4y_A 118 --------NKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDG 187 (331)
T ss_dssp --------TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTS
T ss_pred --------CCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCC
Confidence 34556666666789999999997 5555566688 999999864332 2222 34668999999999
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
+++++++..++.|+.
T Consensus 188 ~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 188 NFAFVANLIGNSIGI 202 (331)
T ss_dssp SEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCeEEE
Confidence 988888888888764
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.27 E-value=1.7e-10 Score=116.56 Aligned_cols=156 Identities=8% Similarity=0.045 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~~ 517 (606)
+..++|+| +++++++++. ++.|.+||+..+..............+.+++|+| ++..+++++ .|+.|.+||+.....
T Consensus 86 ~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 86 LTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc
Confidence 67899999 8887766654 8999999995333222222223344688999999 556666666 899999999986211
Q ss_pred CcccccCCcceE--Eee--cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCC--Cce--eEEEc---CCC--CCCeEEE
Q 035500 518 KVADARGNSSVA--TYY--DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINT--EKP--LQLFT---DMH--REPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~--t~~--~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt--~k~--v~~l~---~gH--~~~I~sV 583 (606)
..... ... ....+.+++|+|++++++++ ..++.|.+||+.. ++. ...+. .+| ...+..+
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 164 -------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp -------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred -------eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 01111 222 23468899999999966555 4789999999964 433 22222 111 2457789
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
+|+|++.+++++++.|+.|+.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEecCCCEEEE
Confidence 999999988888888888764
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=6.4e-12 Score=118.74 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=118.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +.++...-..-+.|+|++|+|..+..++.+++|.+|+|+ .|.|+.++++.|..+|+|+.|.+
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEEC
Confidence 368999999976652 344444333678899999999999989999999999999 88999999888999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|+|..+ ..+..+..+|+|+.
T Consensus 96 ~~N~i~~~-~~~~~l~~l~~L~~--------------------------------------------------------- 117 (176)
T 1a9n_A 96 TNNSLVEL-GDLDPLASLKSLTY--------------------------------------------------------- 117 (176)
T ss_dssp CSCCCCCG-GGGGGGGGCTTCCE---------------------------------------------------------
T ss_pred CCCcCCcc-hhhHhhhcCCCCCE---------------------------------------------------------
Confidence 99999765 22334556666654
Q ss_pred ccchhhhhccCCCCCCCcceecccccCCCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceeccC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVNDSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLDN 339 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~ 339 (606)
+.+.+||++..+.||.+++..+|+|+.+|.
T Consensus 118 --------------------------------------------------L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 118 --------------------------------------------------LCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp --------------------------------------------------EECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred --------------------------------------------------EEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 446678888889999999999999999999
Q ss_pred CCCCcchHHHHHHHhh
Q 035500 340 LPIGRLDREIAKSVFA 355 (606)
Q Consensus 340 ~~i~~~eRe~A~~ifS 355 (606)
......+|..|...|.
T Consensus 148 ~~n~~~~~~~~~~~~~ 163 (176)
T 1a9n_A 148 QKVKLKERQEAEKMFK 163 (176)
T ss_dssp EECCHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHh
Confidence 9999999988887665
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.25 E-value=1.8e-10 Score=116.86 Aligned_cols=144 Identities=11% Similarity=0.030 Sum_probs=107.8
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCCCCCccccc
Q 035500 445 YNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 445 fsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~~~~~~~l~ 523 (606)
|.+.....+++++.+++|++||..+++....+. .+...+ +++|+|+ +..+++++ .++.|.+||..++.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~------- 73 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEP------- 73 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSS-------
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCc-------
Confidence 555355568888899999999999999887665 344556 9999994 55555554 58999999998742
Q ss_pred CCcceEEeecCCCeEE-EEEccCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 524 GNSSVATYYDFEQLTS-VHVNSTDDQFLASGYSK---NVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 524 ~~~~i~t~~~~~~V~s-V~~sp~g~~LaSgs~Dg---~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.....+..+..... ++|+|++++++++..++ .|.+||+.+++.+..+. +......++|+|+|.++++++..+
T Consensus 74 --~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 74 --PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp --CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT
T ss_pred --eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC
Confidence 11445554444444 99999999888555553 89999999999988887 345679999999999888888876
Q ss_pred Ce-EE
Q 035500 600 TM-SR 603 (606)
Q Consensus 600 gt-IR 603 (606)
+. ++
T Consensus 150 ~~~i~ 154 (331)
T 3u4y_A 150 ANTVR 154 (331)
T ss_dssp TTEEE
T ss_pred CceEE
Confidence 66 65
No 143
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.24 E-value=2e-10 Score=128.09 Aligned_cols=148 Identities=7% Similarity=-0.025 Sum_probs=118.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEee----CCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLK----KYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp----~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++|+| +++++++++.|++|++||+ .+++.+..+. +...+.+++|+| + +.++++++ .+++|.+||.
T Consensus 181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE---CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEET
T ss_pred cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe---cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEec
Confidence 56889999 9999999999999999999 8888877665 344689999998 5 46777777 5899999998
Q ss_pred CCCCCCcccccCCcceEEeec------------CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeE--EEcCCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD------------FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQ--LFTDMHR 577 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~------------~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~--~l~~gH~ 577 (606)
.+. .++.++.. ...+.++.++|++. ++++...++.|.+||..+.+.+. .+. +.
T Consensus 256 ~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~ 323 (543)
T 1nir_A 256 ETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AA 323 (543)
T ss_dssp TTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CC
T ss_pred ccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cC
Confidence 873 34444432 22589999999875 66677788999999999876544 443 56
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+..+.|+|+++++++++..|++|+.
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred cCccCceECCCCCEEEEEecCCCeEEE
Confidence 778899999999998888888888764
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.23 E-value=4.1e-10 Score=115.61 Aligned_cols=156 Identities=8% Similarity=0.058 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccC-CCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIG-GTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~g-H~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl~~~~ 516 (606)
+.+++|+| ++++++++..++.|++|++. +++......... ....+..++|+| ++. .++++..++.|.+|++....
T Consensus 143 ~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 143 IHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC
Confidence 67899999 88877777789999999998 555433222112 233678899999 456 45556788999999987521
Q ss_pred CCcccccCCcceEEeec-------CCCeEEEEEccCCCEE-EEEeCCCcEEEEECCC-C--ceeEEEcCCCCCCeEEEEE
Q 035500 517 PKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQF-LASGYSKNVALYDINT-E--KPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~L-aSgs~Dg~I~IWDlrt-~--k~v~~l~~gH~~~I~sV~f 585 (606)
.. ...+..... ...+..++|+|+|+++ ++...++.|.+||+.. + +.+..+. .|...+..++|
T Consensus 221 g~------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~ 293 (347)
T 3hfq_A 221 GA------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDL 293 (347)
T ss_dssp TE------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEE
T ss_pred Cc------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEE
Confidence 10 011222221 1348899999999966 5666789999999973 2 4455666 46677899999
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+++++++++..++.|+.
T Consensus 294 spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp CTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCcEEE
Confidence 9999987777777677754
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.19 E-value=1.1e-10 Score=131.98 Aligned_cols=144 Identities=9% Similarity=0.067 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
|.+++||| ||++||+++.+ +.+++||+.+++........+|...+..++|+| ++..|+.++. +.|++|
T Consensus 63 v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 63 AIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp CSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEE
T ss_pred cceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEE
Confidence 77899999 99999999875 788899999887633222235556688999999 5678888876 799999
Q ss_pred eCCCCCCCcccccCCcceEEeec-CC------------------CeEEEEEccCCCEEEEEeCCC---------------
Q 035500 511 DLNHIPPKVADARGNSSVATYYD-FE------------------QLTSVHVNSTDDQFLASGYSK--------------- 556 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~-~~------------------~V~sV~~sp~g~~LaSgs~Dg--------------- 556 (606)
|+.++. ....... .. .+.+++|+|+|+.|++++.|+
T Consensus 140 ~~~~g~----------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 140 AHVGKQ----------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp SSSSSC----------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred ECCCCc----------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 998742 2222221 22 237899999999999887553
Q ss_pred -------------------cEEEEECCCCceeEEEcCC-----CCCCeEEEEEeCCCCeEEEEE
Q 035500 557 -------------------NVALYDINTEKPLQLFTDM-----HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 557 -------------------~I~IWDlrt~k~v~~l~~g-----H~~~I~sV~fsP~g~~LLaTg 596 (606)
.|++||+.+++....+... |...+..++|+|+|+.+++..
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 7999999998866666521 267899999999998654443
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.19 E-value=2.6e-11 Score=137.14 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=106.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC---CEEEEEEeeCCCCEEEEEECC---------CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN---SVLGLCWLKKYPSKLVAGSDS---------GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~---~V~~L~fsp~~~~~LaSgS~D---------gtI 507 (606)
+.+++|+| +|+++++ +.||+|++||..+++....+. +|.. .|.+++|+| ++++|++++.+ +.+
T Consensus 19 ~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEec--cccccccccceEEECC-CCCEEEEEecCccceeecceeeE
Confidence 45678999 8887776 789999999999988766554 5554 499999999 67889998875 788
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC-------
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP------- 579 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~------- 579 (606)
.+||+.++.. ..+..... ...+..++|+|+|+.++.++. +.|++||+.+++..+... .+...
T Consensus 94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~ 163 (723)
T 1xfd_A 94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLS 163 (723)
T ss_dssp EEEESSSCCC--------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEEC
T ss_pred EEEECCCCce--------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECccc
Confidence 8999987421 01111112 233889999999999999886 799999999988776665 33333
Q ss_pred -----------eEEEEEeCCCCeEEEEE
Q 035500 580 -----------INVAKFSHHSPLCLLLL 596 (606)
Q Consensus 580 -----------I~sV~fsP~g~~LLaTg 596 (606)
+.+++|+|+|++++.++
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 37899999999754443
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.16 E-value=5.4e-10 Score=112.51 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=102.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+++++++.+++|++||..+++....+.. ++.. .+.+++|+|++...+++++.++.|.+||+.++ ..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~----------~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG----------ETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----------CEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----------CeEe
Confidence 4789999999999999999988876653 3322 47889999954344567777899999999873 2344
Q ss_pred EeecCC------CeEEEEEccCCCEEEEEe------------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 530 TYYDFE------QLTSVHVNSTDDQFLASG------------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~~~------~V~sV~~sp~g~~LaSgs------------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.+.... .+.+++|+|+++.+++++ .++.|.+||+.+++.+..+.. ...+..++|+|++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSK 148 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSC
T ss_pred eEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCE
Confidence 444322 577899999999888886 579999999999988887773 456888999999997
Q ss_pred EEEE
Q 035500 592 CLLL 595 (606)
Q Consensus 592 LLaT 595 (606)
++++
T Consensus 149 l~~~ 152 (337)
T 1pby_B 149 LYGL 152 (337)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.15 E-value=3.7e-10 Score=114.52 Aligned_cols=155 Identities=13% Similarity=-0.007 Sum_probs=106.0
Q ss_pred eeEEEEcCCCCCEEEEEeCC------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
+..++|+| +++++++++.+ +.|.+||+.+++.........+...+.+++|+|+ +. ++.++. .|
T Consensus 94 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~-l~~~~~--~i 168 (349)
T 1jmx_B 94 MYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GS-LYVAGP--DI 168 (349)
T ss_dssp SSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SC-EEEESS--SE
T ss_pred ccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC-Cc-EEEccC--cE
Confidence 56789999 99999998866 9999999988554332222234446889999994 45 555543 49
Q ss_pred EEEeCCCCCCCcccccCC-------------------------cce-EEe------------------------------
Q 035500 508 RLFDLNHIPPKVADARGN-------------------------SSV-ATY------------------------------ 531 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~-------------------------~~i-~t~------------------------------ 531 (606)
.+||..++.......... .+. ..+
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 999987753211000000 000 000
Q ss_pred ---ecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 532 ---YDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 532 ---~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....+.+++|+| ++++++++ ++.|.+||+.+++.+..+.. ...+..++|+|++.++++ ++.++.|+.
T Consensus 249 ~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~-~~~~~~v~v 320 (349)
T 1jmx_B 249 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYL-GGTFNDLAV 320 (349)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEE-ESBSSEEEE
T ss_pred ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEE-ecCCCeEEE
Confidence 0112466888999 99988888 78999999999998888873 345789999999997665 677787764
No 149
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.15 E-value=3.6e-10 Score=127.76 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEEeccCCCCCEE
Q 035500 440 PRQFEYNPSNPSLMAFGT---------------------------------LDGEVIVINHENGNVACYIPSIGGTNSVL 486 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs---------------------------------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~ 486 (606)
+.+++|+| |+++||+++ .+++|++||+.+++........+|...+.
T Consensus 183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 261 (706)
T 2z3z_A 183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT 261 (706)
T ss_dssp CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence 46788999 999999998 45789999999887655433235777899
Q ss_pred EEEEeeCCCCEEEEEECCC-----eEEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEEcc--CCCEEEEEeCCC
Q 035500 487 GLCWLKKYPSKLVAGSDSG-----CVRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHVNS--TDDQFLASGYSK 556 (606)
Q Consensus 487 ~L~fsp~~~~~LaSgS~Dg-----tIklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp--~g~~LaSgs~Dg 556 (606)
.++|+| ++..+++++.|+ .|.+||+.++.. ...+...... ..+.+++|+| +|+++++++.|+
T Consensus 262 ~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-------~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 262 NLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-------VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp EEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-------EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred eEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-------eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 999999 668888888776 999999987411 0111111121 1246789999 999999999999
Q ss_pred cEEEEECC-CCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCC
Q 035500 557 NVALYDIN-TEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 557 ~I~IWDlr-t~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~Dg 600 (606)
.+++|++. ++..+..+. .|...+.. ++|+|++..++++++.++
T Consensus 334 ~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred ccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 99999887 667777777 57777877 899999998888887765
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.14 E-value=3.3e-09 Score=109.62 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=106.2
Q ss_pred eeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCc-------eE-----EEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCC
Q 035500 440 PRQFEYNPSNPSLMAFGT-LDGEVIVINHENGN-------VA-----CYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSG 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~-------~v-----~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~Dg 505 (606)
+.+++|+| +++++++++ .++.|++|++.... .. .... ..+...+..++|+| ++.+++.++ .++
T Consensus 157 ~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~v~~~~~~ 233 (361)
T 3scy_A 157 LHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNS-DGKFAYLINEIGG 233 (361)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECT-TSSEEEEEETTTC
T ss_pred ceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcC-CCCEEEEEcCCCC
Confidence 57789999 888665554 58999999887533 21 1222 24455688999999 556666666 799
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeC--CCcEEEEECC--CCc--eeEEEcCC
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGY--SKNVALYDIN--TEK--PLQLFTDM 575 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlr--t~k--~v~~l~~g 575 (606)
+|.+||+..+. ...+.... +......++|+|+|++++++.. ++.|.+|++. +++ .+..+. .
T Consensus 234 ~v~v~~~~~g~--------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~ 304 (361)
T 3scy_A 234 TVIAFRYADGM--------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T 304 (361)
T ss_dssp EEEEEEEETTE--------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C
T ss_pred eEEEEEecCCc--------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C
Confidence 99999998531 11222222 1234789999999998866655 4899999996 454 344444 2
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+..++|+|+|+++++++..++.|+.
T Consensus 305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 305 -GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp -SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred -CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 4578899999999988777777787765
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.14 E-value=8.5e-10 Score=111.08 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE------------C
Q 035500 440 PRQFEYNPSNPSLM-AFGTLDGEVIVINHENGNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGS------------D 503 (606)
Q Consensus 440 V~slafsP~dg~~L-aSGs~DGtVrIWDi~tg~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS------------~ 503 (606)
+..++|+| +++.+ ++++.++.|.+||..+++....+.... |...+.+++|+| ++..+++++ .
T Consensus 36 ~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 36 PMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred ccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 56788999 77655 566678999999999998877665322 122577899998 567777775 5
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
++.|.+||..+ ...+..+.....+.+++|+|++++++++ ++.|.+||+.+++.+..+.
T Consensus 114 ~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 114 PTRVALYDAET----------LSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp CCEEEEEETTT----------TEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCC----------CcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 79999999987 3345555555668889999999977777 5889999999887766554
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.14 E-value=3e-10 Score=125.94 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=108.4
Q ss_pred EEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----CeEEEEeCCCCC
Q 035500 442 QFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS----GCVRLFDLNHIP 516 (606)
Q Consensus 442 slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D----gtIklWDl~~~~ 516 (606)
..+|+| +++ .+++++.++.+.+||+.+++...... +.. .+++|+| ++.++++++.| ++|++||+.++.
T Consensus 114 ~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 114 ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELAR---LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEE---ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred eeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeec---CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 457888 553 34444444555699999887655432 222 7899999 67889988877 789999988742
Q ss_pred CCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCCCeEEEE--------E
Q 035500 517 PKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSK--NVALYDINTEKPLQLFTDMHREPINVAK--------F 585 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~--------f 585 (606)
. ..+. +...+.+++|+|+|+.+++++.++ .|++||+.+++.. .+. +|...+..+. |
T Consensus 187 ----------~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 187 ----------L-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp ----------C-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEE
T ss_pred ----------c-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhccccceeE
Confidence 2 2333 445589999999999999888888 8999999998877 666 6877787777 9
Q ss_pred eCCCCeEEEEEeCCCeEEE
Q 035500 586 SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtIRc 604 (606)
+|+| .++++++.|++++.
T Consensus 254 spdg-~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 254 LPDG-RLAVVARREGRSAV 271 (582)
T ss_dssp CTTS-CEEEEEEETTEEEE
T ss_pred cCCC-cEEEEEEcCCcEEE
Confidence 9999 68999999998875
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=132.67 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=102.6
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC---CEEEEEEeeCCCCEEEEEEC---------CCeEEE
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN---SVLGLCWLKKYPSKLVAGSD---------SGCVRL 509 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~---~V~~L~fsp~~~~~LaSgS~---------DgtIkl 509 (606)
+++|+| ++.+++ ++.||+|++||..+++...... +|.. .+.+++|+| ++++|++++. |++|++
T Consensus 20 ~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWIS-GQEYLH-QSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESS-SSEEEE-ECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECC-CCeEEE-EcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEE
Confidence 457999 886555 4569999999999988766543 3322 488999999 6788888876 799999
Q ss_pred EeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe---------
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI--------- 580 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I--------- 580 (606)
||+.++.. +........+.+++|+|+|+.++.++ ++.|++||+.+++..+....++...|
T Consensus 95 ~d~~~g~~----------~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 95 YDLSNGEF----------VRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp EETTTTEE----------CCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred EECCCCcc----------ccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 99987421 00001124588899999999999886 68999999998877554433444433
Q ss_pred --------EEEEEeCCCCeEEEEEeCC
Q 035500 581 --------NVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 581 --------~sV~fsP~g~~LLaTgS~D 599 (606)
.+++|+|+|+++ ++++.|
T Consensus 164 ~ee~~~~~~~~~wSPDG~~l-a~~~~d 189 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFL-AYAEFN 189 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEE-EEEEEE
T ss_pred eeecccCcccEEECCCCCEE-EEEEEC
Confidence 489999999974 455443
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.10 E-value=4.3e-10 Score=114.05 Aligned_cols=136 Identities=8% Similarity=0.060 Sum_probs=102.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccccc
Q 035500 444 EYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADAR 523 (606)
Q Consensus 444 afsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~ 523 (606)
++++ ++.++++++.+++|++||..+++....+.. +....+..++|+|++...+++++.++.|.+||+.++
T Consensus 6 ~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-------- 75 (349)
T 1jmx_B 6 ALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-------- 75 (349)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--------
T ss_pred cccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--------
Confidence 4666 788999999999999999999988876653 222357889999854334566678999999999873
Q ss_pred CCcceEEeecC-------CCeEEEEEccCCCEEEEEeCC------------CcEEEEECCCCc---eeEEEcCCCCCCeE
Q 035500 524 GNSSVATYYDF-------EQLTSVHVNSTDDQFLASGYS------------KNVALYDINTEK---PLQLFTDMHREPIN 581 (606)
Q Consensus 524 ~~~~i~t~~~~-------~~V~sV~~sp~g~~LaSgs~D------------g~I~IWDlrt~k---~v~~l~~gH~~~I~ 581 (606)
..+..+... ..+.+++|+|+|+++++++.+ +.|.+||+.+++ .+..+. +...+.
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~ 151 (349)
T 1jmx_B 76 --KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVY 151 (349)
T ss_dssp --EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCC
T ss_pred --cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCccc
Confidence 334444422 127889999999999888865 899999999854 344555 345788
Q ss_pred EEEEeCCCCeEEE
Q 035500 582 VAKFSHHSPLCLL 594 (606)
Q Consensus 582 sV~fsP~g~~LLa 594 (606)
+++|+|++. +++
T Consensus 152 ~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 152 LMRAADDGS-LYV 163 (349)
T ss_dssp CEEECTTSC-EEE
T ss_pred ceeECCCCc-EEE
Confidence 999999998 665
No 155
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.10 E-value=5.4e-10 Score=126.87 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=110.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC---------------------------------cEEEEECCC-CceEEEEeccCCCCCE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG---------------------------------EVIVINHEN-GNVACYIPSIGGTNSV 485 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG---------------------------------tVrIWDi~t-g~~v~~~~~~gH~~~V 485 (606)
+.+++||| |+++|++++.|+ .|++||+.+ ++........+|...+
T Consensus 211 ~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 289 (741)
T 2ecf_A 211 HTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYL 289 (741)
T ss_dssp CCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEE
T ss_pred ccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEE
Confidence 46789999 999999998776 889999988 7765432212577889
Q ss_pred EEEEEeeCCCCEEEEEEC-----CCeEEEEeCCCCCCCcccccCCcceEEeecCC-----CeEEEEEccCCCEEEEEeCC
Q 035500 486 LGLCWLKKYPSKLVAGSD-----SGCVRLFDLNHIPPKVADARGNSSVATYYDFE-----QLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 486 ~~L~fsp~~~~~LaSgS~-----DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~-----~V~sV~~sp~g~~LaSgs~D 555 (606)
..++| | ++..|+.++. +..|.+||+.++ .....+..+. .+.+++|+|+|+++++++.|
T Consensus 290 ~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g----------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 290 ARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASN----------QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT 357 (741)
T ss_dssp EEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTC----------CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT
T ss_pred EEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCC----------ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC
Confidence 99999 9 5677776553 678999999874 2333333222 45689999999999999999
Q ss_pred CcEEEEECC-CCceeEEEcCCCCCCeEEE-EEeCCCCeEEEEEeCCC
Q 035500 556 KNVALYDIN-TEKPLQLFTDMHREPINVA-KFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 556 g~I~IWDlr-t~k~v~~l~~gH~~~I~sV-~fsP~g~~LLaTgS~Dg 600 (606)
+.+++|.+. .++ ...+. .|...|..+ .|+|++..++++++.|+
T Consensus 358 g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 358 GFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp SSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred CccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 988888776 345 66776 577888887 59999998888888775
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.08 E-value=4.3e-10 Score=127.11 Aligned_cols=149 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC-----CceEEEEeccCCCCC--------------EEEEEEeeCCCCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN-----GNVACYIPSIGGTNS--------------VLGLCWLKKYPSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t-----g~~v~~~~~~gH~~~--------------V~~L~fsp~~~~~LaS 500 (606)
+.+++|+| +|+.+|++ .|+.|++||+.+ ++...... .+... +.+++|+| ++.+|++
T Consensus 123 ~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~--~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~ 197 (706)
T 2z3z_A 123 TASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI--DGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAF 197 (706)
T ss_dssp CTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS--CCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEE
T ss_pred ccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEecc--CCCCCeEcccchhhhhcCCCceEEECC-CCCEEEE
Confidence 56778999 99999995 689999999988 77654322 23222 47899999 6788888
Q ss_pred EE---------------------------------CCCeEEEEeCCCCCCCcccccCCcceEEe---ecCCCeEEEEEcc
Q 035500 501 GS---------------------------------DSGCVRLFDLNHIPPKVADARGNSSVATY---YDFEQLTSVHVNS 544 (606)
Q Consensus 501 gS---------------------------------~DgtIklWDl~~~~~~~~~l~~~~~i~t~---~~~~~V~sV~~sp 544 (606)
++ .+..|.+||+.++. ..... .+...+.+++|+|
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK----------TVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE----------EEECCCCSCTTCEEEEEEECT
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc----------eEeeccCCCCceeEeeEEEEC
Confidence 87 45789999998742 11111 1234589999999
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce-eEEEcCCCCC---CeEEEEEeC--CCCeEEEEEeCCCeEEE
Q 035500 545 TDDQFLASGYSK-----NVALYDINTEKP-LQLFTDMHRE---PINVAKFSH--HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 545 ~g~~LaSgs~Dg-----~I~IWDlrt~k~-v~~l~~gH~~---~I~sV~fsP--~g~~LLaTgS~DgtIRc 604 (606)
+|+.+++++.++ .|.+||+.+++. .......+.. .+..++|+| +|. ++++++.|+.+++
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l 337 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHL 337 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEE
Confidence 999999888775 899999999843 3333212222 346789999 887 5778888886654
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.08 E-value=1.3e-09 Score=129.93 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEE-EEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVI-VINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVr-IWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|+ +++.+++++.++.+. +||..+++... + .+|...+..++|+| ++.+|++++.++.|++||+.++
T Consensus 340 ~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l--~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg--- 410 (1045)
T 1k32_A 340 YVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-F--EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG--- 410 (1045)
T ss_dssp EEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-C--CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC---
T ss_pred EEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-e--cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCC---
Confidence 6788898 888999999888888 99998776543 2 27888999999999 6789999999999999999873
Q ss_pred cccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCC----------cEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 519 VADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSK----------NVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg----------~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
...... .+...+.+++|+|+|+++++++.++ .|++||+.+++ +..+. .|...+..++|+|
T Consensus 411 -------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~sp 481 (1045)
T 1k32_A 411 -------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDA 481 (1045)
T ss_dssp -------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECT
T ss_pred -------ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcC
Confidence 233444 3456689999999999998887654 89999999887 56666 5888899999999
Q ss_pred CCCeEEEEEeCC
Q 035500 588 HSPLCLLLLHLT 599 (606)
Q Consensus 588 ~g~~LLaTgS~D 599 (606)
+|++++ .++.+
T Consensus 482 dG~~l~-~~s~~ 492 (1045)
T 1k32_A 482 DSKNLY-YLSYR 492 (1045)
T ss_dssp TSCEEE-EEESC
T ss_pred CCCEEE-EEecc
Confidence 999755 44443
No 158
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.06 E-value=1.2e-09 Score=130.10 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=114.3
Q ss_pred eeEEEEc-CCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCC-CEEEEEEeeCCCCEEEEEECCCeEE-EEeCCCCC
Q 035500 440 PRQFEYN-PSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTN-SVLGLCWLKKYPSKLVAGSDSGCVR-LFDLNHIP 516 (606)
Q Consensus 440 V~slafs-P~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~-~V~~L~fsp~~~~~LaSgS~DgtIk-lWDl~~~~ 516 (606)
+.+++|+ | +++.+|+++ ++.|++|+..++.... ...|.. .+..++|+ ++..+++++.++.+. +||.....
T Consensus 298 v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 298 KFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE---ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 6789999 9 999999888 8899999998877543 346777 89999999 567888888888888 88987631
Q ss_pred CCcccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 517 PKVADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ .+...+..++|+|+|+++++++.++.|++||+.+++...... +|...+..++|+|+|++++++
T Consensus 371 -----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 371 -----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp -----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEE
T ss_pred -----------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEE
Confidence 1222 334669999999999999999999999999999999888776 689999999999999986554
Q ss_pred Ee
Q 035500 596 LH 597 (606)
Q Consensus 596 gS 597 (606)
+.
T Consensus 439 ~~ 440 (1045)
T 1k32_A 439 FP 440 (1045)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.04 E-value=2.7e-09 Score=111.40 Aligned_cols=155 Identities=6% Similarity=-0.047 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCceEEEEeccCCCCCEEEEEEeeCCCC--EEEEEE-------------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-NGNVACYIPSIGGTNSVLGLCWLKKYPS--KLVAGS-------------D 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-tg~~v~~~~~~gH~~~V~~L~fsp~~~~--~LaSgS-------------~ 503 (606)
+..++|+| +++++++++.+ .|.+|++. +++.........+ +.+..++|+| +++ ++++++ .
T Consensus 42 ~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 67889999 99999999888 99999997 7776543321111 2355688998 445 344553 6
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC-CCcee--EEEcC-CC
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASG-YSKNVALYDIN-TEKPL--QLFTD-MH 576 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlr-t~k~v--~~l~~-gH 576 (606)
+|++.+|++...... ...+..+. +...+.+++|+|+|+++++++ .++.|++||+. +++.. ..+.. .|
T Consensus 118 ~g~v~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 118 AGYGNVFSVSETGKL------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp CCEEEEEEECTTCCE------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CceEEEEccCCCCcC------cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 999999999752110 01122222 345699999999999887765 46899999998 67653 33331 24
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 ~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
...+..++|+|+|+++++++..++.|+.
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 5679999999999987776666777654
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.01 E-value=2.9e-08 Score=102.45 Aligned_cols=157 Identities=11% Similarity=0.134 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCC----CcEEEEECCC--CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----GEVIVINHEN--GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----GtVrIWDi~t--g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl 512 (606)
+..++|+| +++++++++.+ |.|.+|++.. +..........+......+++ ++..+++++ .+++|.+|++
T Consensus 52 p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 52 PSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp CCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEB
T ss_pred CceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEe
Confidence 67789999 99999999886 8999998765 544332222245566778887 345665555 6889999999
Q ss_pred CCCCCCcccccCCcceEEeec---------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCce------e------E
Q 035500 513 NHIPPKVADARGNSSVATYYD---------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKP------L------Q 570 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~---------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~------v------~ 570 (606)
........ ........+ ...+.+++|+|+|+++++++ .++.|.+|++..... + .
T Consensus 128 ~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 128 GQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp CTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred CCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 75322100 000111111 12258899999998665554 579999999885431 1 2
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....+......++|+|+|+++++++..++.|+.
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA 237 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence 2232355678899999999987777767887764
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.01 E-value=6.3e-10 Score=126.19 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL---------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++||| ||++||+++. |++|++||+.+++.+..... ...+..++|+| ++..|+.++ |++|++|
T Consensus 62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEE
T ss_pred eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEEEE
Confidence 66889999 9999999887 79999999998876321111 24588999999 567787775 7899999
Q ss_pred eCCCCCCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCC------------------------
Q 035500 511 DLNHIPPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSK------------------------ 556 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg------------------------ 556 (606)
|+.++........ ......+.++ ....+++|+|+|+.|++++.|.
T Consensus 136 ~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 136 QRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp SSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred eCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 9987432100000 0000011111 1125899999999999987652
Q ss_pred ----------cEEEEECCCCcee--EE------EcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 557 ----------NVALYDINTEKPL--QL------FTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 557 ----------~I~IWDlrt~k~v--~~------l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
.|++||+.+++.. .. +. +|...+..++|+|++. +++++
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SpD~~-~~~~~ 270 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVTDER-VCLQW 270 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESSSSE-EEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeCCCe-EEEEE
Confidence 7889999988753 11 23 5888899999999965 55553
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.00 E-value=1.9e-09 Score=119.44 Aligned_cols=137 Identities=8% Similarity=-0.093 Sum_probs=106.8
Q ss_pred eEEEEcCCCCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCC
Q 035500 441 RQFEYNPSNPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNH 514 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~ 514 (606)
.+++|+| ||+++|+++.| ++|++||+.+++... +.+|.+.+..++|+| ++..|+++..++ .|.+||+.+
T Consensus 153 ~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~---l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV---FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEE---ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT
T ss_pred ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceE---eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC
Confidence 4678999 99999988887 889999999887653 347888899999999 678888888899 899999987
Q ss_pred CCCCcccccCCcceEEeec-CCCeEEEE--------EccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 515 IPPKVADARGNSSVATYYD-FEQLTSVH--------VNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~~-~~~V~sV~--------~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
+. .. .+.. ...+.+++ |+|+|.++++++.|+++++|++ ++... .+.+.|.+++|
T Consensus 228 ~~----------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~ 290 (582)
T 3o4h_A 228 GS----------VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVL 290 (582)
T ss_dssp CC----------EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEE
T ss_pred Cc----------EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEe
Confidence 42 22 3333 23355555 9999999999999999999999 65544 24467899999
Q ss_pred eCCCCeEEEEEeCCCe
Q 035500 586 SHHSPLCLLLLHLTTM 601 (606)
Q Consensus 586 sP~g~~LLaTgS~Dgt 601 (606)
+ ++.. +++++.+.+
T Consensus 291 s-dg~~-l~~~s~~~~ 304 (582)
T 3o4h_A 291 W-RGKL-VTSHTSLST 304 (582)
T ss_dssp E-TTEE-EEEEEETTE
T ss_pred c-CCEE-EEEEcCCCC
Confidence 9 7764 566666643
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.00 E-value=1.8e-09 Score=123.95 Aligned_cols=140 Identities=9% Similarity=0.051 Sum_probs=101.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCC-----EEEEEEeeCCCCEEEEEECC---------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNS-----VLGLCWLKKYPSKLVAGSDS---------G 505 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~-----V~~L~fsp~~~~~LaSgS~D---------g 505 (606)
..+++|+| ++.+++++ ||+|++||+.+++....+. +|... ..+++|+| ++.+++.++.+ +
T Consensus 19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccce
Confidence 44678999 88888886 9999999999998776554 55432 24588999 67888888876 5
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCe-----
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPI----- 580 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I----- 580 (606)
.+.+||+.++. ......+...+..++|||+|+.+|.++ |+.|++||+.+++..+.-..++...+
T Consensus 93 ~~~~~d~~~~~----------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 93 SYDIYDLNKRQ----------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEEEETTTTE----------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEEEECCCCc----------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 66799999842 111112345699999999999998885 58999999998876543222343333
Q ss_pred ------------EEEEEeCCCCeEEEEE
Q 035500 581 ------------NVAKFSHHSPLCLLLL 596 (606)
Q Consensus 581 ------------~sV~fsP~g~~LLaTg 596 (606)
..+.|+|+|++|+.+.
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cccccchhcCCCcceEECCCCCEEEEEE
Confidence 3489999999754443
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.97 E-value=1.6e-08 Score=105.49 Aligned_cols=160 Identities=9% Similarity=0.005 Sum_probs=105.1
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEECC-CCceEE--EEeccCCCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-DGEVIVINHE-NGNVAC--YIPSIGGTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNH 514 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-DGtVrIWDi~-tg~~v~--~~~~~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~ 514 (606)
+.+++|+| +++++++++. +++|++||+. +++... .+....|...+..++|+| +++++++++ .+++|.+|++..
T Consensus 147 ~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 147 IHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence 77899999 8988887764 6899999998 776543 222212456799999999 567777766 478999998764
Q ss_pred CCCCcccccCCcceEEee----cCC-------CeEEEE-EccCCCEEEEEeCC-C-----cEEEEECC-CCceeE---EE
Q 035500 515 IPPKVADARGNSSVATYY----DFE-------QLTSVH-VNSTDDQFLASGYS-K-----NVALYDIN-TEKPLQ---LF 572 (606)
Q Consensus 515 ~~~~~~~l~~~~~i~t~~----~~~-------~V~sV~-~sp~g~~LaSgs~D-g-----~I~IWDlr-t~k~v~---~l 572 (606)
........ ...+..+. ++. .+..++ |+|+|+++++++.+ + .|.+|++. +++... ..
T Consensus 225 ~~g~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~ 302 (365)
T 1jof_A 225 ATHMPVYT--HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp TTCCEEEE--EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEc--cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence 11000000 00011111 112 478999 99999987766543 2 89999996 566543 23
Q ss_pred cCCCCCCeEEEEEeC---CCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSH---HSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP---~g~~LLaTgS~DgtIRc 604 (606)
. .+...+..++|+| +|+++++++..++.|+.
T Consensus 303 ~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 303 P-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp E-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred e-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 3 3455677899999 79876555555577764
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.96 E-value=4.7e-08 Score=97.43 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++...++.|.+||.. ++....+...++...+.+++++| ++..+++.+.++.|++||...
T Consensus 123 ~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g----- 194 (286)
T 1q7f_A 123 PRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG----- 194 (286)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-----
T ss_pred ceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-----
Confidence 77899999 88888888889999999965 55555554335556799999998 456777778899999999754
Q ss_pred ccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeEEEcCCCC--CCeEEEEEeCCCCeEE
Q 035500 520 ADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYSK-NVALYDINTEKPLQLFTDMHR--EPINVAKFSHHSPLCL 593 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlrt~k~v~~l~~gH~--~~I~sV~fsP~g~~LL 593 (606)
..+..+... ..+.+++++|+|+++++...++ .|.+||. .++.+..+. .+. ..+..++++|+|. ++
T Consensus 195 ------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~~i~~~~~g~-l~ 265 (286)
T 1q7f_A 195 ------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SKVKHAQCFDVALMDDGS-VV 265 (286)
T ss_dssp ------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ESSCCSCEEEEEEETTTE-EE
T ss_pred ------CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-ccCCCCcceeEEECCCCc-EE
Confidence 233444432 4588999999999999888886 9999995 466666665 232 3478999999986 67
Q ss_pred EEEeCCCeEEE
Q 035500 594 LLLHLTTMSRC 604 (606)
Q Consensus 594 aTgS~DgtIRc 604 (606)
++ +.|+.|+.
T Consensus 266 vs-~~~~~v~v 275 (286)
T 1q7f_A 266 LA-SKDYRLYI 275 (286)
T ss_dssp EE-ETTTEEEE
T ss_pred EE-CCCCeEEE
Confidence 66 56888864
No 166
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=1.5e-10 Score=111.43 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=105.9
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
..++|+|++|+|..+..++.+++|++|.|. .|.|+.++. .+..||+|+.|.+.+|++..+ .++.++++|++|.+
T Consensus 49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l----~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIEN-LDAVADTLEELWISYNQIASL----SGIEKLVNLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSS-HHHHHHHCSEEEEEEEECCCH----HHHHHHHHSSEEEE
T ss_pred CCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccc-hhhcCCcCCEEECcCCcCCcC----CccccCCCCCEEEC
Confidence 467899999999999888899999999999 788998874 577789999999999998876 57888888888886
Q ss_pred ceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhcccchhhhhccCCCCCCCcceeccccc
Q 035500 206 QMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAEMLDEVN 285 (606)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 285 (606)
..+. +..+ ..++.+.-+..|+
T Consensus 123 ~~N~---------------------------------------i~~~---~~~~~l~~l~~L~----------------- 143 (198)
T 1ds9_A 123 SNNK---------------------------------------ITNW---GEIDKLAALDKLE----------------- 143 (198)
T ss_dssp SEEE---------------------------------------CCCH---HHHHHHTTTTTCS-----------------
T ss_pred CCCc---------------------------------------CCch---hHHHHHhcCCCCC-----------------
Confidence 6643 0000 0001111122233
Q ss_pred CCCCCCCCcccccccccchhhhhhhccCCCCcccc-------hhhHHHHHhhCCCceeccCCCCCcchHHHHHH
Q 035500 286 DSNEFPGGAHKQDLMDANVKLKKYISHHPSPICFE-------KHYREYMIASLPQLEVLDNLPIGRLDREIAKS 352 (606)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~-------~~YReyvI~~Lp~LkvLD~~~i~~~eRe~A~~ 352 (606)
++.+.+||+... ..|+..++..+|+|+.||+.++.+.+|..|..
T Consensus 144 -----------------------~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 144 -----------------------DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANV 194 (198)
T ss_dssp -----------------------EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHHHH
T ss_pred -----------------------EEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHHHh
Confidence 666777777765 78999999999999999999999999998853
No 167
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.91 E-value=2.4e-08 Score=106.97 Aligned_cols=133 Identities=8% Similarity=0.003 Sum_probs=104.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
|+.++| ++++|+++ .+|.|++||+.+........ .|...+.++.+.+. .+++++.||++.+||+....
T Consensus 90 V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~--~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~--- 157 (388)
T 1xip_A 90 VIFVCF---HGDQVLVS-TRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS--- 157 (388)
T ss_dssp EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC---
T ss_pred eeEEEE---CCCEEEEE-cCCcEEEEEchhhhccCccc--eeecceeeEEecCC---CEEEEECCCCEEEEEccCCc---
Confidence 678889 78899999 88999999998765544433 66777988887752 39999999999999999732
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eEEE------cC--CCCCCeEEEEEeCCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP--LQLF------TD--MHREPINVAKFSHHS 589 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~--v~~l------~~--gH~~~I~sV~fsP~g 589 (606)
.. .....|.+++|||+| ++.|..||++++|+...++. ..++ .. +|...|.+|.|.+++
T Consensus 158 -------~~---~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 158 -------TK---QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -------EE---EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -------cc---cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 11 133569999999999 78899999999999987775 5566 21 378899999999998
Q ss_pred CeEEEEE
Q 035500 590 PLCLLLL 596 (606)
Q Consensus 590 ~~LLaTg 596 (606)
.++++-+
T Consensus 226 ~flv~y~ 232 (388)
T 1xip_A 226 DFLAVFG 232 (388)
T ss_dssp EEEEEEE
T ss_pred eEEEEEc
Confidence 8766533
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.87 E-value=1.8e-07 Score=96.31 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=116.7
Q ss_pred eeEEEEcCCCCCEEEEEeCC------------------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------------------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYP 495 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------------------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~ 495 (606)
+..++++| +++++++.+.+ ++|.+||..+++....+. .++-....+++++| ++
T Consensus 26 v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~-~g 102 (329)
T 3fvz_A 26 VSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDT-DG 102 (329)
T ss_dssp EEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECT-TS
T ss_pred ceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECC-CC
Confidence 78899999 89999998888 479999999888876443 24556799999998 56
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee----------cCCCeEEEEEcc-CCCEEEEEe-CCCcEEEEEC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNS-TDDQFLASG-YSKNVALYDI 563 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp-~g~~LaSgs-~Dg~I~IWDl 563 (606)
.++++.+.++.|+.||..... ..+..+. +......|+++| ++.++++.+ .++.|++||
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred CEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 788888889999999986531 1233332 123478999999 788888887 689999999
Q ss_pred CCCceeEEEcC---------CCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 564 NTEKPLQLFTD---------MHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 564 rt~k~v~~l~~---------gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..++.+..+.. ++-.....++++|++..++++.+.++.|+.
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 56777766641 123448899999996778999988888875
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.85 E-value=9.8e-08 Score=98.28 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=115.8
Q ss_pred ceeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCceEEEEeccC--------CCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGT-LDGEVIVINHENGNVACYIPSIG--------GTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~g--------H~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
.+..++++|.++.++++.+ .++.|++|| .++..+..+...+ +-....+++++|+++.++++.+.++.|++
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence 3788999997788888886 699999999 5577666553222 22448999999865778888889999999
Q ss_pred EeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEe-------CCCcEEEEECCCCceeEEEc--CCCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASG-------YSKNVALYDINTEKPLQLFT--DMHR 577 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs-------~Dg~I~IWDlrt~k~v~~l~--~gH~ 577 (606)
||..++ ..+.++. ....+.+++++| +..+++.+ .+..|++||..+++.+..+. .++.
T Consensus 223 ~~~~~G----------~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~ 291 (329)
T 3fvz_A 223 FKTDTK----------EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF 291 (329)
T ss_dssp EETTTC----------CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC
T ss_pred EECCCC----------cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc
Confidence 999853 2344443 234588999999 44444433 34589999999999988874 2577
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.....++++|+| .++++.+.++.|+.
T Consensus 292 ~~p~~ia~~~dG-~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 292 DMPHDIVASEDG-TVYIGDAHTNTVWK 317 (329)
T ss_dssp SSEEEEEECTTS-EEEEEESSSCCEEE
T ss_pred CCeeEEEECCCC-CEEEEECCCCEEEE
Confidence 789999999999 68999998988864
No 170
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.85 E-value=2.9e-08 Score=106.38 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN---------VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~---------~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+..+++++ ...++++|+.+| +++|+.+... ..... ...+.+ |+.++| ++..|+.+ .++.|++|
T Consensus 40 ~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 40 LQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 67789999 778999999986 6679865322 11101 124566 999999 45788887 88999999
Q ss_pred eCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 511 DLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
|++.... ......+..++.++.+.+. .+++++.||.+.+||+.++.... +...|++++|+|.|
T Consensus 112 dv~sl~~---------~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 112 DLEELSE---------FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp ESSSTTC---------EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE-
T ss_pred Echhhhc---------cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc-
Confidence 9988421 1112233455788776644 39999999999999999887643 34689999999999
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++.|..||++++
T Consensus 175 --~~vg~~dg~i~~ 186 (388)
T 1xip_A 175 --LAVLLKDRSFQS 186 (388)
T ss_dssp --EEEEETTSCEEE
T ss_pred --eEEEEcCCcEEE
Confidence 467888998876
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.81 E-value=3.3e-08 Score=110.77 Aligned_cols=150 Identities=9% Similarity=-0.112 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC----------CcEEEEECCC------CceEEEEecc-CCCCCEEEEEEeeCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD----------GEVIVINHEN------GNVACYIPSI-GGTNSVLGLCWLKKYPSKLVAGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D----------GtVrIWDi~t------g~~v~~~~~~-gH~~~V~~L~fsp~~~~~LaSgS 502 (606)
+.+++|+| ||+.|++++.| .+|++||..+ +.... +. .+...+..++|+| ++.+|+.++
T Consensus 132 ~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 132 WADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE---LSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp EEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE---SSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred ccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE---EEecCCCcccCceECC-CCCEEEEEE
Confidence 67899999 99999999887 5899999987 55432 23 4456788899999 678888777
Q ss_pred CC--------CeEEEEeCCC-CCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeE
Q 035500 503 DS--------GCVRLFDLNH-IPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSK--NVALYDINTEKPLQ 570 (606)
Q Consensus 503 ~D--------gtIklWDl~~-~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg--~I~IWDlrt~k~v~ 570 (606)
.+ ..|.+||+.. +.. ........+ ...+..+.|+|+|+++++++.++ .|..||+.+++...
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~-------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRF-------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCE-------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred CCCCCCCCCCcEEEEEEECCCCcc-------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence 55 3799999983 210 022223333 46699999999999888888888 66667776676544
Q ss_pred EEcCCCCCC--------eEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 571 LFTDMHREP--------INVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 571 ~l~~gH~~~--------I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
... ++... +..++|+|++. ++++++. +.++.
T Consensus 280 l~~-~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l 318 (662)
T 3azo_A 280 LCR-REEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVL 318 (662)
T ss_dssp SSC-CSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEE
T ss_pred ccc-ccccccCccccccCceEeEeCCCE-EEEEEEc-CccEE
Confidence 333 33332 56788999887 5677766 65543
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.80 E-value=3.5e-07 Score=93.02 Aligned_cols=148 Identities=9% Similarity=0.004 Sum_probs=106.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----CeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS----GCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D----gtIklWDl~~~ 515 (606)
+.+++|+| ++++++++..++.|.+||..+++...... .+...+.+++|+| ++.+++++..+ +.|.+||....
T Consensus 47 ~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 47 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred ccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 67789999 88888889999999999999887655432 4567899999998 45777776666 68999998763
Q ss_pred CCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 516 PPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
.. ...+. ....+.+++++|++.++++... .+.|..||..+++...... +...++.++|+
T Consensus 123 ~~----------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~ 190 (333)
T 2dg1_A 123 NL----------QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALS 190 (333)
T ss_dssp SC----------EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEEC
T ss_pred EE----------EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEEC
Confidence 21 11111 2345899999999998887764 3556666666555433322 34568899999
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
|++..++++.+.++.|.
T Consensus 191 ~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLH 207 (333)
T ss_dssp TTSSEEEEEEGGGTEEE
T ss_pred CCCCEEEEEeCCCCeEE
Confidence 99987777777666554
No 173
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.80 E-value=1.6e-09 Score=110.96 Aligned_cols=39 Identities=3% Similarity=-0.164 Sum_probs=24.8
Q ss_pred hhccCCCCcccchhhHHHHHhhCCCceeccCCCCCcchH
Q 035500 309 YISHHPSPICFEKHYREYMIASLPQLEVLDNLPIGRLDR 347 (606)
Q Consensus 309 ~l~~~~npi~~~~~YReyvI~~Lp~LkvLD~~~i~~~eR 347 (606)
++.+.+|++...+.+....+..++.++.+|+..+.....
T Consensus 204 ~L~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~~~~~ 242 (291)
T 1h6t_A 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242 (291)
T ss_dssp EEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCCEEEE
T ss_pred EEECcCCcccCCccccccccEEcceEECCCCCCcCCCee
Confidence 566666676666555544455566777788777765443
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.78 E-value=4.3e-08 Score=112.46 Aligned_cols=150 Identities=7% Similarity=0.075 Sum_probs=101.9
Q ss_pred eEEEEcCCCCCEEEEEeCC---------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 035500 441 RQFEYNPSNPSLMAFGTLD---------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFD 511 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D---------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWD 511 (606)
..++||| |+++|++++.+ +.+.+||+.+++... +..|.+.+...+|+| ++..|+.++ |+.|.+||
T Consensus 65 ~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEECS-STTCEEEEE-TTEEEEES
T ss_pred cceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEECC-CCCEEEEEE-CCeEEEEE
Confidence 3478999 99999999987 566799999988653 447778899999999 567777774 78999999
Q ss_pred CCCCCCCcccccCCcceEEeecC----------CCeEEEEEccCCCEEEEEeCCC-------------------------
Q 035500 512 LNHIPPKVADARGNSSVATYYDF----------EQLTSVHVNSTDDQFLASGYSK------------------------- 556 (606)
Q Consensus 512 l~~~~~~~~~l~~~~~i~t~~~~----------~~V~sV~~sp~g~~LaSgs~Dg------------------------- 556 (606)
..++....-+..+. ....+.++ ....++.|+|+|+.||.++.|.
T Consensus 139 ~~~~~~~~lt~~g~-~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 139 EPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp STTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred CCCCceEEEcCCCC-ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 98743210000000 00011110 1124589999999998875332
Q ss_pred -----------cEEEEECCC---Cc--eeEEEcC-----CCCCCeEEEEEeCCCCeEEEEEe
Q 035500 557 -----------NVALYDINT---EK--PLQLFTD-----MHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 557 -----------~I~IWDlrt---~k--~v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+|++||+.+ ++ ....+.. +|...+..++|+|+|+.++....
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 488899998 73 2333432 37788999999999985444433
No 175
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=1.1e-08 Score=93.29 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=56.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+....+......=..-+.|+|++|.|..+..++.+++|.+|+|. .|.|+..-+..|..+|+|+.|.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELS-DNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECC-SSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECC-CCcccchHHHHhhhCCCCCEEEC
Confidence 55777777776554222223323333456666666666666666666666666666 66666633344555666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.+|++..+. ....+..+|+|++|
T Consensus 96 s~N~i~~~~-~~~~~~~l~~L~~L 118 (149)
T 2je0_A 96 SGNKIKDLS-TIEPLKKLENLKSL 118 (149)
T ss_dssp TTSCCCSHH-HHGGGGGCTTCCEE
T ss_pred CCCcCCChH-HHHHHhhCCCCCEE
Confidence 666665541 12334444444433
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.74 E-value=7.1e-08 Score=108.06 Aligned_cols=150 Identities=10% Similarity=0.081 Sum_probs=102.3
Q ss_pred EEEc--CCCCCE-EEEEeC-CCcEEEEECC--C-CceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEECC--------
Q 035500 443 FEYN--PSNPSL-MAFGTL-DGEVIVINHE--N-GNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGSDS-------- 504 (606)
Q Consensus 443 lafs--P~dg~~-LaSGs~-DGtVrIWDi~--t-g~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS~D-------- 504 (606)
+.|+ | |++. |+.++. ++.|.+|+.. . +... .+.... |...+.+++|+| +++.|++++.|
T Consensus 82 ~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 82 WAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp EEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTC
T ss_pred ceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCC
Confidence 4465 8 8887 776654 5667777765 2 4432 222111 667789999999 66888888877
Q ss_pred --CeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCC--------CcEEEEECC-CC---ce
Q 035500 505 --GCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYS--------KNVALYDIN-TE---KP 568 (606)
Q Consensus 505 --gtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~D--------g~I~IWDlr-t~---k~ 568 (606)
.+|.+||+.+..... ......+ .+...+.+++|+|+|++++.++.+ ..|.+||+. ++ +.
T Consensus 159 ~~~~i~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAAD-----RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEEEEETTSTTTTC-----GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred ceeEEEEEECCCCcccc-----CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 589999988621000 0112222 234557889999999999887755 379999999 56 44
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
..... +|...+..+.|+|+|+ ++++++.|+..
T Consensus 234 ~~l~~-~~~~~~~~~~~spdg~-l~~~~~~~~~~ 265 (662)
T 3azo_A 234 RTLLG-GPEEAIAQAEWAPDGS-LIVATDRTGWW 265 (662)
T ss_dssp EEEEE-ETTBCEEEEEECTTSC-EEEEECTTSSC
T ss_pred EEeCC-CCCceEcceEECCCCe-EEEEECCCCCe
Confidence 44444 5678999999999999 78888888743
No 177
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=5.2e-09 Score=97.44 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=56.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+....+......=..-++|+|++|.|..+..++.+++|++|+|. .|.|+......|..+|+|+.|.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEec
Confidence 55777777776554212222222223345566666666666666666666666666 55666644445555666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhh
Q 035500 180 CETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.+|++..+ ....++.++++|+.|
T Consensus 103 s~N~l~~~-~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 103 SGNKLKDI-STLEPLKKLECLKSL 125 (168)
T ss_dssp BSSSCCSS-GGGGGGSSCSCCCEE
T ss_pred cCCccCcc-hhHHHHhcCCCCCEE
Confidence 66666554 112344444444433
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.74 E-value=1.6e-07 Score=97.23 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=101.2
Q ss_pred EEEcCCCCCEEEEEeC-CC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 443 FEYNPSNPSLMAFGTL-DG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 443 lafsP~dg~~LaSGs~-DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.+|+| ||++||.++. +| .|.+||..+++...... +|...+.++.|+| ++..|+.++.++.|.+||+.++.
T Consensus 41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~--~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~--- 113 (388)
T 3pe7_A 41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE--GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLE--- 113 (388)
T ss_dssp CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCC--SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCC---
T ss_pred ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeee--CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCc---
Confidence 57999 9999999887 67 48888999888765433 5555566778999 67889999999999999999842
Q ss_pred ccccCCcceEEeecCCC-eEEEE--EccCCCEEEEE----------------------eCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYDFEQ-LTSVH--VNSTDDQFLAS----------------------GYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~-V~sV~--~sp~g~~LaSg----------------------s~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
....+..+.. +.... ++|++..++.. +.+..|.+||+.+++......
T Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~- 185 (388)
T 3pe7_A 114 -------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ- 185 (388)
T ss_dssp -------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-
T ss_pred -------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-
Confidence 2333333333 33333 48888887743 244789999999987655544
Q ss_pred CCCCCeEEEEEeC-CCCeEEEEEe
Q 035500 575 MHREPINVAKFSH-HSPLCLLLLH 597 (606)
Q Consensus 575 gH~~~I~sV~fsP-~g~~LLaTgS 597 (606)
+...+..++|+| +|..++.+..
T Consensus 186 -~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 186 -ENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp -ESSCEEEEEEETTEEEEEEEEEC
T ss_pred -CCccccccEECCCCCCEEEEEEe
Confidence 567899999999 9887554443
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.72 E-value=8.1e-07 Score=88.42 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=110.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----cCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----IGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~ 513 (606)
.+.+++++| +++++++.+.++.|++||.. ++....+.. .+|...+.++++.+.++.++++... ++.|.+||..
T Consensus 31 ~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 31 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 388899999 88899988999999999987 555555432 1345678999996435455555533 8999999943
Q ss_pred CCCCCcccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCC
Q 035500 514 HIPPKVADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSP 590 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~ 590 (606)
. ..+..+.. ...+.++++.|+++++++.+.++.|.+||.. ++.+..+.. ++...++.++++|++.
T Consensus 109 g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 G-----------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp S-----------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred C-----------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence 3 23344432 2458999999999988888888999999964 556555542 3456789999999987
Q ss_pred eEEEEEeCCCeEEE
Q 035500 591 LCLLLLHLTTMSRC 604 (606)
Q Consensus 591 ~LLaTgS~DgtIRc 604 (606)
++++.+.++.|+.
T Consensus 177 -l~v~~~~~~~i~~ 189 (286)
T 1q7f_A 177 -IFISDNRAHCVKV 189 (286)
T ss_dssp -EEEEEGGGTEEEE
T ss_pred -EEEEECCCCEEEE
Confidence 7788777776654
No 180
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.71 E-value=5.8e-09 Score=107.49 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=38.6
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
=+.|+|+.|++..+..++.+++|++|+|. .|.|+.++. |..||+|+.|.|.+|++..+ .++.++++|++|.+.
T Consensus 87 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 87 ITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECC
T ss_pred CCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEECCCCccCcC----ccccCCCCccEEEcc
Confidence 34455555555555555555555555555 455555543 55555555555555555444 335555555555543
No 181
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.69 E-value=2.1e-08 Score=98.86 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=31.4
Q ss_pred hhccCCCCccc----chhhHHHHHhhCCCceeccCCCCCcchHH
Q 035500 309 YISHHPSPICF----EKHYREYMIASLPQLEVLDNLPIGRLDRE 348 (606)
Q Consensus 309 ~l~~~~npi~~----~~~YReyvI~~Lp~LkvLD~~~i~~~eRe 348 (606)
++.+.+||+.+ ..+++.++....+.+..+|+.++.+.++.
T Consensus 163 ~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~ 206 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSA 206 (229)
T ss_dssp EEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCS
T ss_pred EEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcC
Confidence 77788888873 46689999999999999999887655443
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.64 E-value=4.4e-07 Score=103.42 Aligned_cols=146 Identities=6% Similarity=0.005 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCC-----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG-----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG-----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| ||++||.++.++ +|++||+.+++...... .+ ..+.+++|+| ++..|+.++.|+.
T Consensus 127 ~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cC-cccceEEEEe-CCCEEEEEEECCccccccccc
Confidence 67889999 999999877654 89999999988765321 21 2367899999 5678888888776
Q ss_pred --------EEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC-----CCcEEEEECCC-----
Q 035500 507 --------VRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY-----SKNVALYDINT----- 565 (606)
Q Consensus 507 --------IklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~-----Dg~I~IWDlrt----- 565 (606)
|++|++.+... .....+.. ...+.++.|+|+|++++.++. +..|.+||+.+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 99999977421 11233332 234789999999998877664 57899999987
Q ss_pred -Cc-eeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 566 -EK-PLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 566 -~k-~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+. ....+. .|...+.. .|+|+|..+++.+..++
T Consensus 274 ~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 274 TGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp CSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred CCccceEEee-CCCCcEEE-EEeccCCEEEEEECCCC
Confidence 53 355565 46666655 48899998777766543
No 183
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.64 E-value=8.5e-07 Score=91.66 Aligned_cols=142 Identities=10% Similarity=-0.031 Sum_probs=98.6
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEE--eeCCCCEEEEE------------------
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCW--LKKYPSKLVAG------------------ 501 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~f--sp~~~~~LaSg------------------ 501 (606)
..+|+| +++.|+.++.++.|++||+.+++...... .+...+....| +| ++..++..
T Consensus 85 ~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 85 GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQ--VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeee--chhhcccccceeECC-CCCeeccccccCcccccccccchhhh
Confidence 457999 99999999999999999999988766554 44444544444 55 45666532
Q ss_pred ----ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEECCCCceeE
Q 035500 502 ----SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYS------KNVALYDINTEKPLQ 570 (606)
Q Consensus 502 ----S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~D------g~I~IWDlrt~k~v~ 570 (606)
+.++.|.+||+.++ .......+...+..++|+| +|+.++.++.+ ..|.+||...++. .
T Consensus 161 ~~~~~~~~~l~~~d~~~g----------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~ 229 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTG----------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-R 229 (388)
T ss_dssp HGGGCCCEEEEEEETTTC----------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-E
T ss_pred hhccCCcceEEEEECCCC----------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-E
Confidence 24578999998874 2233334556689999999 99888777653 3788888876554 3
Q ss_pred EEcCCCC-CCeEEEEEeCCCCeEEEEEeC
Q 035500 571 LFTDMHR-EPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 571 ~l~~gH~-~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+...+. ..+...+|+|+|+.++.++..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 3432222 357889999999986554443
No 184
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.60 E-value=7.3e-08 Score=99.17 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=75.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +..+. .=-.-+.|+|+.|+|..+..++.+++|++|+|. .|.|+.++ -|..+|+|+.|.|
T Consensus 41 ~~L~~L~l~~~~i~~--l~~~~-~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~-~n~l~~~~--~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--IEGVQ-YLNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNVS--AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC--CTTGG-GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC-SCCCSCCG--GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC--chhhh-ccCCCCEEEccCCcCCCChhHccCCCCCEEEcc-CCcCCCch--hhcCCCCCCEEEC
Confidence 378888888864432 32222 123457899999998888888888899999999 77788885 3888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++.++++|++|.+..|
T Consensus 115 ~~n~l~~~----~~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 115 TSTQITDV----TPLAGLSNLQVLYLDLN 139 (308)
T ss_dssp TTSCCCCC----GGGTTCTTCCEEECCSS
T ss_pred CCCCCCCc----hhhcCCCCCCEEECCCC
Confidence 99988776 56888888888886553
No 185
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.59 E-value=1.6e-08 Score=114.44 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=62.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..-. .+ ..=..=+.|+|+.|.|..+..++.+++|++|+|. .|.|+.++. |..||+|+.|.|
T Consensus 65 ~~L~~L~Ls~N~l~~~~--~l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIK--PL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCG--GG-GGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCh--hh-ccCCCCCEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCcc--ccCCCccCEEEC
Confidence 46777777766543211 11 1112235577777777777777777777777777 666777643 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ ..+.+|++|++|.+..|
T Consensus 139 s~N~l~~l----~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 139 GNNKITDI----TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSSCCCCC----GGGGSCTTCSEEECCSS
T ss_pred CCCccCCc----hhhcccCCCCEEECcCC
Confidence 77777665 56677777777765443
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.59 E-value=1.8e-06 Score=86.69 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+.+++|+| +++ +++++..++.|..||..++ ...+. .+...+.+++++| ++.++++.+.++.|.+||..++..
T Consensus 30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~- 102 (296)
T 3e5z_A 30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW- 102 (296)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE-
T ss_pred ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE-
Confidence 56788999 777 8888999999999999877 44443 5667799999998 567777776778999999866321
Q ss_pred cccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEECCCCceeEEEcCCCCC
Q 035500 519 VADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLAS----G-------------YSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSg----s-------------~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
..+. ... ....+.++++.|+|+++++. + ..+.|..||.. ++. ..+. .+..
T Consensus 103 -------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~ 172 (296)
T 3e5z_A 103 -------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRV 172 (296)
T ss_dssp -------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCS
T ss_pred -------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCC
Confidence 0111 111 12346789999999988873 2 12455566655 443 3344 3667
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+.++|+|++..+ ++.+.++.|..
T Consensus 173 ~~~gi~~s~dg~~l-v~~~~~~~i~~ 197 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSDTGDNATHR 197 (296)
T ss_dssp SEEEEEECTTSCEE-EEETTTTEEEE
T ss_pred CCccEEECCCCCEE-EEeCCCCeEEE
Confidence 78999999999976 88887776653
No 187
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.58 E-value=7.6e-08 Score=98.36 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=59.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+. .+..+ +.=..-+.|+|++|+|..+..++.+++|++|.|+ .|.|+.++. |..||+|+.|.+
T Consensus 46 ~~L~~L~l~~~~i~--~~~~~-~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK--SVQGI-QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC--CCTTG-GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc--cChhH-hcCCCCCEEEccCCccCCCcccccCCCCCEEECC-CCcCCCChh--hccCCCCCEEEC
Confidence 34667777665432 11111 1112345677777777766666667777777777 666776654 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+ .++..+++|++|.+..
T Consensus 120 ~~n~i~~~----~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 120 EHNGISDI----NGLVHLPQLESLYLGN 143 (291)
T ss_dssp TTSCCCCC----GGGGGCTTCCEEECCS
T ss_pred CCCcCCCC----hhhcCCCCCCEEEccC
Confidence 77776665 5566666666666444
No 188
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.57 E-value=1.1e-07 Score=98.34 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=46.5
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
=+.|+|++|+|..+..++.+++|++|+|. .|.|+.++ .|..||+|+.|.+.+|++..+ .++.++++|++|.+.
T Consensus 68 L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 68 LEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDIS--ALQNLTNLRELYLNEDNISDI----SPLANLTKMYSLNLG 140 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCG--GGTTCTTCSEEECTTSCCCCC----GGGTTCTTCCEEECT
T ss_pred ccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCch--HHcCCCcCCEEECcCCcccCc----hhhccCCceeEEECC
Confidence 35566666666666666666666666666 55666664 266666666666666666655 346666666666655
Q ss_pred ee
Q 035500 207 MC 208 (606)
Q Consensus 207 ~~ 208 (606)
.|
T Consensus 141 ~n 142 (347)
T 4fmz_A 141 AN 142 (347)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 189
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=9e-09 Score=103.82 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=109.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+. .+..+.. =..-+.|+|++|+|..+..++.+++|++|+|+ .|.|+.++.-.+ ++|+.|.|
T Consensus 41 ~~L~~L~l~~n~i~--~l~~l~~-l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~-~N~l~~l~~~~~---~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLAGMQF-FTNLKELHLSHNQISDLSPLKDLTKLEELSVN-RNRLKNLNGIPS---ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC--CCTTGGG-CTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCSCCTTCCC---SSCCEEEC
T ss_pred CcCcEEECcCCCcc--cchHHhh-CCCCCEEECCCCccCCChhhccCCCCCEEECC-CCccCCcCcccc---CcccEEEc
Confidence 57888888886443 2322221 13457788888888888878888888888888 778888865333 88888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+ .++.++++|++|.+..+- +. .++
T Consensus 114 ~~N~l~~~----~~l~~l~~L~~L~Ls~N~---------------------------------------i~------~~~ 144 (263)
T 1xeu_A 114 DNNELRDT----DSLIHLKNLEILSIRNNK---------------------------------------LK------SIV 144 (263)
T ss_dssp CSSCCSBS----GGGTTCTTCCEEECTTSC---------------------------------------CC------BCG
T ss_pred cCCccCCC----hhhcCcccccEEECCCCc---------------------------------------CC------CCh
Confidence 88888776 678888888888754432 00 112
Q ss_pred ccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccccccchhhhhhhccCCCCcccchhhHHHHHhhCCCceecc
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDLMDANVKLKKYISHHPSPICFEKHYREYMIASLPQLEVLD 338 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD 338 (606)
.+.-+..|..|++.+|++-.+ +.+.. +++. ++.+.+|++...+.+....+..++.++.+|
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~------------------~L~l~~N~~~~~~~~~~~~l~~~~~l~~l~ 205 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVN------------------WIDLTGQKCVNEPVKYQPELYITNTVKDPD 205 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCC------------------EEEEEEEEEECCCEECCSEEEEECCCBCTT
T ss_pred HHccCCCCCEEECCCCcCcch-HHhccCCCCC------------------EEeCCCCcccCCccccccceEECCeeecCC
Confidence 344456788888888877666 33332 2222 444555555544433222223356788888
Q ss_pred CCCCCcchH
Q 035500 339 NLPIGRLDR 347 (606)
Q Consensus 339 ~~~i~~~eR 347 (606)
+..+...++
T Consensus 206 ~~~i~~~~i 214 (263)
T 1xeu_A 206 GRWISPYYI 214 (263)
T ss_dssp SCBCCCSEE
T ss_pred CCCcCCCEe
Confidence 877765443
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.57 E-value=1.2e-06 Score=85.82 Aligned_cols=150 Identities=8% Similarity=0.038 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++...++.|.+|+..+...... ...+...+.++++++ ++..+++...++.|.+||......
T Consensus 110 p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-- 183 (270)
T 1rwi_B 110 PEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ-- 183 (270)
T ss_dssp EEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred CcceEECC-CCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCce--
Confidence 77899999 888888888889999998665443321 113334678899998 556777777788999999876321
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
......+...+.++++.++|.++++...++.|..||........ ....+...+..++++|+|. ++++.+.+
T Consensus 184 -------~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~-l~v~~~~~ 254 (270)
T 1rwi_B 184 -------VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRT-VYVADRGN 254 (270)
T ss_dssp -------EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCC-EEEEEGGG
T ss_pred -------EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCC-EEEEECCC
Confidence 00111122558899999999888888888999999997654432 3323446789999999986 88899989
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|+.
T Consensus 255 ~~v~~ 259 (270)
T 1rwi_B 255 DRVVK 259 (270)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 88875
No 191
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.57 E-value=7.6e-08 Score=92.24 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=73.8
Q ss_pred cceEEEccCccccc-hHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRN-DNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+|+.++|+++.+.. +.+..+ ..-+.|+|++|.+..+..++.+++|++|.|. .|.|+......|..||+|+.|.|
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l----~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGC----TTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCccChHHHhcC----CCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEe
Confidence 57788887765542 223332 2456788888888888888888888888888 78888755566888888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++... ...++.++++|++|.+..|
T Consensus 120 s~n~i~~~--~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 120 SHSAHDDS--ILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CSSBCBGG--GHHHHTTCSSCCEEECCSC
T ss_pred cCCccCcH--hHHHHhhCCCCCEEEccCC
Confidence 88888751 2367788888888886664
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.57 E-value=8.4e-07 Score=90.40 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCCEEEEE---------eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---Ce-
Q 035500 440 PRQFEYNPSNPSLMAFG---------TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GC- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSG---------s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gt- 506 (606)
+...++ +|+.+|.. +.++.|.+||..+++.... ..+..++|+| ++..|+.++.+ +.
T Consensus 17 ~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~Sp-Dg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 17 LSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISP-DGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECT-TSSEEEEEEEETTTTEE
T ss_pred cccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECC-CCCEEEEEEeccCCCcc
Confidence 334445 56666553 2367899999998775432 3588999999 56777777654 34
Q ss_pred -EEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC---------------------------CcE
Q 035500 507 -VRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS---------------------------KNV 558 (606)
Q Consensus 507 -IklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D---------------------------g~I 558 (606)
|.+||+..+ .......+.. +..++|+|+|+.++.++.+ ..|
T Consensus 86 ~l~~~~~~~g----------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 86 EIWVADLETL----------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEEEETTTT----------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred eEEEEECCCC----------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 677777663 2233333334 9999999999988877632 579
Q ss_pred EEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 559 ALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 559 ~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.+||+.+++.+..+. . . .+..+.|+|+| ++++++.+
T Consensus 155 ~~~d~~~~~~~~~l~-~-~-~~~~~~~spdg--~~~~~~~~ 190 (347)
T 2gop_A 155 WIFDTESEEVIEEFE-K-P-RFSSGIWHRDK--IVVNVPHR 190 (347)
T ss_dssp EEEETTTTEEEEEEE-E-E-TTCEEEEETTE--EEEEEECC
T ss_pred EEEECCCCeEEeeec-C-C-CcccccCCCCe--EEEEEecc
Confidence 999999888755565 2 3 78899999999 56666544
No 193
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.56 E-value=1.5e-06 Score=91.27 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=57.9
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCeEEE
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTE--KPLQLFTDMHREPINVA 583 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~gH~~~I~sV 583 (606)
+|.+||..+ .+.+.++..+. ..+++|+|+|+++++++. ++|.+||..++ +.+..+. .+....+.+
T Consensus 287 ~v~viD~~t----------~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~ 353 (361)
T 2oiz_A 287 EIWVMDTKT----------KQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQV 353 (361)
T ss_dssp EEEEEETTT----------TEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEE
T ss_pred eEEEEECCC----------CcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEE
Confidence 555566555 34555666556 899999999999998887 99999999999 8888875 467788899
Q ss_pred EEeCCCC
Q 035500 584 KFSHHSP 590 (606)
Q Consensus 584 ~fsP~g~ 590 (606)
+++|+|.
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999986
No 194
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.54 E-value=1.9e-07 Score=96.56 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=119.3
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
-.+|+.++|+++....+. .. ...=.+=+.|+|++|.+..+..++.+++|++|.|. .|.++.++. |..+|+|+.|.
T Consensus 131 l~~L~~L~l~~n~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDL-SP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN-YNQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT-TSCCCCCGG--GGGCTTCCEEE
T ss_pred CCceeEEECCCCCCcccc-cc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc-CCccccccc--ccCCCccceee
Confidence 468999999987433322 11 12222345688888888888888888899999998 778888866 88888888888
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh--
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK-- 256 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 256 (606)
+.+|++..+ ..+..+++|++|.+.+|. -++..+. ..+.+.-+++++.
T Consensus 206 l~~n~l~~~----~~~~~~~~L~~L~l~~n~---l~~~~~~------------------------~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 206 AYVNQITDI----TPVANMTRLNSLKIGNNK---ITDLSPL------------------------ANLSQLTWLEIGTNQ 254 (347)
T ss_dssp CCSSCCCCC----GGGGGCTTCCEEECCSSC---CCCCGGG------------------------TTCTTCCEEECCSSC
T ss_pred cccCCCCCC----chhhcCCcCCEEEccCCc---cCCCcch------------------------hcCCCCCEEECCCCc
Confidence 888888766 457888888888876642 1111110 0111222233332
Q ss_pred --hhcccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-ccc-----c-hhhhhhhccCCCCcccchhhHHH
Q 035500 257 --YLRTMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDA-----N-VKLKKYISHHPSPICFEKHYREY 326 (606)
Q Consensus 257 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~-----~-v~L~~~l~~~~npi~~~~~YRey 326 (606)
.++.+..+..|+.|++.+|++-.+ +.+.. +++..+.+.++.+ ... . -.|+ ++.+.+|++.....
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~---- 328 (347)
T 4fmz_A 255 ISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRP---- 328 (347)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS-EEECCSSSCCCCGG----
T ss_pred cCCChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC-EEEccCCccccccC----
Confidence 234455556777777777766655 33333 4555555555544 111 1 1445 56666666665433
Q ss_pred HHhhCCCceecc
Q 035500 327 MIASLPQLEVLD 338 (606)
Q Consensus 327 vI~~Lp~LkvLD 338 (606)
+..++.|+.+|
T Consensus 329 -~~~l~~L~~L~ 339 (347)
T 4fmz_A 329 -LASLSKMDSAD 339 (347)
T ss_dssp -GGGCTTCSEES
T ss_pred -hhhhhccceee
Confidence 44566666555
No 195
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.54 E-value=8.3e-08 Score=103.35 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=75.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..+++++|+++.+..-.... +..=-.=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+|+|+.|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF-DNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC-SSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC-CCcCCeeCHhHhhccccCcee
Confidence 56788888887654321111 112234577888888888775 56778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+. ..++.++++|++|.+..
T Consensus 142 ~L~~N~i~~~~--~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 142 WLRNNPIESIP--SYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp ECCSCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred eCCCCcccccC--HHHhhhCcccCEeCCCC
Confidence 88888887662 23577788888887665
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.53 E-value=3e-06 Score=84.85 Aligned_cols=154 Identities=8% Similarity=0.064 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC---------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEe----eCCCCEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWL----KKYPSKLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs----p~~~~~LaS 500 (606)
+.+++++| ++++.++...+ +.|..||.. ++..... .+.....+++|+ |++...+++
T Consensus 119 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 119 CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEEE
T ss_pred CcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec---cCCCCcceEEEecccCCCCCEEEEE
Confidence 77899999 88888877665 567778766 5544322 233457899999 843234455
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeecC--CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDF--EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
.+.++.|.+||...... +........+..+ .....+++.++|+++++...++.|..||..+++.+..+. .+..
T Consensus 194 ~~~~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~ 268 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAK----IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFE 268 (314)
T ss_dssp ETTTTEEEEEEEEETTE----EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSS
T ss_pred ECCCCeEEEEECCCCCc----cccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCC
Confidence 56789999999762110 0000112222222 447889999999999988888999999998888777777 4668
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 579 PINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.+.+++|+|++..+++++..++.|.
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CceeEEECCCCCEEEEEeCCCCeEE
Confidence 8999999999987777777665543
No 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.52 E-value=1.5e-06 Score=88.47 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=89.6
Q ss_pred eeEEEEcCCCCCEEEEEeCC---C--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC----------
Q 035500 440 PRQFEYNPSNPSLMAFGTLD---G--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---------- 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D---G--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---------- 504 (606)
+.+++|+| +|+.||.++.+ + .|.+||+.+++...... +.. +..++|+| ++..|+.++.+
T Consensus 61 ~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 61 ATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp CEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---ESE-EEEEEECT-TSSEEEEEEECCCC-------
T ss_pred CCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEE
Confidence 56789999 99999988754 3 47888888877655433 223 99999999 56777776632
Q ss_pred -----------------CeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-------cEEE
Q 035500 505 -----------------GCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK-------NVAL 560 (606)
Q Consensus 505 -----------------gtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg-------~I~I 560 (606)
..|.+||+.++ ..+..+... .+..++|+|+| ++++++.++ ...+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESE----------EVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTT----------EEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred cccceeecCcccccCccceEEEEECCCC----------eEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccE
Confidence 57888998763 221222222 78899999999 888776542 3445
Q ss_pred EECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 561 YDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 561 WDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
|.+.+++. ..+. .+ ..+..+ +|+|.+++.++..
T Consensus 203 ~~~d~~~~-~~l~-~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 203 YIWEDGKE-EKMF-EK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEETTEE-EEEE-EE-ESEEEE--EECSSCEEEEECC
T ss_pred EEeCCCce-EEec-cC-cceeeE--CCCCCEEEEEEcc
Confidence 54445544 3343 24 455544 9999986555543
No 198
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.51 E-value=9.1e-08 Score=103.03 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=66.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.. .-+..=.+=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC-CCcccccCHHHhhhCcccCEe
Confidence 468888888765532111 11111123466888888777775 36677778888887 777777777777777777777
Q ss_pred Eccc-ccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCE-TRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~-~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+ +++..+ ...++.+|++|++|.+..|
T Consensus 166 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 166 DLGELKRLSYI--SEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ECCCCTTCCEE--CTTTTTTCSSCCEEECTTS
T ss_pred CCCCCCCccee--CcchhhcccccCeecCCCC
Confidence 7776 334333 1134666777777776553
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.49 E-value=9.3e-07 Score=100.56 Aligned_cols=140 Identities=8% Similarity=-0.032 Sum_probs=96.5
Q ss_pred eeEEEEcCCCCCEEE-----EEeCCCcEEEEECCCCceEEEEeccCCCCCE--EEEEEeeCCCCEEEEEECCCe------
Q 035500 440 PRQFEYNPSNPSLMA-----FGTLDGEVIVINHENGNVACYIPSIGGTNSV--LGLCWLKKYPSKLVAGSDSGC------ 506 (606)
Q Consensus 440 V~slafsP~dg~~La-----SGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V--~~L~fsp~~~~~LaSgS~Dgt------ 506 (606)
+..++||| ||++|| .|+.+.+|++||+.+++.... .+...+ .+++|+| ++..|+.++.|..
T Consensus 123 ~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 123 LGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----DVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----CCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred EEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCC----cccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 77889999 999999 445567899999999886511 121222 6789999 5678888888876
Q ss_pred -------EEEEeCCCCCCCcccccCCcceEEeec--C-CCeEEEEEccCCCEEEEEeCCC----cEEEEECCCCceeEEE
Q 035500 507 -------VRLFDLNHIPPKVADARGNSSVATYYD--F-EQLTSVHVNSTDDQFLASGYSK----NVALYDINTEKPLQLF 572 (606)
Q Consensus 507 -------IklWDl~~~~~~~~~l~~~~~i~t~~~--~-~~V~sV~~sp~g~~LaSgs~Dg----~I~IWDlrt~k~v~~l 572 (606)
|++|++.++.. .....+.. + ..+.++.|+|+|++++.++.++ .|.+||..+++.. .+
T Consensus 197 ~~~~~~~v~~~~l~t~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l 267 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPS--------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LL 267 (695)
T ss_dssp GGGGGCEEEEEETTSCGG--------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EE
T ss_pred cCCCCCEEEEEECCCCch--------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Ee
Confidence 99999987421 12233332 2 4588999999999887776655 6777776555543 34
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
. .+...+....| |++. +++++.
T Consensus 268 ~-~~~~~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 268 V-KGVGAKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp E-ECSSCCEEEEE-ETTE-EEEEEC
T ss_pred e-cCCCceEEEEe-cCCc-EEEEEC
Confidence 4 35556666666 5666 666665
No 200
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.49 E-value=1.3e-07 Score=95.28 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=58.3
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
+|+.+++.++.+. .+..+. .=..-++|+|++|.+..+..++.+++|++|+|. +|.|+.+....|..+|+|+.|.|.
T Consensus 42 ~L~~L~l~~~~i~--~~~~l~-~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIK--SVQGIQ-YLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCC--CCTTGG-GCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcc--cccccc-cCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECC
Confidence 4566666664332 122211 112335566666666666666666667777776 566666666666666777777776
Q ss_pred cccccchhhhhHHhhcCCchhhhhhcee
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+|++..+-. ..+.++++|++|.+..|
T Consensus 118 ~n~l~~~~~--~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 118 ENQLQSLPD--GVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCcCCccCH--HHhccCCCCCEEECCCC
Confidence 666654411 12556666666665543
No 201
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.49 E-value=1.3e-07 Score=102.06 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=73.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..||.++|+++.+..-.- +-+..=..=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+|+|+.|
T Consensus 75 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF-DNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC-CCcCCccChhhhcccCCCCEE
Confidence 577888888866543111 11111124567888888888774 56778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+. ..++.++++|++|.+..
T Consensus 153 ~L~~N~l~~~~--~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 153 WLRNNPIESIP--SYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp ECCSCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred ECCCCCcceeC--HhHHhcCCcccEEeCCC
Confidence 88888887652 23567788888887665
No 202
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.49 E-value=1.8e-07 Score=95.88 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=101.2
Q ss_pred CCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhh-ccceEEEccCccccchHHHhhc-cCCCceeEEEcc
Q 035500 56 ADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAID-QKLRVVDLSNITLRNDNLLDLC-QVGSSCHVLILR 133 (606)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (606)
.|...+.+++... .+..+++ ..+.+.+..+..+.+.++ .+|+.++|+++.+....-..++ ..-.+=+.|+|+
T Consensus 52 ~~~~~~~~~~~~~---~l~~l~l---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls 125 (310)
T 4glp_A 52 ADPRQYADTVKAL---RVRRLTV---GAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLR 125 (310)
T ss_dssp SCCSSSSGGGSSC---CCCEEEE---CSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE
T ss_pred CCHHHHHHHhhhc---ceeEEEE---eCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEee
Confidence 4444444444433 2333333 345667777777777665 4699999999887655444443 444456789999
Q ss_pred ccchhcc------ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhh
Q 035500 134 ATNIRKL------NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRF 205 (606)
Q Consensus 134 ~~~~~~l------~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~ 205 (606)
.|+|... ..+..+++|++|+|. .|.|+.+...-|..||+|+.|.|.+|++...- .....+.++|+|++|.+
T Consensus 126 ~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 126 NVSWATGRSWLAELQQWLKPGLKVLSIA-QAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp SCCCSSTTSSHHHHHTTBCSCCCEEEEE-CCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred cccccchhhhhHHHHhhhccCCCEEEee-CCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 9999862 122368899999999 89999998888999999999999999875320 11122368899999987
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..|
T Consensus 205 s~N 207 (310)
T 4glp_A 205 RNT 207 (310)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 203
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.48 E-value=2.8e-07 Score=99.95 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=76.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||++||+++.+..-. . ...=..=+.|+|++|++..+..++.+.+|++|.|. +|.|+.++. |..+|+|+.|.+
T Consensus 68 ~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF-NNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChhhcCCCCCCEEECC-CCCCCCChH--HcCCCCCCEEEC
Confidence 57899999987654321 1 11122446799999999888888899999999998 778998865 889999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+ .++.++++|++|.+.+
T Consensus 142 ~~n~l~~~----~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 142 SSNTISDI----SALSGLTSLQQLSFGN 165 (466)
T ss_dssp EEEEECCC----GGGTTCTTCSEEEEEE
T ss_pred CCCccCCC----hhhccCCcccEeecCC
Confidence 99988876 6788889999888754
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=1.1e-07 Score=96.76 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=61.1
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc----c-cccccccEEecccCCCcccccc--cccccC
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM----V-GRFMHLNTLSLDFCSSLASLHE--DCFSCM 171 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~l~tl~l~~~~~~~~~~~--~~~~~~ 171 (606)
|.--+.+||+. |..| .+|...|+. ++.|+..-+.. + ..|++|++|+|. +|.|+.+.. +.+..+
T Consensus 126 n~~~~~LdLs~--l~~d--p~L~~~~l~-----l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l 195 (267)
T 3rw6_A 126 DGSQQALDLKG--LRSD--PDLVAQNID-----VVLNRRSCMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKA 195 (267)
T ss_dssp ETTTTEEECTT--GGGC--HHHHHTTCC-----CCTTSHHHHHHHHHHHHHHCTTCCEEECT-TSCCCCCGGGTTHHHHS
T ss_pred chhccccCHHH--cCCC--cchhhcCcc-----ccCCHHHHHHHHHHHHHhhCCCCCEEECC-CCCCCCCccchhHHhhC
Confidence 44467788887 4444 355555543 44554333321 1 358899999999 999999874 667799
Q ss_pred ccccEEEcccccccchhhhhHHhhcCCc
Q 035500 172 PYLMCLSMCETRIVNLWTTTAAISKLPY 199 (606)
Q Consensus 172 p~l~~l~~~~~~~~~l~~~~~~l~~~~~ 199 (606)
|+|+.|.|.+|+|..+ ++|.+|..
T Consensus 196 ~~L~~L~Ls~N~i~~~----~~l~~l~~ 219 (267)
T 3rw6_A 196 PNLKILNLSGNELKSE----RELDKIKG 219 (267)
T ss_dssp TTCCEEECTTSCCCSG----GGGGGGTT
T ss_pred CCCCEEECCCCccCCc----hhhhhccc
Confidence 9999999999999977 55555553
No 205
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.46 E-value=3.4e-06 Score=82.64 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| +++++++.. ++.|.+||...+... .+.. .....+.++++++ ++..+++...++.|.+|+......
T Consensus 69 p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-- 141 (270)
T 1rwi_B 69 PQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-VLPF-DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-- 141 (270)
T ss_dssp CCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-ECCC-CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC--
T ss_pred cceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-eeec-CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee--
Confidence 67889999 788666665 899999998765443 2221 3335789999998 557777777889999997554211
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
......+...+.+++++|+++++++...++.|..||........... .+...+..++++|+| .++++...+
T Consensus 142 -------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g-~l~v~~~~~ 212 (270)
T 1rwi_B 142 -------TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAG-TVYVTEHNT 212 (270)
T ss_dssp -------EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTC-CEEEEETTT
T ss_pred -------EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCC-CEEEEECCC
Confidence 11111122457889999999988888788999999998765543322 344778999999998 577777767
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|..
T Consensus 213 ~~v~~ 217 (270)
T 1rwi_B 213 NQVVK 217 (270)
T ss_dssp SCEEE
T ss_pred CcEEE
Confidence 66543
No 206
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.46 E-value=2e-06 Score=88.64 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCEEEEEeCC------CcEEEEECCCCceEEEEeccCC-CCCEEEEEEeeCCCCEEEEEECC-----CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLD------GEVIVINHENGNVACYIPSIGG-TNSVLGLCWLKKYPSKLVAGSDS-----GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH-~~~V~~L~fsp~~~~~LaSgS~D-----gtI 507 (606)
+..+.|+|.+++.++..+.+ ..|.+||...+....... .. ...+..++|+| ++..|+.++.+ +.|
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEECC-CCCEEEEEecCCCCccceE
Confidence 66788999566767766544 468889987665433211 11 23578899999 45656555543 459
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEe----------------CCCcEEEEECCCCceeE
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASG----------------YSKNVALYDINTEKPLQ 570 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs----------------~Dg~I~IWDlrt~k~v~ 570 (606)
.+||+.++.. ..+..+ .... +.|+| +|+++++++ .++.|.+||+.+++...
T Consensus 267 ~~~d~~~g~~--------~~l~~~---~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (396)
T 3c5m_A 267 YKANPETLEN--------EEVMVM---PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK 334 (396)
T ss_dssp EEECTTTCCE--------EEEEEC---CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred EEEECCCCCe--------EEeeeC---CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence 9999987421 111111 1233 88999 999888765 34789999999887543
Q ss_pred EEcCCCCC-----------CeEEEEEeCCCCeEEEEEeCCCe
Q 035500 571 LFTDMHRE-----------PINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 571 ~l~~gH~~-----------~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
+. .|.. .+..++|+|+|.+++.++..++.
T Consensus 335 -l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~ 374 (396)
T 3c5m_A 335 -LC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV 374 (396)
T ss_dssp -EE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS
T ss_pred -cc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCC
Confidence 33 2333 25678999999987777666654
No 207
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.46 E-value=1.6e-07 Score=101.48 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=73.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.. +-+..=.+=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEE
Confidence 578999998876543211 111112345778888888887763 6778888888888 788888888888888888888
Q ss_pred Eccc-ccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCE-TRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~-~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+ +.+..+ ...++.++++|++|.+..|
T Consensus 177 ~l~~~~~l~~i--~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 177 DLGELKKLEYI--SEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCCCTTCCEE--CTTTTTTCTTCCEEECTTS
T ss_pred eCCCCCCcccc--ChhhccCCCCCCEEECCCC
Confidence 8887 444443 1235677888888876654
No 208
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.46 E-value=1.6e-07 Score=96.75 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=41.8
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHh-hcCCchhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAI-SKLPYLMELR 204 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l-~~~~~l~~l~ 204 (606)
.-+.|+|+.|+|..+.. +.|.+|++|.|. .|.|+.+...-|..+|+|+.|.+.+|++..+ ...++ ..+++|++|.
T Consensus 100 ~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 100 SIETLHAANNNISRVSC-SRGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--NFAELAASSDTLEHLN 175 (317)
T ss_dssp TCCEEECCSSCCSEEEE-CCCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEE--EGGGGGGGTTTCCEEE
T ss_pred CcCEEECCCCccCCcCc-cccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCCCcc--cHHHHhhccCcCCEEE
Confidence 33445555555544432 235566666666 5666666555566666666666666666543 11223 2455666665
Q ss_pred hce
Q 035500 205 FQM 207 (606)
Q Consensus 205 ~~~ 207 (606)
+..
T Consensus 176 L~~ 178 (317)
T 3o53_A 176 LQY 178 (317)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 209
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.45 E-value=1.1e-07 Score=100.40 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=92.5
Q ss_pred EeeccccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccc------hHHHh
Q 035500 48 VYLDQLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRN------DNLLD 119 (606)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~------~~~~~ 119 (606)
+.++++.+.++.++.+.+..... +..+|+. .|.+...-+-.+-.++ ..+|+.++|+++..+. +.++.
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~--L~~L~L~---~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDS--VKEIVLS---GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSC--CCEEECT---TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCC--ccEEECC---CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 34556777777777777766543 6666663 3556665554444332 4678888888754331 23332
Q ss_pred hc---cCCCceeEEEccccchhc-----c-ccccccccccEEecccCCCcccccccccccC-------------ccccEE
Q 035500 120 LC---QVGSSCHVLILRATNIRK-----L-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCM-------------PYLMCL 177 (606)
Q Consensus 120 ~~---~~~~~~~~~~~~~~~~~~-----l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~-------------p~l~~l 177 (606)
|+ ..-..=+.|+|++|.|.. + ..++.+++|++|+|. +|.|+.....-+..+ |+|+.|
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 22 222344678888888776 2 244667788888888 667764433223322 788888
Q ss_pred Ecccccccc--hhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVN--LWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~--l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++.+ +-.-..++.++++|++|.+..|
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 888887752 2111245667778887776554
No 210
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.45 E-value=1.3e-07 Score=106.93 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=134.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+.. +..+. .=..-+.|+|++|+|..+..++.+++|+.|.|. .|.|+.++ .|..||+|+.|.|
T Consensus 43 ~~L~~L~l~~n~i~~--l~~l~-~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS--VQGIQ-YLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC--CTTGG-GCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC-SSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--ChHHc-cCCCCCEEEeeCCCCCCChhhccCCCCCEEECc-CCCCCCCh--hhccCCCCCEEEe
Confidence 357888888754432 22221 123456799999999888888889999999999 78888886 4888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+ .++..|++|++|.+..|. -+ .++
T Consensus 117 s~N~l~~l----~~l~~l~~L~~L~Ls~N~---l~------------------------------------------~l~ 147 (605)
T 1m9s_A 117 EHNGISDI----NGLVHLPQLESLYLGNNK---IT------------------------------------------DIT 147 (605)
T ss_dssp TTSCCCCC----GGGGGCTTCSEEECCSSC---CC------------------------------------------CCG
T ss_pred cCCCCCCC----ccccCCCccCEEECCCCc---cC------------------------------------------Cch
Confidence 99988876 678888889888866542 00 113
Q ss_pred ccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-cccch----hhhhhhccCCCCcccchhhHHHHHhhCCC
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDANV----KLKKYISHHPSPICFEKHYREYMIASLPQ 333 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~v----~L~~~l~~~~npi~~~~~YReyvI~~Lp~ 333 (606)
.+.-+..|..|++.+|++-.+.. +.. +++..+-+..|.+ .+..+ .|+ .+.+..|++...+.++..-+..++.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~-~L~L~~N~l~~~p~~~~~~l~~~~~ 225 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLD-VLELFSQECLNKPINHQSNLVVPNT 225 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCS-EEECCSEEEECCCCCCCSSCEEECC
T ss_pred hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCCCCC-EEEccCCcCcCCcccccccEEeccc
Confidence 34556788999999998877766 555 6677777777766 44333 566 7888888888777666544455667
Q ss_pred ceeccCCCCCc
Q 035500 334 LEVLDNLPIGR 344 (606)
Q Consensus 334 LkvLD~~~i~~ 344 (606)
++.+|+..+..
T Consensus 226 l~~l~g~~~~~ 236 (605)
T 1m9s_A 226 VKNTDGSLVTP 236 (605)
T ss_dssp CBCSSSCBCCC
T ss_pred ccccCCCCcCc
Confidence 77777776654
No 211
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.44 E-value=4.7e-06 Score=84.56 Aligned_cols=151 Identities=10% Similarity=0.064 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCCEEEEEeC------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTL------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl 512 (606)
+..++++| +++++++... .+.|..||..+++..... .+...+.+++|+|+ +. ++++.+.++.|.+||.
T Consensus 137 ~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 137 IDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTD-EKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp EEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEE
T ss_pred ccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee---cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEe
Confidence 77899999 8888877654 356667776655544322 22345789999984 45 4456667899999998
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC------CCeEEEEEe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR------EPINVAKFS 586 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~------~~I~sV~fs 586 (606)
........... ......+..+..+..+++.++|+++++...++.|.+||. .++.+..+. .+. ..+.+++|+
T Consensus 212 ~~~g~~~~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFG-ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEE-EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCccccc-ceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE-cCCCccccccCcceEEEC
Confidence 64211000000 000111122235788999999999888888899999998 466666665 232 268999999
Q ss_pred CCCCeEEEEEeC
Q 035500 587 HHSPLCLLLLHL 598 (606)
Q Consensus 587 P~g~~LLaTgS~ 598 (606)
|++..+++++..
T Consensus 289 ~dg~~L~v~~~~ 300 (333)
T 2dg1_A 289 PGTNQLIICSND 300 (333)
T ss_dssp TTSCEEEEEEEC
T ss_pred CCCCEEEEEeCc
Confidence 998877766665
No 212
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.44 E-value=4.5e-07 Score=91.49 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=59.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|+.|.|..+. .++.+++|++|+|..|..++.+....|..+|+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 356666666655433110 11111123456777777666653 455666777777773333676666667777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 111 ~l~~n~l~~~~--~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 111 HLDRCGLQELG--PGLFRGLAALQYLYLQD 138 (285)
T ss_dssp ECTTSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEEC--HhHhhCCcCCCEEECCC
Confidence 77777666441 13355666666666544
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=8.3e-08 Score=107.66 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=70.9
Q ss_pred cchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhH
Q 035500 113 RNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTA 192 (606)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~ 192 (606)
+.+.+..+.... -++|+|++|.|..+..++.+.+|.+|+|+ .|.|+.|+. .|..||+|+.|.|.+|++..+ .
T Consensus 431 ~~n~i~~l~~~~--L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l----p 502 (567)
T 1dce_A 431 LENSVLKMEYAD--VRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPP-ALAALRCLEVLQASDNALENV----D 502 (567)
T ss_dssp HHHHHHHHHHTT--CSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCG-GGGGCTTCCEEECCSSCCCCC----G
T ss_pred hcccccccCccC--ceEEEecCCCCCCCcCccccccCcEeecC-cccccccch-hhhcCCCCCEEECCCCCCCCC----c
Confidence 333444443333 46799999999999889999999999999 889999975 689999999999999999876 5
Q ss_pred HhhcCCchhhhhhce
Q 035500 193 AISKLPYLMELRFQM 207 (606)
Q Consensus 193 ~l~~~~~l~~l~~~~ 207 (606)
.+.+|++|++|.+..
T Consensus 503 ~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 503 GVANLPRLQELLLCN 517 (567)
T ss_dssp GGTTCSSCCEEECCS
T ss_pred ccCCCCCCcEEECCC
Confidence 788899999887554
No 214
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.42 E-value=2.7e-06 Score=89.19 Aligned_cols=136 Identities=9% Similarity=0.036 Sum_probs=93.3
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeC
Q 035500 449 NPSLMAFGT------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDL 512 (606)
Q Consensus 449 dg~~LaSGs------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl 512 (606)
++.++++.. .|++|.+||..+++.+..+. .+..+ .++|+| +++++++++ .+++|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~--~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP--TAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE--CCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec--CCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 47899999999999887665 34433 899999 567777775 3678999998
Q ss_pred CCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCeEE
Q 035500 513 NHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQL-FTDMHREPINV 582 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~-l~~gH~~~I~s 582 (606)
.+. ..+.++.. ......++++|+|++++++.. +++|.+||+.+++.+.. ++. .....
T Consensus 89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~ 155 (361)
T 2oiz_A 89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWS 155 (361)
T ss_dssp TTC----------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEE
T ss_pred cCC----------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcce
Confidence 863 33444331 234678999999998888864 68999999999988877 652 12223
Q ss_pred EEEeCCCCeEEEEEeCCCeE
Q 035500 583 AKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~DgtI 602 (606)
+.+.|.+...+++.+.|+.+
T Consensus 156 v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp EEECTTSSSEEEEEETTSSE
T ss_pred eEEcCCCCeeEEEECCCCcE
Confidence 44555554445555555543
No 215
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=3e-07 Score=92.36 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=6.7
Q ss_pred hhccCCCCccc
Q 035500 309 YISHHPSPICF 319 (606)
Q Consensus 309 ~l~~~~npi~~ 319 (606)
++.+.+||..+
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 56666677653
No 216
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.41 E-value=5.1e-06 Score=84.10 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
.++++++++.|+.|.+||.++|+.+..+. .+. ..+.++.+.| ++++++ +.++.|..||. ++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G----------~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DG----------RE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS----------CE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC----------CE
Confidence 35799999999999999999999998877 333 4688899998 567777 45788999998 42 23
Q ss_pred eEEeecC--CCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcC-----CCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 528 VATYYDF--EQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTD-----MHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 528 i~t~~~~--~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
+-.+... ..+.++.+.|+|+++++.+. ++.+..+|. .++.+..+.. ++......+++.++|. ++++.+.+
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~ 145 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFAT 145 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTT
T ss_pred EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCC
Confidence 4445432 45889999999999999887 778888886 6777766652 1223455677888888 57788888
Q ss_pred CeEEE
Q 035500 600 TMSRC 604 (606)
Q Consensus 600 gtIRc 604 (606)
+.|.+
T Consensus 146 ~~v~~ 150 (276)
T 3no2_A 146 SEVRE 150 (276)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 88876
No 217
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.40 E-value=7.2e-07 Score=91.97 Aligned_cols=141 Identities=6% Similarity=-0.111 Sum_probs=92.0
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEE-------------------EEEeeCCCCEEEEE--
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLG-------------------LCWLKKYPSKLVAG-- 501 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~-------------------L~fsp~~~~~LaSg-- 501 (606)
+.|+| +++.|+.++.++.|++||..+++...... .+...... ..|+| ++..++.+
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~ 161 (396)
T 3c5m_A 86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEF 161 (396)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHH
T ss_pred ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeee
Confidence 56999 99999999999999999999887665443 23221111 23444 22333222
Q ss_pred ---ECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEECCCCceeEE
Q 035500 502 ---SDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYS------KNVALYDINTEKPLQL 571 (606)
Q Consensus 502 ---S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~D------g~I~IWDlrt~k~v~~ 571 (606)
..+..|.+||+.++ .......+...+..+.|+| ++..++..+.+ ..|.+||+..++.. .
T Consensus 162 ~~~~~~~~l~~~d~~~g----------~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETG----------ELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-K 230 (396)
T ss_dssp HHTCCCEEEEEEETTTC----------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-E
T ss_pred ccCCCcceEEEEECCCC----------cEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-E
Confidence 45668999998873 2233334556689999999 77766665543 46888998766543 3
Q ss_pred EcCCC-CCCeEEEEEeCCCCeEEEEEeC
Q 035500 572 FTDMH-REPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 572 l~~gH-~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
+.... ...+..++|+|+|.+++.++..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred eeccCCCccccceEECCCCCEEEEEecC
Confidence 33111 2358889999999986655443
No 218
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.40 E-value=5.1e-06 Score=83.25 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=101.7
Q ss_pred ceeEEEEcCCCCCEEEE----Ee-------------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAF----GT-------------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 439 rV~slafsP~dg~~LaS----Gs-------------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
.+..++++| +|+++++ |+ ..+.|..|+.. ++... + ..+.....+++|+| ++..+++.
T Consensus 116 ~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~--~~~~~~~~gi~~s~-dg~~lv~~ 189 (296)
T 3e5z_A 116 SPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-P--IRDRVKPNGLAFLP-SGNLLVSD 189 (296)
T ss_dssp CCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-E--ECCCSSEEEEEECT-TSCEEEEE
T ss_pred CCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-e--ecCCCCCccEEECC-CCCEEEEe
Confidence 367789999 8998887 33 13456666655 44432 2 25566789999999 55666888
Q ss_pred ECCCeEEEEeCCCCCCCcccccCC-cceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGN-SSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~-~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
+.++.|.+||+..... . .....+. +...+.++++.++|+++++. ++.|.+||.. ++.+..+. .+..
T Consensus 190 ~~~~~i~~~~~~~~g~-------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-~~~~- 257 (296)
T 3e5z_A 190 TGDNATHRYCLNARGE-------TEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-TPQT- 257 (296)
T ss_dssp TTTTEEEEEEECSSSC-------EEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-CSSC-
T ss_pred CCCCeEEEEEECCCCc-------CcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-CCCC-
Confidence 8899999999973111 0 0112222 22346789999999977776 7899999987 77777777 4656
Q ss_pred eEEEEE-eCCCCeEEEEEeCCCeEEE
Q 035500 580 INVAKF-SHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 580 I~sV~f-sP~g~~LLaTgS~DgtIRc 604 (606)
+++++| .|++..+++ ++.++..|.
T Consensus 258 ~~~~~f~~~d~~~L~v-~t~~~l~~~ 282 (296)
T 3e5z_A 258 TSNLCFGGPEGRTLYM-TVSTEFWSI 282 (296)
T ss_dssp CCEEEEESTTSCEEEE-EETTEEEEE
T ss_pred ceeEEEECCCCCEEEE-EcCCeEEEE
Confidence 999999 588887555 455777764
No 219
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.40 E-value=5.4e-06 Score=85.44 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC---CCCCEEEEEEeeCCCCEEEEEE-CCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG---GTNSVLGLCWLKKYPSKLVAGS-DSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g---H~~~V~~L~fsp~~~~~LaSgS-~DgtIklWDl~~~ 515 (606)
++.++++| ++.+.++...++.|.+||..+++....+.... +.....++++ . ++..+++.. .+++|.+||..+.
T Consensus 86 p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 86 PRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp EEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT
T ss_pred CcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC
Confidence 77889988 67555444489999999999998887666422 1113556777 2 434444443 4899999999873
Q ss_pred CCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC----------CcEEEEECCCCceeEEEcCCCCCCeEEEEE
Q 035500 516 PPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS----------KNVALYDINTEKPLQLFTDMHREPINVAKF 585 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D----------g~I~IWDlrt~k~v~~l~~gH~~~I~sV~f 585 (606)
..+.++........+.++|+|++++++..+ +.|.+||..+++....+..+.....+.++|
T Consensus 163 ----------~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 163 ----------KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp ----------EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred ----------eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 334445444446788899999877777654 789999999998877776322347899999
Q ss_pred eCCCCeEEEEEe
Q 035500 586 SHHSPLCLLLLH 597 (606)
Q Consensus 586 sP~g~~LLaTgS 597 (606)
+|++..++++.+
T Consensus 233 ~~d~~~lyv~~~ 244 (328)
T 3dsm_A 233 NGTRDTLYWINN 244 (328)
T ss_dssp CTTSCEEEEESS
T ss_pred ecCCCEEEEEcc
Confidence 999998776543
No 220
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.39 E-value=5.3e-07 Score=89.51 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=65.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+..-.-. .+..=.+=+.|+|++|+|..+.. ++.+.+|++|+|. +|.|+.++.+.|..+|+|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCEE
Confidence 4667777777655432111 11111244667777777777653 5667777777777 777777777777777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 113 ~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 113 YLGGNQLKSLP--SGVFDRLTKLKELRLNT 140 (251)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCCcC--hhHhccCCcccEEECcC
Confidence 77777776542 12256677777776544
No 221
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.39 E-value=6.6e-07 Score=94.38 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=76.6
Q ss_pred cCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccc
Q 035500 68 MDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGR 145 (606)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 145 (606)
++-+.+..+|+.+..--.+..+.. .. -.+||+++|+++.+..-.-. -+..=..=+.|+|++|+|..+. .++.
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~----~~-l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALL----DS-FRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHH----HH-CCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCCceEEEecCCchhhCChhHh----cc-cccCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 344566666665433333333211 11 14677777777654321100 1111123466777777777763 3567
Q ss_pred cccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+++|++|.|. .|.|+.++...|..+|+|+.|.+.+|++..+- ..++.++++|++|.+..+
T Consensus 116 l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 116 VPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSS
T ss_pred CCCCCEEECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCC
Confidence 7777777777 66777777777777777777777777776541 123666777777766553
No 222
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.38 E-value=3.8e-07 Score=93.15 Aligned_cols=103 Identities=26% Similarity=0.238 Sum_probs=55.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
..+++++|+++.++.-.-..+ ..=..=+.|+|+.|+|..+...+.+++|++|.|. .|.|+.++. .|..+|+|+.|.|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~-~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS-HNQLQSLPL-LGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC-SSCCSSCCC-CTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCccCcccCCCCCCcCCEEECC-CCcCCcCch-hhccCCCCCEEEC
Confidence 355666666655543211111 1112334566666666666655666666666666 556666653 3556666666666
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+- ..++.++++|++|.+..
T Consensus 108 ~~N~l~~l~--~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 108 SFNRLTSLP--LGALRGLGELQELYLKG 133 (290)
T ss_dssp CSSCCCCCC--SSTTTTCTTCCEEECTT
T ss_pred CCCcCcccC--HHHHcCCCCCCEEECCC
Confidence 666665441 12355566666665444
No 223
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.38 E-value=4.1e-07 Score=91.34 Aligned_cols=103 Identities=27% Similarity=0.238 Sum_probs=56.2
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.|+.++|+++.+..-.-.. +..=..=++|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEE
Confidence 5666666665443211101 1111234556666666666552 5566666666666 6666666666666666666666
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.+|++..+-. .++.++++|++|.+..
T Consensus 107 l~~n~l~~~~~--~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 107 AVETNLASLEN--FPIGHLKTLKELNVAH 133 (276)
T ss_dssp CTTSCCCCSTT--CCCTTCTTCCEEECCS
T ss_pred CCCCCccccCc--hhcccCCCCCEEECcC
Confidence 66666655421 1255666666665443
No 224
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.37 E-value=3.9e-07 Score=91.51 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=61.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||.++|+++.+.. .-...+..=.+=+.|+|++|+|..+. .++.+++|++|.|. .|.|+.+....|..||+|+.|
T Consensus 61 ~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEE
Confidence 466777776655431 11111222223456777777776665 34566677777777 667777766667777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- ..++.++++|++|.+..
T Consensus 139 ~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 139 SLGYNELQSLP--KGVFDKLTSLKELRLYN 166 (270)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccC--HhHccCCcccceeEecC
Confidence 77777666542 12356667777766544
No 225
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.37 E-value=4.9e-07 Score=95.36 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=42.9
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
++|+|++|+|..+. .++.+.+|++|.|. .|.|+.+..+.|..+|+|+.|.+.+|++..+.. ..+.++++|++|.+
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSM 148 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH--HHhcCCCCCcEEEC
Confidence 45666666665553 34556666666666 555666655556666666666666665554421 11345555666655
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 149 ~~ 150 (390)
T 3o6n_A 149 SN 150 (390)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 226
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.37 E-value=1.3e-05 Score=91.19 Aligned_cols=157 Identities=8% Similarity=-0.020 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCc----------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGE----------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGt----------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
+..++|+| |++.|+.++.++. |++|++.++.. ...+....|...+.++.|+| ++.+|+.+
T Consensus 173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~ 250 (710)
T 2xdw_A 173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLS 250 (710)
T ss_dssp SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEE
T ss_pred cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEE
Confidence 45688999 9999999998876 99999988763 22333334666788999999 56777666
Q ss_pred EC-----CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCCce--e
Q 035500 502 SD-----SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTEKP--L 569 (606)
Q Consensus 502 S~-----DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~k~--v 569 (606)
+. +..|.+||+...... ..+......+. +...+.. .|+|+|+.++..+.. +.|.+||+.++.. .
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 326 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNG---ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW 326 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSS---SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred EEccCCCccEEEEEECcccccc---cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence 54 678999998751000 00011233333 3334444 478888877666543 4699999988752 3
Q ss_pred EEEcCCCCC--CeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 570 QLFTDMHRE--PINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 570 ~~l~~gH~~--~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+. .|.. .+..+.|+++ .++++++..|+..+.
T Consensus 327 ~~l~-~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 327 KVLV-PEHEKDVLEWVACVRS-NFLVLCYLHDVKNTL 361 (710)
T ss_dssp EEEE-CCCSSCEEEEEEEETT-TEEEEEEEETTEEEE
T ss_pred eecc-CCCCCCeEEEEEEEcC-CEEEEEEEECCEEEE
Confidence 4444 3433 6888999865 457888888886654
No 227
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.37 E-value=1.7e-07 Score=96.35 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHhh-ccceEEEccCccccchHHHhhc-cCCCceeEEEccccchhccc-ccccc-----ccccEEecccC
Q 035500 86 LKEEYIMSLMHAID-QKLRVVDLSNITLRNDNLLDLC-QVGSSCHVLILRATNIRKLN-MVGRF-----MHLNTLSLDFC 157 (606)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~-----~~l~tl~l~~~ 157 (606)
+.++.....++..+ .+|+.++|+++.+....-..++ ..-.+=+.|+|++|+|..+. .++.+ ++|++|.|. .
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~ 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-Q 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-S
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-C
Confidence 34444444444433 5899999999877643333332 22334578999999988763 23344 899999999 8
Q ss_pred CCcccccccccccCccccEEEcccccccchhhhhHHh--hcCCchhhhhhcee
Q 035500 158 SSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAI--SKLPYLMELRFQMC 208 (606)
Q Consensus 158 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l--~~~~~l~~l~~~~~ 208 (606)
|.|+.+..+-|..||+|+.|.|.+|++..-.....++ .++++|++|.+..|
T Consensus 159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 8999998888999999999999999865432233455 78899999987664
No 228
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.35 E-value=2.5e-07 Score=88.60 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=66.2
Q ss_pred eeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 127 CHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
-+.|+|+.|+|..+..++.+++|++|.|. +|.++.++ .|..||+|+.|.+.+|++... ....+.++++|++|.+.
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTIN-NIHATNYN--PISGLSNLERLRIMGKDVTSD--KIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEE-SCCCSCCG--GGTTCTTCCEEEEECTTCBGG--GSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEcc-CCCCCcch--hhhcCCCCCEEEeECCccCcc--cChhhcCCCCCCEEEec
Confidence 46799999999999988999999999999 66999885 599999999999999999862 23567889999999866
Q ss_pred ee
Q 035500 207 MC 208 (606)
Q Consensus 207 ~~ 208 (606)
.|
T Consensus 121 ~n 122 (197)
T 4ezg_A 121 HS 122 (197)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 229
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.35 E-value=4.7e-05 Score=74.97 Aligned_cols=145 Identities=7% Similarity=-0.012 Sum_probs=104.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.+++++| ++++.++...++.|.+||.. +.... +....+...+.++++++ ++..+++...++.|..||...
T Consensus 17 ~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g----- 87 (299)
T 2z2n_A 17 PYGITVSD-KGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKG----- 87 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-----
T ss_pred ccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCCC-----
Confidence 78899999 88888777778999999988 65443 33223456799999997 556777766688999998763
Q ss_pred ccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
. ...+. ....+.++++.+++.++++...++.|..||. +++........+...++.+++.|++. ++++.
T Consensus 88 -----~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 88 -----I--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp -----C--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE
T ss_pred -----c--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe
Confidence 1 12222 2345899999999998888888899999999 55543322213456789999999986 56666
Q ss_pred eCCCeE
Q 035500 597 HLTTMS 602 (606)
Q Consensus 597 S~DgtI 602 (606)
..++.|
T Consensus 159 ~~~~~i 164 (299)
T 2z2n_A 159 NQNNAI 164 (299)
T ss_dssp TTTTEE
T ss_pred CCCCEE
Confidence 555544
No 230
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.34 E-value=1.4e-05 Score=80.85 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=104.4
Q ss_pred eceeEEEEcCCCCCEEEEEeCC---------CcEEEEECCC-CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeE
Q 035500 438 VRPRQFEYNPSNPSLMAFGTLD---------GEVIVINHEN-GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCV 507 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs~D---------GtVrIWDi~t-g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtI 507 (606)
.++..++++| ++++.++...+ +.-.||.+.. ++..... .+.....+++|+|++..++++.+.++.|
T Consensus 98 ~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~pngi~~spdg~~lyv~~~~~~~i 173 (297)
T 3g4e_A 98 NRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF---DQVDISNGLDWSLDHKIFYYIDSLSYSV 173 (297)
T ss_dssp EEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE---EEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred CCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe---eccccccceEEcCCCCEEEEecCCCCcE
Confidence 3478899999 88877755322 2334555432 3333222 2334568999999543355677778999
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
..||+...... +........+.. ......+++.++|++.++....+.|..||..+++.+..+. .+...+++++|.
T Consensus 174 ~~~~~d~~~G~---~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~ 249 (297)
T 3g4e_A 174 DAFDYDLQTGQ---ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECTTTCC---EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEE
T ss_pred EEEeccCCCCc---ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEe
Confidence 99998521100 000111222222 2347889999999988888888999999999999988888 466789999998
Q ss_pred -CCCCeEEEEEeCCC
Q 035500 587 -HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 -P~g~~LLaTgS~Dg 600 (606)
|++..+++|+..++
T Consensus 250 g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 250 GKNYSEMYVTCARDG 264 (297)
T ss_dssp SGGGCEEEEEEBCTT
T ss_pred CCCCCEEEEEcCCcC
Confidence 89898888887664
No 231
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.34 E-value=1.1e-06 Score=95.25 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=77.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..- ..+. .=.+=+.|+|++|++..+..++.+++|++|.|. .|.++.++ -|..+|+|+.|.+
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~--~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLA-KLTNLESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIG--TLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhc-cCCCCCEEEecCCcccccccccccCCCCEEECC-CCCcccch--hhhcCCCCCEEEC
Confidence 5799999998766532 2221 223456799999999888888889999999999 78888885 3888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++..+++|++|.+..|
T Consensus 251 ~~n~l~~~----~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 251 ANNQISNL----APLSGLTKLTELKLGAN 275 (466)
T ss_dssp CSSCCCCC----GGGTTCTTCSEEECCSS
T ss_pred CCCccccc----hhhhcCCCCCEEECCCC
Confidence 99988776 55888899998887654
No 232
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.33 E-value=1.5e-05 Score=90.61 Aligned_cols=148 Identities=9% Similarity=-0.029 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE-------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG 505 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt-------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg 505 (606)
..++|+| |++.|+.++.|+. |++|++.++.. ...+...+|...+.++.|+|+ +.+++.++.++
T Consensus 171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~ 248 (695)
T 2bkl_A 171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD-GKYLFVYILRG 248 (695)
T ss_dssp CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT-SCCEEEEEEET
T ss_pred cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC-CCEEEEEEeCC
Confidence 4678999 9999999998876 99999998763 233444456678999999994 56666666554
Q ss_pred ----eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe---CCCcEEEEECCCCce---eEEEcCC
Q 035500 506 ----CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG---YSKNVALYDINTEKP---LQLFTDM 575 (606)
Q Consensus 506 ----tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs---~Dg~I~IWDlrt~k~---v~~l~~g 575 (606)
.|.+||...+ .......+...+....| ++|.+++++. .++.|.+||+.+++. ...+. .
T Consensus 249 ~~~~~l~~~~~~~~----------~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 316 (695)
T 2bkl_A 249 WSENDVYWKRPGEK----------DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-E 316 (695)
T ss_dssp TTEEEEEEECTTCS----------SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-C
T ss_pred CCceEEEEEcCCCC----------ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-C
Confidence 5555544331 12222234445566666 4555555544 258899999988754 33343 2
Q ss_pred C-CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 576 H-REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 576 H-~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ ...+..++|+ +..++++...|+..+.
T Consensus 317 ~~~~~l~~~~~~--~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 317 DSSASLLSVSIV--GGHLSLEYLKDATSEV 344 (695)
T ss_dssp CSSCEEEEEEEE--TTEEEEEEEETTEEEE
T ss_pred CCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence 3 4568888888 4568899999988765
No 233
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.32 E-value=2.4e-07 Score=91.17 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=76.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc-hhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-. ...+..=-.=+.|+|+.|+ +..+. .++.+++|++|.|.+||.|+.++.+.|..+|+|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36888888886554211 0111122245779999997 88887 57788999999999559999999999999999999
Q ss_pred EEcccccccchhhhhHHhhcCCchh---hhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLM---ELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~---~l~~~~~ 208 (606)
|.|.+|++..+ .++..+++|+ +|.+..+
T Consensus 110 L~l~~n~l~~l----p~~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 110 LGIFNTGLKMF----PDLTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEEECCCSC----CCCTTCCBCCSEEEEEEESC
T ss_pred EeCCCCCCccc----cccccccccccccEEECCCC
Confidence 99999988876 3466677776 7776554
No 234
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.32 E-value=5.4e-06 Score=95.06 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=97.4
Q ss_pred eeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| ||++||.++.+ .+|++||+.+|+.+.. . .+...+.+++|+| + ..|+.++.|+.
T Consensus 165 ~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~--~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 165 LDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E--LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E--EEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred EEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c--CCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 67889999 99999987754 4699999999987653 1 1111235789999 4 77777776654
Q ss_pred ------EEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCC--ceeE
Q 035500 507 ------VRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTE--KPLQ 570 (606)
Q Consensus 507 ------IklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~--k~v~ 570 (606)
|++|++.+... .....+... ..+.++.|+|+|++++.++.+ ..|.+||+.++ +...
T Consensus 239 ~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred CCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999876321 122334332 248899999999988777654 38999999887 4145
Q ss_pred EEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 571 LFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 571 ~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.+. .+...+.... +|+|..+++.+..+
T Consensus 311 ~l~-~~~~~~~~~~-~~dg~~l~~~s~~~ 337 (741)
T 1yr2_A 311 ALI-PDLKAQWDFV-DGVGDQLWFVSGDG 337 (741)
T ss_dssp EEE-CSSSSCEEEE-EEETTEEEEEECTT
T ss_pred Eec-CCCCceEEEE-eccCCEEEEEECCC
Confidence 555 3445555543 48888766665443
No 235
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.31 E-value=6.8e-07 Score=87.44 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=76.1
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhccc---cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+.|+++++.++. .=..+ +..-+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..+++|+.|.|
T Consensus 14 ~~l~~s~n~l~~-iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCccc-CccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEEC
Confidence 478888866543 11112 122378999999999883 37889999999999 88999999989999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+- -.++..|++|++|.+..
T Consensus 89 s~N~l~~~~--~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 89 TSNRLENVQ--HKMFKGLESLKTLMLRS 114 (220)
T ss_dssp CSSCCCCCC--GGGGTTCSSCCEEECTT
T ss_pred CCCccCccC--HhHhcCCcCCCEEECCC
Confidence 999998762 23478899999888655
No 236
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.31 E-value=2.2e-05 Score=87.97 Aligned_cols=142 Identities=17% Similarity=0.120 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
...++++...+++|.+||..+++.+..+.. + ..+.++.|+| +++++++++.|+.|.+||+.... ...+
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g--~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t--------~~~v 233 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-G--YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKE--------PTTV 233 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEEC-S--SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSS--------CCEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeC-C--CCccceEECC-CCCEEEEEcCCCeEEEEECCCCC--------CcEe
Confidence 344677778899999999999999887753 2 3578999999 67889999999999999996110 2345
Q ss_pred EEeecCCCeEEEEEc----cCCCEEEEEeC-CCcEEEEECCCCceeEEEcCC---------CCC-CeEEEEEeCCCCeEE
Q 035500 529 ATYYDFEQLTSVHVN----STDDQFLASGY-SKNVALYDINTEKPLQLFTDM---------HRE-PINVAKFSHHSPLCL 593 (606)
Q Consensus 529 ~t~~~~~~V~sV~~s----p~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~g---------H~~-~I~sV~fsP~g~~LL 593 (606)
..+........++|+ |+|++++++.. ++++.++|..+.+++..+..+ |.. .+..+..+++++..+
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 555554456899999 69988777765 599999999999988776621 222 678888899888766
Q ss_pred EEEeCCCeE
Q 035500 594 LLLHLTTMS 602 (606)
Q Consensus 594 aTgS~DgtI 602 (606)
++...++.|
T Consensus 314 v~~~~~g~v 322 (567)
T 1qks_A 314 VNVKETGKI 322 (567)
T ss_dssp EEETTTTEE
T ss_pred EEecCCCeE
Confidence 666666655
No 237
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.31 E-value=1.1e-06 Score=98.69 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=88.9
Q ss_pred hcCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccch---HHHhhccCCCceeEEEccccchhccc--
Q 035500 67 EMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKLN-- 141 (606)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~-- 141 (606)
.++-+.+..+|+.+..-..+..... .. -.+||+++|+++.+..- .+..+ ..=+.|+|++|.|..+.
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALL----DS-FRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHH----HH-CCCCSEEECTTSCCCEECTTTTTTC----TTCCEEECCSSCCCCCCTT
T ss_pred cccCCCceEEEeeCCCCCCcCHHHH----cc-CCCCcEEECCCCCCCCCChHHhcCC----CCCCEEECCCCcCCCCCHH
Confidence 3444566667765443333333221 11 15789999998765432 22221 23467999999888876
Q ss_pred cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 142 MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 142 ~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.++.+++|.+|+|. .|.|+.++...|..+|+|+.|.|.+|++..+.. .++.++++|++|.+..+
T Consensus 118 ~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 118 VFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSN 181 (597)
T ss_dssp TTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTS
T ss_pred HHcCCCCCCEEEee-CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCC
Confidence 46788899999999 788999988888899999999999988876522 35777888888887654
No 238
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.28 E-value=6.4e-07 Score=87.63 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=38.3
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
-+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.+..+.|..+|+|+.|.|.+|+|..+- -..+..+++|++|.
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGNKITELP--KSLFEGLFSLQLLL 110 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCCcCCccC--HhHccCCCCCCEEE
Confidence 344555555555544 34455555555555 55555555555555555555555555555331 11234455555554
Q ss_pred hc
Q 035500 205 FQ 206 (606)
Q Consensus 205 ~~ 206 (606)
+.
T Consensus 111 L~ 112 (220)
T 2v9t_B 111 LN 112 (220)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 239
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.27 E-value=9.1e-07 Score=92.93 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=59.0
Q ss_pred cceEEEccCccccchHHHhhcc-CCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQ-VGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.++.++|++|.+..-.- +.+. .=..=+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..|++|+.|
T Consensus 40 ~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCEE
Confidence 46666776655432111 1111 1123355777777766665 35666667777777 566777666666777777777
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+ .-.++..|++|++|.+..
T Consensus 118 ~L~~N~i~~~--~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 118 LLYNNHIVVV--DRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp ECCSSCCCEE--CTTTTTTCTTCCEEECCS
T ss_pred ECCCCcccEE--CHHHhCCcccCCEEECCC
Confidence 7777766654 123455566666665443
No 240
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.27 E-value=2.2e-05 Score=79.40 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+.+++++| ++++++ +.++.|..||. +|+.+..+.. ++...+.++.+.+ ++..+++.+. ++.|..+|...
T Consensus 39 ~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~G---- 108 (276)
T 3no2_A 39 CNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKG---- 108 (276)
T ss_dssp CCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTS----
T ss_pred CcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEECC-CCCEEEEecCCCCEEEEEeCCC----
Confidence 56788999 899888 45788999999 7998887764 2234688889988 6788888887 77777777533
Q ss_pred cccccCCcceEEee-------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 519 VADARGNSSVATYY-------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
+.+..+. .+.....++..++|+++++.+.++.|..||.. |+.+..+.. .....++.+.+++.
T Consensus 109 -------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~- 177 (276)
T 3no2_A 109 -------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGD- 177 (276)
T ss_dssp -------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTSC-
T ss_pred -------CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCCC-
Confidence 1222222 12235566788999999999999999999998 999988883 24566788888887
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
++++++.++.|.
T Consensus 178 ~~v~~~~~~~v~ 189 (276)
T 3no2_A 178 CLVACGDAHCFV 189 (276)
T ss_dssp EEEECBTTSEEE
T ss_pred EEEEeCCCCeEE
Confidence 466666666554
No 241
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.27 E-value=5e-05 Score=85.06 Aligned_cols=149 Identities=8% Similarity=-0.040 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCceEEEEeccCCCCCEEEEEEe----eCCCCEEEEE-ECCCeEEEEeC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE--NGNVACYIPSIGGTNSVLGLCWL----KKYPSKLVAG-SDSGCVRLFDL 512 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~--tg~~v~~~~~~gH~~~V~~L~fs----p~~~~~LaSg-S~DgtIklWDl 512 (606)
+..+.|+| +++++++++.||.|.+||+. +++.+..+.. + .....++|+ | ++++++.+ -.+++|.++|.
T Consensus 199 p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G--~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 199 VHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G--SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C--SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEET
T ss_pred ccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C--CCCceeEEccccCC-CCCEEEEEEccCCeEEEEEC
Confidence 55788999 99999999999999999995 7777776653 2 236799999 5 55666555 45699999998
Q ss_pred CCCCCCcccccCCcceEEeec------------CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 035500 513 NHIPPKVADARGNSSVATYYD------------FEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTDMHREP 579 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~------------~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~ 579 (606)
.+. .++.++.. ...+..+..++++. ++++...+|.|.++|....+............
T Consensus 274 ~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 274 ETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp TTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 773 23333321 12478888888875 55555667999999998764332222123456
Q ss_pred eEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 580 INVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 580 I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
...+.|+|+++++++++..+..|.
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ccCceECCCCCEEEEEeCCCCeEE
Confidence 778999999999888887666654
No 242
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.27 E-value=1.6e-06 Score=97.28 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=80.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- ..+..=..=+.|+|++|.|..+.. ++.+++|++|+|. .|.|+.+..+.|..||+|+.|
T Consensus 99 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEE
Confidence 589999999987654211 111112245789999999998874 6889999999999 889999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+ .+..+|+|+.|.+..+
T Consensus 177 ~L~~N~l~~~-----~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 177 QLSSNRLTHV-----DLSLIPSLFHANVSYN 202 (597)
T ss_dssp ECTTSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred ECcCCCCCCc-----ChhhhhhhhhhhcccC
Confidence 9999999876 4677888888776543
No 243
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.25 E-value=1.4e-06 Score=87.52 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=82.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||+++|+++.+.. +..+. .=..=+.|+|++|+|..+.. ++.+++|++|.|. .|.|+.+....|..||+|+.|
T Consensus 63 ~~L~~L~l~~n~l~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD--ISALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp TTCCEEECTTSCCCC--CGGGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCC--chhhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEE
Confidence 579999999987654 22222 11245779999999998875 7889999999999 889999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+- -..+.++++|++|.+..|
T Consensus 139 ~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 139 NLAHNQLQSLP--KGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCccC--HHHhccCccCCEEECCCC
Confidence 99999988652 133678999999987764
No 244
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.25 E-value=3e-06 Score=87.45 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
.+|++++|+++.+..- .+..+ ..=+.|+|++|+|..+ ..++.+++|++|+|. .|.|+.++...| ++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~---~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGL----QHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS-KNHLVEIPPNLP---SSL 125 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC----TTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-SSCCCSCCSSCC---TTC
T ss_pred CCCeEEECCCCcCCccCHhHhhCC----CCCcEEECCCCccCccCHhHhhCcCCCCEEECC-CCcCCccCcccc---ccC
Confidence 4566667666554321 22222 2345577777766666 345666677777776 666666665544 666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|.+.+|++..+. ..++.++++|++|.+..
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCS
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCC
Confidence 77777666666542 12355666666666544
No 245
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.24 E-value=8.2e-07 Score=85.21 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=82.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+.. +.+-+..=-.=+.|+|++|.|..+.. ++.+.+|++|.|+ .|+|+.+..+.|..||+|+.|
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCccCEeCHHHhCCCCCCCEE
Confidence 478999999987652 22222222345789999999999874 7899999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+-. .++..|++|+.|.++.
T Consensus 108 ~L~~N~l~~~~~--~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGNDISVVPE--GAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSSCCCBCCT--TTTTTCTTCCEEECCS
T ss_pred ECCCCCCCeeCh--hhhhcCccccEEEeCC
Confidence 999999986621 3477889999988764
No 246
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.23 E-value=1.1e-06 Score=91.27 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=23.3
Q ss_pred eEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEccc
Q 035500 128 HVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCE 181 (606)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~ 181 (606)
+.|+|++|.|..+. .++.+.+|++|+|. .|.++.+++. |..||+|+.|.|.+
T Consensus 107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls-~n~l~~lp~~-l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPAS-IASLNRLRELSIRA 159 (328)
T ss_dssp SEEEEESSCCCCCCSCGGGGTTCSEEEEE-SCCCCCCCGG-GGGCTTCCEEEEEE
T ss_pred CEEECCCCCccchhHHHhccCCCCEEECC-CCccccCcHH-HhcCcCCCEEECCC
Confidence 33444444444443 23444444444444 4444444332 44444444444444
No 247
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.23 E-value=1.4e-06 Score=82.32 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=40.6
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccch
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l 187 (606)
.=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..||+|+.|.|.+|+|..+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN-SNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECC-CCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 3456777777776663 35666777777777 6667777666666777777777777766654
No 248
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.23 E-value=7.1e-07 Score=92.68 Aligned_cols=77 Identities=27% Similarity=0.329 Sum_probs=41.5
Q ss_pred eEEEccccchhccc-cccccccccEEecccCCCcccccccc--------cccCccccEEEcccccccchhhhhHHhhcCC
Q 035500 128 HVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDC--------FSCMPYLMCLSMCETRIVNLWTTTAAISKLP 198 (606)
Q Consensus 128 ~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~--------~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~ 198 (606)
+.|+|++|+|..+. .++.+++|++|.|.+|+.++.++... |..||+|+.|.|.+|++..+. +.+.+++
T Consensus 130 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~ 206 (328)
T 4fcg_A 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQ 206 (328)
T ss_dssp SEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCT
T ss_pred CEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCC
Confidence 45666666665554 34455566666666555555555432 334666666666666555332 2355555
Q ss_pred chhhhhhce
Q 035500 199 YLMELRFQM 207 (606)
Q Consensus 199 ~l~~l~~~~ 207 (606)
+|++|.+..
T Consensus 207 ~L~~L~L~~ 215 (328)
T 4fcg_A 207 NLKSLKIRN 215 (328)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEccC
Confidence 566555444
No 249
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.23 E-value=1.3e-06 Score=85.77 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=69.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|++|+|..+. .++.+++|++|+|. +|.|+.+..+.|..+|+|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC-CCcCCccChhHhCcchhhCeE
Confidence 677888888766543211 11111124567888888887775 35677888888888 778888887778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|++..+- .++.++++|+.|.+..
T Consensus 118 ~Ls~N~l~~lp---~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 118 FMCCNKLTELP---RGIERLTHLTHLALDQ 144 (229)
T ss_dssp ECCSSCCCSCC---TTGGGCTTCSEEECCS
T ss_pred eccCCcccccC---cccccCCCCCEEECCC
Confidence 88888877552 3456677777776544
No 250
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.22 E-value=1.3e-06 Score=88.79 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=64.4
Q ss_pred ccceEEEccCccccc-----hHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccc-cccccCc
Q 035500 100 QKLRVVDLSNITLRN-----DNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMP 172 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p 172 (606)
.+|+.++|+++.+.. ..+.. -..-+.|+|++|.+..+. .++.+.+|++|.|. .|.|+.+.. ..|..||
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFG----TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHS----CSCCCEEECCSCSEEEEEEEEETCTTCCEEECT-TSEEESSTTTTTTTTCT
T ss_pred ccCCEEECCCCccCcccCccccccc----ccccCEEECCCCccccChhhcCCCCCCCEEECC-CCcccccccchhhhhcc
Confidence 467777777765542 11111 234456777777777665 35667777777777 677777765 5677777
Q ss_pred cccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 173 YLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 173 ~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+|+.|.+.+|++.... ..++.++++|++|.+..+
T Consensus 127 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 127 NLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTC
T ss_pred CCCEEECCCCcCCccc--hhhcccCcCCCEEECCCC
Confidence 7777777777765431 234566777777765553
No 251
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.22 E-value=1.2e-06 Score=89.15 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=80.6
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc----cccccccccEEecccCCCcccccccccccCccc
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
..+|+.++|+++.+.. .-.+.+..=-.=+.|+|++|+|..++ .+..+.+|++|.|. .|.|+.++.. |..+|+|
T Consensus 27 ~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~l~~~-~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSN-FLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-SCSEEEEEEE-EETCTTC
T ss_pred CCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-CCccccChhh-cCCCCCC
Confidence 3579999999976652 11222223335678999999998763 34468999999999 8899999876 8899999
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
+.|.+.+|++..+.. ..++.++++|++|.+..|
T Consensus 104 ~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 104 EHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp CEEECTTSEEESSTT-TTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCccccccc-chhhhhccCCCEEECCCC
Confidence 999999999987632 346788999999987664
No 252
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.22 E-value=1.3e-06 Score=89.20 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=81.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc-ccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM-VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|+.++|+++.+..- ... ..-.+=+.|+|++|+|..+.. ++.+++|++|.|. .|.|+.++.+.|..|++|+.|.
T Consensus 55 ~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKL--QVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp TTCCEEECTTSCCCEE--ECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCcc--cCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEE
Confidence 6899999999776531 111 222345789999999998874 5688999999999 8999999999999999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.+|++..+- ..++.++++|++|.+..
T Consensus 131 L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 131 LKGNELKTLP--PGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECTT
T ss_pred CCCCCCCccC--hhhcccccCCCEEECCC
Confidence 9999998762 23467889999988655
No 253
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.21 E-value=1.1e-06 Score=88.46 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=75.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccc-hhcc--ccccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-.-..+ ..=..=+.|+|++|. +..+ ..++.+++|++|+|. .|.|+.+....|..+|+|+.
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHhhCCcCCCE
Confidence 578899998876543211111 111235678998887 7777 356788899999998 88888888888888999999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.|.+|++..+- ..++.++++|++|.+..+
T Consensus 134 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 134 LYLQDNALQALP--DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSSCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccccC--HhHhccCCCccEEECCCC
Confidence 999998887652 134677888888886653
No 254
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.20 E-value=4.3e-05 Score=81.73 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=103.4
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC--eEEEEeCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG--CVRLFDLNHIP 516 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg--tIklWDl~~~~ 516 (606)
.+..++|+| +++++++...++.|++||..++....... ... ... ++|+| ++..++++..++ .|.+||.....
T Consensus 132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHP--GFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEE--TCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeec--cCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence 377899999 88888888888999999999877765443 222 233 89998 557788887766 78888876531
Q ss_pred CCcccccCCcceEEe----e-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEE---cCCCCCCe--EEEEEe
Q 035500 517 PKVADARGNSSVATY----Y-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLF---TDMHREPI--NVAKFS 586 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~----~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l---~~gH~~~I--~sV~fs 586 (606)
....+ . ....+.+++++|++..++.+..++.|..||..++...... ..++...- +.++|+
T Consensus 206 ----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 206 ----------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp ----------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred ----------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 12222 1 2344788999996555555777889999999877643220 21222222 389999
Q ss_pred CCCCeEEEEEeCCCeEEE
Q 035500 587 HHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIRc 604 (606)
|++..++++.+.++.|+.
T Consensus 276 p~~g~lyv~d~~~~~I~~ 293 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYK 293 (409)
T ss_dssp TTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEeCCCCEEEE
Confidence 987778888887777653
No 255
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.20 E-value=9e-07 Score=86.56 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=78.6
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
...++.++|++|.+..-.-.+.+..=..=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+..+.|..||+|+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-CCccCccCHhHhcCCcCCCE
Confidence 34567888888766532111112222345789999999998874 7889999999999 89999999989999999999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.|.+|++..+- -.++..+++|++|.++.
T Consensus 110 L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 110 LMLRSNRITCVG--NDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp EECTTSCCCCBC--TTSSTTCTTCSEEECTT
T ss_pred EECCCCcCCeEC--HhHcCCCccCCEEECCC
Confidence 999999988662 24466777788777544
No 256
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.19 E-value=0.00017 Score=70.95 Aligned_cols=147 Identities=3% Similarity=-0.091 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++| ++.+.++...++.|..||.. ++. ..+....+...+.++++.+ ++.++++...++.|..||... .
T Consensus 59 ~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g-~--- 130 (299)
T 2z2n_A 59 VMCLTISS-DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDG-K--- 130 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTC-C---
T ss_pred eeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCC-C---
Confidence 77899999 88888887778999999986 443 2233223456789999997 557777777788999999832 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQL-FTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~-l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....... ....+.++++.+++.++++...++.|..||. +++.... .. .+...+..+++++++. ++++..
T Consensus 131 ------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g~-l~v~~~ 201 (299)
T 2z2n_A 131 ------IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP-TPASGPVGITKGNDDA-LWFVEI 201 (299)
T ss_dssp ------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS-STTCCEEEEEECTTSS-EEEEET
T ss_pred ------EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC-CCCCcceeEEECCCCC-EEEEcc
Confidence 1111111 2345899999999998888877899999999 6665433 23 3456788999999987 566665
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
.++.|.
T Consensus 202 ~~~~i~ 207 (299)
T 2z2n_A 202 IGNKIG 207 (299)
T ss_dssp TTTEEE
T ss_pred CCceEE
Confidence 555443
No 257
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.19 E-value=9e-07 Score=84.60 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=67.3
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhcccc---ccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+.|+++++.++. .=.++.. .-+.|+|++|+|..+.. ++.+.+|++|+|+ .|.|+.+..+.|..||+|+.|.|
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc-CccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEEC
Confidence 567777765532 1112222 55778888888887763 6788888888888 78888887777888888888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-. .++..+++|++|.++.
T Consensus 86 s~N~l~~~~~--~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 86 GENKIKEISN--KMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CSCCCCEECS--SSSTTCTTCCEEECCS
T ss_pred CCCcCCccCH--HHhcCCCCCCEEECCC
Confidence 8888876521 2355666666666433
No 258
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=93.63 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=45.3
Q ss_pred eeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 127 CHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 127 ~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
=+.|+|+.|+|..+ ..++.+.+|++|+|. .|.|+.+....|..+|+|+.|.|.+|++..+. ..++.++++|++|.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEEC-CTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECC-CCccceeChhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEe
Confidence 34566666666555 234556666666666 55666666556666666666666666665442 23455666666665
Q ss_pred hce
Q 035500 205 FQM 207 (606)
Q Consensus 205 ~~~ 207 (606)
+..
T Consensus 183 l~~ 185 (477)
T 2id5_A 183 LRH 185 (477)
T ss_dssp EES
T ss_pred CCC
Confidence 554
No 259
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.18 E-value=1.3e-06 Score=85.30 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=79.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|+.++|+++.+..-.- +.+..=..=+.|+|++|+|..+ +.++.+.+|++|+|. .|.|+.++...|..||+|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CCcCCccCHhHccCCCCCCEE
Confidence 578999999976543110 1111112457899999999998 578899999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+|+|..+- ..++..+++|++|.+.+
T Consensus 110 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 110 LLNANKINCLR--VDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp ECCSSCCCCCC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCCCCEeC--HHHcCCCCCCCEEECCC
Confidence 99999988662 23566777777776433
No 260
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.17 E-value=1.4e-06 Score=94.76 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.++|+++.+..-.+..+ ..=+.|+|++|+|..+. ++.+++|++|.|. .|.|+.++ |..+|+|+.|.+
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l----~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~-~N~l~~l~---~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQN----TNLTYLACDSNKLTNLD-VTPLTKLTYLNCD-TNKLTKLD---VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTC----TTCSEEECCSSCCSCCC-CTTCTTCCEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeEccccC----CCCCEEECcCCCCceee-cCCCCcCCEEECC-CCcCCeec---CCCCCcCCEEEC
Confidence 467777777766544211111 23466777777777775 6677777777777 66777763 777777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .+.++++|++|.+..|
T Consensus 135 ~~N~l~~l-----~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 135 ARNTLTEI-----DVSHNTQLTELDCHLN 158 (457)
T ss_dssp TTSCCSCC-----CCTTCTTCCEEECTTC
T ss_pred CCCcccee-----ccccCCcCCEEECCCC
Confidence 77777665 3666777777765554
No 261
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.17 E-value=1.5e-06 Score=87.10 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=70.1
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+=+.|+|++|+|..+. .++.+++|++|+|. .|.|+.+..+.|..+|+|+.|.|.+|++..+ ...++.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCCccCcc--ChhhhcCCccccEE
Confidence 4578999999999987 67889999999999 7899999998999999999999999999876 22468889999999
Q ss_pred hhcee
Q 035500 204 RFQMC 208 (606)
Q Consensus 204 ~~~~~ 208 (606)
.+..+
T Consensus 106 ~l~~n 110 (276)
T 2z62_A 106 VAVET 110 (276)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 87654
No 262
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.17 E-value=1.7e-06 Score=86.93 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=83.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +..+.. ..=+.|+|++|+|..+..++.+.+|++|+|. .|.|+.++ .|..||+|+.|.|
T Consensus 85 ~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls-~N~i~~~~--~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--LNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIR-NNKLKSIV--MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC--CTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECT-TSCCCBCG--GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC--cCcccc--CcccEEEccCCccCCChhhcCcccccEEECC-CCcCCCCh--HHccCCCCCEEEC
Confidence 678899998876654 333433 5567799999999999888899999999999 88899985 4888999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCC
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKD 213 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~ 213 (606)
.+|+|..+ .++.++++|+.|.+..+.+...
T Consensus 158 ~~N~i~~~----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch----HHhccCCCCCEEeCCCCcccCC
Confidence 99999887 7888899999999888775443
No 263
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.16 E-value=1.5e-06 Score=91.24 Aligned_cols=171 Identities=18% Similarity=0.107 Sum_probs=113.6
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--cc-ccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
++|+++++.+.. +=.++. -.-+.|+|++|+|..+.. ++ .+.+|++|+|. .|.|+.+..+-|..||+|+.|.|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEEC
Confidence 467777754332 101121 224789999999998863 44 88999999999 89999999889999999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhc
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLR 259 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (606)
.+|++..+- -.++..|++|++|.+..+. =+ .+ .-+
T Consensus 96 s~N~l~~~~--~~~~~~l~~L~~L~L~~N~---i~------------------------------------~~----~~~ 130 (361)
T 2xot_A 96 SSNHLHTLD--EFLFSDLQALEVLLLYNNH---IV------------------------------------VV----DRN 130 (361)
T ss_dssp CSSCCCEEC--TTTTTTCTTCCEEECCSSC---CC------------------------------------EE----CTT
T ss_pred CCCcCCcCC--HHHhCCCcCCCEEECCCCc---cc------------------------------------EE----CHH
Confidence 999988762 2347788999999866532 00 00 012
Q ss_pred ccchhhhhccCCCCCCCcceeccccc----C-CCCCCCCcccccc-ccc-----c---hhhhhhhccCCCCcccchhhH
Q 035500 260 TMNLMELSSCLSPNLNGHAEMLDEVN----D-SNEFPGGAHKQDL-MDA-----N---VKLKKYISHHPSPICFEKHYR 324 (606)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~-~l~-----~---v~L~~~l~~~~npi~~~~~YR 324 (606)
.|.-+..|..|++.+|++-.+...+- . +++..+-+..|.+ .+. . ..++ .+.+.+||+.+.-..+
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~-~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN-GLYLHNNPLECDCKLY 208 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT-TEECCSSCEECCHHHH
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc-eEEecCCCccCCcCcH
Confidence 23445677777888888777666542 2 4555555555554 221 1 1245 7888899998765433
No 264
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.15 E-value=2.6e-06 Score=93.37 Aligned_cols=56 Identities=13% Similarity=-0.045 Sum_probs=30.2
Q ss_pred hhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-ccc----c-hhhhhhhccCCCCccc
Q 035500 263 LMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-MDA----N-VKLKKYISHHPSPICF 319 (606)
Q Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~----~-v~L~~~l~~~~npi~~ 319 (606)
.+..|..|++.+|++-.+.+.+.. +++..+-+.+|.+ .+. . -.|+ ++.+.+||+.+
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~-~L~l~~N~l~c 251 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE-HFDLRGNGFHC 251 (487)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC-EEECTTCCBCH
T ss_pred cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC-EEEcCCCCCcC
Confidence 455666777777776666555544 4444444444443 111 1 1344 56666666663
No 265
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.15 E-value=2.4e-06 Score=80.10 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=93.2
Q ss_pred CcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--cccc
Q 035500 69 DSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRF 146 (606)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 146 (606)
+.+.+..+|+.+-.-..+.+ +...-.+|+.++|++|.+.. + +-...-..-+.|+|++|+|..+.. ++.+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~------~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCCceEEEeeCCCCchhHH------hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34556666664322222211 12223489999999987764 2 222233467899999999999863 5889
Q ss_pred ccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhh-hHHhhcCCchhhhhhcee
Q 035500 147 MHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTT-TAAISKLPYLMELRFQMC 208 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~~~ 208 (606)
++|++|+|+ +|.|+.++. +.|..+|+|+.|++.+|.+..+-.. ...+..+|+|+.|.+..+
T Consensus 88 ~~L~~L~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999 889999986 5789999999999999999866322 224788999999986553
No 266
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.14 E-value=7.9e-05 Score=74.33 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCCEEEE-------EeCCCcEEEEECCCCceEEEEe--ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAF-------GTLDGEVIVINHENGNVACYIP--SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaS-------Gs~DGtVrIWDi~tg~~v~~~~--~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklW 510 (606)
+.+++|++ ++.++++ ++.++.|.+||..+++...... ..++...+.+++++++++. ++.++..+.|.+|
T Consensus 20 ~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 20 AEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVV 97 (314)
T ss_dssp CEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEE
T ss_pred ccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEE
Confidence 66889998 8888888 6788999999988877643221 0124567999999984244 4444445578899
Q ss_pred eCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEECCCCceeEEEc
Q 035500 511 DLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYS---------------KNVALYDINTEKPLQLFT 573 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~D---------------g~I~IWDlrt~k~v~~l~ 573 (606)
|.. +... ... .... .....+.++++.++|+++++...+ +.|..||.. ++......
T Consensus 98 d~~-g~~~--~~~----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 98 QTD-GTFE--EIA----KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp ETT-SCEE--ECC----SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred eCC-CCEE--EEE----eccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 987 3210 000 0000 012347899999999988877655 567777766 55433332
Q ss_pred CCCCCCeEEEEEe----CCCCeEEEEEeCCCeEE
Q 035500 574 DMHREPINVAKFS----HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 574 ~gH~~~I~sV~fs----P~g~~LLaTgS~DgtIR 603 (606)
+....+.++|+ |++..++++.+.++.|.
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~ 201 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEE
Confidence 34567889999 99987777777666554
No 267
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.14 E-value=2.7e-06 Score=78.88 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=83.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-ccc-ccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LNM-VGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|++++|+++.+..- .-...-..-+.|+|++|+|.. +.. ++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus 49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB-SSSCCSSGGGGGGSSCSCCCE
T ss_pred CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc-CCccCcchhHHHHhcCCCCCE
Confidence 6799999999876643 333333456889999999998 553 3459999999999 789999864 67999999999
Q ss_pred EEcccccccchhhh-hHHhhcCCchhhhhhceec
Q 035500 177 LSMCETRIVNLWTT-TAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 177 l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~~~~ 209 (606)
|.+.+|++..+-.. ...+.++|+|++|.+..|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999876331 2468889999999977654
No 268
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.14 E-value=2e-06 Score=89.55 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..-.- +.+..=..=+.|+|++|.|..+.. ++.+.+|++|+|. .|.|+.++. ..|..+|+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL-GNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT-TCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC-CCCCcccCchhhhccCCCCcE
Confidence 456777776655442110 001111233556666666666553 4566666666666 566666665 56666666666
Q ss_pred EEccccc-ccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETR-IVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|+ +..+ ...++.++++|++|.+..+
T Consensus 154 L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 154 LRVGNMDTFTKI--QRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EEEEESSSCCEE--CTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcccccc--CHHHccCCCCCCEEECCCC
Confidence 6666662 3322 1134555666666665543
No 269
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.14 E-value=2.5e-06 Score=89.38 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=58.2
Q ss_pred ccceEEEccCccccchHHHhhccC----CCceeEEEccccchhcccc------cccc-ccccEEecccCCCccccccccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQV----GSSCHVLILRATNIRKLNM------VGRF-MHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~------~~~~-~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
.+|+.++|+++.++......+++. .-.=+.|+|++|.|..... +..+ .+|++|+|. .|.|+......|
T Consensus 51 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l 129 (362)
T 3goz_A 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEF 129 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHH
T ss_pred CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHH
Confidence 467777777766665544444431 1333457777776665431 2233 567777777 666666644332
Q ss_pred ----ccC-ccccEEEcccccccchh--hhhHHhhcCC-chhhhhhcee
Q 035500 169 ----SCM-PYLMCLSMCETRIVNLW--TTTAAISKLP-YLMELRFQMC 208 (606)
Q Consensus 169 ----~~~-p~l~~l~~~~~~~~~l~--~~~~~l~~~~-~l~~l~~~~~ 208 (606)
..+ ++|+.|.|.+|++...- .-..++.+++ +|++|.+..|
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 222 36777777777666321 1123445555 6666665543
No 270
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.14 E-value=1.9e-06 Score=85.50 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=37.2
Q ss_pred eEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++.+.|..||+|+.|.|.+|++..+-. .++.++++|++|.+
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l 186 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITL 186 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECc-CCcCCccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEe
Confidence 445555555554442 3445555555555 445555554445555555555555555543311 23444555555544
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 187 ~~ 188 (251)
T 3m19_A 187 FG 188 (251)
T ss_dssp CS
T ss_pred eC
Confidence 33
No 271
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.13 E-value=2.1e-06 Score=82.45 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+.. ...+.+..=-.=+.|+|+.|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC-CCcCcccCHhHhccCCcCCEE
Confidence 578888888876652 222223333455778998888887764 6788889999998 788888888888888999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. .++.++++|++|.+..+
T Consensus 130 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 130 RLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSC
T ss_pred ECCCCccceeCH--HHhccCCCccEEEecCC
Confidence 998888876522 33677888888887765
No 272
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.13 E-value=5.7e-06 Score=85.33 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=44.8
Q ss_pred ceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 126 SCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.-++|+|+.|+|..+. .++.+.+|++|+|. .|.|+.+..+.|..||+|+.|.+.+|++..+-..+ .++|++|
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L 128 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVEL 128 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEE
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEE
Confidence 3455666666666663 35666666666666 55666665556666666666666666665442211 1556666
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+..
T Consensus 129 ~l~~ 132 (332)
T 2ft3_A 129 RIHD 132 (332)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 6544
No 273
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.13 E-value=1.3e-06 Score=94.44 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=55.8
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYL 174 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l 174 (606)
..||++||+++.+..- .+..+ ..=+.|+|++|.|..+ ..++.+.+|++|+|. .|.|+.++...|..+|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECC-CCcCCccCcccccCCCCC
Confidence 3556666666544321 11111 1235566666666665 245566666666666 566666666666666666
Q ss_pred cEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 175 MCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 175 ~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|.+.+|++..+. -.++.++++|++|.+..
T Consensus 107 ~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 107 TKLDISENKIVILL--DYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp CEEECTTSCCCEEC--TTTTTTCTTCCEEEECC
T ss_pred CEEECCCCccccCC--hhHccccccCCEEECCC
Confidence 66666666665441 12355566666665443
No 274
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.12 E-value=2e-06 Score=82.61 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=82.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. ...+.+..=-+=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CCcCCccCHhHhcCccCCCEE
Confidence 478999999987652 222222222356789999999998874 6789999999999 889999999899999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. .++.++++|++|.+..+
T Consensus 106 ~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 106 ALNTNQLQSLPD--GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred EcCCCcCcccCH--hHhccCCcCCEEECCCC
Confidence 999999986622 34778999999987664
No 275
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.12 E-value=6.2e-05 Score=77.44 Aligned_cols=140 Identities=8% Similarity=-0.050 Sum_probs=96.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++. ++.+.++...+++|.+||..+++.+..+. .......++++++ +..+++...++.|.+||..+.
T Consensus 46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~---- 115 (328)
T 3dsm_A 46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTY---- 115 (328)
T ss_dssp EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTT----
T ss_pred ceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCC----
Confidence 4556664 44566666678999999999999988764 2356899999884 444444448999999999873
Q ss_pred ccccCCcceEEeecCC------CeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 520 ADARGNSSVATYYDFE------QLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~------~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
.....+.... ....+++ ..+.++++.. .++.|.+||+.+++.+..+.. ......++++|+|. +
T Consensus 116 ------~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~-l 185 (328)
T 3dsm_A 116 ------EITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNK-M 185 (328)
T ss_dssp ------EEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSE-E
T ss_pred ------eEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCC-E
Confidence 2333444322 4556767 3344444443 489999999999998888773 34457899999987 4
Q ss_pred EEEEeCC
Q 035500 593 LLLLHLT 599 (606)
Q Consensus 593 LaTgS~D 599 (606)
++++..+
T Consensus 186 ~v~~~~~ 192 (328)
T 3dsm_A 186 WTITDGG 192 (328)
T ss_dssp EEEBCCB
T ss_pred EEEECCC
Confidence 5555443
No 276
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.12 E-value=9.3e-07 Score=86.87 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceeEEEccccchhcccc--ccccccccEEecccCC-CcccccccccccCccccEEEccc-ccccchhhhhHHhhcCCchh
Q 035500 126 SCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCS-SLASLHEDCFSCMPYLMCLSMCE-TRIVNLWTTTAAISKLPYLM 201 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~-~~~~~~~~~~~~~p~l~~l~~~~-~~~~~l~~~~~~l~~~~~l~ 201 (606)
+=+.|+|++|+|..+.. ++.+++|++|.|. .| .|+.++...|..+|+|+.|.|.+ |++..+- ..++..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCC
Confidence 45689999999999874 7889999999999 55 59999999999999999999998 9888662 23577899999
Q ss_pred hhhhceec
Q 035500 202 ELRFQMCL 209 (606)
Q Consensus 202 ~l~~~~~~ 209 (606)
+|.+..+.
T Consensus 109 ~L~l~~n~ 116 (239)
T 2xwt_C 109 FLGIFNTG 116 (239)
T ss_dssp EEEEEEEC
T ss_pred EEeCCCCC
Confidence 99987753
No 277
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.11 E-value=1.7e-06 Score=81.18 Aligned_cols=98 Identities=24% Similarity=0.322 Sum_probs=69.9
Q ss_pred eEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 103 RVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
++|+++++.+.. .=.++ +-.-+.|+|++|+|..+. .++.+.+|++|+|+ .|.|+.++.+-|..||+|+.|.|.
T Consensus 12 ~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECC
Confidence 567777755432 00112 234467888888888884 47788888888888 778888888888888888888888
Q ss_pred cccccchhhhhHHhhcCCchhhhhhce
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+|++..+-. .++.+|++|++|.+..
T Consensus 87 ~N~l~~~~~--~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQLKSIPR--GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCS
T ss_pred CCccCEeCH--HHhcCCCCCCEEEeCC
Confidence 888876522 2467788888887654
No 278
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.11 E-value=1.8e-06 Score=82.45 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=82.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.++.-.-..++..=-.=+.|+|+.|+|..+ ..++.+.+|++|.|. .|.|+.+...-|..||+|+.|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-ENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-CCcCCccCHHHhcCCCCCCEE
Confidence 37899999998765322111122223457899999999998 468889999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+- -.++..+++|++|.+...
T Consensus 108 ~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYDNQISCVM--PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCSSCCCEEC--TTSSTTCTTCCEEECTTC
T ss_pred ECCCCcCCeeC--HHHhhcCCCCCEEEeCCC
Confidence 99999988762 245778899999987653
No 279
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.11 E-value=1.7e-06 Score=96.36 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=57.4
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
+|+.++|+++.+..-. .+.++.=-.=+.|+|++|++..+. .++.+++|++|.|. .|.++.+....|..+|+|+.|.+
T Consensus 255 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccC-HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEEC
Confidence 6777777765443210 111111123456777777766663 45566677777777 66666665556666666666666
Q ss_pred cccccc-chhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIV-NLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~-~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++. .+ ...++.++++|++|.+..
T Consensus 333 ~~n~~~~~~--~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 333 KGNTKRLEL--GTGCLENLENLRELDLSH 359 (606)
T ss_dssp CSCSSCCBC--CSSTTTTCTTCCEEECCS
T ss_pred CCCCccccc--chhhhhccCcCCEEECCC
Confidence 666554 11 112355666666666544
No 280
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.11 E-value=0.0001 Score=84.46 Aligned_cols=149 Identities=10% Similarity=0.052 Sum_probs=99.7
Q ss_pred eEEEEcCCCCCEEEEEeCCCc--------------EEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEECC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE--------------VIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS 504 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt--------------VrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D 504 (606)
..++|+| | +.|+.++.|+. |++|++.++.. ...+....|...+.++.|+| ++.+++..+.+
T Consensus 212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~ 288 (741)
T 1yr2_A 212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSE 288 (741)
T ss_dssp CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEEC
T ss_pred ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEc
Confidence 4678999 7 88888887664 89999987653 23333334445689999999 56777766654
Q ss_pred C-----eEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCC--ceeEEE
Q 035500 505 G-----CVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTE--KPLQLF 572 (606)
Q Consensus 505 g-----tIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~--k~v~~l 572 (606)
+ .|.+||+.++.. .+...+. +...+... +.|+|+.|+..+.+ +.|.+||+.++ +....+
T Consensus 289 ~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~ 359 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKI--------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV 359 (741)
T ss_dssp TTCSCCEEEEEEEETTEE--------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE
T ss_pred cCCCcceEEEEECCCCCC--------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe
Confidence 3 899999876310 1123333 33344444 34888887777653 45999999875 334444
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+ .+...+..+.|+ +..++++...|+..+.
T Consensus 360 ~-~~~~~l~~~~~~--~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 360 P-ESKDNLESVGIA--GNRLFASYIHDAKSQV 388 (741)
T ss_dssp C-CCSSEEEEEEEE--BTEEEEEEEETTEEEE
T ss_pred c-CCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence 4 455667777776 5568899998987764
No 281
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.11 E-value=9.8e-06 Score=88.51 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=66.3
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+-+.|+|+.|.+......+.+++|++|.|. .|.|+......|..||+|+.|.+.+|++..+-.-..++.++++|++|.+
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECC-SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeE-CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 356788888887776655789999999999 8889886667789999999999999999876333355888999999987
Q ss_pred ceec
Q 035500 206 QMCL 209 (606)
Q Consensus 206 ~~~~ 209 (606)
..+.
T Consensus 382 s~N~ 385 (520)
T 2z7x_B 382 SQNS 385 (520)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7643
No 282
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.11 E-value=2.5e-06 Score=79.92 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=73.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. .....+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.+....|..+|+|+.|
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-ENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CCCccccCHHHhhCCcccCEE
Confidence 467888888876542 111112222345678888888887764 5778888888888 778888888888888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+|++..+-. ..+.++++|++|.++..
T Consensus 106 ~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQLKSVPD--GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred ECcCCcceEeCH--HHhcCCcccCEEEecCC
Confidence 888888876522 23566788888876654
No 283
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.10 E-value=5.6e-06 Score=85.20 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=63.3
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..- .+..| ..=+.|+|++|++..+.. .-+.+|++|.|. .|.|+.+....|..||+|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l----~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE-KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTC----TTCCEEECCSSCCSBCCS-SCCTTCCEEECC-SSCCCBBCHHHHTTCTTCCE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCC----CCCCEEECCCCcCCccCh-hhcccccEEECC-CCcccccCHhHhcCCccccE
Confidence 4577777776654421 12111 234567777777765542 124677777777 66777777667777777777
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.|.+|++........++.++++|++|.+..
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 7777777765444456667777777776544
No 284
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.09 E-value=0.00018 Score=73.90 Aligned_cols=148 Identities=10% Similarity=0.091 Sum_probs=100.0
Q ss_pred ceeEEEEcCCCCCEEEEEeC------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCE-EEEEECCCeEEEEe
Q 035500 439 RPRQFEYNPSNPSLMAFGTL------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK-LVAGSDSGCVRLFD 511 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~-LaSgS~DgtIklWD 511 (606)
++..++++| +++++++... .+.|..++ +++..... .+.....+++|+|+ ++. .++.+.++.|.+||
T Consensus 135 ~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 135 RSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---EEESSEEEEEECTT-SCEEEEEETTTCEEEEEE
T ss_pred CCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEE
Confidence 478899999 8887765542 24566666 45543322 22345789999984 454 45556788999999
Q ss_pred CC--CC-CCCcccccCCcceEEeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe-
Q 035500 512 LN--HI-PPKVADARGNSSVATYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS- 586 (606)
Q Consensus 512 l~--~~-~~~~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs- 586 (606)
+. .+ .. .....+..+.. ......+++.++|+++++...++.|..||. +++.+..+. .+...+++++|.
T Consensus 208 ~~~~~Gl~~-----~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g 280 (326)
T 2ghs_A 208 LDARTGLPT-----GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIG 280 (326)
T ss_dssp BCTTTCCBS-----SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEES
T ss_pred cccccCCcc-----cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEec
Confidence 86 32 11 00111222221 234678999999998888877789999998 577777777 466689999998
Q ss_pred CCCCeEEEEEeCCC
Q 035500 587 HHSPLCLLLLHLTT 600 (606)
Q Consensus 587 P~g~~LLaTgS~Dg 600 (606)
|++..+++++..++
T Consensus 281 ~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 281 PDASRLLVTSAREH 294 (326)
T ss_dssp TTSCEEEEEEBCTT
T ss_pred CCCCEEEEEecCCC
Confidence 88888888777664
No 285
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.09 E-value=0.00035 Score=68.63 Aligned_cols=146 Identities=3% Similarity=-0.051 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++++++ ++++.++...++.|.+||.. ++... +....+...+.++++.+ ++..+++...++.|..||... .
T Consensus 22 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g-~--- 93 (300)
T 2qc5_A 22 PYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKG-G--- 93 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTS-C---
T ss_pred cceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCCC-C---
Confidence 78899999 88888887788999999988 65543 33334446799999997 556677666688999998773 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE-EEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ-LFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~-~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....... ....+.++++.+++.++++...++.|..||.. ++... .+. .....++.+++.|++. ++++..
T Consensus 94 ------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~d~~g~-l~v~~~ 164 (300)
T 2qc5_A 94 ------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-NKGSYPAFITLGSDNA-LWFTEN 164 (300)
T ss_dssp ------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS-STTCCEEEEEECTTSS-EEEEET
T ss_pred ------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC-CCCCCceeEEECCCCC-EEEEec
Confidence 1111111 23458999999999988888778899999988 55442 223 2456789999999988 666666
Q ss_pred CCCeE
Q 035500 598 LTTMS 602 (606)
Q Consensus 598 ~DgtI 602 (606)
.++.|
T Consensus 165 ~~~~i 169 (300)
T 2qc5_A 165 QNNSI 169 (300)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 55544
No 286
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.09 E-value=3.4e-06 Score=90.38 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=94.6
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh--hccceEEEccCccccchHHHhhccCCC----ceeEEEccccchhc------
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQVGS----SCHVLILRATNIRK------ 139 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------ 139 (606)
.+..+|+. .|.+....+-.+-.++ +.+|+.+||+++.++...+..+++.=. .=+.|+|++|.|..
T Consensus 29 ~L~~L~L~---~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLD---DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEE---SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEcc---CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 45666664 4556666544444443 478999999999888776666654322 46789999999885
Q ss_pred cccccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhcee
Q 035500 140 LNMVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 140 l~~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~ 208 (606)
...++.+++|++|+|. .|.|+. +.+.++...++|+.|.+.+|++.... .-..++.++++|++|.+..|
T Consensus 106 ~~~l~~~~~L~~L~Ls-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLS-DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHTTSCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHccCCceeEEECC-CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3456788899999999 677764 34455667889999999999888643 12356777899999986654
No 287
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.08 E-value=3.2e-06 Score=86.99 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCccc--ccccccccCcccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLAS--LHEDCFSCMPYLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~--~~~~~~~~~p~l~ 175 (606)
.+|+.++|+++.+.. .-..++ -+=+.|+|++|+|..+.. ++.+.+|++|.|. .|.++. +....|..||+|+
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCEEECCCCcCCc-cChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcC
Confidence 589999999876652 111121 355779999998888764 6788899999998 777865 5566788889999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+.+|++..+...+ .++|++|.+..+
T Consensus 175 ~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n 202 (330)
T 1xku_A 175 YIRIADTNITTIPQGL-----PPSLTELHLDGN 202 (330)
T ss_dssp EEECCSSCCCSCCSSC-----CTTCSEEECTTS
T ss_pred EEECCCCccccCCccc-----cccCCEEECCCC
Confidence 9999888887663322 267777776543
No 288
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.06 E-value=3.4e-05 Score=87.88 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=95.7
Q ss_pred eeEEEEcCCCCCEEEEE-----eCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCe--------
Q 035500 440 PRQFEYNPSNPSLMAFG-----TLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGC-------- 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSG-----s~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dgt-------- 506 (606)
+..++||| |++++|.+ +.+.+|++||+++|+.+.. ...+. ...+++|+ + +..|+.++.|..
T Consensus 131 l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~--k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 131 LDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDV--KFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEE--ESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCc--eeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 77789999 99998853 3346899999999986542 11111 12467899 4 567777777743
Q ss_pred -----EEEEeCCCCCCCcccccCCcceEEeecC----CCeEEEEEccCCCEEEE-EeC---CCcEEEEECCCCc-eeEEE
Q 035500 507 -----VRLFDLNHIPPKVADARGNSSVATYYDF----EQLTSVHVNSTDDQFLA-SGY---SKNVALYDINTEK-PLQLF 572 (606)
Q Consensus 507 -----IklWDl~~~~~~~~~l~~~~~i~t~~~~----~~V~sV~~sp~g~~LaS-gs~---Dg~I~IWDlrt~k-~v~~l 572 (606)
|++|++.+.. ......+... ..+.++.|+|+|++++. .+. ++.|.+||+.++. ....+
T Consensus 205 ~~~~~v~~~~lgt~~--------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQ--------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp CCCCEEEEEETTSCG--------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred CCCcEEEEEECCCCc--------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 9999987742 1223334332 23788999999986643 332 2589999998774 34555
Q ss_pred cCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 573 TDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 573 ~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
. .+....... |++++..+++.+..|
T Consensus 277 ~-~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 277 Q-GDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp E-CSSSSCEEE-EEEETTEEEEEECTT
T ss_pred e-CCCCceEEE-EeccCCEEEEEECCC
Confidence 5 456666555 677777777777655
No 289
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.05 E-value=0.00019 Score=76.61 Aligned_cols=149 Identities=9% Similarity=-0.015 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEE--eccCCCCCE-E-EEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYI--PSIGGTNSV-L-GLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~--~~~gH~~~V-~-~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+.+++++|.++ .|..+..+++|+.||..++...... ...++...- . +++|+|.++.++++-+.++.|+.|+....
T Consensus 221 p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 221 IGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp CCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred cEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 66788999545 5555777899999999877643220 012332222 3 99999965667777788899999987652
Q ss_pred CCCcccccCCcceEEeec----------------CCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCC--
Q 035500 516 PPKVADARGNSSVATYYD----------------FEQLTSVHVNSTDDQFLASG-YSKNVALYDINTEKPLQLFTDMH-- 576 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~----------------~~~V~sV~~sp~g~~LaSgs-~Dg~I~IWDlrt~k~v~~l~~gH-- 576 (606)
+..+.+ ......++++|+|+++++-+ .++.|+.||+.+++... +. ++
T Consensus 300 ------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~-g~~~ 365 (409)
T 3hrp_A 300 ------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VA-GQVD 365 (409)
T ss_dssp ------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EE-ECTT
T ss_pred ------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-Ee-CCCC
Confidence 111111 13378999999999888888 88999999987776433 32 22
Q ss_pred -------------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 577 -------------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 577 -------------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
-.....++++|++ .++++-..++.||.
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRK 405 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEE
Confidence 2458899999995 57888888888874
No 290
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.03 E-value=2.4e-06 Score=88.91 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=73.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+..-.-. -+..=..=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.++...|..+|+|+.|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEE
Confidence 5788888888765432111 1122234567888888888774 47778888888888 778888887778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+.. ...+.++++|++|.+..|
T Consensus 130 ~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 130 NLLGNPYKTLGE-TSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ECTTCCCSSSCS-SCSCTTCTTCCEEEEEES
T ss_pred ECCCCCCcccCc-hhhhccCCCCcEEECCCC
Confidence 888888775511 124677888888887664
No 291
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.02 E-value=0.00063 Score=66.81 Aligned_cols=147 Identities=4% Similarity=-0.095 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+++++ ++++.++...++.|..||.. ++.. .+........+.++++.+ ++.++++...++.|..||... .
T Consensus 64 ~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~--- 135 (300)
T 2qc5_A 64 VMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADG-T--- 135 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTS-C---
T ss_pred ceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCC-C---
Confidence 77889998 88888877778999999988 6553 333323446789999997 557777766688999998763 1
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
....... ....+.++++.++++++++...++.|..||. +++........+...+..+++++++. ++++...
T Consensus 136 ------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 207 (300)
T 2qc5_A 136 ------IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM 207 (300)
T ss_dssp ------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT
T ss_pred ------EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccC
Confidence 1111122 2345889999999998777777889999998 55544322113456789999999886 5666655
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
.+.|
T Consensus 208 ~~~i 211 (300)
T 2qc5_A 208 GNKI 211 (300)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 5443
No 292
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.02 E-value=0.00025 Score=71.47 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.....|+|.++.++++...+++|..||..++... .+ .....+.++++++ ++.+++ +. ++.|.+||..++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~-dG~l~v-~~-~~~l~~~d~~~g~~-- 85 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQ-SGGYVA-TI-GTKFCALNWKEQSA-- 85 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBT-TSSEEE-EE-TTEEEEEETTTTEE--
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECC-CCCEEE-EE-CCeEEEEECCCCcE--
Confidence 3356799966777888888999999999887653 23 2346799999998 455444 44 56899999876321
Q ss_pred ccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeCC---------CcEEEEECCC-CceeEEEcCCCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGYS---------KNVALYDINT-EKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~D---------g~I~IWDlrt-~k~v~~l~~gH~~~I~sV~fs 586 (606)
..+..... ...++++++.|+|+++++...+ ..-.+|.+.. ++...... +....+.++|+
T Consensus 86 ------~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~pngi~~s 157 (297)
T 3g4e_A 86 ------VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--QVDISNGLDWS 157 (297)
T ss_dssp ------EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--EESBEEEEEEC
T ss_pred ------EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--ccccccceEEc
Confidence 11111111 1237899999999977765322 2334554443 33333222 34567899999
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
|++..++++.+.++.|.
T Consensus 158 pdg~~lyv~~~~~~~i~ 174 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVD 174 (297)
T ss_dssp TTSCEEEEEEGGGTEEE
T ss_pred CCCCEEEEecCCCCcEE
Confidence 99998888888777664
No 293
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=4.1e-06 Score=80.32 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=68.3
Q ss_pred eEEEccCccccchHHH-hhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 103 RVVDLSNITLRNDNLL-DLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 103 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
++|+++++.+.. +- .+. -.-+.|+|++|+|..+. .++.+.+|++|.|. .|.|+.+..+-|..||+|+.|.|.
T Consensus 13 ~~l~~~~~~l~~--ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS--CCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc--CCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECC
Confidence 467777654331 11 121 24567888888888874 67778888888888 888888888888888888888888
Q ss_pred cccccchhhhhHHhhcCCchhhhhhce
Q 035500 181 ETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 181 ~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+|++..+- ..++..|++|+.|.+..
T Consensus 87 ~N~l~~i~--~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 87 YNRLRCIP--PRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SSCCCBCC--TTTTTTCTTCCEEECCS
T ss_pred CCccCEeC--HHHhCCCCCCCEEECCC
Confidence 88887662 13466677777666433
No 294
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.01 E-value=1.4e-05 Score=84.06 Aligned_cols=210 Identities=12% Similarity=0.085 Sum_probs=124.8
Q ss_pred CccceeeeccCCCcccchhHHHHHHHH--hhccceEEEccCccccchHHHhhccC---C---------CceeEEEccccc
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHA--IDQKLRVVDLSNITLRNDNLLDLCQV---G---------SSCHVLILRATN 136 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~ 136 (606)
..+..+|+. .+.+..+-+..+..+ -+.+|+.++|+++.++......+... - ..=+.|+|+.|+
T Consensus 94 ~~L~~L~Ls---~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 94 PKLHTVRLS---DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCCEEECC---SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CcccEEECC---CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567777773 344555433333222 35789999999988875444433321 0 244569999988
Q ss_pred hhcc--c----cccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccch--hhhhHHhhcCCchhhh
Q 035500 137 IRKL--N----MVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNL--WTTTAAISKLPYLMEL 203 (606)
Q Consensus 137 ~~~l--~----~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l--~~~~~~l~~~~~l~~l 203 (606)
|..- . .++.+++|++|+|. .|.|+. +.+..|..+|+|+.|.|.+|++..- -.-..++.++|+|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 8532 2 44567889999999 778872 3334678889999999999988532 1123467888899988
Q ss_pred hhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchhhhcccchhhhhccCCCCCCCcce----
Q 035500 204 RFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPKYLRTMNLMELSSCLSPNLNGHAE---- 279 (606)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 279 (606)
.++.|.- ++ .......+.+.. +.+..|..|++.+|++-.
T Consensus 250 ~L~~n~i---~~---------------------~~~~~l~~~l~~-------------~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 250 GLNDCLL---SA---------------------RGAAAVVDAFSK-------------LENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp ECTTCCC---CH---------------------HHHHHHHHHHHT-------------CSSCCCCEEECCSSCCBHHHHH
T ss_pred ECCCCCC---ch---------------------hhHHHHHHHHhh-------------ccCCCeEEEECcCCcCCHHHHH
Confidence 8766530 00 000000111100 113456666666666543
Q ss_pred -ecccccCCCCCCCCcccccccccc-hhhhhhhccCCCCcccchhhHHHHHhhCCCceecc
Q 035500 280 -MLDEVNDSNEFPGGAHKQDLMDAN-VKLKKYISHHPSPICFEKHYREYMIASLPQLEVLD 338 (606)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~l~~-v~L~~~l~~~~npi~~~~~YReyvI~~Lp~LkvLD 338 (606)
+.+.+. .+ -.|+ ++.+.+|++.....|.+.+...+|.++.++
T Consensus 293 ~l~~~l~----------------~~l~~L~-~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~ 336 (386)
T 2ca6_A 293 TLKTVID----------------EKMPDLL-FLELNGNRFSEEDDVVDEIREVFSTRGRGE 336 (386)
T ss_dssp HHHHHHH----------------HHCTTCC-EEECTTSBSCTTSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHH----------------hcCCCce-EEEccCCcCCcchhHHHHHHHHhhhcCcch
Confidence 222221 11 1344 777888888888888888888888776543
No 295
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.01 E-value=6.4e-06 Score=93.07 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=13.9
Q ss_pred cchhhhhccCCCCCCCcceeccc
Q 035500 261 MNLMELSSCLSPNLNGHAEMLDE 283 (606)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~ 283 (606)
|+-+..|+.|++.+|++-.+.+.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccccCcceeECCCCCCCcCCHh
Confidence 34455677777777766655444
No 296
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.00 E-value=1.3e-05 Score=89.87 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCCcccchhHHHHHHHHhhccceEEEccCccccchHHHh-hccCCCceeEEEccccchhccccccccccccEEecccCCC
Q 035500 81 KRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLD-LCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSS 159 (606)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~ 159 (606)
..+|....+-.-.+-.....+|+.++|+++.+.. +-. + +..-+.|+|++|+|..+. +.+.+|++|+|. .|.
T Consensus 40 ~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~ 111 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECLINQFSELQLNRLNLSS--LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDAC-DNR 111 (571)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECC-SSC
T ss_pred CCccccccchhhhccccccCCccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEcc-CCC
Confidence 4556554332222224445588899998876653 222 3 245677999999888877 678889999998 778
Q ss_pred cccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 160 LASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 160 ~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+.|+. |.. +|+.|.|.+|++..+ .. .+++|++|.+.++
T Consensus 112 l~~ip~--l~~--~L~~L~Ls~N~l~~l----p~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 112 LSTLPE--LPA--SLKHLDVDNNQLTML----PE--LPALLEYINADNN 150 (571)
T ss_dssp CSCCCC--CCT--TCCEEECCSSCCSCC----CC--CCTTCCEEECCSS
T ss_pred CCCcch--hhc--CCCEEECCCCcCCCC----CC--cCccccEEeCCCC
Confidence 888876 433 888888888888775 33 5778888876553
No 297
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.00 E-value=1.9e-05 Score=87.52 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=67.7
Q ss_pred ceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 126 SCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.-+.|+++.|.+..+...+.+.+|++|.|. .|.|+.....-|..+|+|+.|.+.+|++..+-.-..++.++++|++|.+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFT-QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECC-SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECC-CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 467788888888777766789999999999 8889986667789999999999999999876444456888999999987
Q ss_pred cee
Q 035500 206 QMC 208 (606)
Q Consensus 206 ~~~ 208 (606)
..+
T Consensus 411 ~~N 413 (562)
T 3a79_B 411 SLN 413 (562)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 298
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.00 E-value=4.5e-06 Score=75.78 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=79.9
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-cc-cccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-LN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+..- .-...=..=++|+|+.|+|.. +. .++.+++|++|+|. .|.|+.++. ..|..||+|+.
T Consensus 42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls-~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 42 EELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS-GNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT-TSCCCSHHHHGGGGGCTTCCE
T ss_pred CCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC-CCcCCChHHHHHHhhCCCCCE
Confidence 5799999999876543 222333356789999999998 55 34469999999999 888999853 56999999999
Q ss_pred EEcccccccchhhh-hHHhhcCCchhhhhhc
Q 035500 177 LSMCETRIVNLWTT-TAAISKLPYLMELRFQ 206 (606)
Q Consensus 177 l~~~~~~~~~l~~~-~~~l~~~~~l~~l~~~ 206 (606)
|.+.+|++..+-.. ...+..+|+|++|.++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999877321 1458889999988753
No 299
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.99 E-value=7e-06 Score=90.88 Aligned_cols=100 Identities=28% Similarity=0.317 Sum_probs=61.3
Q ss_pred cceEEEccCccccc---hHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc
Q 035500 101 KLRVVDLSNITLRN---DNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM 175 (606)
Q Consensus 101 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~ 175 (606)
.++++||+.|.+.. +.+..| -.=++|||++|+|..+. .++.+.+|++|+|. .|+|+.++.+.|..+++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l----~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC----TTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCC----CCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCC
Confidence 46777777754421 111211 12356777777777765 35667777777777 6667777777777777777
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.|.+.+|++..+-. .++.+|++|++|.+..
T Consensus 128 ~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 128 KLVAVETNLASLEN--FPIGHLKTLKELNVAH 157 (635)
T ss_dssp EEECTTSCCCCSTT--CCCTTCTTCCEEECCS
T ss_pred EEECCCCcCCCCCh--hhhhcCcccCeecccc
Confidence 77777777665511 2356667777776443
No 300
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.98 E-value=0.00043 Score=71.02 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
.....|+|..+.+++++..++.|..||..+++... +. +...+.+++|.|+ +.+++ ++.+ .|.+||..++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~---~~~~v~~i~~~~d-g~l~v-~~~~-gl~~~d~~~g~~-- 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA---LPFMGSALAKISD-SKQLI-ASDD-GLFLRDTATGVL-- 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE---CSSCEEEEEEEET-TEEEE-EETT-EEEEEETTTCCE--
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE---CCCcceEEEEeCC-CeEEE-EECC-CEEEEECCCCcE--
Confidence 34567999556677777788999999998776532 22 2457999999984 45554 4444 489999876321
Q ss_pred ccccCCcceEEeec---CCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 520 ADARGNSSVATYYD---FEQLTSVHVNSTDDQFLASGY------SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 520 ~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSgs~------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..+..... ...++++.++|+|+++++... .+.|..+| +++...... +....+.++|+|++.
T Consensus 122 ------~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 122 ------TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGT 191 (326)
T ss_dssp ------EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSC
T ss_pred ------EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCC
Confidence 01111111 124889999999997776542 24555666 454433222 335678999999999
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
.++++.+.++.|.
T Consensus 192 ~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 192 TGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEETTTCEEE
T ss_pred EEEEEECCCCEEE
Confidence 8777777666654
No 301
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.98 E-value=1.3e-05 Score=83.99 Aligned_cols=162 Identities=14% Similarity=0.195 Sum_probs=102.8
Q ss_pred eEEEeeccccCCCchhHHHHhhhcCcCccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhccC-
Q 035500 45 SILVYLDQLKNADIYPLIDVFTEMDSFDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQV- 123 (606)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 123 (606)
.+.+-=.++.+.....+.+++... ...++.+|+-+-.-.....+.....++....+|+.++|+++.++......+++.
T Consensus 55 ~L~Ls~N~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 55 SLNLSGNSLGFKNSDELVQILAAI-PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTS-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhcc-CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 455544566666666666665433 256777777433322233344444555555789999999998877766655432
Q ss_pred ---CCceeEEEccccchhccc------cccccc-cccEEecccCCCccccccc----ccccCc-cccEEEcccccccchh
Q 035500 124 ---GSSCHVLILRATNIRKLN------MVGRFM-HLNTLSLDFCSSLASLHED----CFSCMP-YLMCLSMCETRIVNLW 188 (606)
Q Consensus 124 ---~~~~~~~~~~~~~~~~l~------~~~~~~-~l~tl~l~~~~~~~~~~~~----~~~~~p-~l~~l~~~~~~~~~l~ 188 (606)
.-+=+.|+|++|+|.... .+..++ +|++|+|. .|.|+..... .+..+| +|+.|.|.+|+|...-
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 235577999999888432 223454 89999999 7788877542 345564 9999999999887611
Q ss_pred h--hhHHhhcC-Cchhhhhhcee
Q 035500 189 T--TTAAISKL-PYLMELRFQMC 208 (606)
Q Consensus 189 ~--~~~~l~~~-~~l~~l~~~~~ 208 (606)
. -..++.++ ++|++|.+..+
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHHhcCCCCceEEECcCC
Confidence 0 12345554 48888886654
No 302
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.97 E-value=7.9e-06 Score=90.93 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=69.2
Q ss_pred ccceEEEccCccccchH-HHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccc-cccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDN-LLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~ 176 (606)
.+|+.++|+++.+...- +..-...-..=+.|+|+.|.+..+. .++.+++|.+|.|. .|.++.+.. ..|..+|+|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCE
Confidence 57888888887654210 0111112234466888888777765 55677788888888 677777655 56777888888
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|++.... -.++..+++|++|.+..|
T Consensus 429 L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 429 LDISYTNTKIDF--DGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EECTTSCCEECC--TTTTTTCTTCCEEECTTC
T ss_pred EECcCCCCCccc--hhhhcCCCCCCEEECCCC
Confidence 888888776532 234667777777776654
No 303
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.97 E-value=1.1e-05 Score=87.83 Aligned_cols=188 Identities=17% Similarity=0.159 Sum_probs=123.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+||.+||+++.+..- ..++ .=-.=+.|+|+.|+|..+. ++.+.+|++|+|. .|.|+.++ |..+|+|+.|.+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEEC
Confidence 5799999999766531 1221 1124567999999999997 8899999999999 88899984 899999999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhceecccCCCCCcccCCcccccCCCCCCcCCCchhhHHHhhccccCcccchh---
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMCLCCKDTGPCRASLDAKNQASGADDRVKDNEDQIVCKKFRDADEVELPK--- 256 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 256 (606)
.+|++..++ +.++++|++|.+..+. =++-. .+ .+.+.-+++.+.
T Consensus 114 ~~N~l~~l~-----~~~l~~L~~L~l~~N~---l~~l~---l~----------------------~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 114 DTNKLTKLD-----VSQNPLLTYLNCARNT---LTEID---VS----------------------HNTQLTELDCHLNKK 160 (457)
T ss_dssp CSSCCSCCC-----CTTCTTCCEEECTTSC---CSCCC---CT----------------------TCTTCCEEECTTCSC
T ss_pred CCCcCCeec-----CCCCCcCCEEECCCCc---cceec---cc----------------------cCCcCCEEECCCCCc
Confidence 999998872 8889999999876542 11110 00 111222223322
Q ss_pred --hhcccchhhhhccCCCCCCCcceecccccC-CCCCCCCcccccc-c--ccch-hhhhhhccCCCCcccchhhHHHHHh
Q 035500 257 --YLRTMNLMELSSCLSPNLNGHAEMLDEVND-SNEFPGGAHKQDL-M--DANV-KLKKYISHHPSPICFEKHYREYMIA 329 (606)
Q Consensus 257 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--l~~v-~L~~~l~~~~npi~~~~~YReyvI~ 329 (606)
.+ .+.-+..|..|++.+|++-.+. +.. +++....+..|.+ . ++.. .|+ ++.+..|.+...+ +.
T Consensus 161 ~~~~-~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~-~L~Ls~N~l~~ip------~~ 230 (457)
T 3bz5_A 161 ITKL-DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLT-FLDCSSNKLTEID------VT 230 (457)
T ss_dssp CCCC-CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCS-EEECCSSCCSCCC------CT
T ss_pred cccc-ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeeccccCCCCC-EEECcCCcccccC------cc
Confidence 11 3445667888888888776643 333 4444555555544 1 1111 455 6666777776643 45
Q ss_pred hCCCceecc
Q 035500 330 SLPQLEVLD 338 (606)
Q Consensus 330 ~Lp~LkvLD 338 (606)
.+++|+.|+
T Consensus 231 ~l~~L~~L~ 239 (457)
T 3bz5_A 231 PLTQLTYFD 239 (457)
T ss_dssp TCTTCSEEE
T ss_pred ccCCCCEEE
Confidence 667777665
No 304
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.95 E-value=1.9e-05 Score=87.84 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=41.8
Q ss_pred eEEEccccchhccc----cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 128 HVLILRATNIRKLN----MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 128 ~~~~~~~~~~~~l~----~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+.|+|+.|++..+. .++.+++|++|+|. .|.++.+....|..+|+|+.|.+.+|++... ....++..+++|++|
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLS-YNEPLSLKTEAFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVL 430 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECC-SCSCEEECTTTTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECC-CCcCCcCCHHHhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEE
Confidence 45555555555543 34455666666666 5555555555566666666666666655432 111224455556655
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+..
T Consensus 431 ~l~~ 434 (606)
T 3t6q_A 431 NLSH 434 (606)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 5544
No 305
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.94 E-value=6.9e-06 Score=84.40 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+..-....++..-..=++|+|+.|.|..+.....+++|++|.|+ .|.|+.+++. |..+|+|+.|.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC-CCcCCcchhh-hcccCcccEEEC
Confidence 46777777776655443334433223445677777777776655567777777777 6677777665 667777777777
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+- .++..+++|++|.+..+
T Consensus 222 ~~N~l~~l~---~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 222 RNNKLVLIE---KALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TTSCCCEEC---TTCCCCTTCCEEECTTC
T ss_pred cCCcccchh---hHhhcCCCCCEEEccCC
Confidence 777776552 23566677777765543
No 306
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.93 E-value=1.3e-05 Score=85.74 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=36.6
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|+.|++..+. .++.+++|++|+|. .|.|+.+....|..||+|+.|.|.+|++..+ ...++..+++|++|.+
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQNFLGSI--DSRMFENLDKLEVLDL 354 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CGGGGTTCTTCCEEEC
T ss_pred eEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCCccCCc--ChhHhcCcccCCEEEC
Confidence 34555555444432 24445555555555 4555555444555555555555555554332 1123444555555544
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
..
T Consensus 355 s~ 356 (455)
T 3v47_A 355 SY 356 (455)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 307
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.91 E-value=1.2e-05 Score=88.12 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=18.6
Q ss_pred Ccccchh-hhcccc-hhhhhccCCCCCCCcceecc
Q 035500 250 DEVELPK-YLRTMN-LMELSSCLSPNLNGHAEMLD 282 (606)
Q Consensus 250 ~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~ 282 (606)
.++|.+. ++.+++ .+..|+.|++.+|++-.|.+
T Consensus 434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred eEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 3444444 444333 45677777777777664443
No 308
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.90 E-value=8.5e-06 Score=95.17 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=42.1
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.|+|+.|.+..+. .++.+++|++|+|. .|.|+.+..+.|..+|+|+.|.+.+|++..+ ...++..+++|++|.+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLA-YNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEE-SCCCCEECTTTTTTCSSCCEEEEESCCCSCC--CSCSCSSCTTCCEEEC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECC-CCcCCCCChHHhcCCCCCCEEECCCCCCCcc--CHHHhcCCCCCCEEEC
Confidence 44555555555542 34555666666666 5556666555566666666666666655433 1124445555555554
Q ss_pred ce
Q 035500 206 QM 207 (606)
Q Consensus 206 ~~ 207 (606)
+.
T Consensus 346 ~~ 347 (844)
T 3j0a_A 346 QK 347 (844)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 309
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.89 E-value=1.1e-05 Score=86.26 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=87.4
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh---hccceEEEccCccccchHHHhhcc---CCCceeEEEccccchhccc----
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI---DQKLRVVDLSNITLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN---- 141 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~---- 141 (606)
.++.+|+-+ +.+.+.-+..+..++ ..+|+.++|+++.++...+..+.. .--.=+.|+|+.|+|....
T Consensus 171 ~L~~L~L~~---n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 171 DFKELTVSN---NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp TCCEEECCS---SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCCEEECcC---CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 566667633 446555555555544 458999999999888765444433 2344467999999887643
Q ss_pred ---cccccccccEEecccCCCccc-----ccccccccCccccEEEcccccccchhhhhHHhhc-----CCchhhhhhcee
Q 035500 142 ---MVGRFMHLNTLSLDFCSSLAS-----LHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISK-----LPYLMELRFQMC 208 (606)
Q Consensus 142 ---~~~~~~~l~tl~l~~~~~~~~-----~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~-----~~~l~~l~~~~~ 208 (606)
++..+++|++|+|. .|.|+. +.+ .+..+|+|+.|.+.+|++...- ..++.+ .++|++|.+..|
T Consensus 248 ~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIW-ECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHTSTTCCCCEEECT-TSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhcCCCCceEEECc-CCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCC
Confidence 22357899999999 668888 443 3667899999999999886431 122222 268888887765
Q ss_pred c
Q 035500 209 L 209 (606)
Q Consensus 209 ~ 209 (606)
.
T Consensus 324 ~ 324 (461)
T 1z7x_W 324 S 324 (461)
T ss_dssp C
T ss_pred C
Confidence 3
No 310
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.88 E-value=1.6e-05 Score=90.11 Aligned_cols=77 Identities=22% Similarity=0.156 Sum_probs=45.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|++++|++|.+.. +...=..=+.|+|++|+|..+.. .+.+|.+|+|. +|.|+.++.. +|+|+.|.+
T Consensus 81 ~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~-~N~l~~lp~~----l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-----LPVLPPGLLELSIFSNPLTHLPA--LPSGLCKLWIF-GNQLTSLPVL----PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSC-----CCCCCTTCCEEEECSCCCCCCCC--CCTTCCEEECC-SSCCSCCCCC----CTTCCEEEC
T ss_pred CCCCEEEcCCCcCCc-----CCCCCCCCCEEECcCCcCCCCCC--CCCCcCEEECC-CCCCCcCCCC----CCCCCEEEC
Confidence 567777777765432 11122234556777776666554 46666667666 5666666542 366777777
Q ss_pred ccccccchh
Q 035500 180 CETRIVNLW 188 (606)
Q Consensus 180 ~~~~~~~l~ 188 (606)
.+|++..+-
T Consensus 149 s~N~l~~l~ 157 (622)
T 3g06_A 149 SDNQLASLP 157 (622)
T ss_dssp CSSCCSCCC
T ss_pred cCCcCCCcC
Confidence 666666553
No 311
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.88 E-value=0.00018 Score=74.40 Aligned_cols=161 Identities=6% Similarity=-0.060 Sum_probs=99.9
Q ss_pred ceeEEEEcCCCCCEEEEEeC-----CCcEEEEECCCCceEEEEecc----CCCCCEEEEEEeeCCCCEEEEEE---CCCe
Q 035500 439 RPRQFEYNPSNPSLMAFGTL-----DGEVIVINHENGNVACYIPSI----GGTNSVLGLCWLKKYPSKLVAGS---DSGC 506 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~-----DGtVrIWDi~tg~~v~~~~~~----gH~~~V~~L~fsp~~~~~LaSgS---~Dgt 506 (606)
.+..++++| ++++.++-.. ++.|.+||..+++.+..+.+. .+...+.++++++.++..+++.+ .++.
T Consensus 68 ~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 68 TVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp CEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred EeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 378899999 7777666544 688999999999877666542 22345689999975545556666 7889
Q ss_pred EEEEeCCCCCCCcccccC-----C-cceEEeec---------------CCCeEEEEEccCCCEEEEEeCCC-cEEEEECC
Q 035500 507 VRLFDLNHIPPKVADARG-----N-SSVATYYD---------------FEQLTSVHVNSTDDQFLASGYSK-NVALYDIN 564 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~-----~-~~i~t~~~---------------~~~V~sV~~sp~g~~LaSgs~Dg-~I~IWDlr 564 (606)
|.+||..++.... .... . .......+ ...+..|+|+|+++.++.+..++ .+..+|..
T Consensus 147 i~v~d~~~g~~~r-~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 147 LIRVDLQTGLAAR-VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp EEEEETTTCCEEE-ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred EEEEECCCCCEEE-EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 9999987642110 0000 0 00000000 12368999999999888777665 44444432
Q ss_pred ---CCc-----e---eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 565 ---TEK-----P---LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 565 ---t~k-----~---v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+. . +... ++......++++++|. ++++...++.|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~-l~va~~~~~~V~~ 273 (343)
T 2qe8_A 226 DLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHN-IYVGDLAHSAIGV 273 (343)
T ss_dssp HHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCC-EEEEEGGGTEEEE
T ss_pred HhcCCCCChhhhhcceEec--ccCCCCceEEECCCCC-EEEEccCCCeEEE
Confidence 111 0 1111 2344566789999875 7778777777664
No 312
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=8.6e-06 Score=95.78 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=70.5
Q ss_pred ccceEEEccCcc-ccc----hHHHhhc---cCCCceeEEEccccchhcccc---ccccccccEEecccCCCccccccccc
Q 035500 100 QKLRVVDLSNIT-LRN----DNLLDLC---QVGSSCHVLILRATNIRKLNM---VGRFMHLNTLSLDFCSSLASLHEDCF 168 (606)
Q Consensus 100 ~~~~~~~l~~~~-~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~tl~l~~~~~~~~~~~~~~ 168 (606)
.+|+.++|++|. +.. +.+.+|. ..-.+=+.|+|++|++..+.. ++.+++|++|.|. .|.|+.|+ .|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls-~N~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECT-TSCCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECC-CCCcccch--hh
Confidence 367777777775 433 2233332 222245678888888887765 6778888888888 77788777 57
Q ss_pred ccCccccEEEcccccccchhhhhHHhhcCCc-hhhhhhceec
Q 035500 169 SCMPYLMCLSMCETRIVNLWTTTAAISKLPY-LMELRFQMCL 209 (606)
Q Consensus 169 ~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~-l~~l~~~~~~ 209 (606)
..||+|+.|.+.+|++..+. +.+.++++ |++|.+..|.
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSC
T ss_pred cCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCC
Confidence 88888888888888877442 34667777 7777776653
No 313
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.87 E-value=1.6e-05 Score=90.07 Aligned_cols=68 Identities=21% Similarity=0.105 Sum_probs=32.2
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
++|||++|+|..+.. .+.+|.+|+|. +|.|+.++. .+++|+.|.+.+|++..+-. .+++|++|.+..
T Consensus 84 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls-~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~ 150 (622)
T 3g06_A 84 RTLEVSGNQLTSLPV--LPPGLLELSIF-SNPLTHLPA----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSD 150 (622)
T ss_dssp CEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCCCCCC----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCS
T ss_pred CEEEcCCCcCCcCCC--CCCCCCEEECc-CCcCCCCCC----CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcC
Confidence 344555544444433 34445555554 444444433 34455555555554444321 135666666554
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
|
T Consensus 151 N 151 (622)
T 3g06_A 151 N 151 (622)
T ss_dssp S
T ss_pred C
Confidence 3
No 314
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.85 E-value=1.3e-05 Score=82.25 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccc-cccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASL-HEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~-~~~~~~~~p~l~~l 177 (606)
.-++.+||+++.+..+++..+...++ +.|+|++|.+.... .+..+++|++|+|. .+.++.. -...|..+|+|+.|
T Consensus 47 ~~~~~l~l~~~~~~~~~~~~~~~~~l--~~L~l~~n~l~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTGRLLSQGV--IAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCCHHHHHHHHHTTC--SEEECTTCEECSCCCSCCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCCHHHHHhhhhccc--eEEEcCCccccccchhhccCCCCCEEEcc-CCCcCHHHHHHHHhhCCCCCEE
Confidence 34777788777777666666654443 45777777765543 34466777788887 4556542 22446777788888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++... ...++.++++|++|.+..|
T Consensus 124 ~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRLSDP--IVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBCCHH--HHHHHTTCTTCSEEECTTC
T ss_pred eCcCcccCHH--HHHHHhcCCCCCEEECCCC
Confidence 8877766532 3356677777777776654
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.84 E-value=1.2e-05 Score=82.44 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=76.1
Q ss_pred hccceEEEccCccccc--hHHHhhccCCCceeEEEccccchhccc---cccccccccEEecccCCCcccccccccccCcc
Q 035500 99 DQKLRVVDLSNITLRN--DNLLDLCQVGSSCHVLILRATNIRKLN---MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
-.+|+.++|+++.+.. .....++..--.=+.|+|++|+|.... .+..+.+|++|+|. .|.|+.+++..| |+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls-~N~l~~ip~~~~---~~ 275 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS-FTGLKQVPKGLP---AK 275 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT-TSCCSSCCSSCC---SE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC-CCccChhhhhcc---CC
Confidence 3678888888887763 344455544445677999999888844 44456889999999 888998887655 89
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|+.|.+.+|++..+ .++.++++|++|.+.+
T Consensus 276 L~~L~Ls~N~l~~~----p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN----PSPDELPQVGNLSLKG 305 (312)
T ss_dssp EEEEECCSSCCCSC----CCTTTSCEEEEEECTT
T ss_pred ceEEECCCCCCCCC----hhHhhCCCCCEEeccC
Confidence 99999999988877 4477888888887654
No 316
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.83 E-value=0.00048 Score=71.08 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=96.0
Q ss_pred eeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeCCCCEEEEEEC-----CCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT--LDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKKYPSKLVAGSD-----SGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs--~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~~~~~LaSgS~-----DgtI 507 (606)
+..++++| +++++++.. .+|.++||.+.+++.. .+. ..+|-..+.+++++++ +.++++-+. ++.|
T Consensus 19 p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 19 PGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEE
T ss_pred cceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeE
Confidence 77889999 888988864 2453556655455543 221 1235578999999984 455444433 5789
Q ss_pred EEEeCCCCCCCcccccCCcceEEeec-------CCCeEEEEEccCCC-EEEEEe---CCCcEEEEECCCCceeEEEcCCC
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYD-------FEQLTSVHVNSTDD-QFLASG---YSKNVALYDINTEKPLQLFTDMH 576 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~-------~~~V~sV~~sp~g~-~LaSgs---~Dg~I~IWDlrt~k~v~~l~~gH 576 (606)
.+||..++ ..+.++.. ...+..++++|++. .+++.+ .++.|.+||+.+++..+.+. +|
T Consensus 96 ~~~d~~tg----------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~ 164 (343)
T 2qe8_A 96 VAWDTLNN----------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GY 164 (343)
T ss_dssp EEEETTTT----------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TC
T ss_pred EEEECCCC----------eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CC
Confidence 99999873 22333332 12368999998754 445555 67899999999887766554 22
Q ss_pred C-----------------------------CCeEEEEEeCCCCeEEEEEeCC
Q 035500 577 R-----------------------------EPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 577 ~-----------------------------~~I~sV~fsP~g~~LLaTgS~D 599 (606)
. ..++.++|+|++..++++....
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred CcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 1 2368899999998766655443
No 317
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.82 E-value=3.6e-05 Score=86.94 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred ccceEEEccCccccchHHHhhccCC---CceeEEEccccchhccc--cccccccccEEecccCCCcc-cccccccccCcc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVG---SSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLA-SLHEDCFSCMPY 173 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~-~~~~~~~~~~p~ 173 (606)
.+|+.++|+++.+....+.+....+ .+=+.|+|+.|++..+. .++.+.+|++|+|. .|.++ .++...|..+|+
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG-LNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCEEECCSGGGTTCTT
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC-CCcCccccCcccccCccc
Confidence 5788999888765433322222111 23466888888887763 45677788888888 66775 356667788888
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
|+.|.+.+|++..+ ...++..+|+|++|.+..|.
T Consensus 432 L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 432 IFEIYLSYNKYLQL--TRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp CCEEECCSCSEEEC--CTTTTTTCTTCCEEECTTSC
T ss_pred ccEEecCCCCccee--ChhhhhcCcccccchhcccc
Confidence 88888888877654 22455667777777776654
No 318
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.82 E-value=2.1e-05 Score=80.81 Aligned_cols=103 Identities=9% Similarity=0.164 Sum_probs=72.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhc-c-ccccccccccEEecccCCCcc-cccccccccCc-ccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRK-L-NMVGRFMHLNTLSLDFCSSLA-SLHEDCFSCMP-YLM 175 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~l~tl~l~~~~~~~-~~~~~~~~~~p-~l~ 175 (606)
.+|+.++|+++.+....-..+. .=-+=+.|+|++|+|.. + ..++.+++|++|+|+ .|.|+ .+++. |..++ +|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l~~~L~ 177 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSFSKLFT 177 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCCCTTCC
T ss_pred CCCCEEECcCCeeCCcCCHHHh-CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-HhhhhhcCc
Confidence 6899999999877632222221 12345789999999983 3 357889999999999 88888 55554 55565 999
Q ss_pred EEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 176 CLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 176 ~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.|.+.+|++... ...++.+++ |++|.+..+
T Consensus 178 ~L~L~~N~l~~~--~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 178 SMTISRNRLTGK--IPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEEEE--CCGGGGGCC-CSEEECCSS
T ss_pred EEECcCCeeecc--CChHHhCCc-ccEEECcCC
Confidence 999999998732 123455555 888876553
No 319
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.82 E-value=0.0035 Score=61.72 Aligned_cols=151 Identities=6% Similarity=-0.003 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|+|.++.+.++-..++.|.+++...+....... .......++++++.++..+++-...+.|.+++.....
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--- 112 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--- 112 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---
Confidence 66889999555555566668899999987655433222 2224688999998555556666677899999987521
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-C--CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-Y--SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~--Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...... .......++++|++..++.+. . .+.|..+++.... ...+....-...+.++++|++.+++++
T Consensus 113 -------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 113 -------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp -------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred -------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 111122 224478999999765444443 3 4688888886433 333321223567899999998888888
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
....+.|.
T Consensus 185 d~~~~~I~ 192 (267)
T 1npe_A 185 DAGTHRAE 192 (267)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 87777665
No 320
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.80 E-value=0.0014 Score=69.12 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEE-EeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACY-IPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~-~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++|+| +++++++++. +++|.++| .+++.+.. +...+ ++.+.|.....+++.+.||.+.+||. .++
T Consensus 127 p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 127 SWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred ccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 55788999 9999998874 58899999 99988776 54321 13444545566777778888888887 432
Q ss_pred CCcccc-----cCCcc----------------------eE-------------Eeec-----------CCCeEEEEEccC
Q 035500 517 PKVADA-----RGNSS----------------------VA-------------TYYD-----------FEQLTSVHVNST 545 (606)
Q Consensus 517 ~~~~~l-----~~~~~----------------------i~-------------t~~~-----------~~~V~sV~~sp~ 545 (606)
...... .+..+ +. .+.. ......+.++|+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 210000 00000 00 1100 011233678888
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe-CCCeEE
Q 035500 546 DDQFLASGY----------SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH-LTTMSR 603 (606)
Q Consensus 546 g~~LaSgs~----------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS-~DgtIR 603 (606)
++.++.+.. ++.|.++|..+++.+..++.+ ...+.++|+|+|++++.++. .++.|.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence 876666542 357999999999999888743 46889999999995455555 466654
No 321
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.76 E-value=4.6e-06 Score=87.85 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
++..+++|+.||.|+.||..+|+....+.. +.+.+..+.. ++..+++++.||.|..||..+++. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~----------~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG----------L 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CC----------S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEc-CCCEEEEeCCCCEEEEEECCCCce----------e
Confidence 567999999999999999999999987764 3444444444 445677788999999999977432 1
Q ss_pred EEeecCC--CeE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 529 ATYYDFE--QLT-SVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 529 ~t~~~~~--~V~-sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+..+. .+. +..+ ..+..+++++.|+.++.||.++|+.+..+. .+. ...++|.+. .+++++.|+.+++
T Consensus 73 w~~~~~~~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p~~~-~v~~~~~dg~v~a 144 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSPSTS-LLYLGRTEYTITM 144 (369)
T ss_dssp EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEEC
T ss_pred eeeeccCccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccccCC-EEEEEecCCEEEE
Confidence 1222110 010 0000 135577788889999999999999987776 332 234567666 4667777777764
No 322
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.76 E-value=0.00035 Score=74.62 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=83.6
Q ss_pred EcCCCCCEEEEEeC-----CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEE
Q 035500 445 YNPSNPSLMAFGTL-----DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRL 509 (606)
Q Consensus 445 fsP~dg~~LaSGs~-----DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIkl 509 (606)
..| +++.+..... +++|.+.|..+++.+..+.. |. .+ .++++|+ +.+++.++ .++.|.+
T Consensus 40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~-~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GF-LP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CC-CC--cEEECCC-CCEEEEEcccccccccCCCCCEEEE
Confidence 346 7777777765 68999999999999988763 32 33 3999995 55554443 4678999
Q ss_pred EeCCCCCCCcccccCCcceEEeecC--------CCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEEEcC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYDF--------EQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~~--------~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~l~~ 574 (606)
||..+. ..+.++.-. ..-..+.++|+|++++.+.. ++.|.++|+.+++.+.+++.
T Consensus 114 iD~~t~----------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 114 FDPVTL----------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp ECTTTC----------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred EECCCC----------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 999884 344444311 13457899999998887763 68999999999999888863
No 323
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.75 E-value=0.00068 Score=68.44 Aligned_cols=141 Identities=9% Similarity=-0.005 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+....|+| +++ +++++..++.|..|+. ++.. ..+. .+...+.+++|++ ++.++++...++.|..||... ..
T Consensus 47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~--~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~g-~~- 118 (305)
T 3dr2_A 47 SEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL--DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDADG-QA- 118 (305)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE--ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CE-
T ss_pred ccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe--CCCCccceeeECC-CCCEEEEECCCCEEEEECCCC-CE-
Confidence 45667999 777 7778888999999998 4543 2332 3456789999998 556555555568899998753 11
Q ss_pred cccccCCcceE-Eeec--CCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEECCCCceeEEEcCCCCC
Q 035500 519 VADARGNSSVA-TYYD--FEQLTSVHVNSTDDQFLA----SGY-------------SKNVALYDINTEKPLQLFTDMHRE 578 (606)
Q Consensus 519 ~~~l~~~~~i~-t~~~--~~~V~sV~~sp~g~~LaS----gs~-------------Dg~I~IWDlrt~k~v~~l~~gH~~ 578 (606)
..+. .... ...++++++.|+|.+++| |.. .+.|..||..+++..... +..
T Consensus 119 -------~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~ 188 (305)
T 3dr2_A 119 -------HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD 188 (305)
T ss_dssp -------EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES
T ss_pred -------EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC
Confidence 0111 1111 234678999999998886 332 256888888777654332 234
Q ss_pred CeEEEEEeCCCCeEEEEEeC
Q 035500 579 PINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+.++|+|++..++++.+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp SEEEEEECTTSSEEEEEECC
T ss_pred CCcceEEcCCCCEEEEEecC
Confidence 56889999999977666554
No 324
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.74 E-value=3e-05 Score=86.25 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=66.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||+++|+++.+..--- .-+..=-.=++|||++|.|..+. .++.+.+|++|+|. .|+|+.+..+.|..+++|+.|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEE
Confidence 567777777765432110 01111123356777777777763 46677777788887 667777766777777888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+... ++.+|++|++|.+..|
T Consensus 110 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 110 VAVETKLASLESF--PIGQLITLKKLNVAHN 138 (606)
T ss_dssp ECTTSCCCCSSSS--CCTTCTTCCEEECCSS
T ss_pred EccCCcccccccc--ccCCCCCCCEEeCCCC
Confidence 8877777665321 3667777777775553
No 325
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.74 E-value=0.0013 Score=69.42 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCEEEEEeC--CC---cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCC
Q 035500 449 NPSLMAFGTL--DG---EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLN 513 (606)
Q Consensus 449 dg~~LaSGs~--DG---tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~ 513 (606)
++.++.+... .. +|.+||..+++.+..++. + ..+ .++++| +++.++.+. .+++|.+||..
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g-~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-G-FLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-C-CCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 6666666543 22 899999999998876653 2 233 999999 556666664 47889999998
Q ss_pred CCCCCcccccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCeEE
Q 035500 514 HIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQL-FTDMHREPINV 582 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~-l~~gH~~~I~s 582 (606)
+.+ .+..... ...-..+.|+|+|++++.+.. ++.|.++| .+++.+.. ++. ...
T Consensus 106 t~~----------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~~--- 169 (373)
T 2mad_H 106 TFL----------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PTC--- 169 (373)
T ss_pred CCc----------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cce---
Confidence 632 2222221 122457899999998888764 58899999 99998877 662 121
Q ss_pred EEEeCCCCeEEEEEeCCCe
Q 035500 583 AKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 583 V~fsP~g~~LLaTgS~Dgt 601 (606)
+.+.|.++..+++.+.|+.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~ 188 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EEEEeCCCceEEEEcCCCC
Confidence 3445555545555555554
No 326
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.73 E-value=4.2e-05 Score=71.44 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=69.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+.. ...+.+..-..=+.|+|++|+|..+.. ++.+.+|++|.|. .|.|+.++.+.|..||+|+.|
T Consensus 52 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD-TNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEE
T ss_pred ccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc-CCcceEeCHHHhcCCcccCEE
Confidence 589999999987652 111222222345789999999998874 6789999999999 889999999999999999999
Q ss_pred Ecccccccch
Q 035500 178 SMCETRIVNL 187 (606)
Q Consensus 178 ~~~~~~~~~l 187 (606)
.|.+|.+.--
T Consensus 130 ~l~~N~~~~~ 139 (177)
T 2o6r_A 130 WLHTNPWDCS 139 (177)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCCeecc
Confidence 9999987743
No 327
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.73 E-value=3.6e-05 Score=79.04 Aligned_cols=101 Identities=11% Similarity=0.175 Sum_probs=74.3
Q ss_pred ccceEEEccCccccch---HHHhhccCCCceeEEEccccchh-ccc-cccccc-cccEEecccCCCcccccccccccCcc
Q 035500 100 QKLRVVDLSNITLRND---NLLDLCQVGSSCHVLILRATNIR-KLN-MVGRFM-HLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~-~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
.+|+.++|+++.+... .+..| -+=++|+|+.|+|. .+. .++.+. +|++|.|. .|.++......|..++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN- 198 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGC----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-
T ss_pred CCCCEEeCCCCccCCcCChHHhcC----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-
Confidence 6899999999877632 23332 34567999999887 443 566776 89999999 8888866666677777
Q ss_pred ccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 174 LMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 174 l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+.|.+.+|++... ....+.++++|++|.+..+
T Consensus 199 L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSS
T ss_pred ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCC
Confidence 99999999888754 2355778888888886664
No 328
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.73 E-value=4.7e-05 Score=87.95 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=47.3
Q ss_pred eEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 128 HVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
+.|+|+.|++....-++.+++|++|+|. .|.++..... |..+|+|+.|.+.+|++... ...++.++++|++|.+..
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVS-SNNFSTGIPF-LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNISS 256 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECC-SSCCCSCCCB-CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECCS
T ss_pred CEEECCCCcccccCCcccCCcCCEEECc-CCcCCCCCcc-cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECCC
Confidence 4455555555554445566777777777 5555554433 67777777777777766532 234566777777777665
Q ss_pred e
Q 035500 208 C 208 (606)
Q Consensus 208 ~ 208 (606)
|
T Consensus 257 n 257 (768)
T 3rgz_A 257 N 257 (768)
T ss_dssp S
T ss_pred C
Confidence 4
No 329
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=2.6e-05 Score=87.43 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=82.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcc-ccccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKL-NMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
..|++++|++|.+.. +.+++ .=..=+.|+|++|+|..+ ..++.+.+|++|+|+ +|.|+.++ -|..||+|+.|.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD--GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG--GGTTCSSCCEEE
T ss_pred cCceEEEecCCCCCC--CcCcc-ccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc--ccCCCCCCcEEE
Confidence 369999999986643 22211 112347799999999988 478899999999999 89999997 499999999999
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhceecc
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMCLC 210 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~~ 210 (606)
|.+|++..+- ....+.+|++|+.|.+.++.-
T Consensus 515 Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 515 LCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCSSCCCSSS-TTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCC-CcHHHhcCCCCCEEEecCCcC
Confidence 9999998761 135678899999999887654
No 330
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.72 E-value=2.9e-05 Score=85.30 Aligned_cols=105 Identities=27% Similarity=0.219 Sum_probs=70.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..+|.+||+++.+..-.-. -+..=-+=++|||++|+|..+. .++.+.+|++|+|. .|.|+.++.+.|..+++|+.|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCccccccc
Confidence 3577788877654321100 1111123467888888887775 46778888888888 777888887788888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+-.. ++.+|++|++|.+..+
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHN 134 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSS
T ss_pred cccccccccCCCc--cccccccccEEecCCC
Confidence 8888887776221 2677788888776553
No 331
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.72 E-value=2e-05 Score=87.27 Aligned_cols=105 Identities=16% Similarity=0.240 Sum_probs=71.6
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|++++|+++.+...+..+.++.--+=++|||++|+|..+. .++.+++|++|+|. +|+|++++...|..+|+|+.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS-HNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC-CCcCCCCChhHHhCCCCCCEE
Confidence 466777777765544444444444445577888888887774 46677888888888 778888877778888888888
Q ss_pred EcccccccchhhhhHHhhcC-Cchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKL-PYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~-~~l~~l~~~~ 207 (606)
.+.+|++..+- -.++..+ ++|+.|.+..
T Consensus 548 ~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 548 DYSLNHIMTSK--KQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ECTTSCCCBCC--SSCTTCCCTTCCEEECTT
T ss_pred ECCCCcCCCCC--HHHHHhhhCcCCEEEeeC
Confidence 88888776552 2345566 4677776554
No 332
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.72 E-value=1.8e-05 Score=86.81 Aligned_cols=105 Identities=24% Similarity=0.272 Sum_probs=54.8
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||++||+++.+..-.-..+ ..=-.=++|+|++|+|..+. .++.+.+|++|+|. .|.|+.+....|..|++|+.|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTT-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhh-hcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCCcEE
Confidence 456666666654432110111 11112345666666666554 35556666666666 556666665556666666666
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+- ....+.++++|++|.+..
T Consensus 104 ~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 104 NLMGNPYQTLG-VTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp ECTTCCCSSSC-SSCSCTTCTTCCEEEEEE
T ss_pred ECCCCcccccc-hhhhhhccCCccEEECCC
Confidence 66666655331 112345556666665444
No 333
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.70 E-value=6.5e-05 Score=81.55 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=47.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|++++|+++.+.. +-++ ..=-+=+.|+|++|++..+... +.+|++|.|. .|.++.+++ |..||+|+.|.+
T Consensus 131 ~~L~~L~L~~n~l~~--lp~~-~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPEL-QNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC--Cccc-CCCCCCCEEECCCCcCcccCCC--cccccEEECc-CCcCCcCcc--ccCCCCCCEEEC
Confidence 578888888766543 2221 1112345677777766654422 3467777776 556666653 666666666666
Q ss_pred ccccccch
Q 035500 180 CETRIVNL 187 (606)
Q Consensus 180 ~~~~~~~l 187 (606)
.+|++..+
T Consensus 203 ~~N~l~~l 210 (454)
T 1jl5_A 203 DNNSLKKL 210 (454)
T ss_dssp CSSCCSSC
T ss_pred CCCcCCcC
Confidence 66666543
No 334
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.70 E-value=3.1e-05 Score=86.86 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|++|.+.. +- ..-..-+.|+|++|+|..+..++. +|.+|+|+ +|.|+.|+. .+|+|+.|.|
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls-~N~l~~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVD-NNQLTMLPE----LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECC-CCcCCCCCC----cCccccEEeC
Confidence 568888888876652 21 112345678888888877655333 88888888 778888776 5788888888
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .. .+++|++|.+.++
T Consensus 148 s~N~l~~l----p~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 148 DNNQLTML----PE--LPTSLEVLSVRNN 170 (571)
T ss_dssp CSSCCSCC----CC--CCTTCCEEECCSS
T ss_pred CCCccCcC----CC--cCCCcCEEECCCC
Confidence 88887765 22 5677887776654
No 335
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.69 E-value=2.9e-05 Score=85.11 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|++|.+.......++..=..=+.|+|++|.|..+.....+++|.+|+|+ +|.|+.++.+ |..+|+|+.|.|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC-SSCCCEECGG-GGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC-CCCCCCCCHh-HcCCCCccEEEe
Confidence 34555555555444322222222112334455555555555444445555555555 5555555544 555555555555
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhce
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+|++..+-. .+..+++|+.|.+..
T Consensus 222 s~N~l~~lp~---~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 222 RNNKLVLIEK---ALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTSCCCEECT---TCCCCTTCCEEECTT
T ss_pred cCCcCcccch---hhccCCCCCEEEcCC
Confidence 5555554321 234445555555443
No 336
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=5.9e-05 Score=88.68 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=65.8
Q ss_pred cceEEEccCccccchHHHhhc-----cCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCc-
Q 035500 101 KLRVVDLSNITLRNDNLLDLC-----QVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMP- 172 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p- 172 (606)
+|+.++|++|.+... +..+. ..+.+=+.|+|+.|+|..+.. +..+++|++|+|. +|.|+.++...|...+
T Consensus 645 ~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls-~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS-NNLMTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC-SCCCSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC-CCcCCccChHHhccccc
Confidence 488888888766431 11111 122345678888887776652 2356778888887 6777777777776543
Q ss_pred ------cccEEEcccccccchhhhhHHhh--cCCchhhhhhcee
Q 035500 173 ------YLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQMC 208 (606)
Q Consensus 173 ------~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~~ 208 (606)
+|+.|.|.+|++..+- ..+. .+|+|++|.+..+
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~lp---~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSLS---DDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCCC---GGGSTTTCTTCCEEECCSS
T ss_pred cccccCCccEEECCCCCCccch---HHhhhccCCCcCEEEeCCC
Confidence 7888888877777552 2343 6777777776664
No 337
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.64 E-value=6e-05 Score=85.25 Aligned_cols=103 Identities=7% Similarity=0.168 Sum_probs=59.0
Q ss_pred ceEEEccCccccchHHHhhc-cCCC-ceeEEEccccchhcc--cccc-------ccccccEEecccCCCccccccccccc
Q 035500 102 LRVVDLSNITLRNDNLLDLC-QVGS-SCHVLILRATNIRKL--NMVG-------RFMHLNTLSLDFCSSLASLHEDCFSC 170 (606)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l--~~~~-------~~~~l~tl~l~~~~~~~~~~~~~~~~ 170 (606)
|+.++|+++.+. . +-+.. ...+ +=+.|+|++|+|... ..++ .+.+|++|.|. .|.|+.++...|..
T Consensus 379 L~~L~Ls~N~l~-~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 379 VENLSFAHNKLK-Y-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFST 455 (636)
T ss_dssp CCEEECCSSCCS-S-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHT
T ss_pred CcEEEccCCcCc-c-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHcc
Confidence 777777776665 2 22211 1111 346677777777653 2233 45577777777 66777777776777
Q ss_pred CccccEEEcccccccchhhhhHH-----hhcCCchhhhhhce
Q 035500 171 MPYLMCLSMCETRIVNLWTTTAA-----ISKLPYLMELRFQM 207 (606)
Q Consensus 171 ~p~l~~l~~~~~~~~~l~~~~~~-----l~~~~~l~~l~~~~ 207 (606)
||+|+.|.|.+|++..+-..+-. +.++++|++|.+..
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 77777777777777654322211 12233666666544
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.63 E-value=8e-05 Score=76.23 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=50.7
Q ss_pred hccceEEEccCc-cccchHHHhhccCCCceeEEEcccc-chhcc---ccccccc-cccEEecccCC-Ccc--cccccccc
Q 035500 99 DQKLRVVDLSNI-TLRNDNLLDLCQVGSSCHVLILRAT-NIRKL---NMVGRFM-HLNTLSLDFCS-SLA--SLHEDCFS 169 (606)
Q Consensus 99 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~-~l~tl~l~~~~-~~~--~~~~~~~~ 169 (606)
..+|+.++|+++ .++...+..+...=.+=+.|+|++| .+... ..++.++ +|++|.|..|. .++ .++ ..+.
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~ 219 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVR 219 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHh
Confidence 355666666665 3443333333332233445666655 54431 2344555 56666665332 232 222 2344
Q ss_pred cCccccEEEccccc-ccchhhhhHHhhcCCchhhhhhceec
Q 035500 170 CMPYLMCLSMCETR-IVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 170 ~~p~l~~l~~~~~~-~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
.+|+|+.|.+.+|+ +.+ ....++.++++|++|.+..|.
T Consensus 220 ~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT
T ss_pred hCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC
Confidence 55566666665555 332 122445555555555555543
No 339
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.63 E-value=4.5e-05 Score=88.08 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchh-ccc-ccc-ccccccEEecccCCCcccccccccccCccccE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIR-KLN-MVG-RFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~-~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
.+|++++|+++.+.... -...- -+=+.|+|+.|++. .+. .++ .+++|++|.|. .|.++.....-|..+|+|+.
T Consensus 247 ~~L~~L~Ls~n~l~~~~-~~~~l--~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPI-PPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp SSCCEEECCSSCCEESC-CCCCC--TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC-SSEEEECCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccCcc-Ccccc--CCCCEEECcCCccCCccCHHHHhhcCcCCEEECc-CCcCCCccchHHhcCCCccE
Confidence 57888888887653211 00001 12245666666654 221 122 23566666666 55555544455666666666
Q ss_pred EEccccccc-chhhhhHHhhcCCchhhhhhcee
Q 035500 177 LSMCETRIV-NLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 177 l~~~~~~~~-~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+.+|++. .+ ...++.++++|++|.+..|
T Consensus 323 L~L~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 323 LALSSNNFSGEL--PMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEEEC--CHHHHTTCTTCCEEECCSS
T ss_pred EECCCCcccCcC--CHHHHhcCCCCCEEeCcCC
Confidence 666666554 22 1123555666666655543
No 340
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.63 E-value=3.6e-05 Score=82.29 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=55.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|+++.+....-.. ...=-+=+.|+|++|+|..+. .++.+.+|++|+|. .|.|+.+....|..||+|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECC-CCccCCcChhHhcCcccCCEE
Confidence 56777777766554221111 111112345666666666553 44555666666666 556666655556666666666
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.+.+|++..+- ..++..+++|++|.+..
T Consensus 353 ~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 353 DLSYNHIRALG--DQSFLGLPNLKELALDT 380 (455)
T ss_dssp ECCSSCCCEEC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcccccC--hhhccccccccEEECCC
Confidence 66666654431 13445555666665554
No 341
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.62 E-value=7.5e-05 Score=70.24 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=71.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
..|++++|++|.+..-. .+.+..=-.=+.|+|++|+|..+.. ++.+.+|++|+|. .|.|+.++.+.|..||+|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CCccceeCHHHhccccCCCEE
Confidence 57899999998765321 1112222345779999999999874 6789999999999 899999999999999999999
Q ss_pred EcccccccchhhhhHH
Q 035500 178 SMCETRIVNLWTTTAA 193 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~ 193 (606)
.|.+|.+.-....+..
T Consensus 111 ~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 111 YLYNNPWDCECRDIMY 126 (174)
T ss_dssp ECCSSCBCTTBGGGHH
T ss_pred EeCCCCcccccccHHH
Confidence 9999987754333333
No 342
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.62 E-value=0.00052 Score=69.30 Aligned_cols=146 Identities=9% Similarity=0.033 Sum_probs=96.1
Q ss_pred ceeEEEEcCCCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAF----GTL-------------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG 501 (606)
Q Consensus 439 rV~slafsP~dg~~LaS----Gs~-------------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg 501 (606)
.+..++++| +|++.++ |.. .+.|..||..+++..... +.....+++|+| ++..|+.+
T Consensus 132 ~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~sp-dg~~lyv~ 205 (305)
T 3dr2_A 132 SPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSP-DEQTLYVS 205 (305)
T ss_dssp CCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESSEEEEEECT-TSSEEEEE
T ss_pred CCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCCCcceEEcC-CCCEEEEE
Confidence 366789999 8988886 432 356888888777654432 233578999999 55666655
Q ss_pred ECC------CeEEEEeCCCCCCCcccccCCcceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 502 SDS------GCVRLFDLNHIPPKVADARGNSSVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 502 S~D------gtIklWDl~~~~~~~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
... +.|..||+.... + .....+. .......+++.++|+++++. .+ .|.+||. .++.+..+.
T Consensus 206 ~~~~~~~~~~~i~~~~~~~~~-----l---~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~ 274 (305)
T 3dr2_A 206 QTPEQGHGSVEITAFAWRDGA-----L---HDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIP 274 (305)
T ss_dssp ECCC---CCCEEEEEEEETTE-----E---EEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEE
T ss_pred ecCCcCCCCCEEEEEEecCCC-----c---cCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEE
Confidence 544 789999987531 0 0011111 12335678899999966555 44 4999998 577777776
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. +. .+..++|.|++..++++++ ++..+.
T Consensus 275 ~-~~-~~~~~~f~~d~~~L~it~~-~~l~~~ 302 (305)
T 3dr2_A 275 T-PG-TASNCTFDQAQQRLFITGG-PCLWML 302 (305)
T ss_dssp C-SS-CCCEEEECTTSCEEEEEET-TEEEEE
T ss_pred C-CC-ceeEEEEeCCCCEEEEEcC-CeEEEE
Confidence 3 33 6889999999887766654 666554
No 343
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.61 E-value=0.00059 Score=78.01 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=92.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCC--------------------------CC-----------CEEEEEEeeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGG--------------------------TN-----------SVLGLCWLKKY 494 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH--------------------------~~-----------~V~~L~fsp~~ 494 (606)
.++.++.+|.++++|..+|+.+...++... .. .-..++++|.
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~- 399 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD- 399 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-
Confidence 788999999999999999998754432110 00 0012677774
Q ss_pred CCEEEEEEC---------------------------------------------CCeEEEEeCCCCCCCcccccCCcceE
Q 035500 495 PSKLVAGSD---------------------------------------------SGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 495 ~~~LaSgS~---------------------------------------------DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
..+++..+. +|+|..||+.++ +.+-
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG----------~~~W 469 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ----------QAAW 469 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT----------EEEE
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC----------CeEe
Confidence 456665532 367888888774 2222
Q ss_pred EeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 530 TYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.+..+.++..-.+...+.+++.|+.|+.++.||.++|+.+..++.++.....-+.|..+|+..+++.+.
T Consensus 470 ~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 470 EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 333444444445566788999999999999999999999998885544444567888888866665554
No 344
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.61 E-value=7.1e-05 Score=84.65 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=72.9
Q ss_pred cceEEEccCccccchHHHhhc---c---CCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCc
Q 035500 101 KLRVVDLSNITLRNDNLLDLC---Q---VGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMP 172 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p 172 (606)
+|+.++|+++.+....-..+. . ...+=+.|+|+.|+|..+.. +..+++|++|.|. .|.|+.++...|..++
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls-~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM-GNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC-SSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC-CCCCCCcCHHHhcccc
Confidence 688888888776543222222 1 23356778888888886653 3357888888888 7888888887777665
Q ss_pred -------cccEEEcccccccchhhhhHHhh--cCCchhhhhhcee
Q 035500 173 -------YLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQMC 208 (606)
Q Consensus 173 -------~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~~ 208 (606)
+|+.|.|.+|++..+. ..+. .+++|++|.+..+
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLS---DDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCC---GGGSTTTCTTCCEEECCSS
T ss_pred ccccccCCccEEECcCCcCCccC---hhhhhccCCCcCEEECCCC
Confidence 8888888888888553 3344 7788888887764
No 345
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.61 E-value=9.9e-05 Score=80.13 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=74.7
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccccccccCccccEEEc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSM 179 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~ 179 (606)
.+|+.++|+++.+.. +...--+-++|+|++|++..+..++.+.+|++|.|. .|.++.++. .+++|+.|.+
T Consensus 111 ~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~----~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPD----LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCC----CCTTCCEEEC
T ss_pred CCCcEEECCCCccCc-----ccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCC----CcccccEEEC
Confidence 689999998875542 211113567899999999988878889999999999 778888864 3579999999
Q ss_pred ccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 180 CETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 180 ~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+|++..+ .++.++++|++|.+..|
T Consensus 181 ~~n~l~~l----~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 181 GNNQLEEL----PELQNLPFLTAIYADNN 205 (454)
T ss_dssp CSSCCSSC----CCCTTCTTCCEEECCSS
T ss_pred cCCcCCcC----ccccCCCCCCEEECCCC
Confidence 99988876 46888999999987764
No 346
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.58 E-value=0.00053 Score=78.27 Aligned_cols=136 Identities=7% Similarity=0.043 Sum_probs=94.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCC---------CCE------------------------EEEEEeeCCCCE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGT---------NSV------------------------LGLCWLKKYPSK 497 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~---------~~V------------------------~~L~fsp~~~~~ 497 (606)
..++.++.+|.|+++|..+|+.+..++..... ..+ ..++++|+ ..+
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~ 406 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGL 406 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTE
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCE
Confidence 68999999999999999999998766532110 001 14677874 456
Q ss_pred EEEEECC-------------------------------------------CeEEEEeCCCCCCCcccccCCcceEEeecC
Q 035500 498 LVAGSDS-------------------------------------------GCVRLFDLNHIPPKVADARGNSSVATYYDF 534 (606)
Q Consensus 498 LaSgS~D-------------------------------------------gtIklWDl~~~~~~~~~l~~~~~i~t~~~~ 534 (606)
++..+.+ |.|..||..++ +.+-.+.+.
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG----------~~~W~~~~~ 476 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ----------KAAWSVEHV 476 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT----------EEEEEEEES
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC----------cEEeecCCC
Confidence 6665432 67888888774 222233344
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 535 EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 535 ~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.++.+..+...+.+++.++.|+.++.||.++++.+..+..++.....-+.|.++|+..++..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~ 539 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEec
Confidence 445555566778888999999999999999999999998655555556777788876555543
No 347
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.55 E-value=0.0064 Score=61.56 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL--DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~--DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
...++|+| ++.+.++.+. ++.|+++|..+++.+..+....+ ....++++. +....++.-.++.+.++|..+.
T Consensus 23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-- 96 (266)
T 2iwa_A 23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-- 96 (266)
T ss_dssp EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence 46788998 6655544443 68999999999999987765332 234466665 3344555557889999999873
Q ss_pred CcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----CCeEEEEEeCCCCeE
Q 035500 518 KVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHR----EPINVAKFSHHSPLC 592 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~----~~I~sV~fsP~g~~L 592 (606)
..+.++... ..- ..+.+++..++.+..+++|.++|..+.+.+..++-+-. ..++.+.|. ++ .+
T Consensus 97 --------~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l 164 (266)
T 2iwa_A 97 --------SNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV 164 (266)
T ss_dssp --------EEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EE
T ss_pred --------cEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EE
Confidence 345555433 222 33456777666666789999999999988777763211 246788888 55 57
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
+++...+..|
T Consensus 165 yvn~~~~~~V 174 (266)
T 2iwa_A 165 WANIWQTDCI 174 (266)
T ss_dssp EEEETTSSEE
T ss_pred EEecCCCCeE
Confidence 7776554444
No 348
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.53 E-value=3.8e-05 Score=81.46 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=97.3
Q ss_pred ccceeeeccCCCcccchhHHHHHHHHh---hccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--c---
Q 035500 72 DIEAVDILSKRPCFLKEEYIMSLMHAI---DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--V--- 143 (606)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~--- 143 (606)
.+..+|+ +.|.+....+-.+...+ +..|+.+||+++.++...+..++..=..++.|||++|.|..... +
T Consensus 73 ~L~~L~L---s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNL---AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEEC---TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEe---cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3556666 44556666555555553 47999999999999988887776554478999999998855331 1
Q ss_pred --cccccccEEecccCCCcccccccc----cccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhceec
Q 035500 144 --GRFMHLNTLSLDFCSSLASLHEDC----FSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 144 --~~~~~l~tl~l~~~~~~~~~~~~~----~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~~ 209 (606)
....+|.+|+|. +|.|+...-.. +..+|+|+.|.|.+|+|.+.- .-..+|.+.++|++|.+..|-
T Consensus 150 L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLS-NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECC-SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCC-CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 135789999999 77888743322 367899999999999988642 124677888999999977753
No 349
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.50 E-value=4.9e-05 Score=87.59 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=66.2
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|++++|+++.+. ..-.+++ .-..=+.|+|++|+|..+. .++.+.+|.+|+|. .|.|+.|++. |..|++|+.|.
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSLPAE-LGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSCCSS-GGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCccChh-hcCCCCCCEEE
Confidence 56777787776654 1112232 2233456788888777664 36677788888888 6777777544 77778888888
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhce
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
|.+|++..+-. .+.+|++|++|.+..
T Consensus 300 L~~N~l~~lp~---~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 300 FFDNMVTTLPW---EFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSSCCCCCCS---STTSCTTCCCEECTT
T ss_pred CCCCCCCccCh---hhhcCCCccEEeCCC
Confidence 88887775532 266777777776544
No 350
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.47 E-value=4e-05 Score=78.28 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=30.5
Q ss_pred EEEccccchhcc--cccccc---ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhh
Q 035500 129 VLILRATNIRKL--NMVGRF---MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 129 ~~~~~~~~~~~l--~~~~~~---~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
.|||++|+|..+ ..++.+ ++|++|+|+ .|.|+.++...+ |+|+.|.+.+|++..+ ..+..+|+|++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~----~~~~~l~~L~~L 299 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLS-FAGLEQVPKGLP---AKLRVLDLSSNRLNRA----PQPDELPEVDNL 299 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECC-SSCCCSCCSCCC---SCCSCEECCSCCCCSC----CCTTSCCCCSCE
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECC-CCCCCchhhhhc---CCCCEEECCCCcCCCC----chhhhCCCccEE
Confidence 345555554444 223333 345555555 444554443322 4555555555554433 223444555544
Q ss_pred h
Q 035500 204 R 204 (606)
Q Consensus 204 ~ 204 (606)
.
T Consensus 300 ~ 300 (310)
T 4glp_A 300 T 300 (310)
T ss_dssp E
T ss_pred E
Confidence 4
No 351
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.45 E-value=0.00013 Score=79.52 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=59.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccccccc-ccccEEecccCCCcccccccccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRF-MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~ 178 (606)
.+|+.+||+++.+....-...+..-.+=+.|+|++|++...- ...+ .+|++|.|. +|.|+.+++..| .+|+|+.|.
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~L~~L~Ls-~N~l~~ip~~~~-~l~~L~~L~ 450 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLH-SNKIKSIPKQVV-KLEALQELN 450 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-GGSCCTTCCEEECC-SSCCCCCCGGGG-GCTTCCEEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-hhhhcccCCEEECC-CCcccccchhhh-cCCCCCEEE
Confidence 455555555555443222222222223455666666654321 1122 577777777 667777776655 777777777
Q ss_pred cccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 179 MCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 179 ~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|.+|++..+-.. ++..+++|++|.+..+
T Consensus 451 L~~N~l~~l~~~--~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 451 VASNQLKSVPDG--IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCSSCCCCCCTT--TTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHH--HhccCCcccEEECcCC
Confidence 777777755322 4666777777776654
No 352
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.44 E-value=6.9e-06 Score=78.52 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=46.1
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccccccccccccEEecccCCCcccccc-cccccCccccEEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLS 178 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~ 178 (606)
.+|+.++|+++.+. .+-.+...-.+=+.|+|++|+|..+..++.+++|++|+|. .|.|+.++. +.|..+|+|+.|.
T Consensus 70 ~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 70 ENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS-NNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp TTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES-EEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC-CCcCCchhHHHHHhcCCCCCEEE
Confidence 45666666665444 1222221112334566666666666555566666666666 556666544 4466666666666
Q ss_pred cccccccc
Q 035500 179 MCETRIVN 186 (606)
Q Consensus 179 ~~~~~~~~ 186 (606)
|.+|++..
T Consensus 147 l~~N~l~~ 154 (198)
T 1ds9_A 147 LAGNPLYN 154 (198)
T ss_dssp ECSCHHHH
T ss_pred ecCCcccc
Confidence 66665543
No 353
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=80.67 Aligned_cols=106 Identities=24% Similarity=0.206 Sum_probs=72.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+||++||+++.+..-. .+.+..=..=++|+|++|++..+. .++.+.+|++|+|. .|.|+.++...|..+++|+.|
T Consensus 52 ~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TSCCCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc-ccccccCCCccccccccccEE
Confidence 46888888887543210 111121224467888888888774 57788888888888 778888877778888888888
Q ss_pred EcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 178 SMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 178 ~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+.+|++..+ .--+++.+|++|++|.+..+
T Consensus 130 ~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 130 NVAHNLIQSF-KLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp ECCSSCCCCC-CCCGGGGGCTTCCEEECTTS
T ss_pred ecCCCcccee-cChhhhcccCCCCEEeCcCC
Confidence 8888877642 11245677788888876654
No 354
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.40 E-value=0.0002 Score=66.84 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=67.3
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEccccchhcccc--ccccccccEEecccCCCcccccccccccCccccEE
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCL 177 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l 177 (606)
.+|+.++|++|.+..-. .+.+..=-+=+.|+|++|+|..+.- ++.+++|++|+|. .|.|+.++++-|..||+|+.|
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-DNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-CCccCEeCHHHhcCCCCCCEE
Confidence 67899999997664321 1111111245789999999999874 6789999999999 899999999999999999999
Q ss_pred Eccccccc
Q 035500 178 SMCETRIV 185 (606)
Q Consensus 178 ~~~~~~~~ 185 (606)
.|.+|.+.
T Consensus 108 ~L~~N~~~ 115 (170)
T 3g39_A 108 WLLNNPWD 115 (170)
T ss_dssp ECCSSCBC
T ss_pred EeCCCCCC
Confidence 99999765
No 355
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.39 E-value=0.0015 Score=70.63 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=89.7
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLN 513 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~ 513 (606)
+++.+++.... ++|.++|..+++.+..+.. |. .+ ++.++|++ ++++.+. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~-~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GF-LP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CS-SC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CC-CC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECC
Confidence 55655555442 6999999999999988874 33 34 89999954 5554443 47799999998
Q ss_pred CCCCCcccccCCcceEEeec--------CCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEEEcCCCCC-----
Q 035500 514 HIPPKVADARGNSSVATYYD--------FEQLTSVHVNSTDDQFLASGY--SKNVALYDINTEKPLQLFTDMHRE----- 578 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~--------~~~V~sV~~sp~g~~LaSgs~--Dg~I~IWDlrt~k~v~~l~~gH~~----- 578 (606)
+. ..+.++.- ...-..+.++|+|++++.+.. ++.|.+.|+.+++.+..++.+...
T Consensus 158 t~----------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~ 227 (426)
T 3c75_H 158 TF----------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPA 227 (426)
T ss_dssp TC----------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred CC----------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccC
Confidence 84 33444331 122457889999998888764 588999999999998888742210
Q ss_pred -CeEEEEEeCCCCeEEEEE
Q 035500 579 -PINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 579 -~I~sV~fsP~g~~LLaTg 596 (606)
.-.-+.++++|..++++.
T Consensus 228 g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp ETTEEEEEETTSSEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEC
Confidence 011245666666544444
No 356
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.38 E-value=0.0049 Score=70.00 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=95.4
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEeccC-CCCCEEEEEEeeCCCCEE-EEEEC
Q 035500 441 RQFEYNPSNPSLMAFGTLDGE-------------VIVINHENGNV--ACYIPSIG-GTNSVLGLCWLKKYPSKL-VAGSD 503 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DGt-------------VrIWDi~tg~~--v~~~~~~g-H~~~V~~L~fsp~~~~~L-aSgS~ 503 (606)
..++|+ |++.|+.++.+.. |++|++.++.. ...+.... |...+.++.|+|+ +.++ ++.+.
T Consensus 178 ~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~ 254 (693)
T 3iuj_A 178 SGISWL--GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAAN 254 (693)
T ss_dssp CCCEEE--TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEES
T ss_pred ccEEEe--CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEcc
Confidence 456798 7788888887744 99999987543 33333334 5556889999995 5554 55443
Q ss_pred ---CCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEE-EEEeCC---CcEEEEECCCCce--eEEEc
Q 035500 504 ---SGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQF-LASGYS---KNVALYDINTEKP--LQLFT 573 (606)
Q Consensus 504 ---DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~L-aSgs~D---g~I~IWDlrt~k~--v~~l~ 573 (606)
+..|.+||+..+. .....+. +....... |++++..| +.+..+ +.|..||+.++.. ...+.
T Consensus 255 ~~~~~~i~~~d~~~~~---------~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 255 STSGNRLYVKDLSQEN---------APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp SSSCCEEEEEETTSTT---------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred CCCCcEEEEEECCCCC---------CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 3589999987742 1233333 33334444 56666644 444443 6799999998754 34555
Q ss_pred CCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 574 DMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 574 ~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.|...+. .|+|++.+++++...|+.-+
T Consensus 325 -~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 325 -PERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp -CCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred -cCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 4666655 89999998888877776433
No 357
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.34 E-value=0.00016 Score=79.96 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=54.2
Q ss_pred eeEEEccccchhcccccccc-ccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 127 CHVLILRATNIRKLNMVGRF-MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~-~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
=+.|+|++|++... ....+ .+|++|.|+ +|.|+.|+++.| .+|+|+.|.+.+|++..+-.. ++..+++|++|.+
T Consensus 430 L~~L~l~~n~l~~~-~~~~l~~~L~~L~L~-~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGS-VFRCLPPKVKVLDLH-NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGG-GGSSCCTTCSEEECC-SSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcc-hhhhhcCcCCEEECC-CCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEe
Confidence 34566666655421 12233 588888888 778888888777 888888888888888866433 4777888888877
Q ss_pred ceec
Q 035500 206 QMCL 209 (606)
Q Consensus 206 ~~~~ 209 (606)
.+.+
T Consensus 505 ~~N~ 508 (562)
T 3a79_B 505 HDNP 508 (562)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6643
No 358
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.005 Score=66.91 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=104.1
Q ss_pred ceeEEEEcCCCCCEEEEEeCC------CcEEEEECCCCceEEEEeccCCC-CCEEEEEEeeCCCCEEEEEE---------
Q 035500 439 RPRQFEYNPSNPSLMAFGTLD------GEVIVINHENGNVACYIPSIGGT-NSVLGLCWLKKYPSKLVAGS--------- 502 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~-~~V~~L~fsp~~~~~LaSgS--------- 502 (606)
++..+...| ++ +++++..+ |.|.++|.++++.+..++..++. .--+.+-|+| +.+.++|..
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTT
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccccc
Confidence 366778899 88 77776666 78999999999998877643232 2345688898 556777764
Q ss_pred ----------CCCeEEEEeCCCCCCCcccccCCcceEEeecC---CCeEEEEE--ccCCCEEEEEe------CCCcEEEE
Q 035500 503 ----------DSGCVRLFDLNHIPPKVADARGNSSVATYYDF---EQLTSVHV--NSTDDQFLASG------YSKNVALY 561 (606)
Q Consensus 503 ----------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~---~~V~sV~~--sp~g~~LaSgs------~Dg~I~IW 561 (606)
.+.+|.+||+.+. +.+.++... .....|.| +|++++.+.++ .+++|.+|
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~ 285 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKR----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW 285 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTT----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred ccchhhhhhccCCEEEEEECCCC----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence 4789999999873 344555542 12445656 99998777666 45688776
Q ss_pred ECCCCce--eEE--EcC----C-----------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 562 DINTEKP--LQL--FTD----M-----------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 562 Dlrt~k~--v~~--l~~----g-----------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
....++- .+. +.. + -......|.++|+|++++++.-..+.|+.
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav 347 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ 347 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence 5544421 111 110 0 02457789999999999999888888765
No 359
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.32 E-value=0.00016 Score=83.22 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhh
Q 035500 124 GSSCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLME 202 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~ 202 (606)
--.=++|+|++|.|..+. .++.+.+|.+|+|. +|.|+.|+ ..|..|++|+.|.|.+|++..+.. .+..|++|++
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKY 297 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccC-hhhhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCE
Confidence 334567888888887775 45577788888888 77777776 347778888888888888775533 3556666777
Q ss_pred hhhce
Q 035500 203 LRFQM 207 (606)
Q Consensus 203 l~~~~ 207 (606)
|.+.+
T Consensus 298 L~L~~ 302 (727)
T 4b8c_D 298 FYFFD 302 (727)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 76554
No 360
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.25 E-value=0.012 Score=59.59 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
...+.+....++.+.+||.++.+.+..++..+ .-+++++. + ..|+.+..++.|.++|..+.+ .+
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~---eGwGLt~D--g-~~L~vSdGs~~l~~iDp~T~~----------v~ 168 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSG---EGWGLCYW--N-GKLVRSDGGTMLTFHEPDGFA----------LV 168 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSS---CCCCEEEE--T-TEEEEECSSSEEEEECTTTCC----------EE
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCC---ceeEEecC--C-CEEEEECCCCEEEEEcCCCCe----------EE
Confidence 34555566678999999999999999887533 34666654 3 455555568899999988742 23
Q ss_pred EEee---cC---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC------------CCCCeEEEEEeCCCC
Q 035500 529 ATYY---DF---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM------------HREPINVAKFSHHSP 590 (606)
Q Consensus 529 ~t~~---~~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g------------H~~~I~sV~fsP~g~ 590 (606)
.+.. .. ..++.+.|. +|.+++....+..|.+.|.++++.+..+..+ -..-.+.|+|+|++.
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred EEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence 3332 11 236778877 6666666667889999999999998777631 113568999999998
Q ss_pred eEEEEEe
Q 035500 591 LCLLLLH 597 (606)
Q Consensus 591 ~LLaTgS 597 (606)
.+++||-
T Consensus 248 rlfVTGK 254 (268)
T 3nok_A 248 RIFMTGK 254 (268)
T ss_dssp CEEEEET
T ss_pred EEEEeCC
Confidence 8998873
No 361
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.24 E-value=0.0095 Score=60.26 Aligned_cols=136 Identities=7% Similarity=-0.073 Sum_probs=95.4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
.+.++.-.+++|.++|..+++.+..++. + ...-+++++ ++...++ +..+++|.++|..+.+ .+.+
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~-g-~~~g~glt~--Dg~~l~v-s~gs~~l~viD~~t~~----------v~~~ 141 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTH-Q-MKDGWGLAT--DGKILYG-SDGTSILYEIDPHTFK----------LIKK 141 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEEC-C-SSSCCEEEE--CSSSEEE-ECSSSEEEEECTTTCC----------EEEE
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEEC-C-CCCeEEEEE--CCCEEEE-ECCCCeEEEEECCCCc----------EEEE
Confidence 4445555689999999999999988864 3 223345554 3444444 4468899999988732 2333
Q ss_pred eec---C---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-C-----------CCCeEEEEEeCCCCeE
Q 035500 531 YYD---F---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-H-----------REPINVAKFSHHSPLC 592 (606)
Q Consensus 531 ~~~---~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H-----------~~~I~sV~fsP~g~~L 592 (606)
..- . ..++.+.|. ++..++....++.|.+.|..+++.+..+..+ - ....+.++|+|++..+
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 331 1 236788888 6666666667899999999999998888631 0 1356899999999999
Q ss_pred EEEEeCCCeE
Q 035500 593 LLLLHLTTMS 602 (606)
Q Consensus 593 LaTgS~DgtI 602 (606)
++|+.....+
T Consensus 221 fVTgk~~~~v 230 (266)
T 2iwa_A 221 FVTGKLWPKL 230 (266)
T ss_dssp EEEETTCSEE
T ss_pred EEECCCCCeE
Confidence 9999877655
No 362
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.21 E-value=0.00033 Score=74.16 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=100.1
Q ss_pred CccceeeeccCCCcccchhHHHHHHHHhhccceEEEccCccccchHHHhhcc----CCCceeEEEccccchhccc-----
Q 035500 71 FDIEAVDILSKRPCFLKEEYIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQ----VGSSCHVLILRATNIRKLN----- 141 (606)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~----- 141 (606)
..++.+|+ +.|.+..+-+..+..++- +|+.++|++|.++...+..|+. ....=+.|+|++|.|....
T Consensus 101 ~~L~~L~L---s~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNL---ASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEEC---TTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEe---cCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 46777777 455677777766666654 7999999999999887777653 3345678999999987633
Q ss_pred -cccccccccEEecccCCCccccc----ccccccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhcee
Q 035500 142 -MVGRFMHLNTLSLDFCSSLASLH----EDCFSCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 142 -~~~~~~~l~tl~l~~~~~~~~~~----~~~~~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~~ 208 (606)
.+...+.|++|+|. .|.|+... ...+..+++|+.|.|.+|+|.+.- .-..+|...++|++|.+..+
T Consensus 177 ~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 22467899999999 77888654 244677899999999999998642 23356778899999997764
No 363
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.17 E-value=0.00025 Score=82.79 Aligned_cols=103 Identities=21% Similarity=0.334 Sum_probs=56.2
Q ss_pred ccceEEEccCcccc----chHHHhhccCCCceeEEEccccchhcc--ccccccccccEEecccCCCccc--ccccccccC
Q 035500 100 QKLRVVDLSNITLR----NDNLLDLCQVGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLAS--LHEDCFSCM 171 (606)
Q Consensus 100 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~--~~~~~~~~~ 171 (606)
.+||++||+++.+. .+.+++|. .=++|+|++|.|..+ ..++.+.+|++|+|. .|.++. .....|..+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLP----NLRILDLGSSKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCT----TCCEEECTTCCCCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCC----CCCEEECCCCcCcccCHhHccCCcccCEeeCc-CCCCCcccccCcccccc
Confidence 45666666665222 12222222 234566666666665 355666666666666 555554 333456666
Q ss_pred ccccEEEcccccccchhhhhHHhhcCCchhhhhhcee
Q 035500 172 PYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMC 208 (606)
Q Consensus 172 p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~ 208 (606)
|+|+.|.+.+|++..+. ..+.+.+|++|++|.+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence 66666666666665431 1134556666666665543
No 364
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.0065 Score=65.98 Aligned_cols=142 Identities=9% Similarity=0.127 Sum_probs=96.9
Q ss_pred CCCCCEE-EEEeCCCcEEEEECCCC----ceEEEEe---c---cCCCCCEEEEEEeeCCCCEEEEEECC------CeEEE
Q 035500 447 PSNPSLM-AFGTLDGEVIVINHENG----NVACYIP---S---IGGTNSVLGLCWLKKYPSKLVAGSDS------GCVRL 509 (606)
Q Consensus 447 P~dg~~L-aSGs~DGtVrIWDi~tg----~~v~~~~---~---~gH~~~V~~L~fsp~~~~~LaSgS~D------gtIkl 509 (606)
+ +.+++ ++|-.+++|.|+|+.+. +...+++ . .+ ...-..+...|+ + .++|+..+ |.|.+
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPD-A-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCC-e-EEEEcCCCcCCCCCCeEEE
Confidence 5 45555 45667899999998765 4555552 1 11 113455677774 4 77777666 78999
Q ss_pred EeCCCCCCCcccccCCcceEEeec-CCC---eEEEEEccCCCEEEEEe-------------------CCCcEEEEECCCC
Q 035500 510 FDLNHIPPKVADARGNSSVATYYD-FEQ---LTSVHVNSTDDQFLASG-------------------YSKNVALYDINTE 566 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~t~~~-~~~---V~sV~~sp~g~~LaSgs-------------------~Dg~I~IWDlrt~ 566 (606)
.|..+. ..+.++.. ..+ -..+.|+|+++.++++. .+.+|.+||+.++
T Consensus 169 lD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 169 LDHYSF----------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp ECTTTC----------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred EECCCC----------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 998873 34555542 111 34688899999888885 4689999999999
Q ss_pred ceeEEEcCCCC-CCeEEEEE--eCCCCeEEEEEe-----CCCeE
Q 035500 567 KPLQLFTDMHR-EPINVAKF--SHHSPLCLLLLH-----LTTMS 602 (606)
Q Consensus 567 k~v~~l~~gH~-~~I~sV~f--sP~g~~LLaTgS-----~DgtI 602 (606)
+.+.++..+.. .....+.| +|++++.++++- .+++|
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 88888875322 23445666 999999888887 66665
No 365
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.15 E-value=0.017 Score=57.66 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+.+.+..-.++.+.+||.++.+.+..++..+ .-+++++. +..+++| ..++.|.++|..+.. .+.
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt~d--g~~L~vS-dgs~~l~~iDp~t~~----------~~~ 138 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPG---EGWALTSD--DSHLYMS-DGTAVIRKLDPDTLQ----------QVG 138 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSS---CCCEEEEC--SSCEEEE-CSSSEEEEECTTTCC----------EEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCC---CceEEeeC--CCEEEEE-CCCCeEEEEeCCCCe----------EEE
Confidence 3455555678999999999999999887533 33666643 4445555 458899999988742 233
Q ss_pred Eeec------CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC------------CCCCeEEEEEeCCCCe
Q 035500 530 TYYD------FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM------------HREPINVAKFSHHSPL 591 (606)
Q Consensus 530 t~~~------~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g------------H~~~I~sV~fsP~g~~ 591 (606)
+... ...++.+.|. +|..++....+..|.+.|.++++.+..+.-+ -..-.+.|+|+|++..
T Consensus 139 ~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 139 SIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred EEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 3331 1336677766 5666666667789999999999998777621 1135689999999998
Q ss_pred EEEEEe
Q 035500 592 CLLLLH 597 (606)
Q Consensus 592 LLaTgS 597 (606)
+++||-
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 998873
No 366
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.12 E-value=0.0061 Score=69.44 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=102.4
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDG-------------------EVIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DG-------------------tVrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +++.++.++.++ .|..+|..+|+.+..++...|. ....-+.... ++
T Consensus 247 ~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG 324 (677)
T 1kb0_A 247 SMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG 324 (677)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred ceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence 567888 677888887764 5999999999999988765553 1222223322 33
Q ss_pred ---CEEEEEECCCeEEEEeCCCCCCCcccccCC-----------cceE------------Eee---cCCCeEEEEEccCC
Q 035500 496 ---SKLVAGSDSGCVRLFDLNHIPPKVADARGN-----------SSVA------------TYY---DFEQLTSVHVNSTD 546 (606)
Q Consensus 496 ---~~LaSgS~DgtIklWDl~~~~~~~~~l~~~-----------~~i~------------t~~---~~~~V~sV~~sp~g 546 (606)
..++.++.+|.+.++|..+++..-...... .++. .+. +...-..++++|+.
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 578899999999999998864311000000 0000 000 00001257889988
Q ss_pred CEEEEEeC-------------------------------------------CCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 547 DQFLASGY-------------------------------------------SKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 547 ~~LaSgs~-------------------------------------------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
.++++... .+.|..||+.+++.+..++ +...++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g 482 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGG 482 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCc
Confidence 87777543 2789999999999988887 34455556
Q ss_pred EEeCCCCeEEEEEeCCCeEEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIRc 604 (606)
.+...+.. +..++.|+.+++
T Consensus 483 ~~~~~g~~-v~~g~~dg~l~a 502 (677)
T 1kb0_A 483 TLTTAGNV-VFQGTADGRLVA 502 (677)
T ss_dssp EEEETTTE-EEEECTTSEEEE
T ss_pred ceEeCCCE-EEEECCCCcEEE
Confidence 66677774 556788998875
No 367
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.018 Score=61.73 Aligned_cols=151 Identities=11% Similarity=0.159 Sum_probs=94.6
Q ss_pred ceeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE-EEEECCC----eEEEEeC
Q 035500 439 RPRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL-VAGSDSG----CVRLFDL 512 (606)
Q Consensus 439 rV~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L-aSgS~Dg----tIklWDl 512 (606)
.+..++++|. ++ .|..+...+.|+.+|...+...... .......+++|++ ++..| ++...++ .+...+.
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence 3678899983 45 4555544488999999876654433 2345688999998 45644 4443222 2333332
Q ss_pred CCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCe
Q 035500 513 NHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.. . ......+........++++| ++.++++-..++.|..||...+........+....-+.++|+|++.+
T Consensus 213 ~g-~--------~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 213 ES-G--------FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp GG-T--------SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred CC-c--------eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 22 1 11112232333457788999 66777777778999999998766533333222345678999999998
Q ss_pred EEEEEeCCCeEE
Q 035500 592 CLLLLHLTTMSR 603 (606)
Q Consensus 592 LLaTgS~DgtIR 603 (606)
++++-.....|.
T Consensus 284 lyv~d~~~~~I~ 295 (430)
T 3tc9_A 284 AYIVVVNQHYIL 295 (430)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCEEE
Confidence 788777666664
No 368
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.11 E-value=0.00027 Score=73.49 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCc-ccccccccccCccccE-EEcccccccchhhhhHHhhcCCchhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSL-ASLHEDCFSCMPYLMC-LSMCETRIVNLWTTTAAISKLPYLMEL 203 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~-~~~~~~~~~~~p~l~~-l~~~~~~~~~l~~~~~~l~~~~~l~~l 203 (606)
+.|+|++|+|+.+. .+..+.+|++|+|. .|.| +.++.+.|..+|+|.. +.+..|++..+- -.++..|++|+.|
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L 109 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYL 109 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEE-CCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECc-CCCCCCccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccc
Confidence 44555555555553 24455555555555 3333 3344455555555443 233334444331 1234445555555
Q ss_pred hhce
Q 035500 204 RFQM 207 (606)
Q Consensus 204 ~~~~ 207 (606)
.+.+
T Consensus 110 ~l~~ 113 (350)
T 4ay9_X 110 LISN 113 (350)
T ss_dssp EEEE
T ss_pred cccc
Confidence 5443
No 369
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.10 E-value=0.012 Score=67.07 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=101.2
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGE-------------------VIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGt-------------------VrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +.++++.++.++. |..||..+|+.+..++...|. .......... ++
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G 316 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DG 316 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CC
Confidence 467888 6778999988874 999999999999888765443 1222222222 22
Q ss_pred C---EEEEEECCCeEEEEeCCCCCCCcc------ccc------CCcce---------------EEee---cCCCeEEEEE
Q 035500 496 S---KLVAGSDSGCVRLFDLNHIPPKVA------DAR------GNSSV---------------ATYY---DFEQLTSVHV 542 (606)
Q Consensus 496 ~---~LaSgS~DgtIklWDl~~~~~~~~------~l~------~~~~i---------------~t~~---~~~~V~sV~~ 542 (606)
. .++.++.+|.++++|..+++.... .+. ...++ ..+. +......+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 2 688899999999999988643100 000 00000 0000 0011234788
Q ss_pred ccCCCEEEEEeC---------------------------------------------CCcEEEEECCCCceeEEEcCCCC
Q 035500 543 NSTDDQFLASGY---------------------------------------------SKNVALYDINTEKPLQLFTDMHR 577 (606)
Q Consensus 543 sp~g~~LaSgs~---------------------------------------------Dg~I~IWDlrt~k~v~~l~~gH~ 577 (606)
+|+..++++.+. +|.|..||+.+++.+..++. +
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~- 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-V- 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-S-
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-C-
Confidence 888887776532 37799999999999888873 3
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 578 EPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 578 ~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
..+....+...+. ++..|+.|+.++.
T Consensus 475 ~~~~~g~~~tagg-lvf~gt~dg~l~a 500 (689)
T 1yiq_A 475 TIFNGGTLSTAGN-LVFEGSADGRVIA 500 (689)
T ss_dssp SSCCCCEEEETTT-EEEEECTTSEEEE
T ss_pred CCccCccceECCC-EEEEECCCCcEEE
Confidence 3344445566666 5677899999885
No 370
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.09 E-value=0.027 Score=57.02 Aligned_cols=152 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc---------C--------CCCCEEEEEEeeCCCCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI---------G--------GTNSVLGLCWLKKYPSKLVAGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~---------g--------H~~~V~~L~fsp~~~~~LaSgS 502 (606)
+..++|+| +++++.++..++.|..||..++......... + ....+.++++.+.+ ..|+.+.
T Consensus 21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYIVD 98 (322)
T ss_dssp CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEEEE
T ss_pred ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEEEE
Confidence 56778999 7887888889999999998765543221100 0 11357899998633 4555565
Q ss_pred CCCeEEEEeCCCCCCCcccccCCcceE-Eeec--CCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEE
Q 035500 503 DSGCVRLFDLNHIPPKVADARGNSSVA-TYYD--FEQLTSVHVNS-TDDQFLASGY-----------------SKNVALY 561 (606)
Q Consensus 503 ~DgtIklWDl~~~~~~~~~l~~~~~i~-t~~~--~~~V~sV~~sp-~g~~LaSgs~-----------------Dg~I~IW 561 (606)
..+.|..+|...... ..+. ...+ ....+.+++.+ +|+++++-.. ++.|..|
T Consensus 99 ~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTTEEEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCCCEEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 555688888664210 0111 1111 13478899999 8887776533 3678999
Q ss_pred ECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 562 DINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 562 Dlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|..+++...... .-...+.++|+|++..++++-+..+.|.
T Consensus 171 d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~ 210 (322)
T 2fp8_A 171 DPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIV 210 (322)
T ss_dssp ETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEE
T ss_pred eCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEE
Confidence 988776533222 1234567999999987777766655553
No 371
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.07 E-value=0.012 Score=59.52 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=89.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
.+.+..-.++.+.+||.++.+.+..++..+ .-+++++. +..+++| ..++.|.++|..+.+ .+.+
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~d--g~~L~~S-dGs~~i~~iDp~T~~----------v~~~ 161 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHN--DQYLIMS-DGTPVLRFLDPESLT----------PVRT 161 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEEC--SSCEEEC-CSSSEEEEECTTTCS----------EEEE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecC--CCEEEEE-CCCCeEEEEcCCCCe----------EEEE
Confidence 344444568999999999999999887533 23455543 4344444 447789999988742 2333
Q ss_pred eec---C---CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---------C--CCCeEEEEEeCCCCeEE
Q 035500 531 YYD---F---EQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---------H--REPINVAKFSHHSPLCL 593 (606)
Q Consensus 531 ~~~---~---~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---------H--~~~I~sV~fsP~g~~LL 593 (606)
... . ..++.+.|. +|.+++....++.|.+.|.++++.+..+..+ + ....+.|+|+|++..++
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 221 1 335667776 6666666667889999999999998777631 0 13568999999999888
Q ss_pred EEEe
Q 035500 594 LLLH 597 (606)
Q Consensus 594 aTgS 597 (606)
+||-
T Consensus 241 VTGK 244 (262)
T 3nol_A 241 VTGK 244 (262)
T ss_dssp EEET
T ss_pred EECC
Confidence 8873
No 372
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.06 E-value=0.022 Score=57.44 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=101.7
Q ss_pred cceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEE
Q 035500 421 LHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKL 498 (606)
Q Consensus 421 i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~L 498 (606)
....++....+|+.. .+ ...+.|+ ++.+..+++.+| .|+++|.++++......+.. .-..-++... +....
T Consensus 28 ~~~~~vv~~~phd~~-~f-tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly 100 (262)
T 3nol_A 28 IYDYQIVHSYPHDTK-AF-TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIV 100 (262)
T ss_dssp EEEEEEEEEEECCTT-CE-EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEE
T ss_pred ccceEEEEEecCCCC-cc-cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEE
Confidence 344444445555543 11 4678887 456777777776 99999999999988776522 2122345554 33445
Q ss_pred EEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---
Q 035500 499 VAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM--- 575 (606)
Q Consensus 499 aSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g--- 575 (606)
++.-.++.+.+||..+. +.+.++.....-..+ .+++..++.+..++.|.++|..+.+.+..++-+
T Consensus 101 ~ltw~~~~v~v~D~~t~----------~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 101 GLTWKNGLGFVWNIRNL----------RQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp EEESSSSEEEEEETTTC----------CEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred EEEeeCCEEEEEECccC----------cEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 55556899999999883 456666643322334 356766555555789999999999887776631
Q ss_pred CC-CCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 576 HR-EPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 576 H~-~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.. ..++.+.|. +| .+++..-.+..|
T Consensus 169 ~~~~~lNELe~~-~G-~lyan~w~~~~I 194 (262)
T 3nol_A 169 EELPELNELEWV-DG-EIFANVWQTNKI 194 (262)
T ss_dssp EECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred ccccccceeEEE-CC-EEEEEEccCCeE
Confidence 11 445667776 44 477666444433
No 373
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.06 E-value=0.032 Score=56.42 Aligned_cols=163 Identities=8% Similarity=-0.056 Sum_probs=106.7
Q ss_pred CCccceeeecccccccCceeeceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCE
Q 035500 418 WPLLHPVSSFSHIYKEGNKRVRPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSK 497 (606)
Q Consensus 418 ~~~i~~l~i~~~~~~~G~~~~rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~ 497 (606)
.|...+.++....+++... + ...+.|+ ++.+..+.+.+|.|+++|.++++..... + +..-..-++.+. +...
T Consensus 37 ~~~~~~~~Vv~~~phd~~~-f-tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~L 108 (268)
T 3nok_A 37 EPVRRVAHIIREYPHATNA-F-TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERL 108 (268)
T ss_dssp CCEEEEEEEEEEEECCTTC-C-EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCE
T ss_pred CccccceEEEEEEcCCCcc-c-cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEE
Confidence 3434444555555555431 1 4677886 4567778888899999999999998876 4 322223346554 4466
Q ss_pred EEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-C
Q 035500 498 LVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-H 576 (606)
Q Consensus 498 LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H 576 (606)
.++.-.++.+.+||..+ .+.+.++.....-+.++ +++..++.+..++.|.++|..+.+.+..++-+ +
T Consensus 109 y~ltw~~~~v~V~D~~T----------l~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMP----------PQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EEEESSSCEEEEEETTT----------TEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEEccCCEEEEEECCc----------CcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 66666899999999998 34566666433334444 46777777767899999999999887777631 1
Q ss_pred C---CCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 577 R---EPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 577 ~---~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
. ..++.+.|. +| .+++..-.+..|
T Consensus 177 g~~v~~lNeLe~~-dG-~lyanvw~s~~I 203 (268)
T 3nok_A 177 GQPVELINELECA-NG-VIYANIWHSSDV 203 (268)
T ss_dssp TEECCCEEEEEEE-TT-EEEEEETTCSEE
T ss_pred CcccccccccEEe-CC-EEEEEECCCCeE
Confidence 1 245777777 44 577766444433
No 374
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.05 E-value=0.0003 Score=72.67 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=58.3
Q ss_pred ceeEEEccc-cchhcccc--ccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhh
Q 035500 126 SCHVLILRA-TNIRKLNM--VGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLME 202 (606)
Q Consensus 126 ~~~~~~~~~-~~~~~l~~--~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~ 202 (606)
+=+.|+|++ |+|..+.. ++.+.+|++|+|. +|.|+.+..+-|..||+|+.|.|.+|++..+-.. .+..++ |++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK--TVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST--TTCSCC-CCE
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCCccceeCHH--HcccCC-ceE
Confidence 356788885 88888863 7788888999998 7788888888888889999999988888766322 222333 777
Q ss_pred hhhce
Q 035500 203 LRFQM 207 (606)
Q Consensus 203 l~~~~ 207 (606)
|.+.+
T Consensus 108 l~l~~ 112 (347)
T 2ifg_A 108 LVLSG 112 (347)
T ss_dssp EECCS
T ss_pred EEeeC
Confidence 76554
No 375
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.00 E-value=0.042 Score=57.05 Aligned_cols=151 Identities=9% Similarity=0.043 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-...+.|+.++...+....... .......++++.+.++.++++-+..+.|.+.+.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 67889998566566666678899999988655433222 2223467888887555666777778899999987621
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-.....+++.|.+. ++++-... +.|..+++..... ..+....-..-+.++|+|.+..++.+-
T Consensus 150 -------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 150 -------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp -------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred -------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 112222 234478999999765 45555555 7888888874332 233212234578999999888888877
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 222 ~~~~~I~ 228 (349)
T 3v64_C 222 AKHHVIE 228 (349)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 6666554
No 376
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.99 E-value=0.0044 Score=65.60 Aligned_cols=158 Identities=9% Similarity=-0.137 Sum_probs=100.5
Q ss_pred EEEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccCCC-----CCEEEEEEeeCCCCEEEEEEC--C
Q 035500 442 QFEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIGGT-----NSVLGLCWLKKYPSKLVAGSD--S 504 (606)
Q Consensus 442 slafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~gH~-----~~V~~L~fsp~~~~~LaSgS~--D 504 (606)
.++++| ++++++++. .+++|.+||..+++.+..+..-+.. .....++++| ++++++.+.. +
T Consensus 69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCC
Confidence 578999 888888876 3789999999999999887642111 2355788998 5566666653 4
Q ss_pred CeEEE--EeCCC------CC----------------CC-------ccc---------------c-cCCcc----------
Q 035500 505 GCVRL--FDLNH------IP----------------PK-------VAD---------------A-RGNSS---------- 527 (606)
Q Consensus 505 gtIkl--WDl~~------~~----------------~~-------~~~---------------l-~~~~~---------- 527 (606)
..+.+ ||..+ +. .. ... + .+..|
T Consensus 147 ~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~ 226 (368)
T 1mda_H 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred CeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEE
Confidence 56888 87732 00 00 000 0 00000
Q ss_pred ------eEEeecC--C----------------------CeEEEEEccCCCEEEEE-e---C-----CCcEEEEECCCCce
Q 035500 528 ------VATYYDF--E----------------------QLTSVHVNSTDDQFLAS-G---Y-----SKNVALYDINTEKP 568 (606)
Q Consensus 528 ------i~t~~~~--~----------------------~V~sV~~sp~g~~LaSg-s---~-----Dg~I~IWDlrt~k~ 568 (606)
+..+... . ....+.++|+++.++.+ . . ++.+.+||+.+.+.
T Consensus 227 ~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v 306 (368)
T 1mda_H 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence 1001100 0 00116789998866654 3 2 23566999999999
Q ss_pred eEEEcCCCCCCeEEEEEeCCCCeEEEEEe-CCCeEE
Q 035500 569 LQLFTDMHREPINVAKFSHHSPLCLLLLH-LTTMSR 603 (606)
Q Consensus 569 v~~l~~gH~~~I~sV~fsP~g~~LLaTgS-~DgtIR 603 (606)
+..++.+ ...+.++|+|++++++++.. .++.|.
T Consensus 307 v~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 307 SGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EECCEEE--EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred EEEEECC--CCcceEEECCCCCEEEEEccCCCCeEE
Confidence 8888743 36889999999998888888 577764
No 377
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.98 E-value=0.029 Score=55.06 Aligned_cols=137 Identities=8% Similarity=0.055 Sum_probs=87.2
Q ss_pred eeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL---DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~---DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~ 516 (606)
+..++++| ++..+..+.. .+.|..++..... ...+.. ..-....+++++++++.++++-...+.|..+|....
T Consensus 124 P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~- 199 (267)
T 1npe_A 124 PRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP- 199 (267)
T ss_dssp EEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-
T ss_pred ccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-
Confidence 67889999 5445544443 4788888876432 222211 223457899999855455566677789999998752
Q ss_pred CCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 517 PKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
..............++.. .+.++++....+.|..+|..+++.+..+..+.....+.+++.|++.
T Consensus 200 ---------~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 200 ---------GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ---------EEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ---------ceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 111222222334566654 3445555556789999999999988888743333567888888764
No 378
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.93 E-value=0.00093 Score=73.71 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=14.9
Q ss_pred cCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 170 CMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 170 ~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
.+|+|+.|.+.++.+..+- ..+.++++|++|.+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELV---GFFKAAANLEEFCG 250 (592)
T ss_dssp HCTTCCEEECSSCBGGGGH---HHHHHCTTCCEEEE
T ss_pred hCCCCcEEeccCccHHHHH---HHHhhhhHHHhhcc
Confidence 4455555555554444331 23344444444443
No 379
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.92 E-value=0.13 Score=51.29 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG--EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG--tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
...+.|++ +.+..+.+.+| .|+++|.++++......+..+ -.--++... +.......-.++.+.+||..+
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~t--- 94 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLAT--- 94 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTT---
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCc---
Confidence 55678876 45566666654 899999999999987765332 122345544 445555566789999999988
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-CC---CCeEEEEEeCCCCeEE
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM-HR---EPINVAKFSHHSPLCL 593 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g-H~---~~I~sV~fsP~g~~LL 593 (606)
.+.+.++.....-..++ +++..++.+..++.|.++|..+.+.+..++-+ +. ..++.+.|. +| .++
T Consensus 95 -------l~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ly 163 (243)
T 3mbr_X 95 -------LTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELL 163 (243)
T ss_dssp -------TEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred -------CcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEE
Confidence 34566666433334554 45665555556899999999999887777632 11 345667765 33 466
Q ss_pred EEEe
Q 035500 594 LLLH 597 (606)
Q Consensus 594 aTgS 597 (606)
+..-
T Consensus 164 anvw 167 (243)
T 3mbr_X 164 ANVW 167 (243)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6653
No 380
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.92 E-value=0.00057 Score=71.03 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred ceeEEEccccchhccc-cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhh
Q 035500 126 SCHVLILRATNIRKLN-MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELR 204 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~-~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~ 204 (606)
.=+.|+|+.|.|+.+. .+....+|.+|.|..+|.++.|+++.|..|++|+.|.|.+|+|..+-. .++.+|++|+.|.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARS 232 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTT
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhcc
Confidence 3567999999999886 344668999999977899999999999999999999999999998843 3355555555444
No 381
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.92 E-value=0.00061 Score=70.29 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred EEEcccc-chhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhce
Q 035500 129 VLILRAT-NIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 129 ~~~~~~~-~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~ 207 (606)
.++++++ ++..+..++.+.+|.+|+|..+|.|+.++++-|..|++|+.|.|.+|++..+- -.++..|++|++|.+..
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--TTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--HHHhcCCcCCCEEeCCC
Confidence 3677887 88888778889999999999339999999999999999999999999988762 23678899999998665
No 382
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.91 E-value=0.11 Score=52.82 Aligned_cols=151 Identities=7% Similarity=-0.061 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-..++.|..++... ......+. ..-....++++.+.++.+.++-...+.|.+.|....
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 678899985555666666679999999875 22222221 222346788888645555666677889999998752
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEE-EEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFL-ASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~La-Sgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .......+++.|.+..++ +.... +.|...++... ....+....-...+.++++|++..+
T Consensus 110 ----------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 110 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp ----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred ----------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEE
Confidence 1111222 234578999999766444 44333 68888888643 3333321233567899999988888
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-+..+.|.
T Consensus 179 Y~~D~~~~~I~ 189 (316)
T 1ijq_A 179 YWVDSKLHSIS 189 (316)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCeEE
Confidence 87776665554
No 383
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.91 E-value=0.00064 Score=68.97 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred ceeEEEccccchhcccccc----ccccccEEecccCCCcccccc-cccccCccccEEEcccccccchhhh-----hHHhh
Q 035500 126 SCHVLILRATNIRKLNMVG----RFMHLNTLSLDFCSSLASLHE-DCFSCMPYLMCLSMCETRIVNLWTT-----TAAIS 195 (606)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~----~~~~l~tl~l~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~~~l~~~-----~~~l~ 195 (606)
.-++|+|++|+|..+..++ .|++|++|+|. +|.|+++.+ +-+..+ +|+.|+|.+|.+..-+.. ...+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls-~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS-GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECT-TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECC-CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 5788999999999987655 79999999999 999999854 333334 999999999998753221 24678
Q ss_pred cCCchhhhhhc
Q 035500 196 KLPYLMELRFQ 206 (606)
Q Consensus 196 ~~~~l~~l~~~ 206 (606)
.||+|+.|..+
T Consensus 249 ~~P~L~~LDg~ 259 (267)
T 3rw6_A 249 RFPKLLRLDGH 259 (267)
T ss_dssp HCTTCCEESSC
T ss_pred HCcccCeECCc
Confidence 89999998744
No 384
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.89 E-value=0.047 Score=57.53 Aligned_cols=151 Identities=8% Similarity=0.009 Sum_probs=98.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.++.+-...+.|+.|+...+.....+. .......++++.+.++.++++-+..+.|.+.+....
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---- 191 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---- 191 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC----
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC----
Confidence 67889998566666666678899999988665433322 222345678888755566666677788888887652
Q ss_pred ccccCCcceEEee-cCCCeEEEEEccCCCEE-EEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYY-DFEQLTSVHVNSTDDQF-LASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~L-aSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
....... .......|++.|.+..+ ++-... +.|..+++.......... ..-...+.++|+|.+..++.+-
T Consensus 192 ------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 192 ------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp ------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEE
T ss_pred ------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEE
Confidence 1112222 23457899999877644 444444 788888887543333333 2334578999999888888877
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 265 ~~~~~I~ 271 (386)
T 3v65_B 265 AKHHVIE 271 (386)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 7666654
No 385
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.88 E-value=0.00092 Score=63.40 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=67.3
Q ss_pred HHHHHHHhhccceEEEccCc-cccchHHHhhcc---CCCceeEEEccccchhccc------cccccccccEEecccCCCc
Q 035500 91 IMSLMHAIDQKLRVVDLSNI-TLRNDNLLDLCQ---VGSSCHVLILRATNIRKLN------MVGRFMHLNTLSLDFCSSL 160 (606)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~------~~~~~~~l~tl~l~~~~~~ 160 (606)
++.-+-+-+..|+.++|+++ .+|.+.++.|+. .--.-++|+|+.|+|..-+ .+.....|++|+|. .|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~-~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE-SNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC-SSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc-CCcC
Confidence 33333344667777777776 776665555543 2334456777777765422 22334567777887 6677
Q ss_pred cccc----ccccccCccccEEEc--ccccccchh--hhhHHhhcCCchhhhhhce
Q 035500 161 ASLH----EDCFSCMPYLMCLSM--CETRIVNLW--TTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 161 ~~~~----~~~~~~~p~l~~l~~--~~~~~~~l~--~~~~~l~~~~~l~~l~~~~ 207 (606)
+.-. .......+.|+.|.| .+|+|..-- .-..+|.+.++|++|.+..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 6521 122445667888888 667776521 1124556667777777554
No 386
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.71 E-value=0.00066 Score=71.24 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+++|+.||.|+.||.++|+....+. .+. ...++| .+..+++++.|+.|..||..+++. +-
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~--~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~----------~W 154 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLS--SAF----ADSLSP-STSLLYLGRTEYTITMYDTKTREL----------RW 154 (369)
T ss_dssp ---CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSC----------CC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEec--CCC----cccccc-cCCEEEEEecCCEEEEEECCCCCE----------EE
Confidence 4577888999999999999999887654 222 134556 557889999999999999987532 11
Q ss_pred EeecCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCC
Q 035500 530 TYYDFEQLTSVHVNSTD---DQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHS 589 (606)
Q Consensus 530 t~~~~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g 589 (606)
.+... ......+.++. ..+++++.||.+..||.++++.+..+. ...++.. ..+++++
T Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 155 NATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREG 215 (369)
T ss_dssp EEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred eEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCc
Confidence 11100 01112223321 567778899999999999999988777 2344433 3344444
No 387
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=96.69 E-value=0.02 Score=60.91 Aligned_cols=111 Identities=14% Similarity=-0.021 Sum_probs=78.7
Q ss_pred EEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccC-----CCCCEEEEEEeeCCCCEEEEEEC--CC
Q 035500 443 FEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIG-----GTNSVLGLCWLKKYPSKLVAGSD--SG 505 (606)
Q Consensus 443 lafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~g-----H~~~V~~L~fsp~~~~~LaSgS~--Dg 505 (606)
++++| +++++++++ .++.|.+||..+++.+..+..-+ .......+.++| ++++++.+.. ++
T Consensus 83 va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCC
Confidence 88999 888887765 36789999999999888776422 012456789999 5677766653 68
Q ss_pred eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-Cce
Q 035500 506 CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDINT-EKP 568 (606)
Q Consensus 506 tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt-~k~ 568 (606)
+|.++|..+. +.+.++..... ..+.|.+ ..+++.+.||++.+.++.+ ++.
T Consensus 161 ~VsVID~~t~----------~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 161 AVGVVDLEGK----------AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp EEEEEETTTT----------EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred eEEEEECCCC----------cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 9999999983 44555543221 1223444 6777888899999999986 554
No 388
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.69 E-value=0.057 Score=54.14 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|+|..+.+.++...++.|...|.. ++....+.+.+ ....-+|++.+ ++.++++.-.++.+.++++..... .
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~-i 104 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE-V 104 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe-e
Confidence 77899999555566678889999999998 88888776644 34588899986 445556655677888888876421 0
Q ss_pred ccccCCcceEEe-----ecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC---CCceeEEEc------CCCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-----YDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN---TEKPLQLFT------DMHREPINVAKF 585 (606)
Q Consensus 520 ~~l~~~~~i~t~-----~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr---t~k~v~~l~------~gH~~~I~sV~f 585 (606)
.. .....+ ........++|.|.++.++++.......+|.+. .+..+..+. ..+...+..+++
T Consensus 105 ~~----~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 105 KI----LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp EE----EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred ee----eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 00 001111 122337899999998766666554444444443 112223221 123456789999
Q ss_pred eCCCCeEEEEEeCCCeE
Q 035500 586 SHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 586 sP~g~~LLaTgS~DgtI 602 (606)
+|...++++.+.....+
T Consensus 181 dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRAL 197 (255)
T ss_dssp ETTTTEEEEEETTTTEE
T ss_pred cCCCCeEEEEECCCCeE
Confidence 99988888877776654
No 389
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.69 E-value=0.021 Score=65.60 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=88.0
Q ss_pred eeEEEEc-CCCCCEEEEEeC-CC----cEEEEECCCC-ceEE-EEeccCCCCCEEEEEEeeCCCCEEEEEECC-----Ce
Q 035500 440 PRQFEYN-PSNPSLMAFGTL-DG----EVIVINHENG-NVAC-YIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-----GC 506 (606)
Q Consensus 440 V~slafs-P~dg~~LaSGs~-DG----tVrIWDi~tg-~~v~-~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-----gt 506 (606)
+...+|| | ||+++|.+.. +| +|+++|+.++ +.+. .+. . ...+++|+|+ +..|+..+.| ..
T Consensus 176 ~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~---~~~~~~WspD-g~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 176 VMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--G---TNGEIVWGPD-HTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--E---ECSCCEECSS-TTEEEEEEECTTCCEEE
T ss_pred EeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--C---ceeeEEEecC-CCEEEEEEECCCCCCCE
Confidence 6678899 9 9998886543 23 5999999988 6321 111 1 1346789994 4556555554 25
Q ss_pred EEEEeCCCCCCCcccccCCcceEEeec--CCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCc-ee--EEEcCCCCC
Q 035500 507 VRLFDLNHIPPKVADARGNSSVATYYD--FEQLTSVHVNSTDDQFLASGY---SKNVALYDINTEK-PL--QLFTDMHRE 578 (606)
Q Consensus 507 IklWDl~~~~~~~~~l~~~~~i~t~~~--~~~V~sV~~sp~g~~LaSgs~---Dg~I~IWDlrt~k-~v--~~l~~gH~~ 578 (606)
|..|++.+.. ......+.. .....++.|+|+|++++..+. ...|.++|+.++. .. ..+......
T Consensus 249 v~~~~lgt~~--------~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 249 VWRHVMGKLQ--------SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp EEEEETTSCG--------GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred EEEEECCCCc--------hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 7777776531 112233332 233678899999997765542 3568889998763 23 444323455
Q ss_pred CeEEEEEeCCCCeEEEEEeCC
Q 035500 579 PINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 579 ~I~sV~fsP~g~~LLaTgS~D 599 (606)
..+++.|+. +..++..+..+
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~ 340 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEG 340 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTT
T ss_pred ceEEEeeee-CCEEEEEeCCC
Confidence 667776654 45555555544
No 390
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.68 E-value=0.0017 Score=66.70 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=81.3
Q ss_pred HHHHHHHHhhccceEEEccCccccchHHHhhccCCC-ceeEEEccccchhccc--ccccccccc-EEecccCCCcccccc
Q 035500 90 YIMSLMHAIDQKLRVVDLSNITLRNDNLLDLCQVGS-SCHVLILRATNIRKLN--MVGRFMHLN-TLSLDFCSSLASLHE 165 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~~l~-tl~l~~~~~~~~~~~ 165 (606)
.....++..-.+|+.++|.++. ...+.+-+..|. +=+.|+|.+| +..++ .|..+.+|+ +|.|. + +|+.|++
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~-~-~l~~I~~ 290 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP-A-SVTAIEF 290 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC-T-TCCEECT
T ss_pred HHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc-c-cceEEch
Confidence 3445566667899999999853 334444444444 6678999887 77776 456677788 88887 4 9999999
Q ss_pred cccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 166 DCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 166 ~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
++|..+++|+.|.+.+|+|..+- -.|...+++|++|.+
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 99999999999999888888773 246777888887753
No 391
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.58 E-value=0.034 Score=62.00 Aligned_cols=138 Identities=16% Similarity=0.060 Sum_probs=85.6
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeccCCC-----------CCE--------------------------EEEEEeeCC
Q 035500 452 LMAFGTLDGEVIVINHENGNVACYIPSIGGT-----------NSV--------------------------LGLCWLKKY 494 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-----------~~V--------------------------~~L~fsp~~ 494 (606)
.++.++.+|.+.++|.++|+.+...+..... .++ ..++++|+
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~- 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE- 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC-
Confidence 6778999999999999999988766542200 111 13466763
Q ss_pred CCEEEEEE-------------------------------------CCCeEEEEeCCCCCCCcccccCCcceEEeecCCCe
Q 035500 495 PSKLVAGS-------------------------------------DSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQL 537 (606)
Q Consensus 495 ~~~LaSgS-------------------------------------~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V 537 (606)
..+++..+ .+|.|..||..+++ .+-.+....++
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~----------~~W~~~~~~~~ 466 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK----------AKWTKWEKFAA 466 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC----------EEEEEEESSCC
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC----------EEEEecCCCCc
Confidence 34555443 34677778877642 22222222222
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 538 TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 538 ~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
.+......+..++.++.|+.++.||.++++.+..++.++...-..+.+..++..++++.+..+
T Consensus 467 ~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~~ 529 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVG 529 (571)
T ss_dssp CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCCC
Confidence 222223346778889999999999999999998888543222233456677775555554443
No 392
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.55 E-value=0.29 Score=51.66 Aligned_cols=151 Identities=9% Similarity=-0.051 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-...+.|+.+++... .....+. .......++++.+.++.+.++-+..+.|.+.++...
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 6788999955555555566788999998652 1222221 234567899998755566666677889998888762
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-C-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-Y-SKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .......|++.|.+..++.+. . .+.|...++.......... ..-...+.++++|.+..|
T Consensus 192 ----------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 192 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ----------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEE
T ss_pred ----------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCEE
Confidence 1222222 334578999999766544443 3 4788888887544333333 233567899999988888
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-+....|.
T Consensus 261 Y~aD~~~~~I~ 271 (400)
T 3p5b_L 261 YWVDSKLHSIS 271 (400)
T ss_dssp EEEETTTTEEE
T ss_pred EEEECCCCEEE
Confidence 77766655554
No 393
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.52 E-value=0.064 Score=57.58 Aligned_cols=153 Identities=8% Similarity=0.011 Sum_probs=93.6
Q ss_pred ceeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC---Ce-EEEEeCC
Q 035500 439 RPRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS---GC-VRLFDLN 513 (606)
Q Consensus 439 rV~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D---gt-IklWDl~ 513 (606)
.+..++|+|. +...|..+...+.|+.+|..++...... +......+++|+++ +.++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~---~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT---TNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC---CCCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee---cCCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECC
Confidence 3678899983 2344555544489999999877765433 33456899999984 4555554321 12 2222221
Q ss_pred CCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCeEEEEEeCCCCe
Q 035500 514 HIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYSKNVALYDINTEKP-LQLFTDMHREPINVAKFSHHSPL 591 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~~gH~~~I~sV~fsP~g~~ 591 (606)
.. ......+........++++| ++.++++-..++.|+.+|..++.. ...+..+....-..++|+|++.+
T Consensus 216 ~~---------~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 216 SG---------FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp GT---------TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred CC---------eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 11 00011222233456788999 667777777778999999987766 23333222233457999999998
Q ss_pred EEEEEeCCCeEEE
Q 035500 592 CLLLLHLTTMSRC 604 (606)
Q Consensus 592 LLaTgS~DgtIRc 604 (606)
++++-.....|+.
T Consensus 287 LYvad~~~~~I~~ 299 (433)
T 4hw6_A 287 AYIIYNGKHCIYR 299 (433)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEE
Confidence 8888777666653
No 394
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.51 E-value=0.0039 Score=65.98 Aligned_cols=90 Identities=14% Similarity=-0.035 Sum_probs=66.9
Q ss_pred cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE----------CCCeEEEEeCCCCCCCcccccCCcceEE
Q 035500 461 EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS----------DSGCVRLFDLNHIPPKVADARGNSSVAT 530 (606)
Q Consensus 461 tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS----------~DgtIklWDl~~~~~~~~~l~~~~~i~t 530 (606)
+|.++|..+++.+..+.. |.. + ++.++|+ +..++.+. .+++|.+||..+. ..+.+
T Consensus 47 ~vsvID~~t~~v~~~i~v-G~~-P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~----------~vv~~ 111 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-AFL-S--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTF----------LPIAD 111 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CTT-C--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTC----------CEEEE
T ss_pred eEEEEECCCCeEEEEEeC-CCC-C--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCC----------CEEEE
Confidence 889999999999998874 433 4 7999995 45555554 4789999999984 34555
Q ss_pred eecC--------CCeEEEEEccCCCEEEEEeC--CCcEEE--EECCC
Q 035500 531 YYDF--------EQLTSVHVNSTDDQFLASGY--SKNVAL--YDINT 565 (606)
Q Consensus 531 ~~~~--------~~V~sV~~sp~g~~LaSgs~--Dg~I~I--WDlrt 565 (606)
+... ..-..+.++|+|++++.+.. +..+.+ +|+.+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 5422 22457889999998887764 467888 99987
No 395
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.44 E-value=0.0013 Score=62.66 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=65.1
Q ss_pred CCCceeEEEccccchhcc--ccccccccccEEecccCCCcccccccccccC----ccccEEEcccc-cccchhhhhHHhh
Q 035500 123 VGSSCHVLILRATNIRKL--NMVGRFMHLNTLSLDFCSSLASLHEDCFSCM----PYLMCLSMCET-RIVNLWTTTAAIS 195 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l--~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~----p~l~~l~~~~~-~~~~l~~~~~~l~ 195 (606)
.++.=+.|||+++.|..- ..+..+++|++|+|.+|..||--.-.-.+.+ |+|+.|.+.++ +|++ ..+++|.
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALH 136 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGG
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHh
Confidence 455567788887776553 3456899999999999999987543334444 68999999885 5876 3568899
Q ss_pred cCCchhhhhhceec
Q 035500 196 KLPYLMELRFQMCL 209 (606)
Q Consensus 196 ~~~~l~~l~~~~~~ 209 (606)
++|+|++|.+..|+
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 99999999988876
No 396
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.38 E-value=0.065 Score=59.89 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|.|.-||..+++. +=......++..-.....+.+++.|+.|+.++.||.++|+.+..++.+......-+
T Consensus 465 ~G~l~A~D~~tG~~----------~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~ 534 (582)
T 1flg_A 465 VGSLRAMDPVSGKV----------VWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI 534 (582)
T ss_dssp SEEEEEECTTTCCE----------EEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cceEEEEECCCCCE----------EEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCce
Confidence 56777888777421 11122222222111122467888899999999999999999998884332222336
Q ss_pred EEeCCCCeEEEEEe
Q 035500 584 KFSHHSPLCLLLLH 597 (606)
Q Consensus 584 ~fsP~g~~LLaTgS 597 (606)
.|..+|+..+++.+
T Consensus 535 ~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 535 TWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEc
Confidence 77777775555443
No 397
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=96.28 E-value=0.046 Score=58.91 Aligned_cols=119 Identities=10% Similarity=0.144 Sum_probs=81.2
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCceE--EEEeccC--------CCCCEEEEEEeeCCCCEEEEEE---------C
Q 035500 443 FEYNPSNPSLMAFGTLDGEVIVINHENGNVA--CYIPSIG--------GTNSVLGLCWLKKYPSKLVAGS---------D 503 (606)
Q Consensus 443 lafsP~dg~~LaSGs~DGtVrIWDi~tg~~v--~~~~~~g--------H~~~V~~L~fsp~~~~~LaSgS---------~ 503 (606)
+.|.| ++..++..+..|+|.+.|...+... ..+.... .......++++|++...+++.. .
T Consensus 270 ~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 270 PAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp CEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred eeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 35788 7777777778899999998654432 1111100 0111223688885444444432 1
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCC-EEEEEe-CCCcEEEEECCCCceeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDD-QFLASG-YSKNVALYDINTEKPLQLF 572 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSgs-~Dg~I~IWDlrt~k~v~~l 572 (606)
+++|.+.|..+ .+.+.++.......++.|+|+++ +++++. .++.|.++|+.+.+.+..+
T Consensus 349 s~~VsVID~~T----------~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 349 SRFVVVLNAET----------GERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEETTT----------CCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCC----------CeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999988 34566666555688999999998 888887 5899999999999999887
No 398
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.10 E-value=0.0065 Score=68.06 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=96.9
Q ss_pred eEEEEcCCCCCEEEEEeCCC--------------------------------------cEEEEECCC--Cce-EEEEecc
Q 035500 441 RQFEYNPSNPSLMAFGTLDG--------------------------------------EVIVINHEN--GNV-ACYIPSI 479 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~DG--------------------------------------tVrIWDi~t--g~~-v~~~~~~ 479 (606)
.-++++| +++++++.+.+. .|.|.|..+ ++. +.+++.
T Consensus 198 d~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv- 275 (595)
T 1fwx_A 198 DNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI- 275 (595)
T ss_dssp CCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-
T ss_pred cceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-
Confidence 3457888 888888888654 477778776 444 444432
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc-cccCC-cceEEeecCCCeEEEEEccCCCEEEEEeCCCc
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA-DARGN-SSVATYYDFEQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~-~l~~~-~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+ ....++.++|++...++++..+.+|.++|+.+...... .+... ..+....-...-..++|+|+|....+.--|++
T Consensus 276 g--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsq 353 (595)
T 1fwx_A 276 A--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ 353 (595)
T ss_dssp E--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred C--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCc
Confidence 2 24678999995433456666889999999986310000 00001 12223333445788999999955556677899
Q ss_pred EEEEECCC----------CceeEEEcCCCCCCe-----EEEEEeCCCCeEEEEEeC
Q 035500 558 VALYDINT----------EKPLQLFTDMHREPI-----NVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 558 I~IWDlrt----------~k~v~~l~~gH~~~I-----~sV~fsP~g~~LLaTgS~ 598 (606)
|..||+.+ .+.+..+. .|..+- ..+.++|+|++++++...
T Consensus 354 V~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 354 VVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEEEEhhHhhhhhcccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCC
Confidence 99999987 45667777 343322 123457999998877543
No 399
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.05 E-value=0.1 Score=58.37 Aligned_cols=141 Identities=6% Similarity=0.018 Sum_probs=98.5
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEE------------------CCCeE
Q 035500 449 NPSLMAFGT-LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGS------------------DSGCV 507 (606)
Q Consensus 449 dg~~LaSGs-~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS------------------~DgtI 507 (606)
||+++.... .+++|.+.|+.+.+....+.. .......++++. | ++.+++.++ .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-p~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC-CCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 566666554 467799999999998875543 333458899984 6 567777774 34578
Q ss_pred EEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCC-------------------------------
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSK------------------------------- 556 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg------------------------------- 556 (606)
.+.|..+. ..+.+..-...-..++++|+|+++++++.+.
T Consensus 178 tvID~~t~----------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 178 TAVDADKW----------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEETTTT----------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCC----------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 88888873 2333333222345677899999888887553
Q ss_pred -------cEEEEECCC--Cce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 557 -------NVALYDINT--EKP-LQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 557 -------~I~IWDlrt--~k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
.|.+.|.++ ++. +..++. ......+.++|+|+++++++..+.+|.
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~Vs 302 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVT 302 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence 588899988 555 556653 235568999999999999988887764
No 400
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.04 E-value=0.4 Score=49.06 Aligned_cols=151 Identities=6% Similarity=-0.024 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE-EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA-CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v-~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++|++.++.+..+-...+.|..++...+... ..+. ..-....++++.+.++.++++-+..+.|.+++.....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-- 112 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 112 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--
Confidence 5678999856666666667889999998765321 1111 1223467888887555666676778899999987621
Q ss_pred cccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
..... ........+++.|.+..++.+. ..+.|...++.......... ..-..-+.++|+|++..++.+
T Consensus 113 --------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 113 --------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp --------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEE
T ss_pred --------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEE
Confidence 11112 2334578999999766554443 35788888886433222222 223456899999988888877
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-+..+.|.
T Consensus 184 D~~~~~I~ 191 (318)
T 3sov_A 184 DAKLNFIH 191 (318)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 66666554
No 401
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.89 E-value=0.055 Score=61.41 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 504 SGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 504 DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
+|.|.-||..+++ .+=......+.....+...+.+++.++.|+.++.||.++++.+..++.+..-.-.-+
T Consensus 437 ~g~l~A~D~~tG~----------~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~ 506 (668)
T 1kv9_A 437 SGALLAWDPVKQK----------AAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPM 506 (668)
T ss_dssp EEEEEEEETTTTE----------EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cceEEEEeCCCCc----------EEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCce
Confidence 4778888888742 222222333333333455688999999999999999999999988874321111334
Q ss_pred EEeCCCCeEEEEEe
Q 035500 584 KFSHHSPLCLLLLH 597 (606)
Q Consensus 584 ~fsP~g~~LLaTgS 597 (606)
.+..+|...++.++
T Consensus 507 ~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 507 TFELAGRQYVAIMA 520 (668)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 55556664454444
No 402
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.88 E-value=0.13 Score=52.73 Aligned_cols=132 Identities=8% Similarity=0.009 Sum_probs=86.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
+..+..++.+|.+..+|..+|+....... .....+... +..++.++.++.+..+|..+++ ..-
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~----------~~w 301 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKREL----GSVNDFIVD---GNRIYLVDQNDRVMALTIDGGV----------TLW 301 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECC----CCEEEEEEE---TTEEEEEETTCCEEEEETTTCC----------EEE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccC----CCCCCceEE---CCEEEEEcCCCeEEEEECCCCc----------EEE
Confidence 45788888999999999999998876542 234444433 3578888999999999998753 111
Q ss_pred Eee-c-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEE-EEEeCCCCeEEEEEeCCCeEEE
Q 035500 530 TYY-D-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINV-AKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 530 t~~-~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~s-V~fsP~g~~LLaTgS~DgtIRc 604 (606)
... . ...+..... .+..++.++.+|.+..+|.++++.+..... ....+.. ... . +.. +..++.||.+.+
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~-~~~~~~~~~~~-~-~~~-l~v~~~~G~l~~ 373 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV-DSSGFQTEPVA-A-DGK-LLIQAKDGTVYS 373 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CTTCBCSCCEE-E-TTE-EEEEBTTSCEEE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCcceeCCEE-E-CCE-EEEEeCCCEEEE
Confidence 222 1 111222222 267888899999999999999998877763 2233322 222 2 333 556777887754
No 403
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.85 E-value=0.15 Score=57.88 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=96.7
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEeccCCC-------CCEEEEEEeeCCC
Q 035500 442 QFEYNPSNPSLMAFGTLDGE-------------------VIVINHENGNVACYIPSIGGT-------NSVLGLCWLKKYP 495 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGt-------------------VrIWDi~tg~~v~~~~~~gH~-------~~V~~L~fsp~~~ 495 (606)
.++++| +.++++.++.++. |..+|..+|+.+..++...|. .+........ ++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G 311 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DG 311 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TT
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CC
Confidence 467888 6678888887764 999999999999988765453 2332222222 22
Q ss_pred C---EEEEEECCCeEEEEeCCCCCCCcc------ccc------CCcceE------------Eeec---CCCeEEEEEccC
Q 035500 496 S---KLVAGSDSGCVRLFDLNHIPPKVA------DAR------GNSSVA------------TYYD---FEQLTSVHVNST 545 (606)
Q Consensus 496 ~---~LaSgS~DgtIklWDl~~~~~~~~------~l~------~~~~i~------------t~~~---~~~V~sV~~sp~ 545 (606)
. .++.++.+|.+.++|..+++.... ++. ...++. .+.. ...-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 2 588899999999999888643100 000 000100 0000 000123677777
Q ss_pred CCEEEEE------------------------------------eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCC
Q 035500 546 DDQFLAS------------------------------------GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHS 589 (606)
Q Consensus 546 g~~LaSg------------------------------------s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g 589 (606)
..+++.. ..+|.|.-||+.+++.+...+. ........+...+
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~g 469 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAG 469 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETT
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCC
Confidence 6655532 1247899999999999877763 2333334444556
Q ss_pred CeEEEEEeCCCeEEE
Q 035500 590 PLCLLLLHLTTMSRC 604 (606)
Q Consensus 590 ~~LLaTgS~DgtIRc 604 (606)
. ++..++.|+.+++
T Consensus 470 g-~vf~g~~dg~l~a 483 (668)
T 1kv9_A 470 N-LVFQGTAAGQMHA 483 (668)
T ss_dssp T-EEEEECTTSEEEE
T ss_pred C-EEEEECCcccchh
Confidence 6 4566788998875
No 404
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.80 E-value=0.25 Score=54.27 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=95.8
Q ss_pred eeEEEEcCC-CCCEEEEEeCCCcEEEEECCCCceEEEEecc-CCCCCEEEEEE-------eeCCCCEEEEEECCC-----
Q 035500 440 PRQFEYNPS-NPSLMAFGTLDGEVIVINHENGNVACYIPSI-GGTNSVLGLCW-------LKKYPSKLVAGSDSG----- 505 (606)
Q Consensus 440 V~slafsP~-dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~-gH~~~V~~L~f-------sp~~~~~LaSgS~Dg----- 505 (606)
+..|+|+|. +++++++-...+.|++.|.+++......... +.......++| ++ ++..|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCccc
Confidence 567899994 4556666555678999999987776544321 12335899999 88 455555555443
Q ss_pred --eEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCC-CEEEEEeCCCcEEEEECC-------CCce-------
Q 035500 506 --CVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTD-DQFLASGYSKNVALYDIN-------TEKP------- 568 (606)
Q Consensus 506 --tIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlr-------t~k~------- 568 (606)
.|.+.+...... .........+..+ .....++++|++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~-~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGT-FDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSC-CSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCc-eeecccceeeccC---CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255565332111 0000000122222 234577889954 566677778899999997 5543
Q ss_pred ----e-EEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 569 ----L-QLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 569 ----v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. ..+..+....-+.++|+|++..++++-+....|+-
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 1 22332234456799999999977777666666653
No 405
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.78 E-value=0.075 Score=52.78 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+.++.+.+ ++.+. .|+ +.|..|| .+++...... .....+.++...+ + ..+..++.++.+..+|...
T Consensus 179 ~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~--~~~~~~~~~~~~~-~-g~l~v~t~~~gl~~~~~~g----- 244 (330)
T 3hxj_A 179 TSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY--AGYWTVTRPAISE-D-GTIYVTSLDGHLYAINPDG----- 244 (330)
T ss_dssp CSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC--CSSCCCSCCEECT-T-SCEEEEETTTEEEEECTTS-----
T ss_pred eeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc--cCCcceeceEECC-C-CeEEEEcCCCeEEEECCCC-----
Confidence 44455665 66544 444 7799999 7777665544 3345577777765 3 3577788888888887433
Q ss_pred ccccCCcceEEeecCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 520 ADARGNSSVATYYDFE-QLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~-~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
..+..+.... .+.++...+++ .+..++.++.+..+|. +++.+..+. .....+.++...+++. +..|+.
T Consensus 245 ------~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~--l~~gt~ 313 (330)
T 3hxj_A 245 ------TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT--IYFGTR 313 (330)
T ss_dssp ------CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC--EEEECT
T ss_pred ------CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE--EEEEcC
Confidence 1222333222 23444454444 5566777889999996 677776666 3456677788877776 445788
Q ss_pred CCeEEE
Q 035500 599 TTMSRC 604 (606)
Q Consensus 599 DgtIRc 604 (606)
+|.+++
T Consensus 314 ~G~~~~ 319 (330)
T 3hxj_A 314 NGKFYA 319 (330)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 888765
No 406
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.78 E-value=0.087 Score=52.34 Aligned_cols=130 Identities=9% Similarity=0.066 Sum_probs=84.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceE
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVA 529 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~ 529 (606)
...+..|+.+|.|..+|.. ++...... .+...+.++...+ + ..++.++.++.|..||.. +. ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~--~~~~~~~~~~~~~-~-g~l~vgt~~~~l~~~d~~-g~----------~~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFK--TKKAIYATPIVSE-D-GTIYVGSNDNYLYAINPD-GT----------EKW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEE--CSSCCCSCCEECT-T-SCEEEECTTSEEEEECTT-SC----------EEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEc--CCCceeeeeEEcC-C-CEEEEEcCCCEEEEECCC-CC----------EeE
Confidence 3577788889999999988 77665544 3333455555554 3 347778888999999987 32 122
Q ss_pred Eeec-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 530 TYYD-FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 530 t~~~-~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+.. ...+.++...+++.+++++ +.+..|| .+++...... .....+.++...+++. +++ ++.++.+
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v-~t~~~gl 237 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT-IYV-TSLDGHL 237 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC-EEE-EETTTEE
T ss_pred EEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCe-EEE-EcCCCeE
Confidence 2222 3336666666667755544 8899999 7777776666 3556788888888775 444 4444433
No 407
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.70 E-value=0.83 Score=45.64 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-C-eEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-G-CVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-g-tIklWDl~~~~~ 517 (606)
+..++|+| +++++++-..+++|..||... .....+.. .....++++.+ ++.++++.... + .|..+|...+..
T Consensus 34 pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 34 LENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred cceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeE
Confidence 66789999 888777777899999999875 33333332 24588999998 45655554433 2 355566554311
Q ss_pred CcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eEEEc--------CCCCCCeEEEEEeCC
Q 035500 518 KVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKP-LQLFT--------DMHREPINVAKFSHH 588 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~-v~~l~--------~gH~~~I~sV~fsP~ 588 (606)
..+...........++..+.+..+++-..++.|..+|..+++. +.... .+.-...+.+ +|+
T Consensus 108 --------~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 108 --------ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp --------EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred --------EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 1111111112234555544444555555678999999876532 21110 0111234555 788
Q ss_pred CCeEEEEEeCCCeEE
Q 035500 589 SPLCLLLLHLTTMSR 603 (606)
Q Consensus 589 g~~LLaTgS~DgtIR 603 (606)
+.+++++-+..+.|.
T Consensus 178 g~~lyv~d~~~~~I~ 192 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLL 192 (306)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCEEE
Confidence 888888877776664
No 408
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.69 E-value=0.28 Score=50.16 Aligned_cols=111 Identities=10% Similarity=0.006 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEeccCC-------CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNVACYIPSIGG-------TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH-------~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
.+..+.+++.+|.|..||.++|+.......... ...+.+.... .+..++.++.++.|..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~----- 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGT----- 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCC-----
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCC-----
Confidence 346888888999999999999999877664221 1223222222 23678889999999999998753
Q ss_pred ccCCcceEEeecCCCe-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 522 ARGNSSVATYYDFEQL-TSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 522 l~~~~~i~t~~~~~~V-~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.+-.......+ ...... +..++.++.++.+..+|.++++.+....
T Consensus 125 -----~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 125 -----VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp -----EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence 12122222111 111121 5678888899999999999999887776
No 409
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.68 E-value=0.19 Score=57.73 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=86.0
Q ss_pred eEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCce--EEEEeccCCCCCEEEEEEeeCCCCEEEEEE---CCCeEEEE
Q 035500 441 RQFEYNPSNPSLMAFGTLD-----GEVIVINHENGNV--ACYIPSIGGTNSVLGLCWLKKYPSKLVAGS---DSGCVRLF 510 (606)
Q Consensus 441 ~slafsP~dg~~LaSGs~D-----GtVrIWDi~tg~~--v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS---~DgtIklW 510 (606)
..++|+| |++.|+....| ..|+++++.++.. ...+.. .+.....++.|+| ++.+|+..+ ....|.++
T Consensus 224 ~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 224 GEIVWGP-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp SCCEECS-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEE
T ss_pred eeEEEec-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCCceEEEEEECC-CCCEEEEEecCCCCceEEEE
Confidence 4578999 88888777765 3688888877642 222221 2234567889999 556655444 23467778
Q ss_pred eCCCCCCCcccccCCcc-eEEee--cCCCeEEEEEccCCCEEEEEeCC----CcEEEEECCCC-ceeE-EEcCCCCCCeE
Q 035500 511 DLNHIPPKVADARGNSS-VATYY--DFEQLTSVHVNSTDDQFLASGYS----KNVALYDINTE-KPLQ-LFTDMHREPIN 581 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~-i~t~~--~~~~V~sV~~sp~g~~LaSgs~D----g~I~IWDlrt~-k~v~-~l~~gH~~~I~ 581 (606)
|+..+.. .. +..+. ......++.|+..+.+++.+..+ ..|..+|+.++ +... .+. |...+.
T Consensus 301 d~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~ 370 (751)
T 2xe4_A 301 DLRKGNA--------HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVF 370 (751)
T ss_dssp ESSSCTT--------CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEE
T ss_pred ECCCCCC--------CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcE
Confidence 8876311 11 02222 13445667666544455555443 36777777653 2222 333 444333
Q ss_pred EEEEeCCCCeEEEEEeCCCeEEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
--.+.+.+.+++++...|+..+.
T Consensus 371 l~~~~~~~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 371 MESIAVRSNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEEEECSSEEEEEEEETTEEEE
T ss_pred EEEEEEECCEEEEEEEeCCEEEE
Confidence 33344557788888888886654
No 410
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.68 E-value=0.0075 Score=56.99 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=83.1
Q ss_pred cCccceeeeccCCCc-ccchhHHHHHHHHh--hccceEEEccCccccchHHHhhcc---CCCceeEEEccccchhc----
Q 035500 70 SFDIEAVDILSKRPC-FLKEEYIMSLMHAI--DQKLRVVDLSNITLRNDNLLDLCQ---VGSSCHVLILRATNIRK---- 139 (606)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---- 139 (606)
...+..+|+ +.| .+..+-+..+..++ |..|++++|+++.+|.+-...|++ ..-.=+.|+|++|+|..
T Consensus 35 ~~~L~~L~L---~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNL---NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp CTTCCEEEC---TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCCCEEEe---cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345666776 456 77777776666654 688999999999998877665543 23344679999999887
Q ss_pred --cccccccccccEEec--ccCCCcccccc----cccccCccccEEEcccccccch
Q 035500 140 --LNMVGRFMHLNTLSL--DFCSSLASLHE----DCFSCMPYLMCLSMCETRIVNL 187 (606)
Q Consensus 140 --l~~~~~~~~l~tl~l--~~~~~~~~~~~----~~~~~~p~l~~l~~~~~~~~~l 187 (606)
.+.+..-..|++|+| . .|.|+.-.. ..+...++|+.|.|.+|.|..-
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 345556678999999 6 788886432 2345569999999999988644
No 411
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.64 E-value=0.012 Score=64.70 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=31.0
Q ss_pred cccccEEecccCCCccccccccc-ccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCF-SCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~-~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
+++|++|+|. ++.|+...-..+ ..+|+|+.|.+.+|++.. +.-.+.+.++|+|++|.+++|.
T Consensus 455 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD-KALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEE-SCCSSHHHHHHHHHHCTTCCEEEEESCSCCH-HHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeecc-CCCCcHHHHHHHHhcCCCcCEEECcCCCCcH-HHHHHHHHhCCCCCEEeeeCCC
Confidence 4556666666 344543322222 446666666666666521 1111223346666666666654
No 412
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.64 E-value=1 Score=46.35 Aligned_cols=148 Identities=3% Similarity=-0.092 Sum_probs=92.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++++..+++..+-...+.|.+++........... ..-....+++++|.++.++++-... +.|...++....
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 193 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-- 193 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence 56788988566666666778899999987543322222 3345678999998665556665555 788888876521
Q ss_pred cccccCCcceEEe-e-cCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATY-Y-DFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~-~-~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
...+ . .-..-+.++++|++..++ +-+..+.|..+|+........+. ........+++. +..++.+
T Consensus 194 ---------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav~--~~~ly~t 261 (349)
T 3v64_C 194 ---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF--EDSLYWT 261 (349)
T ss_dssp ---------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEE--TTEEEEE
T ss_pred ---------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CCCCCceEEEEE--CCEEEEe
Confidence 1111 1 223468999998776554 44556889999987543333333 233456677773 3456666
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-...+.|.
T Consensus 262 d~~~~~V~ 269 (349)
T 3v64_C 262 DWHTKSIN 269 (349)
T ss_dssp ETTTTEEE
T ss_pred cCCCCeEE
Confidence 65555543
No 413
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.56 E-value=0.7 Score=53.56 Aligned_cols=151 Identities=9% Similarity=-0.049 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCC----ceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENG----NVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg----~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+-...+.|+.+++... .....+. .......+|++.+.++.++++-+..+.|.+.++...
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 6678999856656666667788999998742 2222221 234456788888755566677778889999998762
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEe-CC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASG-YS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs-~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
....... .-.....|++.|.+..|+.+. .. +.|...++........+. ..-...+.|++++.+..|
T Consensus 504 ----------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 504 ----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp ----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTEE
T ss_pred ----------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCeE
Confidence 1112222 334578999999865444443 33 788888887544433333 334578899999888877
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+.+-.....|.
T Consensus 573 YwaD~~~~~I~ 583 (791)
T 3m0c_C 573 YWVDSKLHSIS 583 (791)
T ss_dssp EEEETTTTEEE
T ss_pred EEEeCCCCcEE
Confidence 77765555543
No 414
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.50 E-value=0.22 Score=55.93 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=38.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 545 TDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 545 ~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.+.+++.++.|+.++.||.++|+.+..++.+......-+.|..+|+..+++.+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 46788889999999999999999998887433333344666667765455443
No 415
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.49 E-value=0.8 Score=47.93 Aligned_cols=149 Identities=3% Similarity=-0.096 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..++++|..+.+.++-...+.|.+.+.........+. ..-....+++++|.++.++++-... +.|...+.....
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 236 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-- 236 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--
Confidence 45678888566666666677889998887443322222 3345678999998665555555555 778888776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFL-ASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~La-Sgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-..-+.|+|+|++..|+ +-+..+.|..+|+........+. ........+++. +..++.+.
T Consensus 237 --------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav~--~~~ly~td 305 (386)
T 3v65_B 237 --------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF--EDSLYWTD 305 (386)
T ss_dssp --------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEEE--TTEEEEEE
T ss_pred --------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEEE--CCEEEEee
Confidence 111111 223468999998766544 44566889999987543333333 233456677773 34567776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
...+.|.
T Consensus 306 ~~~~~V~ 312 (386)
T 3v65_B 306 WHTKSIN 312 (386)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 6655553
No 416
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.47 E-value=0.51 Score=47.36 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=90.5
Q ss_pred eeEEEEcCCCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTL-----------------DGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-----------------DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSg 501 (606)
+..+++.|.++++.++-.. +|.|..||..+++....... -....+++|+| ++. ++++-
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~-dg~~lyv~d 203 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE---LHVPGGAEVSA-DSSFVLVAE 203 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE---ESCCCEEEECT-TSSEEEEEE
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC---CccCcceEECC-CCCEEEEEe
Confidence 6678888745566655432 47799999877765432221 12356799998 445 44555
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeE
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGY----------SKNVALYDINTEKPLQ 570 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~----------Dg~I~IWDlrt~k~v~ 570 (606)
+..+.|..|++..... .....+. ... ...+++.++|+++++... .+.|..+|.. ++.+.
T Consensus 204 ~~~~~I~~~~~~~~~~--------~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~ 273 (322)
T 2fp8_A 204 FLSHQIVKYWLEGPKK--------GTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE 273 (322)
T ss_dssp GGGTEEEEEESSSTTT--------TCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE
T ss_pred CCCCeEEEEECCCCcC--------CccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEE
Confidence 6778999999875311 0111111 122 678899999997777654 4678888874 77766
Q ss_pred EEcCCC---CCCeEEEEEeCCCCeEEEEEeCCCeE
Q 035500 571 LFTDMH---REPINVAKFSHHSPLCLLLLHLTTMS 602 (606)
Q Consensus 571 ~l~~gH---~~~I~sV~fsP~g~~LLaTgS~DgtI 602 (606)
.+.... -..++.+++. +..+++++...+.|
T Consensus 274 ~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 274 VIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSV 306 (322)
T ss_dssp EEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEE
T ss_pred EEECCCCCccccceEEEEe--CCEEEEeecCCCce
Confidence 665321 2456777773 34577776555544
No 417
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.41 E-value=2.3 Score=42.87 Aligned_cols=149 Identities=6% Similarity=-0.021 Sum_probs=90.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++++..+++.++-...+.|.+++........... ..-....+++++|.++.++++.... +.|...++...
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--- 153 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 153 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---
Confidence 66788987455566666778999999987543332222 2334678999998555445554333 67887777652
Q ss_pred cccccCCcceEEee--cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEE
Q 035500 519 VADARGNSSVATYY--DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 519 ~~~l~~~~~i~t~~--~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLa 594 (606)
....+. .-...+.+++.|++..++.+ +..+.|..+|+........... +.-.....+++. +.+++.
T Consensus 154 --------~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~ 223 (316)
T 1ijq_A 154 --------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 223 (316)
T ss_dssp --------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred --------CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence 112221 22347899999887655544 5568999999974332222221 122345677774 345677
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
+....+.|.
T Consensus 224 ~d~~~~~V~ 232 (316)
T 1ijq_A 224 TDIINEAIF 232 (316)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 766555553
No 418
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.32 E-value=0.64 Score=46.48 Aligned_cols=139 Identities=6% Similarity=-0.002 Sum_probs=85.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEEEe-------ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q 035500 449 NPSLMAFGTLDGEVIVINHENGNV-ACYIP-------SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 449 dg~~LaSGs~DGtVrIWDi~tg~~-v~~~~-------~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~ 520 (606)
++..+++-..+|.|.++|..+++. +.... ..+.-....++ +|++..++++-+..+.|..+|+.....
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~--- 201 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK--- 201 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---
Confidence 444455555689999999876532 11000 01112245666 664444566667788999999875211
Q ss_pred cccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE--EEcCCCCCCeEEEEEe---CCCCeEEEE
Q 035500 521 DARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQ--LFTDMHREPINVAKFS---HHSPLCLLL 595 (606)
Q Consensus 521 ~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~--~l~~gH~~~I~sV~fs---P~g~~LLaT 595 (606)
+ .....+........+++.++|+++++....+.|..+|.. ++... .+. ......++++|. |++..++++
T Consensus 202 -~---~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 202 -P---GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -B---CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -C---CccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccCCCCEEEEE
Confidence 0 011122212335678889999988887778999999986 65532 233 123568999998 898888887
Q ss_pred EeC
Q 035500 596 LHL 598 (606)
Q Consensus 596 gS~ 598 (606)
.+.
T Consensus 276 ~~~ 278 (306)
T 2p4o_A 276 TNG 278 (306)
T ss_dssp ECT
T ss_pred CCC
Confidence 764
No 419
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.21 E-value=0.72 Score=49.33 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=97.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++++|.++.+.++-..++.|+.+|..++.....+...+....-..++|+|++..++++-...+.|..++........
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 55678999677777777778999999998777632222223233345799999543356666778899998876421100
Q ss_pred ccccCCcceEEeec----------------CCCeEEEEE---------ccCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 035500 520 ADARGNSSVATYYD----------------FEQLTSVHV---------NSTDDQFLASGYSKNVALYDINTEKPLQLFTD 574 (606)
Q Consensus 520 ~~l~~~~~i~t~~~----------------~~~V~sV~~---------sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~ 574 (606)
. ....+.+ -..-..+++ .+.++++++-...+.|+.+|. .+........
T Consensus 310 ~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~ 382 (433)
T 4hw6_A 310 A------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGR 382 (433)
T ss_dssp C------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECC
T ss_pred C------cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeC
Confidence 0 0001100 122567888 566677777777889999985 4543332211
Q ss_pred CC----------------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 575 MH----------------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 575 gH----------------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
+. -..-..|+++|....++++-.....||.
T Consensus 383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 10 1236789999655567887777777764
No 420
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.20 E-value=0.28 Score=54.71 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=39.1
Q ss_pred CcEEEEECCCCceEEEEeccCCC--------CCEEEEEEeeCCC---CEEEEEECCCeEEEEeCCCCC
Q 035500 460 GEVIVINHENGNVACYIPSIGGT--------NSVLGLCWLKKYP---SKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH~--------~~V~~L~fsp~~~---~~LaSgS~DgtIklWDl~~~~ 516 (606)
+.|.-+|..+|+.+..++...|. .++. +.....++ ..++.++.+|.+.++|..+++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 68999999999999988765553 1221 11110133 368889999999999988754
No 421
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.14 E-value=0.99 Score=46.91 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=93.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC----CC--CCEEEEEE---eeCCCCEEEEEE--------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG----GT--NSVLGLCW---LKKYPSKLVAGS-------- 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g----H~--~~V~~L~f---sp~~~~~LaSgS-------- 502 (606)
+.+.+|++.++.+.++.-..|+|..||...+..... ...+ .. ..+.+|.| .|. +.+++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccc
Confidence 556789985555555554899999999976654433 2212 11 13689999 574 45555432
Q ss_pred -----CCCeEEEEeCC---CCCCCcccccCCcceEEee----c-------C-CCeEEEEEccCCCEEEEEeCC-CcEEEE
Q 035500 503 -----DSGCVRLFDLN---HIPPKVADARGNSSVATYY----D-------F-EQLTSVHVNSTDDQFLASGYS-KNVALY 561 (606)
Q Consensus 503 -----~DgtIklWDl~---~~~~~~~~l~~~~~i~t~~----~-------~-~~V~sV~~sp~g~~LaSgs~D-g~I~IW 561 (606)
.+..+..+|+. +++. .-...+. . . ....+++.-++|+..++++.- +.|...
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~--------~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKP--------VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCC--------SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCE--------EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 26789999988 4321 0011111 0 1 237899999999999998887 777777
Q ss_pred ECCCCceeEEE-cC---CCCCCeEEEEEeCCCCeEEEEEeCCCe
Q 035500 562 DINTEKPLQLF-TD---MHREPINVAKFSHHSPLCLLLLHLTTM 601 (606)
Q Consensus 562 Dlrt~k~v~~l-~~---gH~~~I~sV~fsP~g~~LLaTgS~Dgt 601 (606)
|........-. .. ...-..+.|+++|++..|++..+ ++.
T Consensus 165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~ 207 (334)
T 2p9w_A 165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRA 207 (334)
T ss_dssp CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSS
T ss_pred eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCe
Confidence 76643222111 11 12234679999999997777666 553
No 422
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.81 E-value=0.66 Score=51.46 Aligned_cols=139 Identities=11% Similarity=-0.012 Sum_probs=80.2
Q ss_pred cEEEEECCCCceEEEEeccCCC--------CCEEEEEEeeCCC---CEEEEEECCCeEEEEeCCCCCCCcc-cccC----
Q 035500 461 EVIVINHENGNVACYIPSIGGT--------NSVLGLCWLKKYP---SKLVAGSDSGCVRLFDLNHIPPKVA-DARG---- 524 (606)
Q Consensus 461 tVrIWDi~tg~~v~~~~~~gH~--------~~V~~L~fsp~~~---~~LaSgS~DgtIklWDl~~~~~~~~-~l~~---- 524 (606)
.|..+|..+|+.+..++...|. .++. +...+ ++ ..++.++.+|.+.++|..+++..-. ....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 5999999999999888765442 2221 11122 33 2467788999999999887542100 0000
Q ss_pred --------CcceE--------------Eee---cCCCeEEEEEccCCCEEEEEe--------------------------
Q 035500 525 --------NSSVA--------------TYY---DFEQLTSVHVNSTDDQFLASG-------------------------- 553 (606)
Q Consensus 525 --------~~~i~--------------t~~---~~~~V~sV~~sp~g~~LaSgs-------------------------- 553 (606)
..|+. ... +...-..++++|+..+++..+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 01110 000 000013467788777666553
Q ss_pred -----------CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 554 -----------YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 554 -----------~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.++.|..||+.+++.+..++. ...+....+...+.. +..++.|+.+++
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~-v~~g~~dg~l~a 489 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGL-VWYATLDGYLKA 489 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTE-EEEECTTSEEEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCE-EEEEcCCCeEEE
Confidence 347899999999999877763 223333333334554 445788888775
No 423
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.81 E-value=2.4 Score=47.67 Aligned_cols=150 Identities=5% Similarity=-0.033 Sum_probs=98.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-..++.|+.+++........+. .......++++.+.++.+.++-+..+.|.+.++....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 67899999666666666678999999987544433332 1223567888887555566666777889999887631
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..... ..-..-.+|++.|....++-+. ..+.|...++.......... .-...+.+++++.+..++.+-
T Consensus 114 -------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 114 -------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp -------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTEEEEEE
T ss_pred -------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCEEEEEE
Confidence 11112 2334468999999765444443 35778888887544433333 345678999999888787776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+..+.|.
T Consensus 185 ~~~~~I~ 191 (628)
T 4a0p_A 185 LDTNLIE 191 (628)
T ss_dssp TTTTEEE
T ss_pred CCCCEEE
Confidence 6666554
No 424
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.57 E-value=0.026 Score=61.96 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=7.5
Q ss_pred hhhhccCCCCCCC
Q 035500 264 MELSSCLSPNLNG 276 (606)
Q Consensus 264 ~~~l~~~~~~~~~ 276 (606)
+..|+.|++.+|.
T Consensus 288 ~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 288 CSRLTTLNLSYAT 300 (594)
T ss_dssp HTTCCEEECTTCC
T ss_pred hCCCCEEEccCCC
Confidence 3456666666555
No 425
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.50 E-value=0.022 Score=58.29 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=59.9
Q ss_pred CceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCcccc-EEEcccccccchhhhhHHhhcCCchh
Q 035500 125 SSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLM-CLSMCETRIVNLWTTTAAISKLPYLM 201 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~-~l~~~~~~~~~l~~~~~~l~~~~~l~ 201 (606)
.+=+.|+|++|++..+. .+..+.+|++|.|. .| |+.|++++|..+++|+ .|.+.+ +|..+ .-.|...+++|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~-~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I--~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP-HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI--EFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECC-TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE--CTTTTTTCTTEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECC-cc-cceehHHHhhCChhccEEEEEcc-cceEE--chhhhhCCccCC
Confidence 34577999988888887 56778889999888 44 9999999999999998 999977 56544 225777788888
Q ss_pred hhhh
Q 035500 202 ELRF 205 (606)
Q Consensus 202 ~l~~ 205 (606)
+|.+
T Consensus 301 ~l~l 304 (329)
T 3sb4_A 301 YVLA 304 (329)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8874
No 426
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.47 E-value=3.4 Score=47.13 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=94.9
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc------CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI------GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDL 512 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~------gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl 512 (606)
.|.++...+ ++++. .|+.+|-|..||..++......... -....|.++...+ ++..|..|+.++-+..||.
T Consensus 358 ~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SEEEEEECT-TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred eeEEEEECC-CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 378888887 77655 5777766999998877654432110 1235789998875 4453777888788999998
Q ss_pred CCCCCCcccccCCcceEEee------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCCCCCeE
Q 035500 513 NHIPPKVADARGNSSVATYY------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT-----DMHREPIN 581 (606)
Q Consensus 513 ~~~~~~~~~l~~~~~i~t~~------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~-----~gH~~~I~ 581 (606)
.++. ...+. ....|.++...++|.+.+.+. +-+..||..+++...... ..+...|+
T Consensus 435 ~~~~-----------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 435 NSGQ-----------VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp TTCC-----------EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CCCc-----------EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 7632 22222 134589998888788666554 458999988765432211 01246799
Q ss_pred EEEEeCCCCeEEEEEeCCCeEE
Q 035500 582 VAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 582 sV~fsP~g~~LLaTgS~DgtIR 603 (606)
++...++|. +.+.+. +|..+
T Consensus 502 ~i~~d~~g~-lWigt~-~Gl~~ 521 (795)
T 4a2l_A 502 TLFRDSHKR-LWIGGE-EGLSV 521 (795)
T ss_dssp EEEECTTCC-EEEEES-SCEEE
T ss_pred EEEECCCCC-EEEEeC-CceEE
Confidence 999998887 444443 56544
No 427
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.40 E-value=1.8 Score=45.34 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCCEEEEEe-------------CCCcEEEEECCC--CceEEEEeccC-----CCCCEEEEEEeeC-CC-CE
Q 035500 440 PRQFEYNPSNPSLMAFGT-------------LDGEVIVINHEN--GNVACYIPSIG-----GTNSVLGLCWLKK-YP-SK 497 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-------------~DGtVrIWDi~t--g~~v~~~~~~g-----H~~~V~~L~fsp~-~~-~~ 497 (606)
+-.+++.| +| ++.+++ .+|.|.++|..+ ++. ..+...+ ..-...++.+.++ ++ .+
T Consensus 52 ~EDi~~~~-~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 52 SEDLEILP-NG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCEEEECT-TS-EEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred cceeEEcC-CC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34566777 66 444444 799999999873 332 2233333 2346788888763 22 23
Q ss_pred EEEE-EC--CCeEEEEeCCCCCCCcccccCCcceEEeecC--CCeEEEEEccCCCEEEEEeC-----------------C
Q 035500 498 LVAG-SD--SGCVRLFDLNHIPPKVADARGNSSVATYYDF--EQLTSVHVNSTDDQFLASGY-----------------S 555 (606)
Q Consensus 498 LaSg-S~--DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~--~~V~sV~~sp~g~~LaSgs~-----------------D 555 (606)
|+.+ .. +.+|.+|++...... ...+.++.+. ...+++.+.++|.+.++... .
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCE------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc
Confidence 4444 33 568888888763211 1233445442 34899999999987777641 2
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEeCCCeEE
Q 035500 556 KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 556 g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~DgtIR 603 (606)
|.|.-||. ++...... .-..-+.++|+|+++.++++-+..+.|.
T Consensus 203 g~vyr~d~--~~~~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~ 246 (355)
T 3sre_A 203 SFVTYYSP--NDVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIH 246 (355)
T ss_dssp EEEEEECT--TCCEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred cEEEEEEC--CeEEEeec--CCcccCcceECCCCCEEEEEeCCCCeEE
Confidence 45555555 33222222 2356789999999999888887776664
No 428
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.38 E-value=3.6 Score=43.21 Aligned_cols=150 Identities=6% Similarity=-0.036 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD-SGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~-DgtIklWDl~~~~~~ 518 (606)
+..+++.+..+++.++-...+.|.+.+.........+. ..-....+|+++|.++.++++-.. .+.|...++....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-- 236 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-- 236 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--
Confidence 66788988566666666778899999987554433332 233457899999855444554422 4678888776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
...... .-...+.|++.+++..++.+ +..+.|..+|+........... +.-.....+++ ++..++.+
T Consensus 237 --------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt 306 (400)
T 3p5b_L 237 --------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 306 (400)
T ss_dssp --------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE
T ss_pred --------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe
Confidence 111222 22457899999887765555 4568899999875433222221 12234456665 34456666
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
....+.|.
T Consensus 307 d~~~~~V~ 314 (400)
T 3p5b_L 307 DIINEAIF 314 (400)
T ss_dssp ESSSCSEE
T ss_pred cCCCCeEE
Confidence 65555443
No 429
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.33 E-value=0.077 Score=55.82 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=75.3
Q ss_pred CCCchhHHH-HhhhcCcCccceeeecc-CCCcccchhHHHHHHHHhh--ccceEEEccCccccchHHHhhccCCCceeEE
Q 035500 55 NADIYPLID-VFTEMDSFDIEAVDILS-KRPCFLKEEYIMSLMHAID--QKLRVVDLSNITLRNDNLLDLCQVGSSCHVL 130 (606)
Q Consensus 55 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (606)
+.++..+++ .+..++++.|.++.+-. +-+-.--++.+-.|.+++- .+||.+.|.++.++...+.- |+
T Consensus 90 ~~~~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~-------~~-- 160 (362)
T 2ra8_A 90 AEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW-------IE-- 160 (362)
T ss_dssp HHTTCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGG-------CB--
T ss_pred cccHHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhccccc-------cc--
Confidence 345555666 56688888899988832 2110001233333444342 37888888775432111100 10
Q ss_pred EccccchhccccccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhh--cCCchhhhhhce
Q 035500 131 ILRATNIRKLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAIS--KLPYLMELRFQM 207 (606)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~--~~~~l~~l~~~~ 207 (606)
...+. ..+..+++|+.|.|..+..+ +++. +. +|+|++|.+..+.+.. ..+.+|. +||+|++|.++.
T Consensus 161 ---~~~L~--~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~--~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 161 ---QVDLS--PVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp ---CCBCH--HHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCH--HHHHHHHHSBCTTCCEEEEEC
T ss_pred ---ccCHH--HHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCCh--HHHHHHHHccCCCCcEEEEec
Confidence 00111 24456788999998744223 3433 33 8999999998887653 4445554 789999988653
No 430
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.31 E-value=4 Score=41.49 Aligned_cols=149 Identities=3% Similarity=-0.097 Sum_probs=88.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEE-ECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAG-SDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSg-S~DgtIklWDl~~~~~~ 518 (606)
+..+++.+..+++..+-...+.|.+++........... .......++++.|.++.++.+- +..+.|...+.....
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 156 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-- 156 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence 56788988566666666678899999987543322221 3345678999998554444443 235777777776521
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
...... .-..-+.++++|++..++.+ +..+.|..+|+.......... +.......+++. +..++.+-
T Consensus 157 --------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~--~~~lywtd 225 (318)
T 3sov_A 157 --------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLF--EDILYWTD 225 (318)
T ss_dssp --------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEE--TTEEEEEE
T ss_pred --------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEe--CCEEEEEe
Confidence 111111 22346899999977655544 566889999987433322222 233455667764 33566665
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
...+.|.
T Consensus 226 ~~~~~V~ 232 (318)
T 3sov_A 226 WSTHSIL 232 (318)
T ss_dssp TTTTEEE
T ss_pred cCCCeEE
Confidence 5555443
No 431
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.27 E-value=0.02 Score=60.29 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=50.8
Q ss_pred ccceEEEccCccccchHHHhhccC-CCceeEEEccc--cc------hhccc---cccccccccEEecccCCCcccc-ccc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQV-GSSCHVLILRA--TN------IRKLN---MVGRFMHLNTLSLDFCSSLASL-HED 166 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~------~~~l~---~~~~~~~l~tl~l~~~~~~~~~-~~~ 166 (606)
.+||.++|..+.+..+.++.|++. -.+=+.|+|+. +. ++.|. ..+.|++|.+|.|. ++.|+.- ..-
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~-~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV-DAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE-SCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC-CCCCchHHHHH
Confidence 355555555555555666666542 22334466542 11 11111 11346677777776 4554421 111
Q ss_pred cc--ccCccccEEEcccccccchh--hhhHHhhcCCchhhhhhce
Q 035500 167 CF--SCMPYLMCLSMCETRIVNLW--TTTAAISKLPYLMELRFQM 207 (606)
Q Consensus 167 ~~--~~~p~l~~l~~~~~~~~~l~--~~~~~l~~~~~l~~l~~~~ 207 (606)
.+ ..||+|+.|.+..|.+.+-= .-...|..|++|++|.+..
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 12 25677777777666655420 0011234456666666543
No 432
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.20 E-value=3.6 Score=44.26 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=90.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEeccC--CCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcc--ccc
Q 035500 448 SNPSLMAFGTLDGEVIVINHENGNVACYIPSIG--GTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVA--DAR 523 (606)
Q Consensus 448 ~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g--H~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~--~l~ 523 (606)
.++.-++.+- ++.||.-++..+..-+.+.... --+.|..+..+| ++.+||..+ +.+|.|-.+..+..... ...
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3666666664 4778888877443333444322 123578899998 667776665 56899999884321111 000
Q ss_pred CCcceEEeec-------CCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCC--ceeEEEcC--------CCCCCeEEE
Q 035500 524 GNSSVATYYD-------FEQLTSVHVNSTD---DQFLASGYSKNVALYDINTE--KPLQLFTD--------MHREPINVA 583 (606)
Q Consensus 524 ~~~~i~t~~~-------~~~V~sV~~sp~g---~~LaSgs~Dg~I~IWDlrt~--k~v~~l~~--------gH~~~I~sV 583 (606)
.....+++.- ..+|..+.|||-+ ..+++-..|++|++||+... ++. .+.. .+...|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 1122344442 3569999999985 58999999999999999963 233 3331 123678899
Q ss_pred EEeCCCCeEEE
Q 035500 584 KFSHHSPLCLL 594 (606)
Q Consensus 584 ~fsP~g~~LLa 594 (606)
+|.+++-.+.+
T Consensus 186 ~Fg~~~lTLYv 196 (452)
T 3pbp_A 186 EFSKDGLTLYC 196 (452)
T ss_dssp EECTTSSCEEE
T ss_pred EEcCCCcEEEE
Confidence 99997765554
No 433
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.11 E-value=0.036 Score=60.86 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=62.5
Q ss_pred ccceEEEccCccccchHHHhhccCCCceeEEEcc----ccchhcc-------ccccccccccEEecccCCC-ccccc-cc
Q 035500 100 QKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILR----ATNIRKL-------NMVGRFMHLNTLSLDFCSS-LASLH-ED 166 (606)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l-------~~~~~~~~l~tl~l~~~~~-~~~~~-~~ 166 (606)
.+|+.++|..+.+....+..+++.-.+=+.|+|+ +|++... ..+..+++|++|.|.+|+. ++.-. +.
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 5677777766666666666665533344567774 4555432 1234567777777765442 33211 11
Q ss_pred ccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhceec
Q 035500 167 CFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQMCL 209 (606)
Q Consensus 167 ~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~~~~ 209 (606)
....+|+|+.|.+.+|++... .-.+-+..+++|++|.+.+|.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESCC
T ss_pred HHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCCC
Confidence 233477788888887776542 112234567778888776654
No 434
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.01 E-value=1.1 Score=50.03 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred EEEcCCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEeccCCCC--------CEEEEEEeeCCC---
Q 035500 443 FEYNPSNPSLMAFGTLD----------------GEVIVINHENGNVACYIPSIGGTN--------SVLGLCWLKKYP--- 495 (606)
Q Consensus 443 lafsP~dg~~LaSGs~D----------------GtVrIWDi~tg~~v~~~~~~gH~~--------~V~~L~fsp~~~--- 495 (606)
.++.+ ..+++..++.+ +.|.-+|..+|+.+..++...|.. ++. +.....++
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35666 55677777665 379999999999999888766532 222 12210133
Q ss_pred CEEEEEECCCeEEEEeCCCCC
Q 035500 496 SKLVAGSDSGCVRLFDLNHIP 516 (606)
Q Consensus 496 ~~LaSgS~DgtIklWDl~~~~ 516 (606)
..++.++.+|.+.+.|..+++
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 357778899999999988764
No 435
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.95 E-value=1.5 Score=47.31 Aligned_cols=111 Identities=15% Similarity=0.281 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc------CCCCCEEEEEEeeC---CCCEEEEEEC-------
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI------GGTNSVLGLCWLKK---YPSKLVAGSD------- 503 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~------gH~~~V~~L~fsp~---~~~~LaSgS~------- 503 (606)
++.++|.| +++++++-...+.|++++..++.......+. ...+...+|+|+|+ ++...++-+.
T Consensus 29 P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 29 PHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred ceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 78899999 8887776554457999987656543322211 12456889999985 4444444432
Q ss_pred -----CCeEEEEeCCCCCCCcccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEEeC
Q 035500 504 -----SGCVRLFDLNHIPPKVADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLASGY 554 (606)
Q Consensus 504 -----DgtIklWDl~~~~~~~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSgs~ 554 (606)
...|.-|+....... +.....+. .+. .......|.|.|+|.++++.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~---~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDT---LEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTE---EEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCC---cCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124444544321110 00011111 122 1234789999999998877664
No 436
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.86 E-value=3.6 Score=47.61 Aligned_cols=150 Identities=6% Similarity=-0.030 Sum_probs=90.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..|++.+..+++.++-...++|.+.++........+. ..-....+|+++|..+.++++-..+ +.|...++...
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 67789998555666677778999999987544333222 3344688999998555455544333 67888777652
Q ss_pred cccccCCcceEEeec-CCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYYD-FEQLTSVHVNSTDDQFLAS-GYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~-~~~V~sV~~sp~g~~LaSg-s~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
........ -...+.|++.+.+..|+.+ ...+.|...|+........+.. +.-.....|++ .+.+|+.+
T Consensus 548 -------~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwt 618 (791)
T 3m0c_C 548 -------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 618 (791)
T ss_dssp -------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEE
T ss_pred -------ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEE
Confidence 11122222 2457899999877655555 4557899999875444333331 11223445555 34466766
Q ss_pred EeCCCeEE
Q 035500 596 LHLTTMSR 603 (606)
Q Consensus 596 gS~DgtIR 603 (606)
-...+.|.
T Consensus 619 D~~~~~I~ 626 (791)
T 3m0c_C 619 DIINEAIF 626 (791)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 66555543
No 437
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.68 E-value=4.5 Score=45.28 Aligned_cols=152 Identities=7% Similarity=-0.026 Sum_probs=95.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+-...+.|+.++.........+. ..-....++++.+.++.+.++-+..+.|.+.++....
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--- 425 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--- 425 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---
Confidence 67899999666555565668899999987544333222 2234567888886555566666778899999887631
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCC-EEEEE-eCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDD-QFLAS-GYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~-~LaSg-s~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..+.....-....+|+++|... +++|- +..+.|.-.++..... ..+....-...+.+++++.+..|+.+=+
T Consensus 426 ------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 426 ------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp ------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred ------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 1111111335578999999754 44444 2336677777653332 2332233456788999988777777766
Q ss_pred CCCeEE
Q 035500 598 LTTMSR 603 (606)
Q Consensus 598 ~DgtIR 603 (606)
..+.|.
T Consensus 499 ~~~~I~ 504 (619)
T 3s94_A 499 KTDKIE 504 (619)
T ss_dssp TTTEEE
T ss_pred CCCEEE
Confidence 555553
No 438
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.63 E-value=0.084 Score=60.32 Aligned_cols=151 Identities=9% Similarity=-0.046 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCC----CceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHEN----GNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~t----g~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++..+.+.++-...+.|+.+++.. ......+. .......+|++.+.++.++++-...+.|.+++....
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 567789984444444445678999999875 12211111 111234567777545555666566788999987752
Q ss_pred CCCcccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeE
Q 035500 516 PPKVADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYS-KNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLC 592 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~D-g~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~L 592 (606)
. ...... .......|++.|.+. ++++-... +.|..+++........+. ..-...+.|+|+|++..|
T Consensus 486 ~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 486 K----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp C----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCCE
T ss_pred c----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCEE
Confidence 1 111122 123357888998765 44443333 778888776433222222 122445679999988878
Q ss_pred EEEEeCCCeEE
Q 035500 593 LLLLHLTTMSR 603 (606)
Q Consensus 593 LaTgS~DgtIR 603 (606)
+++-+..+.|.
T Consensus 555 Y~aD~~~~~I~ 565 (699)
T 1n7d_A 555 YWVDSKLHSIS 565 (699)
T ss_dssp EEEETTTTEEE
T ss_pred EEEecCCCeEE
Confidence 87776666554
No 439
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.63 E-value=1.7 Score=45.24 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=79.7
Q ss_pred ceeEEEE---cCCCCCEEEEEe-------------CCCcEEEEECC---CCceEEEEeccCCC-----------CCEEEE
Q 035500 439 RPRQFEY---NPSNPSLMAFGT-------------LDGEVIVINHE---NGNVACYIPSIGGT-----------NSVLGL 488 (606)
Q Consensus 439 rV~slaf---sP~dg~~LaSGs-------------~DGtVrIWDi~---tg~~v~~~~~~gH~-----------~~V~~L 488 (606)
.+..+.| .| ++.++++.. .++.|..||+. +++.+....+.+.. ....++
T Consensus 64 ~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 3678899 68 577777544 26889999999 88887766543211 247789
Q ss_pred EEeeCCCCEEEEEECC-CeEEEEeCCCCCCCcccccCCcceEEee--c-----CCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 489 CWLKKYPSKLVAGSDS-GCVRLFDLNHIPPKVADARGNSSVATYY--D-----FEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 489 ~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~~~~l~~~~~i~t~~--~-----~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
+..+ .++..++++.- +.|...+.... .+..+. . ....+.|+++|++.++++....|.+.-
T Consensus 143 avD~-~GnaYVt~s~~~~~I~rV~pdG~-----------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 143 AQDR-DGNSYVAFALGMPAIARVSADGK-----------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp EECT-TSCEEEEEEESSCEEEEECTTSC-----------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred EECC-CCCEEEeCCCCCCeEEEEeCCCC-----------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 9998 56777888877 77655555441 112111 1 122679999999998888866999999
Q ss_pred EECCCC
Q 035500 561 YDINTE 566 (606)
Q Consensus 561 WDlrt~ 566 (606)
+|+++.
T Consensus 211 fD~~~p 216 (334)
T 2p9w_A 211 FDVSKP 216 (334)
T ss_dssp EECSSS
T ss_pred EcCCCC
Confidence 999843
No 440
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.61 E-value=0.049 Score=51.62 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=55.5
Q ss_pred cceEEEccCccccchHHHhhccCCCceeEEEccccc-hhc--cccccc----cccccEEecccCCCcccccccccccCcc
Q 035500 101 KLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATN-IRK--LNMVGR----FMHLNTLSLDFCSSLASLHEDCFSCMPY 173 (606)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--l~~~~~----~~~l~tl~l~~~~~~~~~~~~~~~~~p~ 173 (606)
+|+.+||++......-++.|. .=-.=+.|+|+... |.. |..+.. -++|+.|+|..|..||.-.-.....||+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455555555544444444442 11122345555432 221 111222 2479999999999999755455667899
Q ss_pred ccEEEcccc-cccchhhhhHHhhc-CCch
Q 035500 174 LMCLSMCET-RIVNLWTTTAAISK-LPYL 200 (606)
Q Consensus 174 l~~l~~~~~-~~~~l~~~~~~l~~-~~~l 200 (606)
|+.|.+.+. +|++.=-++..|.+ ||.+
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 999999886 47664333444433 5554
No 441
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.52 E-value=5.1 Score=44.84 Aligned_cols=152 Identities=6% Similarity=-0.020 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..++|++.++.+..+=...+.|..++.........+. ...-....++++.+.++.++++-+..+.|.+.+.....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--- 117 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 117 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC---
Confidence 66789999555555555557889999987543211111 12234688999998555566676778899999988631
Q ss_pred ccccCCcceEEe-ecCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATY-YDFEQLTSVHVNSTDDQFLASG--YSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~-~~~~~V~sV~~sp~g~~LaSgs--~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
..... ..-....+|++.|.+..++-+. ..+.|...++.......... ..-...+.+++++.+..++.+-
T Consensus 118 -------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 118 -------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp -------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEE
T ss_pred -------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCEEEEEe
Confidence 11112 2234467899999865444443 24667777776433333332 2345678999999888787776
Q ss_pred eCCCeEE
Q 035500 597 HLTTMSR 603 (606)
Q Consensus 597 S~DgtIR 603 (606)
+....|.
T Consensus 190 ~~~~~I~ 196 (619)
T 3s94_A 190 AKLNFIH 196 (619)
T ss_dssp TTTCCEE
T ss_pred CCCCeEE
Confidence 6665554
No 442
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.34 E-value=1.2 Score=47.99 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=76.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc------------eEEEEeccC----CCCCEEEEEEeeCC--CCEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN------------VACYIPSIG----GTNSVLGLCWLKKY--PSKLVAG 501 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~------------~v~~~~~~g----H~~~V~~L~fsp~~--~~~LaSg 501 (606)
++.+..+| +|+++|..+ +.+|.|-.+..+. ...++.... ...+|..+.|+|.. +..|+.-
T Consensus 68 i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 68 TFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred eeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 66788999 999999886 5579998876321 112333211 35679999999953 4589999
Q ss_pred ECCCeEEEEeCCCCCCCcccccCCcceEEeec---CCCeEEEEEccCCCEEEEE--eCCCcEEE
Q 035500 502 SDSGCVRLFDLNHIPPKVADARGNSSVATYYD---FEQLTSVHVNSTDDQFLAS--GYSKNVAL 560 (606)
Q Consensus 502 S~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~---~~~V~sV~~sp~g~~LaSg--s~Dg~I~I 560 (606)
..|++|++||+.........+..... .+.. ...|.+++|.+++=.+... +..|.|+-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~--~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNN--SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCS--EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhcccc--ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99999999999873221111211111 2221 1458999999877555553 46777764
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.31 E-value=0.081 Score=47.24 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=43.5
Q ss_pred EEEccccchh--ccccccccccccEEecccCCCcccccccccccCccccEEEcccccc
Q 035500 129 VLILRATNIR--KLNMVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRI 184 (606)
Q Consensus 129 ~~~~~~~~~~--~l~~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 184 (606)
++|.+++.+. .+.- +-..+|.+|.|. +|.|+.|+++-|..||+|+.|.|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLT-GNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECC-CCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777665 4441 124479999999 9999999999999999999999998854
No 444
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.12 E-value=3.5 Score=43.74 Aligned_cols=156 Identities=6% Similarity=-0.014 Sum_probs=94.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCC-EEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPS-KLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~-~LaSgS~DgtIklWDl~~~~~~ 518 (606)
+..++++|.++.++++-..++.|..|+...+........ +......+++|+|+ ++ ++++-...+.|..++.......
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~~~~~ 305 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDWKTKR 305 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCccccc
Confidence 556789997777777777889999999987654333222 22345779999994 56 5666677889999887642110
Q ss_pred cccccCCcceEEeec----------------CCCeE-EEEEc--------cCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 035500 519 VADARGNSSVATYYD----------------FEQLT-SVHVN--------STDDQFLASGYSKNVALYDINTEKPLQLFT 573 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~----------------~~~V~-sV~~s--------p~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~ 573 (606)
.. .+.++.+ ...-. .+... +++.++++=...+.|+.+|. .++......
T Consensus 306 ~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g 378 (430)
T 3tc9_A 306 LT------TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAG 378 (430)
T ss_dssp EC------CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEE
T ss_pred cc------ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEe
Confidence 00 0011110 01122 45553 23556666666788999884 454433332
Q ss_pred C------C----------CCCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 574 D------M----------HREPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 574 ~------g----------H~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
. + .-..-+.++++|++..++++-.....||-
T Consensus 379 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 379 RGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp CCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 1 0 01247899999976678888777777763
No 445
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.97 E-value=7.4 Score=43.62 Aligned_cols=152 Identities=9% Similarity=-0.003 Sum_probs=93.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec--c--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS--I--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHI 515 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~--~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~ 515 (606)
+..++|++.++.+..+=...+.|+.++.........+.. . .....+.++++...+..+.++-+..+.|.+.++...
T Consensus 342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~ 421 (628)
T 4a0p_A 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR 421 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC
Confidence 678999995555555555678899898764333222221 0 123468899998755556667778889999888652
Q ss_pred CCCcccccCCcceEEe-e-cCCCeEEEEEccC-CCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCC
Q 035500 516 PPKVADARGNSSVATY-Y-DFEQLTSVHVNST-DDQFLASGYSK--NVALYDINTEKPLQLFTDMHREPINVAKFSHHSP 590 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~-~-~~~~V~sV~~sp~-g~~LaSgs~Dg--~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~ 590 (606)
...++ . .-....+|+++|. |.++.|-.... .|...++.......... ..-...+.+++++.+.
T Consensus 422 -----------~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~-~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 422 -----------SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF-SGLSKPIALALDSRLG 489 (628)
T ss_dssp -----------EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTT
T ss_pred -----------eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEe-ccCCCccEEEEeCCCC
Confidence 11222 2 3355899999995 55555543333 56666665333322233 2345678899999887
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
.|+.+-+..+.|.
T Consensus 490 ~LYw~D~~~~~I~ 502 (628)
T 4a0p_A 490 KLFWADSDLRRIE 502 (628)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEeCCCCEEE
Confidence 7777666555554
No 446
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=92.94 E-value=4.5 Score=46.04 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEecc--CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSI--GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~--gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
|.++...+ +++++-.|+.++-+..||..+++........ .+...|.++...+ ++. |..|+.+ -+..||..+..
T Consensus 408 v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lwigt~~-Gl~~~~~~~~~- 482 (795)
T 4a2l_A 408 IKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGN-LWLGTLS-ALVRFNPEQRS- 482 (795)
T ss_dssp EEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSC-EEEEESS-CEEEEETTTTE-
T ss_pred EEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCC-EEEEecC-ceeEEeCCCCe-
Confidence 77888887 7774667777777999999887654432100 1245788988776 334 4455554 47888876531
Q ss_pred CcccccCCcceEEee--------cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEc------CCCCCCeEEE
Q 035500 518 KVADARGNSSVATYY--------DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFT------DMHREPINVA 583 (606)
Q Consensus 518 ~~~~l~~~~~i~t~~--------~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~------~gH~~~I~sV 583 (606)
...+. ....|.++...++|.+.+.+. +-+..||..+++. .+. ..+...|.++
T Consensus 483 ----------~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i 548 (795)
T 4a2l_A 483 ----------FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCI 548 (795)
T ss_dssp ----------EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEE
T ss_pred ----------EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEE
Confidence 11111 124588998888888766554 5688999887665 222 0134679999
Q ss_pred EEeCCCCeEEEEEeCCCeEE
Q 035500 584 KFSHHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~DgtIR 603 (606)
...++|. +.+++. .|..+
T Consensus 549 ~~d~~g~-lWigT~-~Gl~~ 566 (795)
T 4a2l_A 549 YEASNGI-IWVGTR-EGFYC 566 (795)
T ss_dssp EECTTSC-EEEEES-SCEEE
T ss_pred EECCCCC-EEEEeC-CCcee
Confidence 9988887 344433 36655
No 447
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.69 E-value=5.9 Score=41.22 Aligned_cols=153 Identities=8% Similarity=0.071 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec----cCCCCCEEEEEEeeC---CCCEEEEEE--CCCeEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS----IGGTNSVLGLCWLKK---YPSKLVAGS--DSGCVRLF 510 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~----~gH~~~V~~L~fsp~---~~~~LaSgS--~DgtIklW 510 (606)
++.++|.| ++.++++--..|+|++++...++....... ....+...+|+++|+ ++...++-+ .++.|.-|
T Consensus 34 P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 34 PWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 78999999 888777765589999998766654322111 123456899999984 333333323 34455555
Q ss_pred eCCCCCCCcccccCCcceE-Eee--cCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEECCCC----c---
Q 035500 511 DLNHIPPKVADARGNSSVA-TYY--DFEQLTSVHVNSTDDQFLASGY-------------SKNVALYDINTE----K--- 567 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~-t~~--~~~~V~sV~~sp~g~~LaSgs~-------------Dg~I~IWDlrt~----k--- 567 (606)
...........+.....+. .+. ....-..|.|.|+|.++++.++ -|.|.-.+.... .
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 5544211000111111121 121 1223567999999998887653 245544455422 0
Q ss_pred eeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 568 PLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 568 ~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
....+..+|.+ ...++|+|++. ++++
T Consensus 193 ~~~i~a~G~RN-p~Gla~dp~G~-L~~~ 218 (347)
T 3das_A 193 GSPVYSYGHRN-VQGLAWDDKQR-LFAS 218 (347)
T ss_dssp TCCEEEBCCSB-CCEEEECTTCC-EEEE
T ss_pred CCeEEeeCCCC-cceEEECCCCC-EEEE
Confidence 12244446643 45899999876 5554
No 448
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.38 E-value=4 Score=42.67 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=89.2
Q ss_pred CCcEEEEEC--CCCceEEEEecc----CCC-CCEEEEEE--eeCCCC-EEEEEECCCeEEEEeCCCCCCCcccccCCcce
Q 035500 459 DGEVIVINH--ENGNVACYIPSI----GGT-NSVLGLCW--LKKYPS-KLVAGSDSGCVRLFDLNHIPPKVADARGNSSV 528 (606)
Q Consensus 459 DGtVrIWDi--~tg~~v~~~~~~----gH~-~~V~~L~f--sp~~~~-~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i 528 (606)
+++|.+|++ .++. +..+... +.. ..++++|. +|..+. +++....+|.+..|++....... . ....+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~-~~~lV 173 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--I-SGKKV 173 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--E-EEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--c-cceEE
Confidence 578999966 4444 3333110 111 56788888 554443 57888889999999985421100 0 13457
Q ss_pred EEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-----CCceeEEEcCCCC-CCeEEEEE--eCCCC-eEEEEEeCC
Q 035500 529 ATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDIN-----TEKPLQLFTDMHR-EPINVAKF--SHHSP-LCLLLLHLT 599 (606)
Q Consensus 529 ~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlr-----t~k~v~~l~~gH~-~~I~sV~f--sP~g~-~LLaTgS~D 599 (606)
+++...+++..+...+....++.+-.+.-|--||.+ +++.+..+..+|- ..+-.+++ .+++. ++++++-.+
T Consensus 174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 788877889999999888999999998667667755 2345555533332 36788887 45555 777777455
Q ss_pred Ce
Q 035500 600 TM 601 (606)
Q Consensus 600 gt 601 (606)
.+
T Consensus 254 ~s 255 (355)
T 3amr_A 254 SS 255 (355)
T ss_dssp TE
T ss_pred CE
Confidence 33
No 449
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.04 E-value=2.8 Score=43.17 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=82.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec---cCCCCCEEEEEEeeC---CCCEEEEEECC-----CeEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS---IGGTNSVLGLCWLKK---YPSKLVAGSDS-----GCVR 508 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~---~gH~~~V~~L~fsp~---~~~~LaSgS~D-----gtIk 508 (606)
++.++|.| ++++++ +..+|.|++++ .+........ ........+++|+|+ ++...++-+.+ +.|.
T Consensus 33 P~~ia~~p-dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 33 PWALAFLP-DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEEECT-TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred ceEEEEcC-CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 78899999 887554 45679999998 4443221111 122456899999985 34444444433 5677
Q ss_pred EEeCCCCCCCcccccCCcceE-Eeec----CCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCC----
Q 035500 509 LFDLNHIPPKVADARGNSSVA-TYYD----FEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTE---- 566 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~-t~~~----~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~---- 566 (606)
.|+..... +.....+. .+.. ......++|.|+|.+.++.+.. +.|.-+|....
T Consensus 109 r~~~~~~~-----~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 109 RLRHLGER-----GVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEECSSC-----EEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEeCCCC-----cCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 77766421 00011111 1221 1124689999999877775432 45666665431
Q ss_pred --------ceeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 567 --------KPLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 567 --------k~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
.....+..+| ...+.++|+|+...++++-.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 1112233244 23567899994444565543
No 450
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.98 E-value=6.1 Score=39.90 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEC--CCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINH--ENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPP 517 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi--~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~ 517 (606)
+..+++.| ++.+++.+...+..+-+|- .+.+.+ . .+....+..+.+.+. + .++.++.+|.+.+++...+.
T Consensus 165 ~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~---~-~~~~~~~~~~~~~~~-g-~~~~~~~~G~~~~s~~D~G~- 236 (327)
T 2xbg_A 165 MRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPH---N-RTTSRRLHNMGFTPD-G-RLWMIVNGGKIAFSDPDNSE- 236 (327)
T ss_dssp EEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEE---E-CCSSSCEEEEEECTT-S-CEEEEETTTEEEEEETTEEE-
T ss_pred eEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeEC---C-CCCCCccceeEECCC-C-CEEEEeCCceEEEecCCCCC-
Confidence 56788988 7777766654443333442 222222 1 245567889998873 3 45566778888777422110
Q ss_pred CcccccCC-cceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcC--CCCCCeEEEEEeCCCCeEEE
Q 035500 518 KVADARGN-SSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTD--MHREPINVAKFSHHSPLCLL 594 (606)
Q Consensus 518 ~~~~l~~~-~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~--gH~~~I~sV~fsP~g~~LLa 594 (606)
.+... .+ .+.....+.++.+.+.+..++++. ++.+ ++....++.-..+.. .+...++.+.|.+++. +.
T Consensus 237 ---tW~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~ 307 (327)
T 2xbg_A 237 ---NWGELLSP--LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GF 307 (327)
T ss_dssp ---EECCCBCT--TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EE
T ss_pred ---eeEeccCC--cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eE
Confidence 01000 00 001123478899988777766654 5766 455555655444441 1346788999975543 44
Q ss_pred EEeCCCeEE
Q 035500 595 LLHLTTMSR 603 (606)
Q Consensus 595 TgS~DgtIR 603 (606)
.++.+|+|.
T Consensus 308 ~~G~~G~i~ 316 (327)
T 2xbg_A 308 ILGQKGILL 316 (327)
T ss_dssp EECSTTEEE
T ss_pred EEcCCceEE
Confidence 556677664
No 451
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.76 E-value=2.7 Score=43.41 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=82.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCc-eEEEEe-ccCCCCCEEEEEEeeC---CCCEEEEEEC---C----CeE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGN-VACYIP-SIGGTNSVLGLCWLKK---YPSKLVAGSD---S----GCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~-~v~~~~-~~gH~~~V~~L~fsp~---~~~~LaSgS~---D----gtI 507 (606)
++.++|.| ++++ ..+..+|.|+++| .+++ .+..+. .........+|+|+|+ ++...++-+. + ..|
T Consensus 31 P~~ia~~p-dG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 31 PWSIAPLG-GGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp EEEEEEEE-TTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CeEEEEcC-CCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 78899999 8864 4556679999997 4454 111111 1122356899999985 4444444442 3 566
Q ss_pred EEEeCCCCCCCcccccCCcce-EEeec--CCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCCc----
Q 035500 508 RLFDLNHIPPKVADARGNSSV-ATYYD--FEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTEK---- 567 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i-~t~~~--~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~k---- 567 (606)
..|+....... +.....+ ..+.. ......+.|.|+|.++++.+.. +.|.-+|....-
T Consensus 108 ~r~~~~~~~~~---~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFK---LKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEECSSSCC---EEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEECCCCcC---cCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 66776542100 0001111 11221 1224679999999877775532 455555554220
Q ss_pred ---eeEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 568 ---PLQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 568 ---~v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
....+..+|. ..+.++|+|+...++++-.
T Consensus 185 pf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 185 PFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp SSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 1123333453 3457999994444666543
No 452
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.68 E-value=0.55 Score=52.69 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=72.0
Q ss_pred EEEEcCCCCCEEEEEeCCC-----------cEEEEECCCCceEEEEec-cCCCCCEEEEEEeeCCCCEEEEEE-CCCeEE
Q 035500 442 QFEYNPSNPSLMAFGTLDG-----------EVIVINHENGNVACYIPS-IGGTNSVLGLCWLKKYPSKLVAGS-DSGCVR 508 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DG-----------tVrIWDi~tg~~v~~~~~-~gH~~~V~~L~fsp~~~~~LaSgS-~DgtIk 508 (606)
..++.|.++.+++.|+.++ .+.+||..+++....... ..+.....++++.+ ++.+++.|| .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 3456665778888888653 588999988765432221 12333344566665 567888888 455899
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEe-CC-----CcEEEEECCCCc
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASG-YS-----KNVALYDINTEK 567 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs-~D-----g~I~IWDlrt~k 567 (606)
+||..+.. |. .+..+.....-.++...+++.+++.|| .+ ..+.+||..+.+
T Consensus 269 ~yd~~t~~-----W~---~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 269 LYDSSSDS-----WI---PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEGGGTE-----EE---ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EecCcCCc-----ee---ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99987631 11 011111111123455667899999998 44 579999998764
No 453
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.31 E-value=3 Score=43.04 Aligned_cols=151 Identities=13% Similarity=0.035 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-----ccCCCCCEEEEEEeeC---CCCEEEEEEC-------C
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-----SIGGTNSVLGLCWLKK---YPSKLVAGSD-------S 504 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-----~~gH~~~V~~L~fsp~---~~~~LaSgS~-------D 504 (606)
++.++|.| +++.+..+...|.|++++.. +.....+. .....+...+++|+|+ ++...++-+. .
T Consensus 20 P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 78899999 88834455668999999853 33221111 0112346789999984 3444444333 2
Q ss_pred CeEEEEeCCCCCCCcccccCCcceE-Eee----cCCCeEEEEEccCCCEEEEEeCC-------------CcEEEEECCCC
Q 035500 505 GCVRLFDLNHIPPKVADARGNSSVA-TYY----DFEQLTSVHVNSTDDQFLASGYS-------------KNVALYDINTE 566 (606)
Q Consensus 505 gtIklWDl~~~~~~~~~l~~~~~i~-t~~----~~~~V~sV~~sp~g~~LaSgs~D-------------g~I~IWDlrt~ 566 (606)
..|.-|+......... ....+. .+. ....-..+.|.|+|.+.++.++. |.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2455566543211000 001111 111 11224679999999776666542 45766776532
Q ss_pred c------------eeEEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 567 K------------PLQLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 567 k------------~v~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
- ....+..+| .....++|+|....++++-
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence 1 222333345 3467899999444466553
No 454
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.26 E-value=0.15 Score=54.15 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=67.8
Q ss_pred hccceEEEccCccccchHHHhhccCCCceeEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccE
Q 035500 99 DQKLRVVDLSNITLRNDNLLDLCQVGSSCHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMC 176 (606)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~ 176 (606)
|.+|+.|+|.++ ...+.+-+..|-.=+.|+|.+ .+..++ .+..+.+|.+|.|. .|+|+.|+.++|.| .+|+.
T Consensus 134 ~~~L~~i~l~~~---i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~-~n~l~~I~~~aF~~-~~L~~ 207 (401)
T 4fdw_A 134 NSQIAKVVLNEG---LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS-KTKITKLPASTFVY-AGIEE 207 (401)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECT-TSCCSEECTTTTTT-CCCSE
T ss_pred cCCccEEEeCCC---ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecC-CCcceEechhhEee-cccCE
Confidence 457888888774 233333334443445677764 566665 45567889999998 88899999999986 88999
Q ss_pred EEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 177 LSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 177 l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
|.+-++ |..+ .-.|...+++|++|.|.
T Consensus 208 l~lp~~-l~~I--~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 208 VLLPVT-LKEI--GSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp EECCTT-CCEE--CTTTTTTCTTCCCEECC
T ss_pred EEeCCc-hhee--hhhHhhCCCCCCEEecC
Confidence 988755 5544 22466778888887753
No 455
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=91.00 E-value=13 Score=42.14 Aligned_cols=146 Identities=14% Similarity=0.004 Sum_probs=88.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
.|.++...+ ++.+.+ |+.++-+..||..+++.............|.++...+ + ..+..|+. +-+..||..+....
T Consensus 408 ~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-N-KKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp BEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-T-SEEEEEET-TEEEEEESSSSSCC
T ss_pred ceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-C-CCEEEEEC-CceEEEeCCCCeEE
Confidence 377888876 665554 7776668999988776543211011345788888775 3 45666666 55888887763210
Q ss_pred cccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCe
Q 035500 519 VADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPL 591 (606)
Q Consensus 519 ~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~ 591 (606)
...... ....|.++...++|.+.+.+.. +-+..||..+++.. .+... ....|.++...++|.
T Consensus 483 --------~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~- 551 (781)
T 3v9f_A 483 --------HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQ- 551 (781)
T ss_dssp --------EEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSC-
T ss_pred --------ecccCcccccccceeEEEEEcCCCCEEEEEcC-CCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCC-
Confidence 000000 1245889988888876665443 44778998766543 33211 245789999988887
Q ss_pred EEEEEeCCCe
Q 035500 592 CLLLLHLTTM 601 (606)
Q Consensus 592 LLaTgS~Dgt 601 (606)
+.+++. +|.
T Consensus 552 lWi~T~-~Gl 560 (781)
T 3v9f_A 552 MWLATG-EGL 560 (781)
T ss_dssp EEEEET-TEE
T ss_pred EEEEEC-CCc
Confidence 444433 665
No 456
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.12 E-value=7.8 Score=42.32 Aligned_cols=162 Identities=11% Similarity=0.054 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECC-------CCce-----------EEEEeccCCCCCEEEEEEeeCCCC-EEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHE-------NGNV-----------ACYIPSIGGTNSVLGLCWLKKYPS-KLVA 500 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~-------tg~~-----------v~~~~~~gH~~~V~~L~fsp~~~~-~LaS 500 (606)
+..++++|.++.++++-..++.|..+|.. ++.. ...+-..+....-+.++|+|. ++ ++++
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-G~~lYva 327 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT-GKYAYFG 327 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT-SSEEEEE
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC-CCEEEEE
Confidence 44677999777777788888999999987 5543 111111233445689999994 45 4666
Q ss_pred EECCCeEEEEeCCCCCCCc---ccccCCcceEEee-c------CCCeE-EEEEc-------cCCCEEEEEeCCCcEEEEE
Q 035500 501 GSDSGCVRLFDLNHIPPKV---ADARGNSSVATYY-D------FEQLT-SVHVN-------STDDQFLASGYSKNVALYD 562 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~---~~l~~~~~i~t~~-~------~~~V~-sV~~s-------p~g~~LaSgs~Dg~I~IWD 562 (606)
=+....|+.+|........ ..+-+.....-+. + -..-. .+... +.++++++=...+.|+.++
T Consensus 328 D~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 328 VINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp ETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred eCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence 6778889887654421100 0000000000000 0 01123 44444 4566777777789999998
Q ss_pred CCCCceeEEEc-C------------CC----------CCCeEEEEEeCCCCeEEEEEeCCCeEEE
Q 035500 563 INTEKPLQLFT-D------------MH----------REPINVAKFSHHSPLCLLLLHLTTMSRC 604 (606)
Q Consensus 563 lrt~k~v~~l~-~------------gH----------~~~I~sV~fsP~g~~LLaTgS~DgtIRc 604 (606)
.++.. .++- . |. -..-+.|+++++...++++=+....||.
T Consensus 408 -~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 408 -PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp -TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 45543 3332 1 11 1235689999974557777777777774
No 457
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.01 E-value=0.94 Score=50.78 Aligned_cols=126 Identities=7% Similarity=-0.056 Sum_probs=68.5
Q ss_pred CcEEEEECCCCceEEEEeccCC-------CCCEEEEEEeeCCCCEEEEEECCC-----------eEEEEeCCCCCCCccc
Q 035500 460 GEVIVINHENGNVACYIPSIGG-------TNSVLGLCWLKKYPSKLVAGSDSG-----------CVRLFDLNHIPPKVAD 521 (606)
Q Consensus 460 GtVrIWDi~tg~~v~~~~~~gH-------~~~V~~L~fsp~~~~~LaSgS~Dg-----------tIklWDl~~~~~~~~~ 521 (606)
..+..||..+............ .....++.|...++..++.|+.++ .|.+||.....
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----- 443 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----- 443 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----
Confidence 3567888887654332221110 112345555444566777777543 57777766521
Q ss_pred ccCCcceEEee-----cCCCeEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCceeE--EEcCCCCCCeEEE
Q 035500 522 ARGNSSVATYY-----DFEQLTSVHVNSTDDQFLASGYS-----------KNVALYDINTEKPLQ--LFTDMHREPINVA 583 (606)
Q Consensus 522 l~~~~~i~t~~-----~~~~V~sV~~sp~g~~LaSgs~D-----------g~I~IWDlrt~k~v~--~l~~gH~~~I~sV 583 (606)
..... ....-.+....|++.+++.||.+ ..+.+||..+.+=.. .+. .......+.
T Consensus 444 ------W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~-~~R~~hs~a 516 (656)
T 1k3i_A 444 ------NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYHSIS 516 (656)
T ss_dssp ------EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTTEEE
T ss_pred ------eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC-CccccccHh
Confidence 11111 11112344567899999999864 568999998764221 112 111222344
Q ss_pred EEeCCCCeEEEEEeC
Q 035500 584 KFSHHSPLCLLLLHL 598 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~ 598 (606)
.+.|++. +++.||.
T Consensus 517 ~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 517 LLLPDGR-VFNGGGG 530 (656)
T ss_dssp EECTTSC-EEEEECC
T ss_pred hcCCCcE-EEecCCC
Confidence 5568887 6777774
No 458
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=89.85 E-value=12 Score=42.52 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEe-ccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIP-SIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~-~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~ 518 (606)
|+++...+ ++.+. .|+.++-+..||..++....... .......|.++...+ + ..|..|+.++-+..+|..+..
T Consensus 365 v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~-- 438 (781)
T 3v9f_A 365 VSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-E-GNLWFGTYLGNISYYNTRLKK-- 438 (781)
T ss_dssp EEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-T-SCEEEEETTEEEEEECSSSCE--
T ss_pred eEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-C-CCEEEEeccCCEEEEcCCCCc--
Confidence 78888877 66554 56655558899987654332110 012345688888765 3 345567777778888876521
Q ss_pred cccccCCcceEEee----cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC----CCCCeEEEEEeCCCC
Q 035500 519 VADARGNSSVATYY----DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM----HREPINVAKFSHHSP 590 (606)
Q Consensus 519 ~~~l~~~~~i~t~~----~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g----H~~~I~sV~fsP~g~ 590 (606)
...+. ....|.++...+++.+.+. +. +-+..||..+++........ ....|.++...++|.
T Consensus 439 ---------~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 439 ---------FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp ---------EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred ---------EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 22222 2345888888777765554 44 56899999877654433211 146799999988887
Q ss_pred eEEEEEeCCCeEE
Q 035500 591 LCLLLLHLTTMSR 603 (606)
Q Consensus 591 ~LLaTgS~DgtIR 603 (606)
+.+++..+|..+
T Consensus 508 -lWigt~~~Gl~~ 519 (781)
T 3v9f_A 508 -FWIGTFGGGVGI 519 (781)
T ss_dssp -EEEEESSSCEEE
T ss_pred -EEEEEcCCCEEE
Confidence 454444456554
No 459
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.70 E-value=16 Score=36.84 Aligned_cols=145 Identities=8% Similarity=-0.006 Sum_probs=74.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCc
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKV 519 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~ 519 (606)
+..+.+.+ ++..++++ .+|.|..- ...|+-=... ..++...+..+.+.+ ++..++.+...+..+-+|-.. .
T Consensus 124 ~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG-~--- 194 (327)
T 2xbg_A 124 PRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQAL-VQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ-T--- 194 (327)
T ss_dssp EEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEE-ECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTC-S---
T ss_pred eEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEe-ecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCC-C---
Confidence 34455555 45555544 46654321 1123221111 125566789999987 445555544433344444311 0
Q ss_pred ccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC---CCCCeEEEEEeCCCCeEEEEE
Q 035500 520 ADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM---HREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 520 ~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g---H~~~I~sV~fsP~g~~LLaTg 596 (606)
. -..+ .......+..+.+.+++..++ ++.+|.++.++...++.-..+..+ +...+.++.+.|.+. +++++
T Consensus 195 -t---W~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g 267 (327)
T 2xbg_A 195 -A---WEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG 267 (327)
T ss_dssp -S---CEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE
T ss_pred -c---eeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe
Confidence 0 1111 112234588898988877654 455788877753334332222211 234688999998765 56655
Q ss_pred eCCCe
Q 035500 597 HLTTM 601 (606)
Q Consensus 597 S~Dgt 601 (606)
. ++.
T Consensus 268 ~-~g~ 271 (327)
T 2xbg_A 268 G-AGA 271 (327)
T ss_dssp S-TTC
T ss_pred C-CCe
Confidence 5 443
No 460
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.61 E-value=0.44 Score=54.35 Aligned_cols=149 Identities=6% Similarity=-0.028 Sum_probs=83.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-CeEEEEeCCCCCCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-GCVRLFDLNHIPPK 518 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-gtIklWDl~~~~~~ 518 (606)
+..+++.+..+++.++-...+.|.+++.........+. .......+|+++|.++.++++-... +.|..+++.....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~- 531 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 531 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC--CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe--CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence 56678887566666666677899999987544333222 2223467888888555555544333 6777766654211
Q ss_pred cccccCCcceEEee-cCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCeEEEEEeCCCCeEEEE
Q 035500 519 VADARGNSSVATYY-DFEQLTSVHVNSTDD-QFLASGYSKNVALYDINTEKPLQLFTD-MHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 519 ~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~-~LaSgs~Dg~I~IWDlrt~k~v~~l~~-gH~~~I~sV~fsP~g~~LLaT 595 (606)
..... .-..-+.|+|.|++. ++++-+..+.|..+|+........+.. +.-.....+++.. ..++.+
T Consensus 532 ---------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt 600 (699)
T 1n7d_A 532 ---------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT 600 (699)
T ss_dssp ---------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE
T ss_pred ---------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE
Confidence 11111 123357899998865 555556678899999874333222221 1112233444433 356666
Q ss_pred EeCCCeE
Q 035500 596 LHLTTMS 602 (606)
Q Consensus 596 gS~DgtI 602 (606)
....+.|
T Consensus 601 d~~~~~V 607 (699)
T 1n7d_A 601 DIINEAI 607 (699)
T ss_dssp CSTTTCE
T ss_pred eCCCCeE
Confidence 5554444
No 461
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.85 E-value=24 Score=36.69 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=84.2
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+.-.|| ..+.+|--. ..++.|||+++...++.+.+ ...|.-..|-. ++.|+-.+ +..|..|++...
T Consensus 71 sAIMnP-~~~ViALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~------ 136 (365)
T 2xzh_A 71 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE------ 136 (365)
T ss_dssp EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTT------
T ss_pred eeeeCC-CccEEEEec-CCeEEEechHHhhhhcceec---CCccEEEEecC--CCeEEEEc-CCcEEEEcccCC------
Confidence 344799 677888876 78899999999988887764 35788889973 35665555 458999999863
Q ss_pred ccCCcceEEeecC-----CCeEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeEEEcCCCCCCe
Q 035500 522 ARGNSSVATYYDF-----EQLTSVHVNSTDDQFLASGY-------SKNVALYDINTEKPLQLFTDMHREPI 580 (606)
Q Consensus 522 l~~~~~i~t~~~~-----~~V~sV~~sp~g~~LaSgs~-------Dg~I~IWDlrt~k~v~~l~~gH~~~I 580 (606)
..|.+.+..+ .+|..-..+++.++++..|- .|.+.+|..+.+. -+.++ ||...-
T Consensus 137 ---s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie-Ghaa~F 202 (365)
T 2xzh_A 137 ---SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-GHAASF 202 (365)
T ss_dssp ---CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC-CSEEEE
T ss_pred ---CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceee-eeeeee
Confidence 4567766643 44767777888887665542 3788899887653 34455 674433
No 462
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=88.74 E-value=14 Score=38.54 Aligned_cols=139 Identities=5% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC---CCC---E-EEEEEC--CCeEEEEeCCCCCCCcc
Q 035500 450 PSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK---YPS---K-LVAGSD--SGCVRLFDLNHIPPKVA 520 (606)
Q Consensus 450 g~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~---~~~---~-LaSgS~--DgtIklWDl~~~~~~~~ 520 (606)
.++++.....+-+.|||+ +|+.+..+.. +.+..+..-|. ++. + ++|.-. +++|.+|++........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 346666667788999999 7888877642 45777766552 111 2 233333 58999998853211111
Q ss_pred cccCC-cceEEeecC-CCeEEEEE--ccCC-C-EEEEEeCCCcEEEEECC-------CCceeEEEcCCCCCCeEEEEEeC
Q 035500 521 DARGN-SSVATYYDF-EQLTSVHV--NSTD-D-QFLASGYSKNVALYDIN-------TEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 521 ~l~~~-~~i~t~~~~-~~V~sV~~--sp~g-~-~LaSgs~Dg~I~IWDlr-------t~k~v~~l~~gH~~~I~sV~fsP 587 (606)
..... .++ ... ..+..+++ +|.+ . +++....+|.+..|++. +.+.++.|.. .+.+-.+...+
T Consensus 115 ~i~~~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEET
T ss_pred eccccccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcC
Confidence 11000 011 111 33556666 6654 3 67788888999999883 3366888884 45777888888
Q ss_pred CCCeEEEEEeCC
Q 035500 588 HSPLCLLLLHLT 599 (606)
Q Consensus 588 ~g~~LLaTgS~D 599 (606)
....+++ +-+|
T Consensus 190 ~~g~Lyv-~eEd 200 (355)
T 3amr_A 190 EYGRLYI-AEED 200 (355)
T ss_dssp TTTEEEE-EETT
T ss_pred CCCeEEE-eccc
Confidence 7776554 4443
No 463
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=88.19 E-value=14 Score=36.52 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe--ecCCCeEEEEEccCCCEEEEEeCCCc
Q 035500 480 GGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY--YDFEQLTSVHVNSTDDQFLASGYSKN 557 (606)
Q Consensus 480 gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~--~~~~~V~sV~~sp~g~~LaSgs~Dg~ 557 (606)
+-.+.+.+++|+|+++.+++....++.|...|... + -+..+ .+....-.|++.+++.++++.-.++.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~----------v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-D----------LIRTIPLDFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-C----------EEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-C----------EEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence 55568999999996544555566788888888773 1 23333 34456888999887776666656788
Q ss_pred EEEEECCCCce---eEEEcC-----CCCCCeEEEEEeCCCCeEEEEEeCCC
Q 035500 558 VALYDINTEKP---LQLFTD-----MHREPINVAKFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 558 I~IWDlrt~k~---v~~l~~-----gH~~~I~sV~fsP~g~~LLaTgS~Dg 600 (606)
+.++++..... +..... .+....-.++|+|.+..++++.-.+.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 99998875432 223321 13345689999999988777665553
No 464
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.52 E-value=16 Score=44.18 Aligned_cols=147 Identities=13% Similarity=0.191 Sum_probs=88.1
Q ss_pred eeEEEEcCCCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEE
Q 035500 440 PRQFEYNPSNPSLMAFGT----------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRL 509 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs----------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIkl 509 (606)
+..+.|......+++.|+ ..|.|.+|++..++... +.....+++|++++-. ++ +|++|- .++|++
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l-v~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~v 908 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT-VAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRL 908 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE-EEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE-EEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEE
Confidence 444445443357999887 45889999987554333 3333557889999865 33 555443 578999
Q ss_pred EeCCCCCCCcccccCCcceE-EeecCCCeEEEEEccCCCEEEEEeCCCcEEE--EECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 510 FDLNHIPPKVADARGNSSVA-TYYDFEQLTSVHVNSTDDQFLASGYSKNVAL--YDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 510 WDl~~~~~~~~~l~~~~~i~-t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I--WDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
|++...+ .++ .......|..+.....+++++.|..-..|.+ |+...++....-...+...++++.|-
T Consensus 909 y~l~~~~----------~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~l 978 (1158)
T 3ei3_A 909 YEWTTEK----------ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 978 (1158)
T ss_dssp EEECTTS----------CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEE
T ss_pred EECCCCc----------eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEE
Confidence 9998632 122 1111222333333335789998887666665 45544444444443466788888886
Q ss_pred CCCCeEEEEEeCCCeEE
Q 035500 587 HHSPLCLLLLHLTTMSR 603 (606)
Q Consensus 587 P~g~~LLaTgS~DgtIR 603 (606)
.++. ++.+..+|.+.
T Consensus 979 d~~t--~l~aD~~gNl~ 993 (1158)
T 3ei3_A 979 DDDN--FLGAENAFNLF 993 (1158)
T ss_dssp ETTE--EEEEETTSEEE
T ss_pred ccCc--EEEEcCCCcEE
Confidence 5543 55677776654
No 465
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.45 E-value=14 Score=36.23 Aligned_cols=144 Identities=6% Similarity=-0.078 Sum_probs=77.3
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceE------EEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVA------CYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLN 513 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v------~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~ 513 (606)
++.++|+| ++.+.|. .+|.+.-.+..+.... ..+-..+... -..+.|.| ++.+.++ .||.|.-|+-.
T Consensus 43 ~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 43 FKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 67899999 9987666 7787766666442211 1111112121 35777887 4454444 56988777653
Q ss_pred CCCCCcccccCCcceEEee-cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCCeEEEEEe
Q 035500 514 HIPPKVADARGNSSVATYY-DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEK------PLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~-~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k------~v~~l~~gH~~~I~sV~fs 586 (606)
+.. ...+... ....-. +-..+..|.+.|+|.+.+.. |+.++-+-..++. ....+....-..-+-+.|.
T Consensus 116 ~~~--~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSD--TDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CST--TCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCC--CCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 321 1122111 111111 23458999999999998888 6665443333221 1112221223344556788
Q ss_pred CCCCeEEEEE
Q 035500 587 HHSPLCLLLL 596 (606)
Q Consensus 587 P~g~~LLaTg 596 (606)
|++. +++..
T Consensus 191 ~~G~-l~~v~ 199 (236)
T 1tl2_A 191 SVGT-LFGVQ 199 (236)
T ss_dssp TTSC-EEEEE
T ss_pred CCCc-EEEEe
Confidence 8886 44443
No 466
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=86.33 E-value=31 Score=37.26 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCccc
Q 035500 442 QFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVAD 521 (606)
Q Consensus 442 slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~ 521 (606)
+.-.|| ..+.+|--. ..++.|||+++...+..+.+ ...|.-..|-. ++.|+-.+ +..|..|++...
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~------ 135 (494)
T 1bpo_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE------ 135 (494)
T ss_dssp EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSS------
T ss_pred eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEecC--CCeEEEEc-CCeeEEecccCC------
Confidence 445889 667888776 78999999999988887654 34688889974 35665554 568999999763
Q ss_pred ccCCcceEEeecC-----CCeEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 522 ARGNSSVATYYDF-----EQLTSVHVNSTDDQFLASGY-------SKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 522 l~~~~~i~t~~~~-----~~V~sV~~sp~g~~LaSgs~-------Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
..|++.|..+ .+|..-..+++.++++..|- .|.+.+|..+.+.. +.++ ||......+
T Consensus 136 ---s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~ 204 (494)
T 1bpo_A 136 ---SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQF 204 (494)
T ss_dssp ---CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC-CSEEEEEEE
T ss_pred ---CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe-eeeeeeEEE
Confidence 4577777643 44777777888887764432 37888999876543 3444 674444333
No 467
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=84.07 E-value=0.57 Score=49.68 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=16.2
Q ss_pred cccEEecccCCCcccccccccccCccccEEEccccc
Q 035500 148 HLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETR 183 (606)
Q Consensus 148 ~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~ 183 (606)
.|.+|.| .++|+.|+..+|..+++|+.|.+.+|.
T Consensus 249 ~L~~i~l--p~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 249 GITTVKL--PNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CCSEEEE--ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CccEEEe--CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 4444444 244555555555555555555554443
No 468
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=82.46 E-value=50 Score=34.37 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=73.9
Q ss_pred CCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEeec
Q 035500 459 DGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYYD 533 (606)
Q Consensus 459 DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~~ 533 (606)
.|.+.+|..+.+.. ..++ ||...-..+... +.....++-+.. .+.+++-++.+......+.. ++.+..+-.
T Consensus 179 ~G~mQLYS~er~~s-Q~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-kk~vdi~fp 254 (365)
T 2xzh_A 179 VGAMQLYSVDRKVS-QPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFFP 254 (365)
T ss_dssp EEEEEEEETTTTEE-EEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-CEEEEECCC
T ss_pred ceeEEEEeeccccc-ceee--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-cccceeeCC
Confidence 36788999886443 2333 654332222211 101112222222 25888888865421111221 222222221
Q ss_pred ----CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 534 ----FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 534 ----~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.+---+++.++.-..+..-+.-|.+.+||++++.++..-+ -..+.|...+-+....-+++.
T Consensus 255 pea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr-IS~d~iF~ta~~~~~~Gi~~V 319 (365)
T 2xzh_A 255 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGV 319 (365)
T ss_dssp TTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEEGGGTEEEEE
T ss_pred ccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec-cCCCceEEecccCCCCcEEEE
Confidence 1225678888888888888999999999999999987777 356777666665443333433
No 469
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=80.62 E-value=27 Score=35.56 Aligned_cols=155 Identities=9% Similarity=0.038 Sum_probs=80.7
Q ss_pred eeEEEEcCCCCCEEEEEeC-------------CCcEEEEECCCC------------ceEEEEeccCCCCCEEEEEEeeCC
Q 035500 440 PRQFEYNPSNPSLMAFGTL-------------DGEVIVINHENG------------NVACYIPSIGGTNSVLGLCWLKKY 494 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~-------------DGtVrIWDi~tg------------~~v~~~~~~gH~~~V~~L~fsp~~ 494 (606)
...++|.| ++.+.++-+. .|.|.-++.... .....+ ..+|. ...+++|+|..
T Consensus 137 ~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~r-np~g~a~d~~~ 213 (352)
T 2ism_A 137 GGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGHR-NPQGLAWHPKT 213 (352)
T ss_dssp CCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECCS-EECCCEECTTT
T ss_pred CceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcCC-CcccEEEECCC
Confidence 44678999 8876666432 256666665420 000111 12443 46788999855
Q ss_pred CCEEEEEECCCeE------EEEeCCCCCCCc----c---ccc-CCcceEEeecCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 035500 495 PSKLVAGSDSGCV------RLFDLNHIPPKV----A---DAR-GNSSVATYYDFEQLTSVHVNSTDDQFLASGYSKNVAL 560 (606)
Q Consensus 495 ~~~LaSgS~DgtI------klWDl~~~~~~~----~---~l~-~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~Dg~I~I 560 (606)
+.++++-.....+ .+.-+..+..-. . ... -..|+..+..+.....++| .++.++++.-..+.|..
T Consensus 214 g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~ 292 (352)
T 2ism_A 214 GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLR 292 (352)
T ss_dssp CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEE
Confidence 5555544332221 122222221000 0 000 0235556655556778888 46777777666778888
Q ss_pred EECCCCce------eEEEcCCCCCCeEEEEEeCCCCeEEEEEeCC
Q 035500 561 YDINTEKP------LQLFTDMHREPINVAKFSHHSPLCLLLLHLT 599 (606)
Q Consensus 561 WDlrt~k~------v~~l~~gH~~~I~sV~fsP~g~~LLaTgS~D 599 (606)
.++..... ...+- .--..+..+++.|+|.-.+++.+.+
T Consensus 293 v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~~~~ 336 (352)
T 2ism_A 293 LVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTSNRD 336 (352)
T ss_dssp EEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEECSTT
T ss_pred EEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEeCCC
Confidence 77764331 12221 1236789999999997444443334
No 470
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=80.60 E-value=3 Score=43.27 Aligned_cols=114 Identities=8% Similarity=0.079 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeC-CCCEEEEE--ECCCeEEEEeCCCCCCCcccccCCcc
Q 035500 451 SLMAFGTLDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKK-YPSKLVAG--SDSGCVRLFDLNHIPPKVADARGNSS 527 (606)
Q Consensus 451 ~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~-~~~~LaSg--S~DgtIklWDl~~~~~~~~~l~~~~~ 527 (606)
++++.++.||.|.-+|.++|+....++.. ...++....-... .+..++.+ +.||.+..+|...+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~---------- 79 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ---------- 79 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------
Confidence 48899999999999999999999987643 2123322211000 11233333 5799998888766311
Q ss_pred eEEee-----cCCCeEE--------EEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 035500 528 VATYY-----DFEQLTS--------VHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDM 575 (606)
Q Consensus 528 i~t~~-----~~~~V~s--------V~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~g 575 (606)
...+. ...++.. .--...+..+++|+.+|++.-.|+++|+.+..+..+
T Consensus 80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 01111 1122221 000014678899999999999999999999988743
No 471
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=80.41 E-value=69 Score=34.64 Aligned_cols=150 Identities=10% Similarity=0.122 Sum_probs=84.6
Q ss_pred eeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEEC---CCeE
Q 035500 440 PRQFEYNPSNPSLMAFGT-------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGSD---SGCV 507 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs-------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS~---DgtI 507 (606)
+..-..++ +.++++..| -.|.+.+|..+.+... .++ ||...-..+... +.....++-+.. .+.+
T Consensus 153 IInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 228 (494)
T 1bpo_A 153 IINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (494)
T ss_dssp EEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EEC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred EEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccccc-hhe--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 33334455 555555332 2477889998865432 233 665333333221 100112333333 2789
Q ss_pred EEEeCCCCCCCcccccCCcceEEee-c---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEE
Q 035500 508 RLFDLNHIPPKVADARGNSSVATYY-D---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVA 583 (606)
Q Consensus 508 klWDl~~~~~~~~~l~~~~~i~t~~-~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV 583 (606)
++-++.+......+.. ++.+..+- . .+--.+++.++.-..+..-+.-|.+.+||++++.++..-+ -..+.|...
T Consensus 229 hi~Ei~~~~~~~~~f~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t 306 (494)
T 1bpo_A 229 HIIEVGTPPTGNQPFP-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVT 306 (494)
T ss_dssp EEEECSCCCTTCCCCC-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEE
T ss_pred EEEEcCCCccCCCCcc-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-ccCCceEEe
Confidence 9999866422111221 22221111 1 1225678889888888888999999999999999987777 356777776
Q ss_pred EEeCCCCeEEEE
Q 035500 584 KFSHHSPLCLLL 595 (606)
Q Consensus 584 ~fsP~g~~LLaT 595 (606)
+-+....-+++.
T Consensus 307 ~~~~~~~Gi~~V 318 (494)
T 1bpo_A 307 APHEATAGIIGV 318 (494)
T ss_dssp EEETTTTEEEEE
T ss_pred cccCCCCcEEEE
Confidence 666554444433
No 472
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=75.36 E-value=34 Score=35.48 Aligned_cols=114 Identities=10% Similarity=0.009 Sum_probs=68.6
Q ss_pred eceeEEEEcCCCCCEEEEEe-----------------CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEE
Q 035500 438 VRPRQFEYNPSNPSLMAFGT-----------------LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVA 500 (606)
Q Consensus 438 ~rV~slafsP~dg~~LaSGs-----------------~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaS 500 (606)
.++..+.+.| +|.+.++.. ..|.|.-+|. ++..... ..-..-++++|+|++....++
T Consensus 165 ~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~---~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 165 PSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA---EGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp SSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEE---EEESSEEEEEECTTSSEEEEE
T ss_pred CCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEee---cCCcccCcceECCCCCEEEEE
Confidence 4577888998 887777654 1255555554 3222111 222357899999954445556
Q ss_pred EECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEEEcc-CCCEEEEEeCC-CcEEEEECC
Q 035500 501 GSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNS-TDDQFLASGYS-KNVALYDIN 564 (606)
Q Consensus 501 gS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp-~g~~LaSgs~D-g~I~IWDlr 564 (606)
-+..+.|..|++..... ......+......-.+++.+ +|++++++..+ +.|..||..
T Consensus 239 dt~~~~I~~~~~~~~g~-------l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWT-------LTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EGGGTEEEEEEECTTSC-------EEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eCCCCeEEEEEECCCCc-------EecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 66788999999875211 11122333334467888998 59988877644 344445544
No 473
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.84 E-value=34 Score=36.74 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCc---eEEEEec-c------CCCCCEEEEEEeeC---CCCEEEEEECCC
Q 035500 440 PRQFEYNPSNPS-LMAFGTLDGEVIVINHENGN---VACYIPS-I------GGTNSVLGLCWLKK---YPSKLVAGSDSG 505 (606)
Q Consensus 440 V~slafsP~dg~-~LaSGs~DGtVrIWDi~tg~---~v~~~~~-~------gH~~~V~~L~fsp~---~~~~LaSgS~Dg 505 (606)
++.|+|.| ++. .+..+...|.|++++..... .+..+.. . +..+...+|+|+|+ ++...++-+.+.
T Consensus 16 P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 16 PVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp EEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred ceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 78899999 775 45566788999999754221 1111110 0 11456889999984 233444433211
Q ss_pred ------------eEEEEeCCCCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCC
Q 035500 506 ------------CVRLFDLNHIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYS 555 (606)
Q Consensus 506 ------------tIklWDl~~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~D 555 (606)
.|.-|.+.........+.....+.... .......|.|.|+|.+.++.|+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 333355543211100011012222222 12337899999999988877754
No 474
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=71.32 E-value=92 Score=31.57 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=47.2
Q ss_pred cceEEeecCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEECCCCceeEE--EcCCCCCCeEEEEEeCCCCeEEEE
Q 035500 526 SSVATYYDFEQLTSVHVNS-------TDDQFLASGYSKNVALYDINTEKPLQL--FTDMHREPINVAKFSHHSPLCLLL 595 (606)
Q Consensus 526 ~~i~t~~~~~~V~sV~~sp-------~g~~LaSgs~Dg~I~IWDlrt~k~v~~--l~~gH~~~I~sV~fsP~g~~LLaT 595 (606)
.|+..+.++.....+.|.. ++.++++.-..+.|...++..++.+.. +-..-...+..+++.|+|. ++++
T Consensus 262 ~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~ 339 (353)
T 2g8s_A 262 QPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY-LYVL 339 (353)
T ss_dssp CCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-EEEE
T ss_pred CCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-EEEE
Confidence 4556677777788888864 466777777778888888876654322 2112235799999999998 4554
No 475
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=71.21 E-value=3.2 Score=43.11 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=15.1
Q ss_pred ccccEEecccCCCcccccccccccCccccEEEcc
Q 035500 147 MHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMC 180 (606)
Q Consensus 147 ~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~ 180 (606)
.+|+++.|. .+|+.|++.+|..+++|+.+.+-
T Consensus 343 ~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 343 TSLSNINFP--LSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCCEECCC--TTCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCEEEEC--ccccEehHHHhhCCCCCCEEEEC
Confidence 344444443 22555555555555555555443
No 476
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=70.92 E-value=95 Score=31.56 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCC----cEEEEECCCCceEEEEe----ccC--------CCCCEEEEEEeeCC-CCEEEEEE
Q 035500 440 PRQFEYNPSNPSLMAFGTLDG----EVIVINHENGNVACYIP----SIG--------GTNSVLGLCWLKKY-PSKLVAGS 502 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DG----tVrIWDi~tg~~v~~~~----~~g--------H~~~V~~L~fsp~~-~~~LaSgS 502 (606)
+.+++++|.+++.+.+|+..| .|...+ ..|+.-..+. +.. +...|.++++.|.+ +..+..++
T Consensus 57 v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~ 135 (394)
T 3b7f_A 57 IHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT 135 (394)
T ss_dssp EEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred eEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence 788999986666666666555 444432 1122111111 000 11247789998754 56677776
Q ss_pred CCCeEEEE
Q 035500 503 DSGCVRLF 510 (606)
Q Consensus 503 ~DgtIklW 510 (606)
..+.|...
T Consensus 136 ~~ggl~~S 143 (394)
T 3b7f_A 136 SPQGLFRS 143 (394)
T ss_dssp ETTEEEEE
T ss_pred cCCcEEEE
Confidence 66655433
No 477
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=70.05 E-value=1.6e+02 Score=35.45 Aligned_cols=128 Identities=6% Similarity=-0.043 Sum_probs=73.0
Q ss_pred EEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEeecCCCeEEEE
Q 035500 462 VIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYYDFEQLTSVH 541 (606)
Q Consensus 462 VrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~ 541 (606)
|++.+...+..+..+.. .....|...+.+ +.+++.++ ++.+.++.+..+. -.......-...|.+++
T Consensus 494 Irli~~~~~~~~~~w~~-p~~~~I~~As~n---~~~vvva~-g~~l~~fel~~~~--------L~~~~~~~l~~evscl~ 560 (1158)
T 3ei3_A 494 VRLVSQEPKALVSEWKE-PQAKNISVASCN---SSQVVVAV-GRALYYLQIHPQE--------LRQISHTEMEHEVACLD 560 (1158)
T ss_dssp EEEEESSSCCEEEEECC-TTCCCCCEEEEC---SSEEEEEE-TTEEEEEEEETTE--------EEEEEEEECSSCEEEEE
T ss_pred EEEEECCCCeEEEEEEC-CCCCEEEEEEeC---CCEEEEEE-CCEEEEEEeeCCc--------eeeecccCCCCceEEEE
Confidence 56666554444443332 222345555543 24555555 6788888776421 11222333456799999
Q ss_pred EccC------CCEEEEEeC-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeCC-CCeEEEEEeCCCeE
Q 035500 542 VNST------DDQFLASGY-SKNVALYDINTEKPLQLFTDMHREPINVAKFSHH-SPLCLLLLHLTTMS 602 (606)
Q Consensus 542 ~sp~------g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP~-g~~LLaTgS~DgtI 602 (606)
+.|. +.+++.|.. |++++|+++..-+.+.....+-.....++.+... +...+..|-.||.+
T Consensus 561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGAL 629 (1158)
T ss_dssp CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred eecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeE
Confidence 8764 368999986 9999999999776665444222234445544321 22235566667754
No 478
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=66.99 E-value=49 Score=33.74 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=58.5
Q ss_pred CCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe----ecCCCeEEEEEccC---CC-EEEEEeC
Q 035500 483 NSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY----YDFEQLTSVHVNST---DD-QFLASGY 554 (606)
Q Consensus 483 ~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~----~~~~~V~sV~~sp~---g~-~LaSgs~ 554 (606)
....+++|.|+ +. ++.+..+|.|.++|-.. ...+..+ ........|+++|+ +. ++++-+.
T Consensus 29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~~G----------~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 29 EVPWSIAPLGG-GR-YLVTERPGRLVLISPSG----------KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp SCEEEEEEEET-TE-EEEEETTTEEEEECSSC----------EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCeEEEEcCC-Ce-EEEEeCCCEEEEEeCCC----------ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 35789999994 44 55566779999887322 1112111 12345899999998 44 4444332
Q ss_pred ---C----CcEEEEECCCC-------cee-EEEcCCCCCCeEEEEEeCCCCeEEEEE
Q 035500 555 ---S----KNVALYDINTE-------KPL-QLFTDMHREPINVAKFSHHSPLCLLLL 596 (606)
Q Consensus 555 ---D----g~I~IWDlrt~-------k~v-~~l~~gH~~~I~sV~fsP~g~~LLaTg 596 (606)
+ +.|..|+...+ +.+ ..++.+.......++|.|+|. |+++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~ 152 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT 152 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE
Confidence 3 56777877644 111 223311122346799999996 55553
No 479
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=66.88 E-value=87 Score=32.25 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=60.6
Q ss_pred CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEe-----ecCCCeEEEEEccC---CCEEEEE-
Q 035500 482 TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATY-----YDFEQLTSVHVNST---DDQFLAS- 552 (606)
Q Consensus 482 ~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~-----~~~~~V~sV~~sp~---g~~LaSg- 552 (606)
-...++++|.| ++.++++--..|.|++++...+.. ..+..+ .+......|+++|+ +..++..
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 44678999998 556666554489999887654211 112211 22445899999996 3444332
Q ss_pred --eCCCcEEEEECCCC----------ce-eEEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 553 --GYSKNVALYDINTE----------KP-LQLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 553 --s~Dg~I~IWDlrt~----------k~-v~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
..++.|.-|....+ +. +..++.+....-..+.|.|+|. |+++.+
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 23455666665541 11 1223322222445799999996 555543
No 480
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=65.55 E-value=47 Score=35.34 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=56.7
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee-------cCCCeEEEEEccC---CCEEE-EE
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY-------DFEQLTSVHVNST---DDQFL-AS 552 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~-------~~~~V~sV~~sp~---g~~La-Sg 552 (606)
..++++|.| +++++++-...+.|.+++...+.. ..+..+. +...+..|+|+|+ +..|. +-
T Consensus 28 ~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~--------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGP-DNQIWLTERATGKILRVNPESGSV--------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcE--------eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 467999998 556555543334688887543211 1122221 2344789999996 44443 33
Q ss_pred eC------------CCcEEEEECCCC-------cee-EEEcCCCCCCeEEEEEeCCCCeEEEEEe
Q 035500 553 GY------------SKNVALYDINTE-------KPL-QLFTDMHREPINVAKFSHHSPLCLLLLH 597 (606)
Q Consensus 553 s~------------Dg~I~IWDlrt~-------k~v-~~l~~gH~~~I~sV~fsP~g~~LLaTgS 597 (606)
+. ...|.-|+...+ +.+ ..++.........++|.|+|. |+++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 32 234555655322 112 223322224578999999997 455443
No 481
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=64.57 E-value=68 Score=31.01 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-------CeEEEEeCCCCC
Q 035500 449 NPSLMAFGTLDG-----EVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-------GCVRLFDLNHIP 516 (606)
Q Consensus 449 dg~~LaSGs~DG-----tVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-------gtIklWDl~~~~ 516 (606)
++.+++.|+.++ .+.+||..+.+....-.. .....-.+++.. ++..++.|+.+ ..+..||..+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 566777887664 578899887665443221 111111222222 34556666543 347788877631
Q ss_pred CCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc
Q 035500 517 PKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK 567 (606)
Q Consensus 517 ~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k 567 (606)
|. .+...... .....+.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 185 -----W~---~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 -----WT---YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp -----EE---EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred -----EE---ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 10 00001111 11122222 46777777764 468899998764
No 482
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=64.40 E-value=6.9 Score=40.52 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=27.2
Q ss_pred cccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhhc
Q 035500 146 FMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRFQ 206 (606)
Q Consensus 146 ~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~~ 206 (606)
..+|.++.|. .+|+.|++.+|..+.+|+.+.+-++ |..+- -.|...+++|+++.|.
T Consensus 310 c~~L~~i~lp--~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 310 CISLKSIDIP--EGITQILDDAFAGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYS 365 (394)
T ss_dssp CTTCCEEECC--TTCCEECTTTTTTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEES
T ss_pred CCCcCEEEeC--CcccEehHhHhhCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEEC
Confidence 3455555543 3455555555555555555555433 32221 1344455555555443
No 483
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=64.01 E-value=97 Score=29.80 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=55.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-----CeEEEEeCCCCCCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-----GCVRLFDLNHIPPK 518 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-----gtIklWDl~~~~~~ 518 (606)
++.+++.|+.+ ..+.+||..+++....-.. .....-.+++.. ++..++.|+.+ ..+..||..+..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH-- 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence 55677777754 3688999887665443222 111111222222 34566666654 357788877631
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK 567 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k 567 (606)
|. .+...... .....+.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 187 ---W~---~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 187 ---WT---NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ---EE---EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ---EE---eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 10 00001111 11122222 46677777764 568999998764
No 484
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=63.74 E-value=4.2 Score=41.72 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=45.0
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.+++.+ .+..++ .+-...+|.++.|. ++.|+.|++.||..+++|+.+.+-++ |..+ --.|-..+++|+++.|
T Consensus 266 ~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~-~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I--~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 266 KTLNFYA-KVKTVPYLLCSGCSNLTKVVMD-NSAIETLEPRVFMDCVKLSSVTLPTA-LKTI--QVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECC-CCSEECTTTTTTCTTCCEEEEC-CTTCCEECTTTTTTCTTCCEEECCTT-CCEE--CTTTTTTCTTCCCCCC
T ss_pred ccccccc-cceecccccccccccccccccc-ccccceehhhhhcCCCCCCEEEcCcc-ccEE--HHHHhhCCCCCCEEEE
Confidence 3455532 233333 34455678888887 77788888888888888888887654 3322 1134555666666653
No 485
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=62.83 E-value=1.1e+02 Score=29.36 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc---eEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-----eEEEEeCCCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGN---VACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-----CVRLFDLNHI 515 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~---~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-----tIklWDl~~~ 515 (606)
++.+++.|+.+ ..+.+||..++. ....-.. .....-.+++.. ++..++.|+.++ .+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM-NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC-CCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 55677788765 468999988766 4332221 111111122222 345666666443 5777887663
Q ss_pred CCCcccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc
Q 035500 516 PPKVADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK 567 (606)
Q Consensus 516 ~~~~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k 567 (606)
. |. .+...... ..-..+.+ ++.+++.||.+ ..+..||+.+.+
T Consensus 139 ~-----W~---~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 139 Q-----WS---MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp E-----EE---EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred e-----EE---ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 1 11 11111111 11112222 56777777754 568899998764
No 486
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=61.04 E-value=56 Score=31.91 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=54.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC-----CeEEEEeCCCCCCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS-----GCVRLFDLNHIPPK 518 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D-----gtIklWDl~~~~~~ 518 (606)
++.+++.|+.+ ..+.+||..+++....-........ .+.+.. ++..++.|+.+ ..+..||..+..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE-- 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--
Confidence 55677777644 3688999887665432221111111 122222 34566666654 357788876631
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCc
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEK 567 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k 567 (606)
|. .+...... .....+.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 196 ---W~---~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 196 ---WR---MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp ---EE---ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ---Ee---eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 10 00001111 11122222 56677777764 569999998763
No 487
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=59.78 E-value=8.6 Score=39.79 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=41.1
Q ss_pred eEEEccccchhccc--cccccccccEEecccCCCcccccccccccCccccEEEcccccccchhhhhHHhhcCCchhhhhh
Q 035500 128 HVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLASLHEDCFSCMPYLMCLSMCETRIVNLWTTTAAISKLPYLMELRF 205 (606)
Q Consensus 128 ~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~l~~~~~~l~~~~~l~~l~~ 205 (606)
+.+++.++ +..++ .+....+|.++.|. ++|+.|++.+|..+.+|+.+.+-++ |..+- -.|...+++|+++.|
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLS-LRKIG--ANAFQGCINLKKVEL 373 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTT-CCEEC--TTTBTTCTTCCEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECcc-ccEeh--HHHhhCCCCCCEEEE
Confidence 34555432 44443 23344567766664 4577777777777777777777554 44331 135556666666654
No 488
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=58.68 E-value=5.8 Score=34.92 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.6
Q ss_pred eeEEEccccchhccc--cccccccccEEecccCCCcc
Q 035500 127 CHVLILRATNIRKLN--MVGRFMHLNTLSLDFCSSLA 161 (606)
Q Consensus 127 ~~~~~~~~~~~~~l~--~~~~~~~l~tl~l~~~~~~~ 161 (606)
=+.|+|++|+|..|. .+..+.+|++|.|. .|+..
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~NP~~ 68 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLG-ANPWR 68 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SSCCB
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEec-CCCee
Confidence 468999999999997 46678899999999 77653
No 489
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=58.27 E-value=11 Score=36.04 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCCcccchhHHHHHHHHhhccceEEEccCc-cccchHHHhhccC---CCceeEEEccccchhccc------ccccccccc
Q 035500 81 KRPCFLKEEYIMSLMHAIDQKLRVVDLSNI-TLRNDNLLDLCQV---GSSCHVLILRATNIRKLN------MVGRFMHLN 150 (606)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~------~~~~~~~l~ 150 (606)
++|=.-..+-++.-+..-|.+|+.++|+++ .+|.+-.+.|+.. --.=+.|+|+.|+|..-. ++-.=..|.
T Consensus 22 e~~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 22 EPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR 101 (197)
T ss_dssp -----CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC
T ss_pred CCCCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccC
Confidence 343333455567777788999999999985 8887766655432 233355677666664322 111234566
Q ss_pred EEecccCCCccc
Q 035500 151 TLSLDFCSSLAS 162 (606)
Q Consensus 151 tl~l~~~~~~~~ 162 (606)
+|+|. +|.|+.
T Consensus 102 ~L~L~-~N~Ig~ 112 (197)
T 1pgv_A 102 VLNVE-SNFLTP 112 (197)
T ss_dssp EEECC-SSBCCH
T ss_pred eEecC-CCcCCH
Confidence 67777 666653
No 490
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.06 E-value=2.1e+02 Score=32.61 Aligned_cols=149 Identities=9% Similarity=-0.007 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC----CCCCEEEEEEeeCCCCEEEEEECCCe----EEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG----GTNSVLGLCWLKKYPSKLVAGSDSGC----VRLF 510 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g----H~~~V~~L~fsp~~~~~LaSgS~Dgt----IklW 510 (606)
+|.+++++|.+++.+.+++..|.|...+=....-.......+ ....|.+++++|.++..++.+..+.. -.||
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~ 95 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFY 95 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEE
Confidence 488999999888888899888877666532111211111001 12469999999865555655543311 3344
Q ss_pred eCCCCCCCcccccCCcceEEee----------cCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEEcC-----
Q 035500 511 DLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNSTD-DQFLASGYSKNVALYDINTEKPLQLFTD----- 574 (606)
Q Consensus 511 Dl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp~g-~~LaSgs~Dg~I~IWDlrt~k~v~~l~~----- 574 (606)
--..... ...... ....+..++++|.. +.++.+...+.|. .....|+.-..+..
T Consensus 96 ~S~DgG~---------TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~ 165 (789)
T 1sqj_A 96 VSEDRGQ---------SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAF 165 (789)
T ss_dssp EESSTTS---------EEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCC
T ss_pred EECCCCC---------cceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCcccc
Confidence 3332211 111111 11125668888864 4555665343322 12223443332221
Q ss_pred CCCCCeEEEEEeCCCC-eEEEEEe
Q 035500 575 MHREPINVAKFSHHSP-LCLLLLH 597 (606)
Q Consensus 575 gH~~~I~sV~fsP~g~-~LLaTgS 597 (606)
.....+..+.++|..+ .+++.+.
T Consensus 166 ~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 166 TNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCCCeEEEEECCCCCCEEEEEEc
Confidence 1124688899998654 4555443
No 491
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=57.97 E-value=84 Score=30.40 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=66.2
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEEC---------CCeEEEEeCC
Q 035500 449 NPSLMAFGTLD------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSD---------SGCVRLFDLN 513 (606)
Q Consensus 449 dg~~LaSGs~D------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~---------DgtIklWDl~ 513 (606)
++.+++.|+.+ ..+.+||..+++....-.. .....-.+++.. ++..++.|+. -..+.+||..
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-LTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-cCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 56677888765 5688999988765432221 111111122222 3355555553 3457788887
Q ss_pred CCCCCcccccCCcceEEee---cCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCce--eEEEcCCCCCCeEEE
Q 035500 514 HIPPKVADARGNSSVATYY---DFEQLTSVHVNSTDDQFLASGYS-----KNVALYDINTEKP--LQLFTDMHREPINVA 583 (606)
Q Consensus 514 ~~~~~~~~l~~~~~i~t~~---~~~~V~sV~~sp~g~~LaSgs~D-----g~I~IWDlrt~k~--v~~l~~gH~~~I~sV 583 (606)
+.. ..... ....-.++... ++.+++.||.+ ..+.+||+.+.+= +..++. ......++
T Consensus 178 ~~~-----------W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~ 244 (306)
T 3ii7_A 178 TET-----------WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCA 244 (306)
T ss_dssp TTE-----------EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEE
T ss_pred CCe-----------EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEE
Confidence 631 11111 11011122222 46677777654 4688999987632 222221 11122233
Q ss_pred EEeCCCCeEEEEEeCCC
Q 035500 584 KFSHHSPLCLLLLHLTT 600 (606)
Q Consensus 584 ~fsP~g~~LLaTgS~Dg 600 (606)
.+ +..+++.|+.++
T Consensus 245 ~~---~~~i~v~GG~~~ 258 (306)
T 3ii7_A 245 AV---GSIVYVLAGFQG 258 (306)
T ss_dssp EE---TTEEEEEECBCS
T ss_pred EE---CCEEEEEeCcCC
Confidence 33 345788887653
No 492
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=57.10 E-value=93 Score=30.07 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=55.5
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECC------CeEEEEeCCCCCCC
Q 035500 449 NPSLMAFGTLD----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDS------GCVRLFDLNHIPPK 518 (606)
Q Consensus 449 dg~~LaSGs~D----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~D------gtIklWDl~~~~~~ 518 (606)
++.+++.|+.+ ..+.+||..+++....-.. .....-.+++.. ++..++.|+.+ ..+.+||..+..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-- 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP-PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-- 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC-SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC-CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence 55677888765 6788999988765443222 111111222222 44566777765 457788877631
Q ss_pred cccccCCcceEEeecC-CCeEEEEEccCCCEEEEEeC---------CCcEEEEECCCCc
Q 035500 519 VADARGNSSVATYYDF-EQLTSVHVNSTDDQFLASGY---------SKNVALYDINTEK 567 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~-~~V~sV~~sp~g~~LaSgs~---------Dg~I~IWDlrt~k 567 (606)
|. .+...... ..-..+.+ ++.+++.||. -..+..||+.+.+
T Consensus 130 ---W~---~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 130 ---WH---TKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp ---EE---EECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred ---eE---eCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 10 00001100 11112222 4566666654 3458899998774
No 493
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.09 E-value=36 Score=40.07 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=33.1
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPS 478 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~ 478 (606)
.+.+++..+ +..++.+-+.|+++|||++.+++++.+..+
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 366777777 778999999999999999999999887654
No 494
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=55.45 E-value=1.3e+02 Score=29.02 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEECCC-----eEEEEeCCCCCCC
Q 035500 449 NPSLMAFGTLD-----GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGSDSG-----CVRLFDLNHIPPK 518 (606)
Q Consensus 449 dg~~LaSGs~D-----GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS~Dg-----tIklWDl~~~~~~ 518 (606)
++.+++.|+.+ ..+.+||..+++....-.. .....-.+++.. ++..++.|+.++ .+.+||..+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~-- 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM-RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE-- 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE--
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC-CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe--
Confidence 55677777755 3588999887765432221 111111222222 345667777554 46677776531
Q ss_pred cccccCCcceEEeecCCCeEEEEEccCCCEEEEEeCC-------CcEEEEECCCCc
Q 035500 519 VADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGYS-------KNVALYDINTEK 567 (606)
Q Consensus 519 ~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~D-------g~I~IWDlrt~k 567 (606)
|. .+........-.++.. -++.+++.||.+ ..+..||+.+.+
T Consensus 136 ---W~---~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 136 ---WF---HVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp ---EE---EECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred ---Ee---ecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 10 0000111101111211 246677777643 458899998764
No 495
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=54.18 E-value=22 Score=34.87 Aligned_cols=138 Identities=6% Similarity=-0.115 Sum_probs=72.5
Q ss_pred EEEEEeCCCcEEEEECCCCceEE---EEeccCC--CCCEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCc
Q 035500 452 LMAFGTLDGEVIVINHENGNVAC---YIPSIGG--TNSVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNS 526 (606)
Q Consensus 452 ~LaSGs~DGtVrIWDi~tg~~v~---~~~~~gH--~~~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~ 526 (606)
.|++...| +|++=....+.... .....++ =..+..++|+| ++. |.+. .+|.+ |-..........+.+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~-LYaV-~~G~L--y~~~~~t~~~~~W~~-- 77 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGE-LYGV-LNDKI--YKGTPPTHDNDNWMG-- 77 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSC-EEEE-ETTEE--EEESCCCSTTCCHHH--
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-Ccc-EEEE-eCCeE--EEECCCCCCcccccc--
Confidence 45555566 66555555444100 0011122 24677999999 555 5455 67764 444432111111110
Q ss_pred ceEEee--cCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee------EEEcCCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 527 SVATYY--DFEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPL------QLFTDMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 527 ~i~t~~--~~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v------~~l~~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
.-..+. +.....++.|.|+|.+.++ .||.|.-|+..+...- ..+..+-=..+..|.|.|+|. |.+..
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-- 152 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-- 152 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--
T ss_pred cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--
Confidence 111111 1122578889999998888 4599988876442111 111100114678999999997 56655
Q ss_pred CCeE
Q 035500 599 TTMS 602 (606)
Q Consensus 599 DgtI 602 (606)
|+.+
T Consensus 153 dg~l 156 (236)
T 1tl2_A 153 GQQF 156 (236)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 5544
No 496
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=53.21 E-value=1.8e+02 Score=28.85 Aligned_cols=129 Identities=8% Similarity=0.042 Sum_probs=66.3
Q ss_pred EcCCCCCEEEEEeCC--------------CcEEEEECCCCceEEEEeccCCCCCEEEEEEeeCCCCEEEEEE--CCCeEE
Q 035500 445 YNPSNPSLMAFGTLD--------------GEVIVINHENGNVACYIPSIGGTNSVLGLCWLKKYPSKLVAGS--DSGCVR 508 (606)
Q Consensus 445 fsP~dg~~LaSGs~D--------------GtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fsp~~~~~LaSgS--~DgtIk 508 (606)
++| ++++|+-.... +.|+..++..++...... .. +..|++. +.+|+-.. .++.-.
T Consensus 60 i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-----~~--~~~~s~~-g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 60 INA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-----DP--CIYASLI-GNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-----SC--EEEEEEE-TTEEEEEEESSSSCEE
T ss_pred EEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-----CC--ccEEEEe-CCEEEEEeecCCCCce
Confidence 566 66777766542 467777777655333221 11 2356774 45555444 344444
Q ss_pred EEeCCCCCCCcccccCCcceEEeecCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEEcCCCCCCeEEEEEeC
Q 035500 509 LFDLNHIPPKVADARGNSSVATYYDFEQLTSVHVNSTDDQFLASGY-SKNVALYDINTEKPLQLFTDMHREPINVAKFSH 587 (606)
Q Consensus 509 lWDl~~~~~~~~~l~~~~~i~t~~~~~~V~sV~~sp~g~~LaSgs~-Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fsP 587 (606)
||-+.... .. ...+..+. + ..++|+++.|+-.+. ..+|..-++..+.....+. + ... ..++|
T Consensus 131 Iy~~~~dG--------s~-~~~lt~~~-~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~---~~~-~~~~P 193 (302)
T 3s25_A 131 LYRIRIDG--------EE-KKKIKNHY-L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-C---NCY-KPVVL 193 (302)
T ss_dssp EEEEETTS--------CC-CEEEESSC-C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-S---CEE-EEEEE
T ss_pred EEEEECCC--------CC-eEEEeCCC-c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-C---Ccc-ceeee
Confidence 55444321 11 11222111 1 345667776664444 5778888887665544443 2 222 23568
Q ss_pred CCCeEEEEEeCC
Q 035500 588 HSPLCLLLLHLT 599 (606)
Q Consensus 588 ~g~~LLaTgS~D 599 (606)
++.+++.+...+
T Consensus 194 ~g~~iy~t~~~~ 205 (302)
T 3s25_A 194 DDTNVYYMDVNR 205 (302)
T ss_dssp ETTEEEEEEGGG
T ss_pred cCCEEEEEEcCC
Confidence 888776665443
No 497
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=50.88 E-value=1.4e+02 Score=36.91 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCcEEEEECCCCceEEEEeccCCCCCEEEEEEe--eCCCCEEEEEEC---CCeEEEEeCCCCCCCcccccCCcceEEee
Q 035500 458 LDGEVIVINHENGNVACYIPSIGGTNSVLGLCWL--KKYPSKLVAGSD---SGCVRLFDLNHIPPKVADARGNSSVATYY 532 (606)
Q Consensus 458 ~DGtVrIWDi~tg~~v~~~~~~gH~~~V~~L~fs--p~~~~~LaSgS~---DgtIklWDl~~~~~~~~~l~~~~~i~t~~ 532 (606)
-.|.+.+|..+.+... .+ .||.+.-..+... +.....++-+.. .+.++|-++.+......+.. +..+..+-
T Consensus 177 v~G~mQLyS~er~~sQ-~i--egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~-kk~~~~~~ 252 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKVSQ-PI--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDVFF 252 (1630)
T ss_pred ccceeeeeecccccch-hh--hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc-cccccccC
Confidence 4588999998754432 12 2444333222221 101111211111 26888888866422111121 11221111
Q ss_pred -c---CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCeEEEEEe
Q 035500 533 -D---FEQLTSVHVNSTDDQFLASGYSKNVALYDINTEKPLQLFTDMHREPINVAKFS 586 (606)
Q Consensus 533 -~---~~~V~sV~~sp~g~~LaSgs~Dg~I~IWDlrt~k~v~~l~~gH~~~I~sV~fs 586 (606)
. .+--.+++.++.-..+..-+.-|.+.+||+.++..+..-+ -....|...+-+
T Consensus 253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~ 309 (1630)
T 1xi4_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPH 309 (1630)
T ss_pred CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccC
Confidence 1 1114567788887888888888999999999998865444 234555544443
No 498
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=50.04 E-value=2.3e+02 Score=30.07 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=58.0
Q ss_pred CEEEEEEeeCCCCEEEEEECCCeEEEEeCCCCCCCcccccCCcceEEee----------cCCCeEEEEEccC----CCEE
Q 035500 484 SVLGLCWLKKYPSKLVAGSDSGCVRLFDLNHIPPKVADARGNSSVATYY----------DFEQLTSVHVNST----DDQF 549 (606)
Q Consensus 484 ~V~~L~fsp~~~~~LaSgS~DgtIklWDl~~~~~~~~~l~~~~~i~t~~----------~~~~V~sV~~sp~----g~~L 549 (606)
.-++|+|.|++...++.+...|.|++++...... ..++..+. ....+..|+++|+ +.+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-------~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-------KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-------SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-------eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 4678999995432455567889999997543210 01111111 1345889999997 3333
Q ss_pred EEEeC--C----------CcEEEEECCC----------CceeEEEc-CCCCCCeEEEEEeCCCCeEEEEEeC
Q 035500 550 LASGY--S----------KNVALYDINT----------EKPLQLFT-DMHREPINVAKFSHHSPLCLLLLHL 598 (606)
Q Consensus 550 aSgs~--D----------g~I~IWDlrt----------~k~v~~l~-~gH~~~I~sV~fsP~g~~LLaTgS~ 598 (606)
++-+. + ..|.-|.+.. .+.+..+. .........++|.|+|. |+++.+.
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 33332 1 1344455542 12233332 11223467899999996 5555543
No 499
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.21 E-value=95 Score=35.41 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=43.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccCCC-----------CCEEEEEEeeCCCCEEEEEE--CCCe
Q 035500 440 PRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIGGT-----------NSVLGLCWLKKYPSKLVAGS--DSGC 506 (606)
Q Consensus 440 V~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~gH~-----------~~V~~L~fsp~~~~~LaSgS--~Dgt 506 (606)
|.++.+ +..++++-+.|+++|+||+.+++++......... .+-.-++.. +.++++-+ .+|.
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~---~~~lv~y~P~~~G~ 297 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLY---NNTLVTLLPLENGL 297 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEES---SSEEEEEETTTTCE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhe---eeEEEEEecCCCCe
Confidence 444444 4579999999999999999999988877652111 010011111 13444333 5689
Q ss_pred EEEEeCCCC
Q 035500 507 VRLFDLNHI 515 (606)
Q Consensus 507 IklWDl~~~ 515 (606)
.++|.+...
T Consensus 298 Fk~~~l~~~ 306 (729)
T 3f7f_A 298 FQMGTLLVD 306 (729)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEEEc
Confidence 999998653
No 500
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.68 E-value=3.7e+02 Score=30.05 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=40.3
Q ss_pred ceeEEEEcCCCCCEEEEEeCCCcEEEEECCCCceEEEEeccC----CCCCEEEEEEeeCCCCEEEEEE
Q 035500 439 RPRQFEYNPSNPSLMAFGTLDGEVIVINHENGNVACYIPSIG----GTNSVLGLCWLKKYPSKLVAGS 502 (606)
Q Consensus 439 rV~slafsP~dg~~LaSGs~DGtVrIWDi~tg~~v~~~~~~g----H~~~V~~L~fsp~~~~~LaSgS 502 (606)
+|..++++|.+++.+.++...|.|..++-....-.......+ ....|.+|+++|.+++.++.+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 378899999888888888877777666533222222111011 1246999999997666655554
Done!