BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035501
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/698 (73%), Positives = 580/698 (83%), Gaps = 25/698 (3%)
Query: 1 MTRMEDETENIGILSTDQGLEPFKDHFKYRMKRYVDQXXXXXXXXXXXXXFAKGYLEFGF 60
M + +E +++ I D LE FKDHF YR+KRY+DQ F+KGYL+FG
Sbjct: 1 MVTVVEEVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGI 60
Query: 61 NREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGS 120
N DG +YREWAPAA+EAQLIG+FN W+G+ HKME+++FG+WSI I GKPAIPH S
Sbjct: 61 NTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNS 120
Query: 121 RVKFRFKHDG-VFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYXXXXXXXX 179
+VKFRF+H G ++DRIPAWI+YAT D+S+FGAPYDGV+WDPP ERY FK+
Sbjct: 121 KVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDA 180
Query: 180 XXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNF 239
IYEAHVGMS EP V++YREFAD+VLPRIRANNYNTVQLMA+MEHSYYASFGYHVTNF
Sbjct: 181 PRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNF 240
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
FA SSRSGTPEDLKYL+DKAHSLGLRVL+D+VHSHASNNVTDGLNG+DVGQ++ ESYFHT
Sbjct: 241 FAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHT 300
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSF 359
GDRGYHKLWDSRLFNYANWEVLRFLLSNLR+W++EF FDGFRFDGVTSMLYHHHGIN F
Sbjct: 301 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGF 360
Query: 360 TGNYNEYFN------------------------ATVIAEDVSGMPGLGSPVSMGGIGFDY 395
TGNY EYF+ AT++AEDVSGMP L PV GG+GFD+
Sbjct: 361 TGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDF 420
Query: 396 RLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFL 455
RLAMAIPDRWIDYLKNK+D +WSM EI Q+LTNRRYTEKCI+YAESHDQ+IVGDKTIAFL
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 456 LMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 515
LMD+EMYTGMS L ASPTI RGI L KMIHFITMALGG+GYLNFMGNEFGHPEWIDFPR
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPR 540
Query: 516 EGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKV 575
EGN WSY+KCRRQW+LVD DHLRYK+MNAF +AMN L+++F FL+S+KQIVS NE+DKV
Sbjct: 541 EGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKV 600
Query: 576 IVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSP 635
IVFERGDLVFVFNFHP TY+GYKVGCDLPGKYRVALDSDA FGG GRVGH++DHFTSP
Sbjct: 601 IVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSP 660
Query: 636 EGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEESQE 673
EG+PGV ETNFNNRPNSF+VLSPPRT V YYRV+E +E
Sbjct: 661 EGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE 698
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/698 (73%), Positives = 580/698 (83%), Gaps = 25/698 (3%)
Query: 1 MTRMEDETENIGILSTDQGLEPFKDHFKYRMKRYVDQXXXXXXXXXXXXXFAKGYLEFGF 60
M + +E +++ I D LE FKDHF YR+KRY+DQ F+KGYL+FG
Sbjct: 1 MVTVVEEVDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGI 60
Query: 61 NREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGS 120
N DG +YREWAPAA+EAQLIG+FN W+G+ HKME+++FG+WSI I GKPAIPH S
Sbjct: 61 NTVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNS 120
Query: 121 RVKFRFKHDG-VFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYXXXXXXXX 179
+VKFRF+H G ++DRIPAWI+YAT D+S+FGAPYDGV+WDPP ERY FK+
Sbjct: 121 KVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDA 180
Query: 180 XXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNF 239
IYEAHVGMS EP V++YREFAD+VLPRIRANNYNTVQLMA+MEHSYYASFGYHVTNF
Sbjct: 181 PRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNF 240
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
FA SSRSGTPEDLKYL+DKAHSLGLRVL+D+VHSHASNNVTDGLNG+DVGQ++ ESYFHT
Sbjct: 241 FAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHT 300
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSF 359
GDRGYHKLWDSRLFNYANWEVLRFLLSNLR+W++EF FDGFRFDGVTSMLYHHHGIN F
Sbjct: 301 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGF 360
Query: 360 TGNYNEYFN------------------------ATVIAEDVSGMPGLGSPVSMGGIGFDY 395
TGNY EYF+ AT++AEDVSGMP L PV GG+GFD+
Sbjct: 361 TGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDF 420
Query: 396 RLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFL 455
RLAMAIPDRWIDYLKNK+D +WSM EI Q+LTNRRYTEKCI+YAESHDQ+IVGDKTIAFL
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 456 LMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR 515
LMD+EMYTGMS L ASPTI RGI L KMIHFITMALGG+GYLNFMGNEFGHPEWIDFPR
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPR 540
Query: 516 EGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKV 575
EGN WSY+KCRRQW+LVD DHLRYK+MNAF +AMN L+++F FL+S+KQIVS NE+DKV
Sbjct: 541 EGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKV 600
Query: 576 IVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSP 635
IVFERGDLVFVFNFHP TY+GYKVGCDLPGKYRVALDSDA FGG GRVGH++DHFTSP
Sbjct: 601 IVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSP 660
Query: 636 EGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEESQE 673
EG+PGV ETNFNNRPNSF+VLSPPRT V YYRV+E +E
Sbjct: 661 EGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDRE 698
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 170/652 (26%), Positives = 275/652 (42%), Gaps = 107/652 (16%)
Query: 66 GIVYREWAPAAKEAQLIGDFNGWDGSNHKME-RNEFGVWSISIPDSGGKPAIPH---GSR 121
G + WAP A+ ++G FN WDG H M R E G+W + IP + + +
Sbjct: 26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDAN 85
Query: 122 VKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYXXXXXXXXXX 181
R K D + A ++ T S G P V + E +
Sbjct: 86 GNLRLKSDPYAFE---AQMRPETA-SLICGLPEKVV--------QTEERKKANQFDAPIS 133
Query: 182 IYEAHVGMSSSEPRVN---SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTN 238
IYE H+G N SYRE AD ++P + + ++L+ + EH + S+GY T
Sbjct: 134 IYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTG 193
Query: 239 FFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH 298
+A + R GT +D +Y ID AH+ GL V++D V H + L FD Y H
Sbjct: 194 LYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTD-DFALAEFD----GTNLYEH 248
Query: 299 TGDR-GYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHG--- 354
+ R GYH+ W++ ++NY EV FL+ N +WIE F D R D V SM+Y +
Sbjct: 249 SDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKE 308
Query: 355 ---INMSFTGNYN----------------EYFNATVIAEDVSGMPGLGSPVSMGGIGFDY 395
I F G N + A +AE+ + PG+ P MGG+GF Y
Sbjct: 309 GEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
Query: 396 RLAMAIPDRWIDYLK-NKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAF 454
+ + +DY+K + ++ +++ + YTE + SHD+ + G K+I
Sbjct: 369 KWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGIL-YNYTENFV-LPLSHDEVVHGKKSI-L 425
Query: 455 LLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFP 514
M + + ++L + + A G+ L FMGNEF
Sbjct: 426 DRMPGDAWQKFANL--------------RAYYGWMWAFPGKKLL-FMGNEFA-------- 462
Query: 515 REGNEWSYEKCRRQWNLVDA----DHLRYKFMNAFG------RAMNELD-DKFPFLASTK 563
+G EW+++ W+L++ H + + +AM+ELD D + F
Sbjct: 463 -QGREWNHD-ASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGF----- 515
Query: 564 QIVSSTNEEDKVIVFERGD-----LVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWG 618
+ + ++E V++F R D ++ NF P ++ Y+ G + PGK+R L++D+
Sbjct: 516 EWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHD-YRFGINQPGKWREILNTDSMH 574
Query: 619 FGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEE 670
+ G G E + R +S + PP ++ R E
Sbjct: 575 YHGSN---------AGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE 617
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 173/657 (26%), Positives = 269/657 (40%), Gaps = 120/657 (18%)
Query: 60 FNREDG---GIVYREWAPAAKEAQLIGDFNGWDGSNHKME-RNEFGVWSISIPDSGGKPA 115
F DG G+ + WAP AK LIG+FNGW+G M GVW + PD
Sbjct: 128 FTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPD------ 181
Query: 116 IPHGSRVKFRFK-HDGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEF----- 169
P KFR DGV DR D FG S Y +
Sbjct: 182 FPCDGLYKFRVHGADGVVTDR---------ADPFAFGTEVPPQTASRVTSSDYTWGDDDW 232
Query: 170 ---KYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEH 226
+ YE H+G S P + SYR+ A ++ I + V+L+ V EH
Sbjct: 233 MAGRALRNPVNEAMSTYEVHLG--SWRPGL-SYRQLARELTDYIVDQGFTHVELLPVAEH 289
Query: 227 SYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGF 286
+ S+GY VT+++A +SR GTP+D + L+D H G+ V+VD V +H + L F
Sbjct: 290 PFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRF 348
Query: 287 DVGQSSQESYFHTG-DRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345
D Y H+ RG W + +F++ EV FL++N +W++EF DG R D V
Sbjct: 349 D----GTPLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAV 404
Query: 346 TSMLYH-------------HHGINMSFTGNYNEYFNAT---------VIAEDVSGMPGLG 383
SMLY H G + + NAT IAE+ + G+
Sbjct: 405 ASMLYLDYSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVT 464
Query: 384 SPVSMGGIGFDYRLAMAIPDRWIDYL-KNKKDEEWSMKEISQSLTNRRYTEKCISYAESH 442
P ++GG+GF + M +DY+ ++ + E++ S+ ++E + SH
Sbjct: 465 RPTNIGGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMTFSML-YAFSENYV-LPLSH 522
Query: 443 DQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMG 502
D+ + G T ++ M R + ++ H L FMG
Sbjct: 523 DEVVHGKGT---------LWGRMPGNNHVKAAGLRSLLAYQWAHPGKQLL-------FMG 566
Query: 503 NEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKF---PFL 559
EFG + EWS E+ W +D + F N R + +++D + P L
Sbjct: 567 QEFG---------QRAEWS-EQRGLDWFQLDEN----GFSNGIQRLVRDINDIYRCHPAL 612
Query: 560 ASTKQI------VSSTNEEDKVIVFER-----GDLVFVFNFHPENTYEGYKVGCDLPGKY 608
S + + + + V+ F R L VFNF + Y++G G++
Sbjct: 613 WSLDTTPEGYSWIDANDSANNVLSFMRYGSDGSVLACVFNF-AGAEHRDYRLGLPRAGRW 671
Query: 609 RVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETN--FNNRPNSFRVLSPPRTSV 663
R L++DA I H + + GV T+ ++ RP S ++ PP +++
Sbjct: 672 REVLNTDA-----------TIYHGSGIGNLGGVDATDDPWHGRPASAVLVLPPTSAL 717
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 182 IYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFA 241
YE HVG + E +YR A+ LP ++ +Q+M + +GY F+A
Sbjct: 129 FYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYA 184
Query: 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH--ASNNVTDGLNGFDVGQSSQESYFHT 299
+ G PEDL L+D AH LGL V +D+V++H S N S SYF
Sbjct: 185 PYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYL---------SSYAPSYFT- 234
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
DR + W L +YA + R++ N R W+ ++ FDG R D M
Sbjct: 235 -DR-FSSAWGMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP 117
F + + +++ WAP K +L + ++MER+E G ++I++
Sbjct: 2 FAYKIDGNEVIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITL---------- 47
Query: 118 HGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPY-----DGVYWDPPPS----ERYE 168
+ VK R ++ KY D+S P +GV+ PS E E
Sbjct: 48 --NNVKVRDRY------------KYVLDDASEIPDPASRYQPEGVH---GPSQIIQESKE 90
Query: 169 FKYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSY 228
F IYE HVG + E E L ++ +++M + +
Sbjct: 91 FNNETFLKKEDLIIYEIHVGTFTPEGTF----EGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288
+GY +A + G PE + L+D+AH GL V++D+V++H +G +
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG---PEGNYMVKL 203
Query: 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGV 345
G YF + Y W FN+ + EV +F+L N+ +WI+E+ DGFR D V
Sbjct: 204 G-----PYF---SQKYKTPW-GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAV 254
Query: 346 TSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFD 394
+++ + + +N VIAE P + +P G D
Sbjct: 255 HAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNID 303
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP 117
F + + +++ WAP K +L + ++MER+E G ++I++
Sbjct: 2 FAYKIDGNEVIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITL---------- 47
Query: 118 HGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPY-----DGVYWDPPPS----ERYE 168
+ VK R ++ KY D+S P +GV+ PS E E
Sbjct: 48 --NNVKVRDRY------------KYVLDDASEIPDPASRYQPEGVH---GPSQIIQESKE 90
Query: 169 FKYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSY 228
F IYE HVG + E E L ++ +++M + +
Sbjct: 91 FNNETFLKKEDLIIYEIHVGTFTPEGTF----EGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288
+GY +A + G PE + L+D+AH GL V++D+V++H +G +
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG---PEGNYMVKL 203
Query: 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGV 345
G YF + Y W FN+ + EV +F+L N+ +WI+E+ DGFR D V
Sbjct: 204 G-----PYF---SQKYKTPW-GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAV 254
Query: 346 TSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFD 394
+++ + + +N VIAE P + +P G D
Sbjct: 255 HAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKVGYNID 303
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP 117
F + + +++ WAP K +L + ++MER+E G ++I++
Sbjct: 2 FAYKIDGNEVIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITL---------- 47
Query: 118 HGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPY-----DGVYWDPPPS----ERYE 168
+ VK R ++ KY D+S P +GV+ PS E E
Sbjct: 48 --NNVKVRDRY------------KYVLDDASEIPDPASRYQPEGVH---GPSQIIQESKE 90
Query: 169 FKYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSY 228
F IYE HVG + E E L ++ +++M + +
Sbjct: 91 FNNETFLKKEDLIIYEIHVGTFTPEGTF----EGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288
+GY +A + G PE + L+D+AH GL V++D+V++H +G +
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG---PEGNYMVKL 203
Query: 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGV 345
G YF + Y W FN+ + EV +F+L N+ +WI+E+ DGFR D V
Sbjct: 204 G-----PYF---SQKYKTPW-GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAV 254
Query: 346 TSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFD 394
+++ + + +N VIA+ P + +P G D
Sbjct: 255 HAIIDTSPKHILEEIADVVHKYNRIVIAQSDLNDPRVVNPKEKCGYNID 303
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 59/349 (16%)
Query: 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP 117
F + + +++ WAP K +L + ++MER+E G ++I++
Sbjct: 2 FAYKIDGNEVIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITL---------- 47
Query: 118 HGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPY-----DGVYWDPPPS----ERYE 168
+ VK R ++ KY D+S P +GV+ PS E E
Sbjct: 48 --NNVKVRDRY------------KYVLDDASEIPDPASRYQPEGVH---GPSQIIQESKE 90
Query: 169 FKYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSY 228
F IYE HVG + E E L ++ +++M + +
Sbjct: 91 FNNETFLKKEDLIIYEIHVGTFTPEGTF----EGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288
+GY +A + G PE + L+D+AH GL V++D+V++H +G +
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG---PEGNYMVKL 203
Query: 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGV 345
G YF + Y W FN+ + EV +F+L N+ +WI+E+ DGFR + V
Sbjct: 204 G-----PYF---SQKYKTPW-GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAV 254
Query: 346 TSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFD 394
+++ + + +N VIAE P + +P G D
Sbjct: 255 HAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNID 303
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 141/349 (40%), Gaps = 59/349 (16%)
Query: 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP 117
F + + +++ WAP K +L + ++MER+E G ++I++
Sbjct: 2 FAYKIDGNEVIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITL---------- 47
Query: 118 HGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPY-----DGVYWDPPPS----ERYE 168
+ VK R ++ KY D+S P +GV+ PS E E
Sbjct: 48 --NNVKVRDRY------------KYVLDDASEIPDPASRYQPEGVH---GPSQIIQESKE 90
Query: 169 FKYXXXXXXXXXXIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSY 228
F IYE HVG + E E L ++ +++M + +
Sbjct: 91 FNNETFLKKEDLIIYEIHVGTFTPEGTF----EGVIRKLDYLKDLGITAIEIMPIAQFPG 146
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288
+GY +A + G PE + L+D+AH GL V++D+V++H +G +
Sbjct: 147 KRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVG---PEGNYMVKL 203
Query: 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGV 345
G YF + Y W FN+ + EV +F+L N+ +WI+E+ DGFR V
Sbjct: 204 G-----PYF---SQKYKTPW-GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAV 254
Query: 346 TSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFD 394
+++ + + +N VIAE P + +P G D
Sbjct: 255 HAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNID 303
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 182 IYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFA 241
YE HVG + E +YR A+ LP ++ +Q+ + +GY F+A
Sbjct: 129 FYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYA 184
Query: 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH--ASNNVTDGLNGFDVGQSSQESYFHT 299
+ G PEDL L+D AH LGL V +D+V++H S N S SYF
Sbjct: 185 PYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSGNYL---------SSYAPSYFT- 234
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345
DR + W L +YA R++ N R W+ ++ FDG R D
Sbjct: 235 -DR-FSSAWGXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLDAT 277
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 182 IYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFA 241
+YE H G + E ++R A LP + +++M V + +GY +A
Sbjct: 139 VYEMHTGTFTPE---GTFRA-AIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYA 194
Query: 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH--ASNNVTDGLNGFDVGQSSQESYFHT 299
S GTP+D K ID AH GL V++DIV +H N L ++FH
Sbjct: 195 PHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLL---------APAFFH- 244
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
+ W + + Y V R+++ +W+ E+ DG RFD + +
Sbjct: 245 --KERMTPWGNGI-AYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQI 290
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 119/310 (38%), Gaps = 50/310 (16%)
Query: 182 IYEAHVG------MSSSEPRVNSYREFA-DDVLPRIRANNYNTVQLMAVM---------E 225
IYE HV + E +Y A + ++ ++ TV+LM V +
Sbjct: 176 IYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTD 235
Query: 226 HSYYASFGYHVTNFFAASSR-------SGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
+GY NFF+ R G K ++++ H+ G+ V++D+V++H +
Sbjct: 236 KGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEG 295
Query: 279 VTDGLNGFDVGQSSQESYFHTGDRGYHKL---WDSRLFNYANWEVLRFLLSNLRWWIEEF 335
G G + Y D + L N ++ V++ +L +LR+W+ E
Sbjct: 296 NHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEM 355
Query: 336 KFDGFRFDGVTSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIGFDY 395
DGFRFD ++ + +NM N +F A +S + + P +G G+
Sbjct: 356 HVDGFRFDLAAALARELYSVNM-----LNTFFIALQQDPILSQVKLIAEPWDVGQGGYQ- 409
Query: 396 RLAMAIPDRWIDYLKNKKD--------EEWSMKEISQSLT--------NRRYTEKCISYA 439
P +W ++ +D E EI+ L N + I+Y
Sbjct: 410 --VGNFPYQWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYV 467
Query: 440 ESHDQAIVGD 449
SHD + D
Sbjct: 468 TSHDGFTLED 477
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y ++F G E LK LID+ H G+RV++D V +H + + G+SS+
Sbjct: 207 YDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSK 266
Query: 294 -ESYFHTGDRGYHKL----WDSRLF-------NYANWEVLRFLLSNLRWWIEEFKFDGFR 341
+ +FH + +D+ F N AN EV R+LL +WI EF DG+R
Sbjct: 267 YKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWR 326
Query: 342 FD 343
D
Sbjct: 327 LD 328
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y ++F G E LK LID+ H G+RV++D V +H + + G+SS+
Sbjct: 207 YDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSK 266
Query: 294 -ESYFHTGDRGYHKL----WDSRLF-------NYANWEVLRFLLSNLRWWIEEFKFDGFR 341
+ +FH + +D+ F N AN EV R+LL +WI EF DG+R
Sbjct: 267 YKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWR 326
Query: 342 FD 343
D
Sbjct: 327 LD 328
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 207 LPRIRANNYNTVQLMAVMEHSYYASFG-----YHVTNFFAASSRSGTPEDLKYLIDKAHS 261
L R++ NTV LM + G Y + +++ GT D K + +AH
Sbjct: 31 LERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYEIDLLIGTKGDFKKFVKRAHE 90
Query: 262 LGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRG--YHKL--W-DSRLFNYA 316
L + VL+D+V +HA+ + +V +F + G K+ W D F+Y+
Sbjct: 91 LNMYVLMDMVLNHAAVD--------NVLVKKHPEWFLRDENGNPTRKVPDWSDVVDFDYS 142
Query: 317 NWEVLRFLLSNLRWWIEEFKFDGFRFD 343
N E+ ++++ +R+W+EEF DGFR D
Sbjct: 143 NGELREYMINMMRYWVEEFDVDGFRCD 169
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y ++F G E LK L+ + H G+RV++D V +H + G +S+
Sbjct: 207 YDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASR 266
Query: 294 -ESYFHTGDRGYHKL----WDSRLF-------NYANWEVLRFLLSNLRWWIEEFKFDGFR 341
+ +FH + +D+ F N A+ EV R+LL +WI EF DG+R
Sbjct: 267 YKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWR 326
Query: 342 FD 343
D
Sbjct: 327 LD 328
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y ++F G E LK L+ + H G+RV++D V +H + G +S+
Sbjct: 207 YDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASR 266
Query: 294 -ESYFHTGDRGYHKL----WDSRLF-------NYANWEVLRFLLSNLRWWIEEFKFDGFR 341
+ +FH + +D+ F N A+ EV R+LL +WI EF DG+R
Sbjct: 267 YKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWR 326
Query: 342 FD 343
D
Sbjct: 327 LD 328
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 182 IYEAHV-GMSSSEPRV-----NSYREFADDVLPR-IRANNYNTVQLMAVMEHSYYASF-- 232
IYEAHV G++ P + +Y+ V+ ++ ++L+ V + +
Sbjct: 153 IYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQR 212
Query: 233 -------GYHVTNFFA-----ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT 280
GY+ FA A S ++ + I H G+ V++DIV +H++
Sbjct: 213 MGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDL 272
Query: 281 DG----LNGFDVGQSSQESYFHTGDRGYHKLWDS--RLFNYANWEVLRFLLSNLRWWIEE 334
DG L G D SY+ + G + W N ++ V+ + + LR+W+E
Sbjct: 273 DGPLFSLRGID-----NRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVET 327
Query: 335 FKFDGFRFDGVTSM 348
DGFRFD M
Sbjct: 328 CHVDGFRFDLAAVM 341
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT +D K LID AH+ ++V++D
Sbjct: 82 NIYSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V +M + M+ NY F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKNMPFGWQKSFMATINNYKPVF 253
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 125/327 (38%), Gaps = 59/327 (18%)
Query: 57 EFGFNREDGGI------VYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDS 110
EF ++ E G + V++ WAPAA A + G +M R E GV+++++
Sbjct: 99 EFYYDGELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGD 158
Query: 111 GGKPAIPHGSRVKFRFKHDGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFK 170
HG F ++ +++ + + K TV+ + GV P ++
Sbjct: 159 ------LHGYEYLFCICNNSEWMETVDQYAKAVTVNGEK------GVVLRPD-QMKWTAP 205
Query: 171 YXXXXXXXXXXIYEAHV---GMSSSEPRVNSYREFA------------DDVLPRIRANNY 215
IYE H+ + + +N + A L ++
Sbjct: 206 LKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGV 265
Query: 216 NTVQLMAVMEHSYYA--------SFGYHVTNFFAAS-SRSGTPED-------LKYLIDKA 259
V+L+ V + + ++GY+ +FFA S + P D LK +I+
Sbjct: 266 THVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTL 325
Query: 260 HSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWE 319
H GLRV++D+V +H + + YF D + + N E
Sbjct: 326 HQHGLRVILDVVFNHVYKRENSPF------EKTVPGYFFRHDECGKPSNGTGVGNDIASE 379
Query: 320 ---VLRFLLSNLRWWIEEFKFDGFRFD 343
+F+ + +W+EE+ DGFRFD
Sbjct: 380 RRMARKFIADCVVYWLEEYNVDGFRFD 406
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT +D K LID AH+ ++V++D
Sbjct: 82 NIYSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDLSTIENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVF 253
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT +D K LID AH+ ++V++D
Sbjct: 82 NIYSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVF 253
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT +D K LID AH+ ++V++D
Sbjct: 82 NIYSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVF 253
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT +D K LID AH+ ++V++D
Sbjct: 82 NIYSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVF 253
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y LWD
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLWDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 82/333 (24%)
Query: 72 WAPAA-KEAQLIGDFNGWDG--SNHKMERNEFGVWSISIPDSGGKPAIPH--GSRVKFRF 126
W+P+A K + ++ D N D +E+ E G W ++ DS K I G +++
Sbjct: 32 WSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTL-DSTNKLGITDFTGYYYQYQI 90
Query: 127 KHDGV-------FIDRIPAW-------------IKYATVDSSRFGAPYDGVYWDPPPSER 166
+ G + + AW K A VD ++ G P D Y +
Sbjct: 91 ERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLG-PQDLTY-----GKI 144
Query: 167 YEFKYXXXXXXXXXXIYEAHVGMSSSEPRV--------NSYREFADDVLPRIRANNYNTV 218
+ FK IYEAHV +S+P + ++ F + L ++ +
Sbjct: 145 HNFK-----TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHI 198
Query: 219 QLMAVMEH------------SYYAS------FGYHVTNFFAA----SSRSGTPE----DL 252
QL+ V+ + S YAS +GY N+F+ SS PE +
Sbjct: 199 QLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEF 258
Query: 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH--TGDRGYHKLWDS 310
K LI++ H G+ ++D+V++H + D+ + + +Y+H D +
Sbjct: 259 KNLINEIHKRGMGAILDVVYNHTAK--------VDLFEDLEPNYYHFMDADGTPRTSFGG 310
Query: 311 RLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343
+ R L+ ++++ ++ +K DGFRFD
Sbjct: 311 GRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFD 343
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 82/333 (24%)
Query: 72 WAPAA-KEAQLIGDFNGWDG--SNHKMERNEFGVWSISIPDSGGKPAIPH--GSRVKFRF 126
W+P+A K + ++ D N D +E+ E G W ++ DS K I G +++
Sbjct: 31 WSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTL-DSTNKLGITDFTGYYYQYQI 89
Query: 127 KHDGV-------FIDRIPAW-------------IKYATVDSSRFGAPYDGVYWDPPPSER 166
+ G + + AW K A VD ++ G P D Y +
Sbjct: 90 ERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLG-PQDLTY-----GKI 143
Query: 167 YEFKYXXXXXXXXXXIYEAHVGMSSSEPRV--------NSYREFADDVLPRIRANNYNTV 218
+ FK IYEAHV +S+P + ++ F + L ++ +
Sbjct: 144 HNFK-----TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHI 197
Query: 219 QLMAVMEH------------SYYAS------FGYHVTNFFAA----SSRSGTPE----DL 252
QL+ V+ + S YAS +GY N+F+ SS PE +
Sbjct: 198 QLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEF 257
Query: 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH--TGDRGYHKLWDS 310
K LI++ H G+ ++D+V++H + D+ + + +Y+H D +
Sbjct: 258 KNLINEIHKRGMGAILDVVYNHTAK--------VDLFEDLEPNYYHFMDADGTPRTSFGG 309
Query: 311 RLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343
+ R L+ ++++ ++ +K DGFRFD
Sbjct: 310 GRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFD 342
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 82/333 (24%)
Query: 72 WAPAA-KEAQLIGDFNGWDG--SNHKMERNEFGVWSISIPDSGGKPAIPH--GSRVKFRF 126
W+P+A K + ++ D N D +E+ E G W ++ DS K I G +++
Sbjct: 338 WSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTL-DSTNKLGITDFTGYYYQYQI 396
Query: 127 KHDGV-------FIDRIPAW-------------IKYATVDSSRFGAPYDGVYWDPPPSER 166
+ G + + AW K A VD ++ G P D Y +
Sbjct: 397 ERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLG-PQDLTY-----GKI 450
Query: 167 YEFKYXXXXXXXXXXIYEAHVGMSSSEPRV--------NSYREFADDVLPRIRANNYNTV 218
+ FK IYEAHV +S+P + ++ F + L ++ +
Sbjct: 451 HNFK-----TREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHI 504
Query: 219 QLMAVMEH------------SYYAS------FGYHVTNFFAA----SSRSGTPE----DL 252
QL+ V+ + S YAS +GY N+F+ SS PE +
Sbjct: 505 QLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEF 564
Query: 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH--TGDRGYHKLWDS 310
K LI++ H G+ ++D+V++H + D+ + + +Y+H D +
Sbjct: 565 KNLINEIHKRGMGAILDVVYNHTAK--------VDLFEDLEPNYYHFMDADGTPRTSFGG 616
Query: 311 RLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343
+ R L+ ++++ ++ +K DGFRFD
Sbjct: 617 GRLGTTHHMTKRLLIDSIKYLVDTYKVDGFRFD 649
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y + ++ + GT D K L D+AH LG++V++DIV++H S + +
Sbjct: 68 YAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSV-------LATEHP 120
Query: 294 ESYFHTGD-RGYHKL--W-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343
E ++H D + +K+ W D + +Y + E+ ++ + L +W +F DG+R D
Sbjct: 121 EWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW-SQF-VDGYRCD 172
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTG--------DRGYHKLWDSR 311
+H S +D NG +D G +Q + H G D Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSSYEDGIYRNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 230 ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN----------- 278
A GY +++++A GT +D L+ +AH GL+V++D+V +H S+
Sbjct: 59 ADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSR 118
Query: 279 ---------VTDGLNGFD-------VGQSSQESYFHTGDRGYHKLWDSRL--FNYANWEV 320
DG +G + G S+ + TG H ++D + N+ N EV
Sbjct: 119 DNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLH-IFDVKQPDLNWENSEV 177
Query: 321 LRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
+ L + WW+++ DGFR D ++ +
Sbjct: 178 RQALYEMVNWWLDK-GIDGFRIDAISHI 204
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 220 LMAVMEHSYYASFGYH---VTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276
+ +V+ +S + YH +F + GT +D K LID AH+ ++V++D +H S
Sbjct: 83 IYSVINYSGVNNTAYHGLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTS 142
Query: 277 NNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSRLFNY 315
+D NG +D G +Q + H G Y L+D N+
Sbjct: 143 PASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNH 202
Query: 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 203 NNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVF 253
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 26/157 (16%)
Query: 216 NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275
N + LM + + Y GY VT+++ + GT ED L++ AH G++V++D+ +H
Sbjct: 50 NGIWLMPIFKSPSYH--GYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHT 107
Query: 276 SNNVTDGLNGFDVGQSSQESYF--------------------HTGDRG--YHKLWDSRL- 312
S L S Y+ H G Y W
Sbjct: 108 SERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPD 167
Query: 313 FNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSML 349
NY N EV ++ ++W+++ DGFR DG +
Sbjct: 168 LNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIF 203
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
Y ++F + G + LK L+D H G+RVL+D V +H+ ++ G+ S+
Sbjct: 203 YDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSK 262
Query: 294 -ESYFHTGDRGYHKL-----WDSRLF-------NYANWEVLRFLLSNLRWWIEEFKFDGF 340
+ +FH + +D+ F N + +V +LL +WI E DG+
Sbjct: 263 YKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N + T+ V +Y+ GY +F + GT D + LI AH+ G+++++D
Sbjct: 82 NIFATINYSGVTNTAYH---GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAP 138
Query: 273 SHAS-NNVTDGL---NGFDVGQSSQES--YFH--------TGDRG-YHKLWDSRLFNYAN 317
+H S + +G NG VG + ++ YFH + + G Y L+D FN+ N
Sbjct: 139 NHTSPADAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNN 198
Query: 318 WEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
+ ++ ++ W+ + DG R D V M
Sbjct: 199 ATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 228
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 22/156 (14%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS-------NNVTDGL-- 283
GY +F + GT D + L+D AH+ G++V++D +H S + + +G
Sbjct: 95 GYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
Query: 284 -NGFDVGQSSQES--YFHTG---------DRGYHKLWDSRLFNYANWEVLRFLLSNLRWW 331
NG +G + ++ YFH D Y L+D N+ N + R+L ++ W
Sbjct: 155 DNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW 214
Query: 332 IEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
I + DG R D V M + M NY F
Sbjct: 215 I-DMGIDGIRMDAVKHMPFGWQKSLMDEIDNYRPVF 249
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTDGL----------NGFDVGQSSQESY----------FHTGDRG-YHKLWDSR 311
+H S +D NG +G + ++ F T + G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNLGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTDGL----------NGFDVGQSSQESY----------FHTGDRG-YHKLWDSR 311
+H S +D NG +G + ++ F T + G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTDGL----------NGFDVGQSSQESY----------FHTGDRGYHK-LWDSR 311
+H S +D NG +G + ++ F T + G +K L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKGLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLFDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLLDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N + T+ V +Y+ GY +F + GT D + LI AH+ G+++++D
Sbjct: 82 NIFATINYSGVTNTAYH---GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAP 138
Query: 273 SHASNNV-TDGL---------NGFDVGQSSQES--YFH--------TGDRG-YHKLWDSR 311
+H S + TD NG VG + ++ YFH + + G Y L+D
Sbjct: 139 NHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
FN+ N + ++ ++ W+ + DG R D V M
Sbjct: 199 DFNHNNATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 234
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N + T+ V +Y+ GY +F + GT D + LI AH+ G+++++D
Sbjct: 82 NIFATINYSGVTNTAYH---GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAP 138
Query: 273 SHASNNV-TDGL---------NGFDVGQSSQES--YFH--------TGDRG-YHKLWDSR 311
+H S + TD NG VG + ++ YFH + + G Y L+D
Sbjct: 139 NHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
FN+ N + ++ ++ W+ + DG R D V M
Sbjct: 199 DFNHNNATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 234
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLGDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINDSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V+++
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIINFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R + V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 182 IYEAHVGMSSSEPRV-----NSYREFA--DDVLPRIRANNYNTVQLMAVMEHSY------ 228
IYEAHV +S+ + N FA + L ++ +QL+ V+ + Y
Sbjct: 270 IYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDK 329
Query: 229 -----YAS------FGYHVTNFFAASSR-SGTPED-------LKYLIDKAHSLGLRVLVD 269
Y S +GY ++FA S S P+D LK LI H G+ V++D
Sbjct: 330 SRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILD 389
Query: 270 IVHSHASNNVTDGLNGFDVGQSSQESYFH--TGDRGYHKLWDSRLFNYANWEVLRFLLSN 327
+V++H + + + + +Y+H D + + + R L+ +
Sbjct: 390 VVYNHTAKTY--------LFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDS 441
Query: 328 LRWWIEEFKFDGFRFD 343
+++ EFK DGFRFD
Sbjct: 442 IKYLTSEFKVDGFRFD 457
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRL 312
+ ++ + +GLRV++D+V++H ++ G++ V Y+ D + +
Sbjct: 382 RQMVQALNRIGLRVVMDVVYNHLDSSGPCGISS--VLDKIVPGYYVRRDTNGQIENSAAM 439
Query: 313 FNYAN--WEVLRFLLSNLRWWIEEFKFDGFRFD---------------GVTSMLYHHHGI 355
N A+ + V R ++ +L W +K DGFRFD + S+ HG+
Sbjct: 440 NNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSLTTDAHGV 499
Query: 356 NMSFTGNYNEYFNATVIAEDVSGMPGLGSPVSMGGIG-FDYRLAMAI 401
+ S Y E ++ +A + G+ G +S GIG F+ R+ AI
Sbjct: 500 DGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAI 546
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIAFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R D V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N Y+ + V +Y+ GY +F + GT D + LI AH+ ++V++D
Sbjct: 82 NIYSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAP 138
Query: 273 SHASNNVTD----GLNG--FDVG-------QSSQESYFHTGDRG--------YHKLWDSR 311
+H S +D NG +D G +Q + H G Y L+D
Sbjct: 139 NHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367
N+ N V +L ++ W+ + DG R V M + M+ NY F
Sbjct: 199 DLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMAAVKHMPFGWQKSFMAAVNNYKPVF 253
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N + T+ V +Y+ GY +F + GT D + LI AH+ G+++++D
Sbjct: 82 NIFATINYSGVTNTAYH---GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAP 138
Query: 273 SHASNNV-TDGL---------NGFDVGQSSQES--YFH--------TGDRG-YHKLWDSR 311
+H S + TD NG VG + ++ YFH + + G Y +D
Sbjct: 139 NHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
FN+ N + ++ ++ W+ + DG R D V M
Sbjct: 199 DFNHNNATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 234
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 120/314 (38%), Gaps = 59/314 (18%)
Query: 69 YREWAPAAKEAQLIGDFNGWDGSNHK---MERNEFGVWSISIPDSGGKPAIPHGSRVKFR 125
+R WAP A QL+ +N GS K M++++ G W + + SG ++
Sbjct: 329 FRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQV--SGNL----ENWYYLYQ 381
Query: 126 FKHDGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYXXXXXXXXXXIYEA 185
+G + + + +V+++R G D DP + + IYEA
Sbjct: 382 VTVNGTTQTAVDPYARAISVNATR-GMIVDLKATDPAGWQGDHEQ--TPANPVDEVIYEA 438
Query: 186 HV-----GMSSSEPRVNSYREFA-------DDV---LPRIRANNYNTVQLMAVMEHSY-- 228
HV +S Y F D V + ++ TVQL V E +
Sbjct: 439 HVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSID 498
Query: 229 ----------YASFGYHVTNFFAASSRSGTPE--DLKYLIDKAHSLGLRVLVDIVHSHAS 276
Y Y+V A++ GT +LK LI H + V +D+V++H
Sbjct: 499 ETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHT- 557
Query: 277 NNVTDGLNGFDVGQSS-----QESYFHTGDRGYHKLWDSRLFNYANWEVL--RFLLSNLR 329
FDV S + Y+ T G + +A + +F+L ++
Sbjct: 558 ---------FDVMVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKFVLDSVN 608
Query: 330 WWIEEFKFDGFRFD 343
+W+ E+ DGFRFD
Sbjct: 609 YWVNEYHVDGFRFD 622
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 213 NNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272
N + T+ V +Y+ GY +F + GT D + LI AH+ G+++++D
Sbjct: 82 NIFATINYSGVTNTAYH---GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAP 138
Query: 273 SHASNNV-TDGL---------NGFDVGQSSQES--YFH--------TGDRG-YHKLWDSR 311
+H S + TD NG VG + ++ YFH + + G Y L+D
Sbjct: 139 NHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLA 198
Query: 312 LFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348
FN+ N + ++ ++ W+ + DG R V M
Sbjct: 199 DFNHNNATIDKYFKDAIKLWL-DMGVDGIRVAAVKHM 234
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY + N+ GT ED LI+K H LG++ + D+V +H S+
Sbjct: 71 GYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSS 115
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY + N+ GT ED LI+K H LG++ + D+V +H S+
Sbjct: 71 GYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSS 115
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + YA N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETYAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 38/181 (20%)
Query: 183 YEAHVGMSSSE-PRVNSYREFADDVLPRIRAN-NYNTVQLMAVMEHSYYASFGYHVTNFF 240
Y A +G+++ E V + A+DV+P AN NY +GY N+F
Sbjct: 213 YLASLGVTAVEFLPVQETQNDANDVVPNSDANQNY----------------WGYMTENYF 256
Query: 241 AASSR-------SGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ 293
+ R G + + ++ H+ G++V +D+V++H + T D ++
Sbjct: 257 SPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGT--WTSSDPTTATI 314
Query: 294 ESYFHTGDRGYHKLWDSRL-----------FNYANWEVLRFLLSNLRWWIEEFKFDGFRF 342
S+ + Y++L FN N ++ +L +W DGFRF
Sbjct: 315 YSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRF 374
Query: 343 D 343
D
Sbjct: 375 D 375
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 230 ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG 289
A+ YH ++F G E L++L++ AH+ G+RV++D V +H + + G
Sbjct: 77 ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENG 136
Query: 290 -QSSQESYFH---------TGDRGYHKLWDSRLFNYANWE---VLRFLLSNLRWWIEEFK 336
QS ++H T Y W + E V +LL+ WI F
Sbjct: 137 EQSPYRDWYHVKGFPLKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFG 195
Query: 337 FDGFRFD 343
DG+R D
Sbjct: 196 VDGWRLD 202
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETAAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R D
Sbjct: 323 RLD 325
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS----NNVTDGLNG--F 286
GY +F + G+ D + LI+ AH+ ++V++D +H S + T NG +
Sbjct: 100 GYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159
Query: 287 DVG------QSSQESYFH---------TGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWW 331
D G + YFH D Y L+D N N + +L S ++ W
Sbjct: 160 DNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW 219
Query: 332 IEEFKFDGFRFDGVTSM 348
+ + DG R D V M
Sbjct: 220 L-DMGIDGIRLDAVKHM 235
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN--------VT 280
Y+ GY T+ + R G+ ED L +A G+ ++ D+V SH +
Sbjct: 178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTP 237
Query: 281 DGLN---GFDVGQ----SSQESYFHTGD-RGYHKLW---DSRLFNYANWEVLRFLLSNLR 329
D +N F Q + Q+ Y D + K W N N V +L+ N
Sbjct: 238 DWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNI 297
Query: 330 WWIEEFKFDGFRFD 343
WWIE G R D
Sbjct: 298 WWIEYAGLSGLRID 311
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN--------VT 280
Y+ GY T+ + R G+ ED L +A G+ ++ D+V SH +
Sbjct: 178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTP 237
Query: 281 DGLN---GFDVGQ----SSQESYFHTGD-RGYHKLW---DSRLFNYANWEVLRFLLSNLR 329
D +N F Q + Q+ Y D + K W N N V +L+ N
Sbjct: 238 DWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNI 297
Query: 330 WWIEEFKFDGFRFD 343
WWIE G R D
Sbjct: 298 WWIEYAGLSGLRID 311
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R +
Sbjct: 323 RLN 325
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVG-QSS 292
Y ++ A + G + L+D+AH G+++++D V +HA + + G QS
Sbjct: 204 YDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSR 263
Query: 293 QESYFHTGDRGYHKLWDSRLFNYA------------NWEVLRFLLSNLRWWIEEFKFDGF 340
+ +F D K + +A N EV +L R+W+E+ DG+
Sbjct: 264 YKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGW 322
Query: 341 RFD 343
R +
Sbjct: 323 RLN 325
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN--------VT 280
Y+ GY T+ + R G+ ED L +A G+ ++ D+V SH +
Sbjct: 178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTP 237
Query: 281 DGLN---GFDVGQ----SSQESYFHTGD-RGYHKLW---DSRLFNYANWEVLRFLLSNLR 329
D +N F Q + Q+ Y D + K W N N V +L+ N
Sbjct: 238 DWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNI 297
Query: 330 WWIEEFKFDGFRFD 343
WWIE G R D
Sbjct: 298 WWIEYAGLSGLRID 311
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS----NNVTDGLNG--F 286
GY +F + G+ D + LI+ AH+ ++V++D +H S + T NG +
Sbjct: 100 GYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159
Query: 287 DVG------QSSQESYFH---------TGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWW 331
D G + YFH D Y L+D N N + +L S ++ W
Sbjct: 160 DNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW 219
Query: 332 IEEFKFDGFRFDGVTSM 348
+ + DG R D V M
Sbjct: 220 L-DMGIDGIRLDAVKHM 235
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275
GY VT++ + + GT D L+ +AH+ G+++ +D V +H
Sbjct: 90 GYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVXNHT 132
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275
GY VT++ + + GT D L+ +AH+ G+++ +D V +H
Sbjct: 90 GYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHT 132
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG ++ + ++ + +++G+R+ VD V +H N S+ SYF+
Sbjct: 67 YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGT-----SSTCGSYFNP 121
Query: 300 GDRGY 304
G R +
Sbjct: 122 GSRDF 126
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 230 ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274
A GY T+ ++ + GT +DLK L H G+ ++VD+V +H
Sbjct: 78 AYTGYWQTDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 222 AVMEHSYYAS----FGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
A+ + +YAS GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 48 AIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSD 107
Query: 278 N--------------------VTDGLNGFD-------VGQSSQESYFHTGDRGYHKLWDS 310
DG +G + G S+ E TG H L
Sbjct: 108 QHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQYYLHYL--G 165
Query: 311 RLFNYANWEVLRF---LLSNLRWWIEEFKFDGFRFDGVTS 347
R NW+ + L + LR+W+++ G RFD V +
Sbjct: 166 RQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVAT 204
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 34/128 (26%)
Query: 244 SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS------NNVTDGLNGFDVGQSSQESY- 296
+R G+ E+L LI AH+ G++V+ D+V +H + N D + + Y
Sbjct: 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYT 140
Query: 297 ----------FHTGDRG---------YHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKF 337
H D G +HK WD Y W+ + LR F
Sbjct: 141 ANYLDFHPNELHCCDEGTFGGFPDICHHKEWD----QYWLWKSNESYAAYLR----SIGF 192
Query: 338 DGFRFDGV 345
DG+RFD V
Sbjct: 193 DGWRFDYV 200
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 229 YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN--------VT 280
Y+ GY T+ + R G+ ED L +A G ++ D+V SH +
Sbjct: 178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGXGLIQDVVLSHIGKHHWWXKDLPTP 237
Query: 281 DGLN---GFDVGQ----SSQESYFHTGD-RGYHKLW---DSRLFNYANWEVLRFLLSNLR 329
D +N F Q + Q+ Y D + K W N N V +L+ N
Sbjct: 238 DWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEGXPDLNQTNPLVANYLIQNNI 297
Query: 330 WWIEEFKFDGFRFD 343
WWIE G R D
Sbjct: 298 WWIEYAGLSGLRID 311
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 234 YHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNV------------TD 281
YH +++ G E K L+D AH ++V++D V +H+S +
Sbjct: 87 YHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSP 146
Query: 282 GLNGFDVGQSSQESYFHTGDRGYHKLWDSRL---FNYANWEVLRFLLSNLRWWIEEFKFD 338
+N F + Y Y +R FN+ N EV +++ +W+ +F D
Sbjct: 147 WVNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGID 205
Query: 339 GFRFD 343
G+R D
Sbjct: 206 GWRLD 210
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 107
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 107
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 63 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 108
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 63 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 108
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 107
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
GY ++++ GT ED L+ + G+R++VD+V +H+S+
Sbjct: 90 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 135
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY ++++ A + GT D+ LI KA +++++D+V +H S+
Sbjct: 63 GYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSD 107
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH---ASNNVTDGLNGFDVG 289
GY + +S GT ++LK L D H+ G+ ++VD+V H A N + FD
Sbjct: 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPF 140
Query: 290 QSSQESYFH 298
SS SYFH
Sbjct: 141 DSS--SYFH 147
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 231 SFGYHVTNFF---------AASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274
S GY +FF +R G+ ++L +I+ AH+ G++V+ DIV +H
Sbjct: 59 SMGYDPYDFFDLGEYDQKGTVETRFGSKQELVNMINTAHAYGMKVIADIVINH 111
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSS 292
GY + N+ A + G D+ L+ +A G+++++D+V +H S+ + + SS
Sbjct: 62 GYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSS 121
Query: 293 QESYFHTGDR 302
+ Y+ D+
Sbjct: 122 ERDYYIWCDQ 131
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY ++N+ GT ED L+ + +R+++D+V +H S+
Sbjct: 76 GYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSD 120
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSS 292
GY + N+ A + G D+ L+ +A G+++++D+V +H S+ + + SS
Sbjct: 62 GYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSS 121
Query: 293 QESYFHTGDR 302
+ Y+ D+
Sbjct: 122 ERDYYIWCDQ 131
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 38/172 (22%)
Query: 204 DDVLPRIRANN------YNTVQLMAVMEHSY---YASFGYHVTNFFAASSRSGTP--EDL 252
++VL +++ N+ + + SY Y F Y V A+ GT ++
Sbjct: 525 EEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEF 584
Query: 253 KYLIDK-AHSLGLRVLVDIVHSHAS-------NNVTDGL-----NGFDVGQSSQESYFHT 299
+ +I LG+ V++D+V++H + +V D + + S ES
Sbjct: 585 RTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCC 644
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYH 351
D R+F + + +L W ++K DGFRFD MLYH
Sbjct: 645 SDSAPEH----RMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 682
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 56 LEFGFNREDGGIVYREWAPAAKEAQL-IGDFNGWDGSNHKMERNEF-GVWS 104
L +G D G+ +R WAP A++ +L I + ++H M R+ G WS
Sbjct: 295 LSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWS 345
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 204 DDVLPRIRANN------YNTVQLMAVMEHSY---YASFGYHVTNFFAASSRSGTP--EDL 252
++VL +++ N+ + + SY Y F Y V A+ GT ++
Sbjct: 362 EEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEF 421
Query: 253 KYLIDK-AHSLGLRVLVDIVHSHAS-------NNVTDGL-----NGFDVGQSSQESYFHT 299
+ +I LG+ V++D+V++H + +V D + + S ES
Sbjct: 422 RTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCC 481
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYH 351
D + R+F + + +L W ++K DGFRFD MLYH
Sbjct: 482 SDSAP----EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 519
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 56 LEFGFNREDGGIVYREWAPAAKEAQL-IGDFNGWDGSNHKMERNEF-GVWS 104
L +G D G+ +R WAP A++ +L I + ++H M R+ G WS
Sbjct: 132 LSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWS 182
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 204 DDVLPRIRANN------YNTVQLMAVMEHSY---YASFGYHVTNFFAASSRSGTP--EDL 252
++VL +++ N+ + + SY Y F Y V A+ GT ++
Sbjct: 364 EEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEF 423
Query: 253 KYLIDK-AHSLGLRVLVDIVHSHAS-------NNVTDGL-----NGFDVGQSSQESYFHT 299
+ +I LG+ V++D+V++H + +V D + + S ES
Sbjct: 424 RTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCC 483
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYH 351
D + R+F + + +L W ++K DGFRFD MLYH
Sbjct: 484 SDSAP----EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 521
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 56 LEFGFNREDGGIVYREWAPAAKEAQL-IGDFNGWDGSNHKMERNEF-GVWS 104
L +G D G+ +R WAP A++ +L I + ++H M R+ G WS
Sbjct: 134 LSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWS 184
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 204 DDVLPRIRANN------YNTVQLMAVMEHSY---YASFGYHVTNFFAASSRSGTP--EDL 252
++VL +++ N+ + + SY Y F Y V A+ GT ++
Sbjct: 368 EEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEF 427
Query: 253 KYLIDK-AHSLGLRVLVDIVHSHAS-------NNVTDGL-----NGFDVGQSSQESYFHT 299
+ +I LG+ V++D+V++H + +V D + + S ES
Sbjct: 428 RTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCC 487
Query: 300 GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYH 351
D + R+F + + +L W ++K DGFRFD MLYH
Sbjct: 488 SDSAP----EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 525
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 56 LEFGFNREDGGIVYREWAPAAKEAQL-IGDFNGWDGSNHKMERNEF-GVWS 104
L +G D G+ +R WAP A++ +L I + ++H M R+ G WS
Sbjct: 138 LSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWS 188
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 150 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 194
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY V+++ + GT DL+ +I H G+ +VD + +H SN
Sbjct: 146 GYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDFIFNHTSN 190
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY ++++ + GT ED L+ + H +++++D+V +H S+
Sbjct: 62 GYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTSD 106
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 287 DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346
D +S Q +R + +RL Y N+E L ++ ++ + + VT
Sbjct: 524 DYKRSIQRGILLLSNRLGQLVDLTRLLAY-NYETLMACVTMNMQHVQTLTTEKLQLTSVT 582
Query: 347 SM---------------LYHHHGINMSFTGNYNEYFNATV 371
S+ L+H++ +N++F NYNE N V
Sbjct: 583 SLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAV 622
>pdb|3N09|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|B Chain B, Atomic Model Of An Infectious Rotavirus Particle
Length = 800
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 287 DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346
D +S Q +R + +RL Y N+E L ++ ++ + + VT
Sbjct: 444 DYKRSIQRGILLLSNRLGQLVDLTRLLAY-NYETLMACITMNMQHVQTLTTEKLQLTSVT 502
Query: 347 SM---------------LYHHHGINMSFTGNYNEYFNATV 371
S+ L+H++ +N++F NYNE N V
Sbjct: 503 SLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAV 542
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 230 ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274
A GY + ++ + GT +DLK L H G+ ++VD+V +H
Sbjct: 78 AYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 233 GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277
GY + ++ GT ED LI + +R+++D+V +H S+
Sbjct: 62 GYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTSD 106
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 220 LMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278
L V+ S ++ GY V + + G ++ + LI+ AH++GL ++ DIV +H + N
Sbjct: 36 LSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVN 94
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 287 DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346
D +S Q +R + +RL Y N+E L ++ ++ + + VT
Sbjct: 444 DYKRSIQRGILLLSNRLGQLVDLTRLLAY-NYETLMACVTMNMQHVQTLTTEKLQLTSVT 502
Query: 347 SM---------------LYHHHGINMSFTGNYNEYFNATV 371
S+ L+H++ +N++F NYNE N V
Sbjct: 503 SLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAV 542
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 243 SSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDR 302
+S+ G LK LI H G++ + DIV +H + DG + + + D
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPD--ARLDW 118
Query: 303 GYHKLW-DSRLF-------------------NYANWEVLRFLLSNLRWWIEEFKFDGFRF 342
G H + D R + ++ N V + L+ L W + FDG+RF
Sbjct: 119 GPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRF 178
Query: 343 D 343
D
Sbjct: 179 D 179
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 230 ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276
++ GY V ++ + G E+ LID+A S GL ++ DIV +H +
Sbjct: 44 STHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G+R + + WD
Sbjct: 122 GNREFPAVPYSAWD 135
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G+R + + WD
Sbjct: 122 GNREFPAVPYSAWD 135
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G+R + + WD
Sbjct: 122 GNREFPAVPYSAWD 135
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G+R + + WD
Sbjct: 122 GNREFPAVPYSAWD 135
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 48/192 (25%)
Query: 217 TVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276
T+ L + + Y Y ++ + GT ED + L+ HS +++++DI H +
Sbjct: 281 TIYLTPIFSSTSYHR--YDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTN 338
Query: 277 -----------------------------NNVTDGLNGFDVGQSSQESYFHTGD------ 301
+ + + + G+ + + D
Sbjct: 339 PCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRSRELYKLDYFRNNK 398
Query: 302 ---RGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMS 358
+ +W FN+ N + + + ++WI++ DGFR D GI+ S
Sbjct: 399 PFYEAFFNIWLMAKFNHDNPRTVDYFIDITKFWIDK-GIDGFRIDVAM-------GIHYS 450
Query: 359 FTGNYNEYFNAT 370
+ Y EY T
Sbjct: 451 WMKQYYEYIKNT 462
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 240 FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT 299
+ +RSG + + ++ + +++G+R+ VD V +H + G G SY +
Sbjct: 67 YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCG-----SYCNP 121
Query: 300 GDRGY----HKLWD 309
G R + + WD
Sbjct: 122 GSREFPAVPYSAWD 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,840,244
Number of Sequences: 62578
Number of extensions: 1081313
Number of successful extensions: 2598
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2369
Number of HSP's gapped (non-prelim): 219
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)