Query 035501
Match_columns 732
No_of_seqs 431 out of 3337
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 8E-140 2E-144 1200.2 67.9 666 2-678 51-741 (758)
2 PLN03244 alpha-amylase; Provis 100.0 1E-112 2E-117 954.0 55.2 599 21-668 86-867 (872)
3 PLN02960 alpha-amylase 100.0 2E-111 3E-116 963.8 58.3 628 21-668 83-892 (897)
4 KOG0470 1,4-alpha-glucan branc 100.0 2E-105 5E-110 882.3 43.6 646 12-669 59-754 (757)
5 PRK12568 glycogen branching en 100.0 2E-100 4E-105 874.9 55.4 562 48-668 112-729 (730)
6 PRK14706 glycogen branching en 100.0 8E-100 2E-104 873.4 55.8 567 53-680 22-634 (639)
7 PRK14705 glycogen branching en 100.0 3.7E-98 8E-103 892.6 55.3 559 47-668 607-1223(1224)
8 PRK12313 glycogen branching en 100.0 1.5E-93 3.2E-98 832.2 55.8 559 53-670 22-630 (633)
9 PRK05402 glycogen branching en 100.0 1.8E-92 3.8E-97 832.0 57.0 558 52-668 114-724 (726)
10 TIGR01515 branching_enzym alph 100.0 7.7E-93 1.7E-97 820.8 52.3 551 54-666 13-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 4.4E-90 9.5E-95 771.9 38.5 557 54-666 22-627 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 1.1E-78 2.5E-83 703.2 47.3 506 57-617 11-601 (605)
13 TIGR02100 glgX_debranch glycog 100.0 1.5E-77 3.2E-82 695.4 53.0 543 55-667 4-688 (688)
14 PRK03705 glycogen debranching 100.0 5.9E-77 1.3E-81 685.2 49.1 512 55-615 9-634 (658)
15 TIGR02102 pullulan_Gpos pullul 100.0 8.5E-75 1.8E-79 688.7 56.0 560 57-669 318-1006(1111)
16 TIGR02402 trehalose_TreZ malto 100.0 7.8E-74 1.7E-78 652.1 43.7 463 67-592 1-537 (542)
17 TIGR02103 pullul_strch alpha-1 100.0 4.7E-71 1E-75 645.7 46.9 493 57-592 127-845 (898)
18 PLN02877 alpha-amylase/limit d 100.0 6.3E-70 1.4E-74 633.5 46.8 502 57-604 214-924 (970)
19 PRK14510 putative bifunctional 100.0 7.2E-66 1.6E-70 627.6 45.1 466 55-563 13-576 (1221)
20 COG1523 PulA Type II secretory 100.0 2.2E-64 4.8E-69 574.1 43.7 535 55-668 17-692 (697)
21 PRK10785 maltodextrin glucosid 100.0 2.5E-58 5.4E-63 531.9 41.9 459 63-590 17-559 (598)
22 TIGR02456 treS_nterm trehalose 100.0 9.1E-56 2E-60 506.7 33.4 444 176-666 2-537 (539)
23 PRK10933 trehalose-6-phosphate 100.0 2.1E-54 4.6E-59 493.7 36.6 407 175-614 6-527 (551)
24 TIGR02403 trehalose_treC alpha 100.0 1.3E-54 2.9E-59 496.1 34.8 406 177-614 2-521 (543)
25 PRK09505 malS alpha-amylase; R 100.0 4.9E-52 1.1E-56 478.2 31.6 364 174-589 184-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 1.9E-50 4.2E-55 457.2 32.0 373 198-666 20-479 (479)
27 PLN00196 alpha-amylase; Provis 100.0 6.9E-44 1.5E-48 393.3 27.5 316 197-590 41-402 (428)
28 PF00128 Alpha-amylase: Alpha 100.0 5.5E-45 1.2E-49 390.0 12.6 272 197-508 1-311 (316)
29 PLN02361 alpha-amylase 100.0 1.3E-41 2.8E-46 370.7 31.6 334 198-615 27-394 (401)
30 PRK13840 sucrose phosphorylase 100.0 1.6E-37 3.4E-42 344.1 25.9 371 197-592 17-469 (495)
31 PLN02784 alpha-amylase 100.0 8E-37 1.7E-41 348.8 28.1 331 179-587 498-865 (894)
32 TIGR03852 sucrose_gtfA sucrose 100.0 9.8E-38 2.1E-42 343.7 19.8 369 193-592 13-463 (470)
33 COG0366 AmyA Glycosidases [Car 100.0 6.6E-37 1.4E-41 350.5 26.4 384 180-592 1-486 (505)
34 KOG0471 Alpha-amylase [Carbohy 100.0 1.6E-34 3.5E-39 328.8 25.0 400 176-592 14-506 (545)
35 TIGR02455 TreS_stutzeri trehal 100.0 2.1E-33 4.6E-38 311.4 32.5 449 178-669 50-683 (688)
36 TIGR02401 trehalose_TreY malto 100.0 9.5E-31 2.1E-35 302.5 28.2 172 197-374 13-282 (825)
37 PRK14511 maltooligosyl trehalo 99.9 1.4E-25 3.1E-30 260.6 27.2 82 197-279 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 6.6E-22 1.4E-26 201.4 23.0 375 198-617 38-466 (504)
39 smart00642 Aamy Alpha-amylase 99.9 1.2E-22 2.6E-27 197.3 10.3 92 185-277 2-97 (166)
40 cd02854 Glycogen_branching_enz 99.8 9.7E-21 2.1E-25 167.3 11.0 96 62-159 2-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 3.2E-19 6.9E-24 194.9 22.3 317 34-380 3-438 (811)
42 PRK14507 putative bifunctional 99.7 2.6E-17 5.7E-22 202.8 10.9 91 180-277 744-834 (1693)
43 cd02860 Pullulanase_N_term Pul 99.6 1E-15 2.2E-20 136.4 10.7 92 58-162 1-97 (100)
44 PF02922 CBM_48: Carbohydrate- 99.6 5.5E-16 1.2E-20 133.8 8.7 79 57-140 1-85 (85)
45 cd02855 Glycogen_branching_enz 99.5 3.9E-14 8.5E-19 127.4 10.9 92 51-148 3-100 (106)
46 cd02856 Glycogen_debranching_e 99.5 1.9E-14 4.1E-19 128.9 8.7 82 57-145 1-92 (103)
47 COG3280 TreY Maltooligosyl tre 99.5 3.9E-14 8.5E-19 158.1 6.4 80 198-278 17-96 (889)
48 cd02852 Isoamylase_N_term Isoa 99.4 5E-13 1.1E-17 123.0 8.9 82 59-147 1-98 (119)
49 cd02853 MTHase_N_term Maltooli 99.4 8E-13 1.7E-17 114.1 9.3 84 59-161 1-85 (85)
50 TIGR01531 glyc_debranch glycog 99.4 2.9E-13 6.2E-18 162.6 8.3 85 196-282 128-217 (1464)
51 PF02806 Alpha-amylase_C: Alph 99.3 5.9E-12 1.3E-16 111.0 8.1 89 565-668 1-94 (95)
52 PRK05402 glycogen branching en 99.2 1.3E-11 2.9E-16 146.7 8.7 81 53-142 16-97 (726)
53 cd02858 Esterase_N_term Estera 99.2 1.3E-10 2.8E-15 100.2 9.3 70 64-144 5-74 (85)
54 cd02861 E_set_proteins_like E 99.1 8.3E-10 1.8E-14 94.5 9.2 70 66-147 3-73 (82)
55 PF11941 DUF3459: Domain of un 98.7 6.4E-08 1.4E-12 84.1 7.6 83 545-665 1-89 (89)
56 cd02688 E_set E or "early" set 98.6 1.3E-07 2.9E-12 80.3 8.3 57 65-128 4-61 (83)
57 PF14701 hDGE_amylase: glucano 98.5 1.5E-07 3.2E-12 102.9 7.9 83 197-281 19-108 (423)
58 PF14871 GHL6: Hypothetical gl 98.3 3.9E-06 8.4E-11 78.3 10.1 122 204-344 3-132 (132)
59 PF02638 DUF187: Glycosyl hydr 98.2 5.8E-06 1.3E-10 88.8 10.8 138 200-345 19-163 (311)
60 PRK14508 4-alpha-glucanotransf 98.2 6.4E-05 1.4E-09 85.5 19.7 264 250-554 198-495 (497)
61 PLN02950 4-alpha-glucanotransf 98.1 0.00024 5.3E-09 86.0 22.6 145 66-226 154-308 (909)
62 PLN02635 disproportionating en 98.1 5.3E-05 1.1E-09 86.3 14.4 126 250-381 224-377 (538)
63 cd02859 AMPKbeta_GBD_like AMP- 98.0 2.3E-05 5.1E-10 66.5 7.8 56 66-133 3-59 (79)
64 PF02324 Glyco_hydro_70: Glyco 98.0 1.3E-05 2.9E-10 90.2 7.6 97 179-276 564-673 (809)
65 PF02446 Glyco_hydro_77: 4-alp 97.8 1.8E-05 3.9E-10 90.5 4.9 51 195-246 13-64 (496)
66 PRK14510 putative bifunctional 97.7 0.0017 3.7E-08 81.6 20.7 260 250-555 932-1220(1221)
67 KOG3625 Alpha amylase [Carbohy 97.4 0.00013 2.8E-09 84.2 4.5 87 197-285 139-232 (1521)
68 COG1649 Uncharacterized protei 97.2 0.002 4.3E-08 70.8 10.5 136 200-346 64-209 (418)
69 cd06592 GH31_glucosidase_KIAA1 97.2 0.002 4.4E-08 69.2 10.5 128 199-346 29-165 (303)
70 PF11852 DUF3372: Domain of un 97.2 0.0012 2.5E-08 63.7 7.5 53 540-592 41-116 (168)
71 PF02065 Melibiase: Melibiase; 97.1 0.0024 5.3E-08 70.6 10.7 130 205-349 62-196 (394)
72 cd06597 GH31_transferase_CtsY 97.1 0.0011 2.3E-08 72.4 6.8 142 199-346 23-187 (340)
73 cd06594 GH31_glucosidase_YihQ 97.0 0.0041 8.8E-08 67.2 10.3 137 198-346 21-166 (317)
74 smart00632 Aamy_C Aamy_C domai 96.9 0.0042 9.1E-08 52.9 7.9 42 572-614 7-49 (81)
75 PRK11052 malQ 4-alpha-glucanot 96.9 0.05 1.1E-06 64.5 19.2 93 250-348 355-455 (695)
76 cd06593 GH31_xylosidase_YicI Y 96.9 0.0046 9.9E-08 66.6 9.8 129 199-346 23-159 (308)
77 TIGR00217 malQ 4-alpha-glucano 96.8 0.017 3.8E-07 66.1 13.9 41 186-226 21-61 (513)
78 PF02324 Glyco_hydro_70: Glyco 96.6 0.011 2.4E-07 67.4 10.8 126 310-446 143-299 (809)
79 PRK14507 putative bifunctional 96.5 0.11 2.4E-06 66.7 19.4 124 250-380 386-535 (1693)
80 cd06602 GH31_MGAM_SI_GAA This 96.3 0.017 3.7E-07 63.0 9.7 134 200-346 24-165 (339)
81 PF13199 Glyco_hydro_66: Glyco 96.2 0.032 6.8E-07 64.3 11.2 130 204-348 121-270 (559)
82 COG1640 MalQ 4-alpha-glucanotr 96.2 0.29 6.2E-06 55.7 18.4 45 179-226 17-61 (520)
83 cd06591 GH31_xylosidase_XylS X 96.1 0.0095 2.1E-07 64.5 6.2 129 200-346 24-159 (319)
84 cd06599 GH31_glycosidase_Aec37 96.1 0.011 2.3E-07 64.0 6.4 127 205-346 33-168 (317)
85 cd06600 GH31_MGAM-like This fa 95.8 0.015 3.2E-07 63.0 6.0 131 199-346 23-160 (317)
86 PF01055 Glyco_hydro_31: Glyco 95.7 0.016 3.4E-07 65.7 5.9 131 200-346 43-180 (441)
87 cd06604 GH31_glucosidase_II_Ma 95.6 0.033 7.1E-07 60.9 7.9 129 199-346 23-159 (339)
88 PRK14582 pgaB outer membrane N 95.2 0.19 4E-06 59.3 12.6 132 200-348 334-470 (671)
89 PF13200 DUF4015: Putative gly 95.2 0.14 3.1E-06 54.9 10.6 127 203-347 15-148 (316)
90 PRK10426 alpha-glucosidase; Pr 94.6 0.15 3.4E-06 60.2 9.9 130 205-346 225-363 (635)
91 cd06598 GH31_transferase_CtsZ 94.1 0.081 1.8E-06 57.2 5.8 132 200-346 24-164 (317)
92 PRK10658 putative alpha-glucos 94.0 0.074 1.6E-06 63.1 5.7 88 251-346 326-418 (665)
93 cd06542 GH18_EndoS-like Endo-b 93.9 0.2 4.2E-06 52.4 8.2 65 248-345 49-113 (255)
94 PF00150 Cellulase: Cellulase 93.3 0.15 3.1E-06 53.6 6.1 60 202-273 22-85 (281)
95 cd06595 GH31_xylosidase_XylS-l 93.0 0.19 4E-06 53.8 6.2 129 199-345 24-158 (292)
96 PF14488 DUF4434: Domain of un 92.2 0.43 9.2E-06 46.5 7.1 66 205-274 24-89 (166)
97 PF07745 Glyco_hydro_53: Glyco 91.5 0.45 9.7E-06 51.5 7.0 99 204-338 27-125 (332)
98 cd06603 GH31_GANC_GANAB_alpha 91.4 0.26 5.7E-06 53.8 5.1 129 199-345 23-161 (339)
99 cd06601 GH31_lyase_GLase GLase 90.1 0.79 1.7E-05 49.8 7.4 103 205-346 28-133 (332)
100 COG1501 Alpha-glucosidases, fa 89.9 0.49 1.1E-05 57.0 5.9 89 252-348 323-417 (772)
101 PRK12568 glycogen branching en 89.8 0.79 1.7E-05 54.6 7.6 78 53-142 25-104 (730)
102 PF10438 Cyc-maltodext_C: Cycl 89.1 0.34 7.4E-06 40.9 2.8 22 571-592 7-32 (78)
103 PF08533 Glyco_hydro_42C: Beta 88.9 1.4 3E-05 34.8 6.0 28 581-614 12-39 (58)
104 PLN02763 hydrolase, hydrolyzin 88.1 1.1 2.3E-05 55.0 7.1 124 205-346 205-336 (978)
105 cd02875 GH18_chitobiase Chitob 87.9 1.1 2.3E-05 49.5 6.5 55 253-345 67-121 (358)
106 PF02449 Glyco_hydro_42: Beta- 87.4 1.7 3.6E-05 48.2 7.8 118 203-344 12-136 (374)
107 cd06562 GH20_HexA_HexB-like Be 86.7 4.6 9.9E-05 44.3 10.6 120 204-335 21-148 (348)
108 cd06589 GH31 The enzymes of gl 86.7 2.7 5.8E-05 44.2 8.5 92 198-346 22-116 (265)
109 COG3867 Arabinogalactan endo-1 86.3 2.6 5.7E-05 44.1 7.7 108 203-345 65-175 (403)
110 TIGR01531 glyc_debranch glycog 86.1 13 0.00029 47.2 14.9 216 310-580 476-711 (1464)
111 cd02857 CD_pullulan_degrading_ 85.4 4.4 9.6E-05 36.3 8.2 66 56-131 11-84 (116)
112 cd05808 CBM20_alpha_amylase Al 85.4 2.2 4.7E-05 37.1 5.9 56 67-127 3-64 (95)
113 PRK14705 glycogen branching en 85.3 2 4.3E-05 54.2 7.5 79 54-141 519-599 (1224)
114 PF01120 Alpha_L_fucos: Alpha- 84.2 3.3 7.2E-05 45.3 8.0 122 204-346 94-216 (346)
115 cd05816 CBM20_DPE2_repeat2 Dis 84.1 4.4 9.5E-05 35.7 7.3 58 67-128 2-66 (99)
116 cd06545 GH18_3CO4_chitinase Th 83.8 3.4 7.3E-05 43.1 7.6 84 249-367 45-128 (253)
117 COG1523 PulA Type II secretory 83.8 1.8 4E-05 51.3 6.0 82 66-147 68-155 (697)
118 KOG1065 Maltase glucoamylase a 83.4 6.8 0.00015 46.7 10.4 94 245-346 349-448 (805)
119 cd06568 GH20_SpHex_like A subg 83.2 7.1 0.00015 42.5 10.0 122 200-334 18-152 (329)
120 cd06565 GH20_GcnA-like Glycosy 83.0 6.2 0.00013 42.4 9.3 111 200-335 17-130 (301)
121 cd02871 GH18_chitinase_D-like 82.9 4.6 0.0001 43.5 8.4 63 248-346 58-120 (312)
122 PF00686 CBM_20: Starch bindin 82.4 3.8 8.3E-05 35.8 6.2 58 67-131 4-74 (96)
123 COG3589 Uncharacterized conser 81.9 1.8 3.8E-05 46.2 4.4 53 205-273 20-72 (360)
124 cd05814 CBM20_Prei4 Prei4, N-t 81.8 3.5 7.6E-05 37.8 6.0 56 66-126 2-66 (120)
125 smart00812 Alpha_L_fucos Alpha 80.6 14 0.0003 41.1 11.2 116 204-345 84-202 (384)
126 PLN02316 synthase/transferase 79.4 26 0.00057 43.7 13.9 30 196-225 603-632 (1036)
127 cd02742 GH20_hexosaminidase Be 78.9 6.3 0.00014 42.3 7.7 119 199-335 15-147 (303)
128 cd06564 GH20_DspB_LnbB-like Gl 77.8 13 0.00028 40.4 9.8 75 248-336 80-155 (326)
129 PF01301 Glyco_hydro_35: Glyco 76.9 3.4 7.4E-05 44.7 4.9 57 204-271 27-84 (319)
130 cd06570 GH20_chitobiase-like_1 73.5 25 0.00053 38.0 10.4 117 204-334 21-145 (311)
131 cd06563 GH20_chitobiase-like T 73.0 22 0.00049 39.0 10.2 80 248-335 84-164 (357)
132 PF02903 Alpha-amylase_N: Alph 71.9 12 0.00026 34.1 6.5 66 62-133 18-94 (120)
133 TIGR03356 BGL beta-galactosida 71.6 27 0.00058 39.5 10.6 67 196-272 50-116 (427)
134 PLN03236 4-alpha-glucanotransf 71.4 11 0.00024 45.2 7.6 91 250-346 274-370 (745)
135 cd02874 GH18_CFLE_spore_hydrol 69.4 14 0.00029 39.8 7.4 87 252-367 47-133 (313)
136 COG3280 TreY Maltooligosyl tre 69.3 2.4 5.2E-05 49.7 1.6 98 486-589 712-826 (889)
137 PF13204 DUF4038: Protein of u 69.2 10 0.00022 40.4 6.3 66 205-274 34-110 (289)
138 cd06569 GH20_Sm-chitobiase-lik 68.8 43 0.00092 38.1 11.4 86 248-333 95-191 (445)
139 PLN03059 beta-galactosidase; P 68.8 8.2 0.00018 46.6 5.8 53 205-270 63-118 (840)
140 TIGR03849 arch_ComA phosphosul 68.7 13 0.00028 38.3 6.5 45 205-269 75-119 (237)
141 cd05817 CBM20_DSP Dual-specifi 68.0 15 0.00033 32.3 6.1 57 67-128 2-64 (100)
142 PTZ00445 p36-lilke protein; Pr 67.9 11 0.00025 38.0 5.7 63 198-268 26-96 (219)
143 PF14883 GHL13: Hypothetical g 67.9 81 0.0018 33.4 12.2 121 204-342 20-142 (294)
144 PLN03236 4-alpha-glucanotransf 67.7 11 0.00023 45.3 6.5 59 194-253 77-139 (745)
145 PF03198 Glyco_hydro_72: Gluca 67.6 8.3 0.00018 41.2 5.0 50 204-276 56-105 (314)
146 cd05813 CBM20_genethonin_1 Gen 67.1 23 0.00049 30.8 7.0 56 67-128 3-64 (95)
147 PF09260 DUF1966: Domain of un 65.8 18 0.00038 31.5 5.9 68 573-668 6-82 (91)
148 COG2730 BglC Endoglucanase [Ca 65.0 11 0.00024 42.2 5.8 59 203-271 75-137 (407)
149 PF00728 Glyco_hydro_20: Glyco 64.4 8.6 0.00019 41.9 4.7 125 200-336 18-156 (351)
150 PF03423 CBM_25: Carbohydrate 63.1 24 0.00051 30.4 6.2 48 75-128 17-69 (87)
151 cd05809 CBM20_beta_amylase Bet 62.5 21 0.00045 31.4 5.9 57 67-128 5-70 (99)
152 cd06546 GH18_CTS3_chitinase GH 61.4 37 0.00079 35.5 8.5 67 246-345 55-121 (256)
153 TIGR01370 cysRS possible cyste 59.6 22 0.00048 38.4 6.5 44 304-348 128-172 (315)
154 PF13380 CoA_binding_2: CoA bi 57.6 17 0.00037 33.0 4.6 39 204-268 69-107 (116)
155 PF09154 DUF1939: Domain of un 56.9 39 0.00084 26.7 5.8 56 583-666 1-57 (57)
156 PF02679 ComA: (2R)-phospho-3- 55.8 22 0.00048 36.8 5.5 48 204-271 87-134 (244)
157 cd05467 CBM20 The family 20 ca 55.0 42 0.00091 28.8 6.6 57 67-128 2-67 (96)
158 PF07071 DUF1341: Protein of u 53.8 32 0.0007 34.3 6.0 43 204-266 138-180 (218)
159 KOG0496 Beta-galactosidase [Ca 53.8 25 0.00053 41.1 6.0 59 204-272 52-110 (649)
160 cd00598 GH18_chitinase-like Th 52.6 58 0.0013 32.3 8.1 66 248-346 47-114 (210)
161 cd06543 GH18_PF-ChiA-like PF-C 52.0 89 0.0019 33.4 9.6 95 208-346 19-114 (294)
162 PRK05628 coproporphyrinogen II 51.2 22 0.00047 39.4 5.0 65 204-278 108-173 (375)
163 PF10566 Glyco_hydro_97: Glyco 49.9 84 0.0018 33.2 8.8 100 198-347 30-130 (273)
164 PRK10076 pyruvate formate lyas 47.9 53 0.0012 33.3 6.8 62 204-268 148-211 (213)
165 PRK08207 coproporphyrinogen II 47.2 34 0.00073 39.4 5.9 63 203-275 268-331 (488)
166 PF05913 DUF871: Bacterial pro 47.0 20 0.00044 39.3 3.9 59 198-273 12-70 (357)
167 PRK15447 putative protease; Pr 46.8 53 0.0011 35.2 7.0 52 197-268 15-66 (301)
168 TIGR00539 hemN_rel putative ox 46.5 34 0.00074 37.6 5.6 65 204-278 100-165 (360)
169 PRK13210 putative L-xylulose 5 45.2 37 0.0008 35.6 5.5 51 205-268 20-70 (284)
170 PF01791 DeoC: DeoC/LacD famil 44.8 12 0.00027 38.4 1.7 55 206-273 81-135 (236)
171 PRK09856 fructoselysine 3-epim 41.1 57 0.0012 34.0 6.2 49 204-267 16-64 (275)
172 PF01212 Beta_elim_lyase: Beta 40.0 25 0.00053 37.6 3.1 24 248-271 143-166 (290)
173 PRK07094 biotin synthase; Prov 39.2 49 0.0011 35.7 5.4 63 204-276 129-191 (323)
174 PRK05904 coproporphyrinogen II 38.8 43 0.00094 36.8 4.9 65 204-278 103-168 (353)
175 PRK08208 coproporphyrinogen II 38.7 47 0.001 37.5 5.3 65 204-278 141-206 (430)
176 TIGR03581 EF_0839 conserved hy 38.5 58 0.0012 33.0 5.1 21 204-224 138-158 (236)
177 PRK01060 endonuclease IV; Prov 38.1 80 0.0017 33.1 6.7 49 204-266 15-63 (281)
178 TIGR01210 conserved hypothetic 35.1 60 0.0013 35.0 5.2 60 204-273 117-178 (313)
179 TIGR00433 bioB biotin syntheta 34.8 79 0.0017 33.4 6.1 60 204-274 123-182 (296)
180 PRK06256 biotin synthase; Vali 34.6 61 0.0013 35.2 5.2 60 204-274 152-211 (336)
181 cd02877 GH18_hevamine_XipI_cla 33.3 2.5E+02 0.0054 29.8 9.4 58 209-269 19-78 (280)
182 PF15640 Tox-MPTase4: Metallop 33.0 42 0.0009 30.8 2.9 28 244-271 16-43 (132)
183 cd06547 GH85_ENGase Endo-beta- 32.4 34 0.00074 37.4 2.8 65 254-347 50-114 (339)
184 PRK08446 coproporphyrinogen II 31.9 88 0.0019 34.3 5.9 65 204-278 98-163 (350)
185 COG0520 csdA Selenocysteine ly 31.9 42 0.00091 37.6 3.4 35 237-271 166-200 (405)
186 cd05014 SIS_Kpsf KpsF-like pro 31.7 1.2E+02 0.0027 27.3 6.1 63 205-268 17-79 (128)
187 PRK05660 HemN family oxidoredu 31.6 81 0.0017 35.0 5.6 65 204-278 107-172 (378)
188 PRK13384 delta-aminolevulinic 31.4 2.5E+02 0.0054 30.2 8.8 103 198-340 59-164 (322)
189 KOG2499 Beta-N-acetylhexosamin 31.3 2.3E+02 0.005 32.3 8.8 30 248-277 248-278 (542)
190 cd05806 CBM20_laforin Laforin 31.3 3.1E+02 0.0067 24.9 8.3 43 67-109 3-59 (112)
191 PF01261 AP_endonuc_2: Xylose 31.1 38 0.00082 33.2 2.7 45 207-268 1-45 (213)
192 cd05820 CBM20_novamyl Novamyl 30.7 2.6E+02 0.0056 24.6 7.7 57 67-128 5-72 (103)
193 PRK15452 putative protease; Pr 30.5 1.1E+02 0.0024 34.7 6.5 50 206-268 15-64 (443)
194 cd05811 CBM20_glucoamylase Glu 29.8 1.4E+02 0.0031 26.3 5.9 57 67-128 9-75 (106)
195 cd00609 AAT_like Aspartate ami 29.3 93 0.002 33.0 5.6 53 207-275 125-177 (350)
196 PF14701 hDGE_amylase: glucano 29.1 56 0.0012 36.7 3.8 40 307-348 359-404 (423)
197 PRK04302 triosephosphate isome 28.5 1E+02 0.0023 31.3 5.5 45 206-270 77-121 (223)
198 cd00287 ribokinase_pfkB_like r 28.5 1E+02 0.0022 29.8 5.3 53 206-273 42-94 (196)
199 TIGR00538 hemN oxygen-independ 28.4 88 0.0019 35.6 5.4 65 204-278 151-216 (455)
200 PF00724 Oxidored_FMN: NADH:fl 28.2 1.5E+02 0.0034 32.2 7.0 28 249-278 79-106 (341)
201 PRK13347 coproporphyrinogen II 28.0 93 0.002 35.4 5.5 65 204-278 152-217 (453)
202 TIGR00542 hxl6Piso_put hexulos 27.5 1E+02 0.0022 32.3 5.4 50 205-267 20-69 (279)
203 COG0041 PurE Phosphoribosylcar 27.5 69 0.0015 30.6 3.4 52 198-271 14-65 (162)
204 PRK09249 coproporphyrinogen II 27.1 1.1E+02 0.0023 34.9 5.7 65 204-278 151-216 (453)
205 cd05810 CBM20_alpha_MTH Glucan 26.7 1.4E+02 0.0029 26.2 5.1 47 76-127 15-65 (97)
206 PRK05939 hypothetical protein; 26.6 79 0.0017 35.3 4.5 31 242-272 140-170 (397)
207 PLN02808 alpha-galactosidase 26.5 88 0.0019 34.8 4.7 93 210-346 63-156 (386)
208 cd04824 eu_ALAD_PBGS_cysteine_ 26.4 3.9E+02 0.0085 28.8 9.1 104 198-340 49-158 (320)
209 PRK09852 cryptic 6-phospho-bet 26.4 1.5E+02 0.0033 34.0 6.7 68 195-271 66-133 (474)
210 PRK05967 cystathionine beta-ly 26.4 81 0.0017 35.3 4.5 32 242-273 158-189 (395)
211 TIGR01211 ELP3 histone acetylt 26.2 95 0.0021 36.1 5.1 60 204-273 206-265 (522)
212 cd06548 GH18_chitinase The GH1 25.9 74 0.0016 34.3 4.0 29 316-344 105-133 (322)
213 PRK09257 aromatic amino acid a 25.9 1.9E+02 0.004 32.0 7.4 46 216-276 173-218 (396)
214 PLN02389 biotin synthase 25.6 1.5E+02 0.0033 32.9 6.4 60 204-274 178-237 (379)
215 PRK09331 Sep-tRNA:Cys-tRNA syn 25.5 65 0.0014 35.6 3.6 31 243-273 168-198 (387)
216 PRK08599 coproporphyrinogen II 25.3 99 0.0022 34.1 5.0 65 204-278 100-165 (377)
217 cd05815 CBM20_DPE2_repeat1 Dis 25.1 3.3E+02 0.0071 23.7 7.3 56 67-127 2-66 (101)
218 KOG0259 Tyrosine aminotransfer 25.0 81 0.0018 34.7 3.9 30 248-277 217-246 (447)
219 PRK07379 coproporphyrinogen II 25.0 99 0.0022 34.6 4.9 65 204-278 115-180 (400)
220 PF11806 DUF3327: Domain of un 24.7 2.2E+02 0.0047 26.1 6.3 41 67-108 4-53 (122)
221 TIGR03471 HpnJ hopanoid biosyn 24.6 1.3E+02 0.0028 34.3 5.9 26 248-273 321-346 (472)
222 PRK09028 cystathionine beta-ly 24.5 92 0.002 34.8 4.5 30 244-273 157-186 (394)
223 COG0826 Collagenase and relate 24.4 1.8E+02 0.0039 31.9 6.6 50 206-268 18-67 (347)
224 PRK05799 coproporphyrinogen II 23.9 1.4E+02 0.003 33.0 5.7 65 204-278 99-164 (374)
225 cd00384 ALAD_PBGS Porphobilino 23.7 4.8E+02 0.01 28.1 9.2 103 198-340 49-154 (314)
226 PRK12928 lipoyl synthase; Prov 23.4 2.2E+02 0.0047 30.4 6.9 61 198-269 217-277 (290)
227 cd06452 SepCysS Sep-tRNA:Cys-t 23.3 64 0.0014 35.2 3.0 29 245-273 151-179 (361)
228 KOG3625 Alpha amylase [Carbohy 23.2 8.9E+02 0.019 30.2 12.0 69 307-380 494-569 (1521)
229 TIGR01233 lacG 6-phospho-beta- 23.1 4.2E+02 0.0091 30.3 9.6 102 195-336 48-149 (467)
230 PLN02905 beta-amylase 23.1 3.2E+02 0.0069 32.2 8.3 82 180-278 265-351 (702)
231 smart00636 Glyco_18 Glycosyl h 22.9 90 0.002 33.7 4.0 30 316-345 87-116 (334)
232 cd02876 GH18_SI-CLP Stabilin-1 22.8 84 0.0018 33.8 3.7 29 316-344 88-116 (318)
233 cd04823 ALAD_PBGS_aspartate_ri 22.8 4.7E+02 0.01 28.2 8.9 103 198-340 52-159 (320)
234 COG1874 LacA Beta-galactosidas 22.7 1.4E+02 0.0029 35.8 5.5 53 204-272 33-90 (673)
235 cd00615 Orn_deC_like Ornithine 22.6 59 0.0013 34.4 2.4 27 246-272 166-192 (294)
236 cd02879 GH18_plant_chitinase_c 22.6 84 0.0018 33.6 3.6 29 316-344 88-116 (299)
237 COG1533 SplB DNA repair photol 22.4 2.3E+02 0.0051 30.3 6.9 60 193-273 162-222 (297)
238 TIGR01324 cysta_beta_ly_B cyst 22.4 1.1E+02 0.0023 34.0 4.5 32 242-273 144-175 (377)
239 PF07894 DUF1669: Protein of u 22.3 70 0.0015 33.9 2.8 22 249-271 136-157 (284)
240 PRK09058 coproporphyrinogen II 22.0 1.3E+02 0.0028 34.3 5.1 65 204-278 163-228 (449)
241 COG0134 TrpC Indole-3-glycerol 21.9 97 0.0021 32.3 3.7 42 207-270 122-163 (254)
242 PLN02229 alpha-galactosidase 21.6 7.2E+02 0.016 28.1 10.6 54 208-268 92-146 (427)
243 cd02803 OYE_like_FMN_family Ol 21.5 1.9E+02 0.004 31.1 6.1 28 249-278 76-103 (327)
244 PRK07050 cystathionine beta-ly 21.5 1.1E+02 0.0024 34.0 4.5 30 245-274 162-191 (394)
245 PRK07324 transaminase; Validat 21.4 1.4E+02 0.0031 32.7 5.3 28 248-275 171-198 (373)
246 cd06454 KBL_like KBL_like; thi 21.3 79 0.0017 33.9 3.1 27 247-273 146-172 (349)
247 PRK13209 L-xylulose 5-phosphat 21.2 1.7E+02 0.0037 30.6 5.6 51 205-268 25-75 (283)
248 COG2342 Predicted extracellula 21.1 6.7E+02 0.015 26.6 9.4 118 204-348 33-151 (300)
249 cd05013 SIS_RpiR RpiR-like pro 20.9 1.3E+02 0.0027 27.2 4.0 71 197-268 22-92 (139)
250 cd00019 AP2Ec AP endonuclease 20.9 2.2E+02 0.0048 29.7 6.4 50 205-268 14-64 (279)
251 KOG1616 Protein involved in Sn 20.9 2.1E+02 0.0045 30.6 6.0 59 66-133 80-140 (289)
252 TIGR02539 SepCysS Sep-tRNA:Cys 20.8 85 0.0018 34.4 3.3 32 243-274 156-187 (370)
253 PRK09283 delta-aminolevulinic 20.6 5.4E+02 0.012 27.8 8.9 103 198-340 57-162 (323)
254 cd06549 GH18_trifunctional GH1 20.6 96 0.0021 33.1 3.6 52 315-367 83-134 (298)
255 PF00704 Glyco_hydro_18: Glyco 20.6 1E+02 0.0022 33.2 3.7 30 317-346 96-125 (343)
256 PRK06582 coproporphyrinogen II 20.6 1.5E+02 0.0032 33.1 5.2 65 204-278 111-175 (390)
257 cd01494 AAT_I Aspartate aminot 20.6 78 0.0017 29.4 2.6 26 251-276 110-135 (170)
258 cd02872 GH18_chitolectin_chito 20.3 95 0.0021 34.0 3.5 29 316-344 92-120 (362)
259 PTZ00376 aspartate aminotransf 20.2 1.4E+02 0.0029 33.3 4.8 46 216-276 177-222 (404)
260 PRK09057 coproporphyrinogen II 20.2 1.3E+02 0.0028 33.4 4.5 64 205-278 105-168 (380)
261 PRK06294 coproporphyrinogen II 20.1 1.6E+02 0.0035 32.5 5.3 65 204-278 103-168 (370)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=8.5e-140 Score=1200.21 Aligned_cols=666 Identities=70% Similarity=1.248 Sum_probs=615.9
Q ss_pred CCcccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHcccccCCcEEeCCcEEEEEEcCCCCeEEE
Q 035501 2 TRMEDETENIGILSTDQGLEPFKDHFKYRMKRYVDQKLLLEKHEGGLEEFAKGYLEFGFNREDGGIVYREWAPAAKEAQL 81 (732)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~g~~f~~wAP~A~~V~L 81 (732)
+......+++++++.||||+||+++|++|+..+.+++++|++.+|+|++|+++|+.||+|+..+||+||||||+|++|+|
T Consensus 51 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~L 130 (758)
T PLN02447 51 ASPPPPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAAL 130 (758)
T ss_pred ccCCCCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEE
Confidence 34566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeC
Q 035501 82 IGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWD 160 (732)
Q Consensus 82 ~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~ 160 (732)
+||||+|++..++|++.++|+|+++||+.+|.++++||++|+|+|+. +|.+.+++||||++++++|.+.+..+++++||
T Consensus 131 vGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~d 210 (758)
T PLN02447 131 IGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWD 210 (758)
T ss_pred EEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeC
Confidence 99999999889999998999999999997778889999999999998 78889999999999999997655567899999
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccc
Q 035501 161 PPPSERYEFKYPRPPKPKAPRIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFF 240 (732)
Q Consensus 161 ~~~~~~~~w~~~~~~~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~ 240 (732)
|+..++|.|++++++.+.+++|||+|||+++.+++.|||+++++++|||||+||||+||||||++++.+++|||++++||
T Consensus 211 p~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~f 290 (758)
T PLN02447 211 PPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFF 290 (758)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCc
Confidence 97556799999887777889999999999998888999999998899999999999999999999999899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHH
Q 035501 241 AASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEV 320 (732)
Q Consensus 241 av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v 320 (732)
+|+++|||++|||+||++||++||+||||+|+||++.+...++..||+ +...||+.+..+++..|++.+|||++++|
T Consensus 291 a~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg---~~~~Yf~~~~~g~~~~w~~~~~N~~~~eV 367 (758)
T PLN02447 291 AVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDG---TDGSYFHSGPRGYHWLWDSRLFNYGNWEV 367 (758)
T ss_pred ccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCC---CCccccccCCCCCcCcCCCceecCCCHHH
Confidence 999999999999999999999999999999999999987667788883 44578887777888899998999999999
Q ss_pred HHHHHHHHHHHHHhcCceEEeecCccccccccccccchhh-------------------hhHhh-----hcceEEEeecc
Q 035501 321 LRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFT-------------------GNYNE-----YFNATVIAEDV 376 (732)
Q Consensus 321 ~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~-------------------~~~~~-----~~~~~~iaE~~ 376 (732)
|+||+++++||++||||||||||+|++|+|.++|...+|. +.+++ .+++++|||++
T Consensus 368 r~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 368 LRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred HHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999999888766553 33332 35699999999
Q ss_pred CCCCCCCcccccCCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhh
Q 035501 377 SGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLL 456 (732)
Q Consensus 377 ~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l 456 (732)
+++|.+|+|+..||+||||+|+|+|++.|+++++...++.|+++.|+.+|.++++.+++|.|++||||+++|+++++|+|
T Consensus 448 s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l 527 (758)
T PLN02447 448 SGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWL 527 (758)
T ss_pred CCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCccc
Q 035501 457 MDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADH 536 (732)
Q Consensus 457 ~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~ 536 (732)
+|++||..|+.....++...|+++++||+++++|++||.++|+|||+|||+++|+||||+||+|++..++++|++.+.+.
T Consensus 528 ~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~ 607 (758)
T PLN02447 528 MDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADH 607 (758)
T ss_pred cchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCc
Confidence 99999999999888899999999999999999999999977999999999999999999999999999999999998877
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEeCcEEEEEECCCCCccccEEEecCCCCcEEEEecCCC
Q 035501 537 LRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDA 616 (732)
Q Consensus 537 ~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~ 616 (732)
++|+.|.+|+|+|++|++++|+|..+++|+.+.+.+++||+|.|+.+|||+||+|.+++.+|+|++|.+|+|+++||||+
T Consensus 608 l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~ilnSD~ 687 (758)
T PLN02447 608 LRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIVLDSDA 687 (758)
T ss_pred hhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEEECCCc
Confidence 78999999999999999999999999999999999999999999999999999996689999999999999999999999
Q ss_pred CcccCCCCcCCccccccCCCCCCCccccccCCCCcEEEEEeCcceEEEEEEecccccCCCCC
Q 035501 617 WGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVEESQEGHNNS 678 (732)
Q Consensus 617 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~~~~~~~~~~~ 678 (732)
.+|||+++++....+++.+ .+|++++++++|+|||++++||++..+..+....+
T Consensus 688 ~~fGG~~~~~~~~~~~~~~--------~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~~~~~ 741 (758)
T PLN02447 688 WEFGGFGRVDHDADHFTPE--------GNFDNRPHSFMVYAPSRTAVVYAPVDEDDEPADRK 741 (758)
T ss_pred hhcCCCCccCCCccEEecc--------cCcCCCCcEEEEEeCCceEEEEEECCccccccccc
Confidence 9999999987655555532 46899999999999999999999876555544443
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1e-112 Score=954.03 Aligned_cols=599 Identities=41% Similarity=0.793 Sum_probs=542.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHcccccCCcEEeCC-cEEEEEEcCCCCeEEEEeccCCCCCcccc-----
Q 035501 21 EPFKDHFKYRMKRYVDQKLLLEKHEGGLEEFAKGYLEFGFNREDG-GIVYREWAPAAKEAQLIGDFNGWDGSNHK----- 94 (732)
Q Consensus 21 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~-g~~f~~wAP~A~~V~L~gdfn~w~~~~~~----- 94 (732)
+.|...++.||+.+++.+.+|.+.+++|+.|++||+.||+|+..+ ++.|++|||+|..++|+||||+|+.+++.
T Consensus 86 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~ 165 (872)
T PLN03244 86 KIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGH 165 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCcccccccccc
Confidence 458899999999999999999999999999999999999999875 89999999999999999999999987776
Q ss_pred eeeCCCCEEEEEecCC--CC------------------------------------------------------------
Q 035501 95 MERNEFGVWSISIPDS--GG------------------------------------------------------------ 112 (732)
Q Consensus 95 m~~~~~GvW~i~ip~~--~g------------------------------------------------------------ 112 (732)
|.+++.|+|+|.|++. +|
T Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (872)
T PLN03244 166 FGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQI 245 (872)
T ss_pred ccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHHh
Confidence 6689999999999542 00
Q ss_pred --------------------------------------------------------------------------------
Q 035501 113 -------------------------------------------------------------------------------- 112 (732)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (732)
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (872)
T PLN03244 246 FGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLESR 325 (872)
T ss_pred hCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHhh
Confidence
Q ss_pred ----------CCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCCCCCCCce
Q 035501 113 ----------KPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRPPKPKAPR 181 (732)
Q Consensus 113 ----------~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 181 (732)
.++|+||++|++.+.+ +|. ++|+|+|++++++|+.. ..+++++|+|+..++|.|++++|+++..++
T Consensus 326 ~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~-~~RiPaw~~~~~~~~~~--~~~~~~~w~P~~~~~y~~k~~~p~~p~~lr 402 (872)
T PLN03244 326 KGRKAWLKKYIPAIPHGSKYRLYFNTPDGP-LERIPAWATYVLPDDDG--KQAFAIHWEPPPEAAHKWKNMKPKVPESLR 402 (872)
T ss_pred cccCceeecccCCCCCCCeEEEEEEcCCCC-cccCCCCeeeEEecCCC--CceeeeEeCCCcccCCccCCCCCCCCCCce
Confidence 3469999999999998 676 89999999999999864 378999999997778999999998899999
Q ss_pred EEEEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHH
Q 035501 182 IYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHS 261 (732)
Q Consensus 182 IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~ 261 (732)
|||+|||+++.++++|||++|+++ +++||||+++|||++|||+||++||+
T Consensus 403 IYE~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTPeDLK~LVD~aH~ 452 (872)
T PLN03244 403 IYECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTPDDFKRLVDEAHG 452 (872)
T ss_pred EEEEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999863 67999999999999999999999999
Q ss_pred CCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEe
Q 035501 262 LGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFR 341 (732)
Q Consensus 262 ~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR 341 (732)
+||+||||||+||++.+...++..||+ .+..||+.+.+++++.|++..||+++++|++||+++++||++||||||||
T Consensus 453 ~GI~VILDvV~NH~~~d~~~GL~~fDG---t~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFR 529 (872)
T PLN03244 453 LGLLVFLDIVHSYAAADEMVGLSLFDG---SNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQ 529 (872)
T ss_pred CCCEEEEEecCccCCCccccchhhcCC---CccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcce
Confidence 999999999999999987778888884 34578888777889999999999999999999999999999999999999
Q ss_pred ecCcccccccccccc------------------chhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceeccccc
Q 035501 342 FDGVTSMLYHHHGIN------------------MSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLA 398 (732)
Q Consensus 342 ~D~~~~~~~~~~g~~------------------~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~ 398 (732)
||+|++|+|.++|.. ..|++.+++ ++++++|||+++++|.+|+|+..||+||||+|+
T Consensus 530 fDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWn 609 (872)
T PLN03244 530 FHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVN 609 (872)
T ss_pred eecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceec
Confidence 999999999988751 123344332 356999999999999999999999999999999
Q ss_pred ccccHHHHHHHhcCCCCCccHHHHHHHh-hcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHH
Q 035501 399 MAIPDRWIDYLKNKKDEEWSMKEISQSL-TNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIER 477 (732)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~~l~~~l-~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~ 477 (732)
|+|++.|+++++...+..|+++.|+..| .++++.+++++|.||||++.+|++++.|+|+++++|..+. ..+.+.+
T Consensus 610 Mgwmdd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~----~~~vv~R 685 (872)
T PLN03244 610 LSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG----GKELLDR 685 (872)
T ss_pred CcchHHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc----cchhhhh
Confidence 9999999999999988889999999998 6677888999999999999999999999999999998773 4556778
Q ss_pred HHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCC
Q 035501 478 GITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFP 557 (732)
Q Consensus 478 ~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~ 557 (732)
+++++||++++++++||.|+|+|||+|||+++|+|+|++||++++..++++|++++.+. |+.|.+|+|+|++|+++++
T Consensus 686 g~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~--hk~L~~FdrdLn~Ly~~~~ 763 (872)
T PLN03244 686 GCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEV--HHHLFSFDKDLMDLDENEG 763 (872)
T ss_pred hhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccCChh--HHHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999998654 7899999999999999999
Q ss_pred CCcCCceEEEeccCCCcEEEEEeCcEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCC
Q 035501 558 FLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEG 637 (732)
Q Consensus 558 aL~~g~~~~~~~~~~~~vlaf~R~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~ 637 (732)
+|..|+.|+.+.+.+++||||.|+.+|||+||+|.+++.+|+|++|.+|+|+++||||+.+|||+++++... +++..
T Consensus 764 aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~-~~t~~-- 840 (872)
T PLN03244 764 ILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDH-YLQRS-- 840 (872)
T ss_pred ccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCc-eeecc--
Confidence 999999999999999999999999999999999976899999999999999999999999999999887554 33321
Q ss_pred CCCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 638 IPGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 638 ~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
...++++++++++|+|||+|++||++.
T Consensus 841 ----~~~~~~gr~~sl~l~LPprsavVlk~~ 867 (872)
T PLN03244 841 ----INKRIDGLRNCLEVFLPSRTAQVYKLS 867 (872)
T ss_pred ----cccccCCCCceEEEEeCCCEEEEEEEe
Confidence 224689999999999999999999874
No 3
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.6e-111 Score=963.76 Aligned_cols=628 Identities=42% Similarity=0.799 Sum_probs=548.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHcccccCCcEEeC-CcEEEEEEcCCCCeEEEEeccCCCCCccccee---
Q 035501 21 EPFKDHFKYRMKRYVDQKLLLEKHEGGLEEFAKGYLEFGFNRED-GGIVYREWAPAAKEAQLIGDFNGWDGSNHKME--- 96 (732)
Q Consensus 21 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~-~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~--- 96 (732)
+.|.+++++||+.+++.+.+|.+.+++|+.|+++|+.||+|+.. .|+.|++|||+|+.|+|+||||+|+.+++.|.
T Consensus 83 ~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~ 162 (897)
T PLN02960 83 RAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAREGY 162 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhhccc
Confidence 45899999999999999999999999999999999999999976 49999999999999999999999999999876
Q ss_pred --eCCCCEEEEEecCC--CC------------------------------------------------------------
Q 035501 97 --RNEFGVWSISIPDS--GG------------------------------------------------------------ 112 (732)
Q Consensus 97 --~~~~GvW~i~ip~~--~g------------------------------------------------------------ 112 (732)
+++.|+|+|.|++. +|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (897)
T PLN02960 163 FGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQM 242 (897)
T ss_pred ccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHHh
Confidence 78899999999542 01
Q ss_pred --------------------------------------------------------------------------------
Q 035501 113 -------------------------------------------------------------------------------- 112 (732)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (732)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 322 (897)
T PLN02960 243 FGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRKG 322 (897)
T ss_pred hCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeeec
Confidence
Q ss_pred --------CCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCCCCCCCceEE
Q 035501 113 --------KPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRPPKPKAPRIY 183 (732)
Q Consensus 113 --------~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~IY 183 (732)
.+++.||++|+|+|.+ +| ..+++||||+++.+++... ...+++|+++....|.|++.+|+.+.+++||
T Consensus 323 ~~gw~~~~ip~~~hG~~Yky~v~~~~g-~~~~vdpyA~~~qp~~~~~--~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIY 399 (897)
T PLN02960 323 RKAWLKKYIPAIPHGSKYRVYFNTPDG-PLERVPAWATYVLPDPDGK--QWYAIHWEPPPEEAYKWKFERPKVPKSLRIY 399 (897)
T ss_pred CCcEEEEEccCCCCCCEEEEEEEeCCC-ceEECCCcceeEeecCCCc--cceEEEeCCCCCCCCCCCCCCCCCCCCcEEE
Confidence 1347999999999987 44 4678999999998777532 1246788876446799998877777899999
Q ss_pred EEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCC
Q 035501 184 EAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLG 263 (732)
Q Consensus 184 E~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~G 263 (732)
|+|||+|+.++++|||++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++|
T Consensus 400 ElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~G 479 (897)
T PLN02960 400 ECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLG 479 (897)
T ss_pred EEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCC
Confidence 99999999888899999999878999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeec
Q 035501 264 LRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343 (732)
Q Consensus 264 I~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D 343 (732)
|+||||+|+||++.++..++..||+ .+..||+.+..++++.|+++.|||++++||+||+++++||++||||||||||
T Consensus 480 I~VILDvV~NH~~~d~~~~L~~FDG---~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~D 556 (897)
T PLN02960 480 LLVFLDIVHSYAAADEMVGLSLFDG---SNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFH 556 (897)
T ss_pred CEEEEEecccccCCccccchhhcCC---CccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeec
Confidence 9999999999999986667788884 3456888777788899999999999999999999999999999999999999
Q ss_pred Cccccccccccc------------------cchhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceeccccccc
Q 035501 344 GVTSMLYHHHGI------------------NMSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMA 400 (732)
Q Consensus 344 ~~~~~~~~~~g~------------------~~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~ 400 (732)
++++|+|.++|. ...|++.+++ .+++++|||+.+++|.++.|...||+||||+|+|+
T Consensus 557 AV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG 636 (897)
T PLN02960 557 SLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLS 636 (897)
T ss_pred ccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCC
Confidence 999999977652 1235555544 36699999999999999999999999999999999
Q ss_pred ccHHHHHHHhcCCCCCccHHHHHHHhh-cCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHH
Q 035501 401 IPDRWIDYLKNKKDEEWSMKEISQSLT-NRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGI 479 (732)
Q Consensus 401 ~~~~~~~~l~~~~~~~~~~~~l~~~l~-~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~ 479 (732)
+++.++++++......+++..+..++. ++..++++|+|++||||+.+|+++++..|.+..++..++. .+...+++
T Consensus 637 ~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~----~~~~lRa~ 712 (897)
T PLN02960 637 PSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAV----KELLLRGV 712 (897)
T ss_pred cHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhccc----Chhhhhhh
Confidence 999999999998888889988888888 6678899999999999999999999988888766654332 23345567
Q ss_pred HHHHHHHHHHHHc-CCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCC
Q 035501 480 TLHKMIHFITMAL-GGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPF 558 (732)
Q Consensus 480 ~~~kla~~ll~t~-pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~a 558 (732)
+++++++++++++ ||+| |+|||+|||+++|.++|++++++++..++++|++.+.+. ++.+++|+|+|++||+++|+
T Consensus 713 al~~~~rllt~~~~Pg~p-LlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~--h~~l~~f~rdL~~Lr~~~pa 789 (897)
T PLN02960 713 SLHKMIRLITFTLGGSAY-LNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGV--HAHLFSFDKALMALDEKYLI 789 (897)
T ss_pred hHHHHHHHHHHHhCCCCC-EeeCccccCChhhhhCcCCCCccccccccCCcccccChh--HHHHHHHHHHHHHHHhcChh
Confidence 7788776655444 5777 999999999999999999999999999999999988654 67899999999999999999
Q ss_pred CcCCceEEEeccCCCcEEEEEeCcEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCC
Q 035501 559 LASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGI 638 (732)
Q Consensus 559 L~~g~~~~~~~~~~~~vlaf~R~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~ 638 (732)
|..++.|+...+.+++||+|.|+.++||+||++..++..|+|++|.+|.|++|||||+.+|||+++.+.......
T Consensus 790 L~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~----- 864 (897)
T PLN02960 790 LSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQR----- 864 (897)
T ss_pred hcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCcceee-----
Confidence 999999998888888999999999999999998656889999999999999999999999999998754322211
Q ss_pred CCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 639 PGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 639 ~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
+...+++++++++.|+|||++++||++.
T Consensus 865 --t~~~~~~g~~~si~i~LPp~sa~v~k~~ 892 (897)
T PLN02960 865 --TKSKRIDGLRNCLELTLPSRSAQVYKLA 892 (897)
T ss_pred --ccccccCCCCceEEEEeCCCEEEEEEEe
Confidence 1234689999999999999999999863
No 4
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-105 Score=882.30 Aligned_cols=646 Identities=50% Similarity=0.885 Sum_probs=585.7
Q ss_pred cccccCCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHcccccCCcEEeCCc-EEEEEEcCCCCeEEEEeccCCCCC
Q 035501 12 GILSTDQGLEPFKDHFKYRMKRYVDQKLLLEKHEGGLEEFAKGYLEFGFNREDGG-IVYREWAPAAKEAQLIGDFNGWDG 90 (732)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~g-~~f~~wAP~A~~V~L~gdfn~w~~ 90 (732)
++++.||+|.|+..++++|++.+.+.+..|.+.+++|+.|+.+|++||+|+..++ +.|++|||.|++|+++||||+|+.
T Consensus 59 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~ 138 (757)
T KOG0470|consen 59 KFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP 138 (757)
T ss_pred cccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccccccCCCCC
Confidence 6889999999999999999999999999999999999999999999999998777 999999999999999999999998
Q ss_pred ccccee-eCCCCEEEEEecC-CCCCCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCC
Q 035501 91 SNHKME-RNEFGVWSISIPD-SGGKPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERY 167 (732)
Q Consensus 91 ~~~~m~-~~~~GvW~i~ip~-~~g~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
....|. +++.|+|++.+|. .++...++|++.+++.+.+ .|+++.++||||+++.+++. ...+.+++|+|+.+..|
T Consensus 139 ~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~--~~q~~~~~~~~~~e~~w 216 (757)
T KOG0470|consen 139 SSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGE--GPQYYGIYWDPSPEFDW 216 (757)
T ss_pred cccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCc--ccceeeccCCCCCcccc
Confidence 887877 7889999999996 4577789999999999988 89999999999999988774 45678899999866667
Q ss_pred CCCCCCCCCCC-CceEEEEecCCCCCC-CCCCC---hHhHHHhhhhHHHHCCCCEEEECCcccc-cccCCCCcccCcccc
Q 035501 168 EFKYPRPPKPK-APRIYEAHVGMSSSE-PRVNS---YREFADDVLPRIRANNYNTVQLMAVMEH-SYYASFGYHVTNFFA 241 (732)
Q Consensus 168 ~w~~~~~~~~~-~~~IYE~hv~~~~~~-~~~g~---~~~~~~~~LdyLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~y~a 241 (732)
+|++++|+.|+ +++|||+|||.||.+ +++-+ |++|+++.||+||+||+||||||||+|| .++.+|||+|++||+
T Consensus 217 ~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFa 296 (757)
T KOG0470|consen 217 GFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFA 296 (757)
T ss_pred cccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeec
Confidence 77777777666 999999999888654 34434 9999976699999999999999999999 588899999999999
Q ss_pred CCCCCCCHH------HHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 035501 242 ASSRSGTPE------DLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNY 315 (732)
Q Consensus 242 v~~~~Gt~~------dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~ 315 (732)
|.+||||++ |||.||++||..||.||||||+||++++...+++.||+. .+..||+.+.++++..|+++.|||
T Consensus 297 pssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGi--d~~~Yf~~~~r~~h~~~~~r~fn~ 374 (757)
T KOG0470|consen 297 PSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGI--DNSVYFHSGPRGYHNSWCSRLFNY 374 (757)
T ss_pred ccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCc--CCceEEEeCCcccccccccccccC
Confidence 999999999 999999999999999999999999999877888889853 347899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhhc---------------------------c
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF---------------------------N 368 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~---------------------------~ 368 (732)
++|+|+++|+++|+||+.||||||||||.+++|+|.++|....|...+..++ .
T Consensus 375 ~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~ 454 (757)
T KOG0470|consen 375 NHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPG 454 (757)
T ss_pred CCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCc
Confidence 9999999999999999999999999999999999988877665554443322 2
Q ss_pred eEEEeeccCCCCCC-CcccccCCceec--ccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccc
Q 035501 369 ATVIAEDVSGMPGL-GSPVSMGGIGFD--YRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQA 445 (732)
Q Consensus 369 ~~~iaE~~~~~~~~-~~~~~~~g~gFd--~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~ 445 (732)
.|.+||+.+++|.+ |.|..+++.||| |+.++...+.|++.|++..+..|.++.+...++++++++++++|+++||+.
T Consensus 455 ~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~ 534 (757)
T KOG0470|consen 455 LITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQA 534 (757)
T ss_pred ceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCc
Confidence 88999999999999 999999999999 999999999999999998888999999888999999999999999999999
Q ss_pred cccc-hhhHh-hhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccc
Q 035501 446 IVGD-KTIAF-LLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYE 523 (732)
Q Consensus 446 r~g~-~~~~f-~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~ 523 (732)
.+|+ ++++| +++|+.+|..|+...+..+.++|++.+++|.++|++++.|..+|+|||+|||+|+|+|+|+.|++++++
T Consensus 535 ~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~ 614 (757)
T KOG0470|consen 535 LVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYN 614 (757)
T ss_pred cccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCcccc
Confidence 9999 99999 999999999999988889999999999999999877765444599999999999999999999999999
Q ss_pred cccC-CCccCCcccccc-hHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEeCcEEEEEECCCCCccccEEEe
Q 035501 524 KCRR-QWNLVDADHLRY-KFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVG 601 (732)
Q Consensus 524 ~~~~-~W~~~~~~~~~~-~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R~~~lvv~N~s~~~~~~~~~i~ 601 (732)
.+++ +|++.+.+.+++ +.+.+|.+.|..|..++-.+..+.+++...++.+.+++|+|+..++|||++++.++.+|.++
T Consensus 615 ~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg 694 (757)
T KOG0470|consen 615 YARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHDSNSYIDYRVG 694 (757)
T ss_pred ccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEEEEecCCCCCceeEEE
Confidence 9888 999999888887 78999999999999999999999999999999999999999999999999999888999999
Q ss_pred cCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccccccCCCCcEEEEEeCcceEEEEEEec
Q 035501 602 CDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 669 (732)
Q Consensus 602 ~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~~ 669 (732)
+..+|.|+.+|++|...+||+.++......++. ...+++++.++.|++|.++++||....
T Consensus 695 ~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~--------d~~~~g~~~~l~VY~~~~~a~vl~~~~ 754 (757)
T KOG0470|consen 695 FNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPY--------DFRSEGRPVSLQVYIPSRTATVLALLD 754 (757)
T ss_pred ecCCCceEEEECCCCCCCCCccccccccccCcc--------ccccCCeeeeEEEEeccCcceEeeecc
Confidence 999999999999999999999998776554432 245788999999999999999998754
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.8e-100 Score=874.92 Aligned_cols=562 Identities=25% Similarity=0.493 Sum_probs=475.8
Q ss_pred HHHHHcc-----cccCCcEEe----CCcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCC
Q 035501 48 LEEFAKG-----YLEFGFNRE----DGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPH 118 (732)
Q Consensus 48 ~~~~~~~-----~~~lG~~~~----~~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~ 118 (732)
+..|..| |+.||||.. .+||+|+||||+|++|+|+||||+|++..++|++.++|+|+++||+. .+
T Consensus 112 ~~~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~------~~ 185 (730)
T PRK12568 112 LLQIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRV------EA 185 (730)
T ss_pred HHHHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCC------CC
Confidence 4455544 889999984 45899999999999999999999999999999988899999999985 78
Q ss_pred CceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCC-----CCC--CCCCceEEEEecCCC
Q 035501 119 GSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYP-----RPP--KPKAPRIYEAHVGMS 190 (732)
Q Consensus 119 g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~~~--~~~~~~IYE~hv~~~ 190 (732)
|..|+|+|.. +|.+..++||||+++..+|.+ .+++.++ ..|+|++. +.+ ..++++|||+|||+|
T Consensus 186 G~~YKYeI~~~~G~~~~k~DPYA~~~e~~p~~-----asvV~~~---~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf 257 (730)
T PRK12568 186 GARYKYAITAADGRVLLKADPVARQTELPPAT-----ASVVPSA---AAFAWTDAAWMARRDPAAVPAPLSIYEVHAASW 257 (730)
T ss_pred CCEEEEEEEcCCCeEeecCCCcceEeecCCCC-----CeEEcCC---CCCCCCChhhhhcccccCCCCCcEEEEEEhHHh
Confidence 9999999998 888888999999999888853 4677664 35788764 222 457899999999999
Q ss_pred CCCC--CCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 191 SSEP--RVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 191 ~~~~--~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
+.+. ..++|++++++.|||||+||||+||||||++++..++|||++.+||+|+|+|||++|||+||++||++||+|||
T Consensus 258 ~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 258 RRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 8643 46799999987789999999999999999999988899999999999999999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccc
Q 035501 269 DIVHSHASNNVTDGLNGFDVGQSSQESYFHTG-DRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTS 347 (732)
Q Consensus 269 DvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~-~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~ 347 (732)
|+|+||++.+. .++..||+. ..|.+.+ ..+.+..|++..|||++|+||+||+++++||+++|||||||+|++++
T Consensus 338 D~V~nH~~~d~-~~l~~fdg~----~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~ 412 (730)
T PRK12568 338 DWVSAHFPDDA-HGLAQFDGA----ALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVAS 412 (730)
T ss_pred EeccccCCccc-cccccCCCc----cccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhH
Confidence 99999999874 466777742 2343332 34667899888899999999999999999999999999999999999
Q ss_pred cccccccc-----------------cchhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceecccccccccHHH
Q 035501 348 MLYHHHGI-----------------NMSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRW 405 (732)
Q Consensus 348 ~~~~~~g~-----------------~~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~ 405 (732)
|+|.+++. ..+|++++++ .+++++|||+++.+|.++.|...+|+|||++|+|+|++.+
T Consensus 413 mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~ 492 (730)
T PRK12568 413 MLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDT 492 (730)
T ss_pred hhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHH
Confidence 98765422 1358887764 4569999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CCCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHH
Q 035501 406 IDYLKNKK-DEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKM 484 (732)
Q Consensus 406 ~~~l~~~~-~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kl 484 (732)
++|++..+ .+.+....+...|.+ .+.++.| +..|||++..|++++. ++ |. + ...+..+.+|+
T Consensus 493 l~y~~~dp~~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~----~k-----mp-----G-d~~~k~a~lR~ 555 (730)
T PRK12568 493 LHYMQRDPAERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLL----GQ-----MP-----G-DDWRRFANLRA 555 (730)
T ss_pred HHHHhhCchhhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhh----hc-----CC-----C-CHHHHHHHHHH
Confidence 99999865 345667788888875 7788887 8999999999987752 22 11 1 22345677899
Q ss_pred HHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCc----
Q 035501 485 IHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLA---- 560 (732)
Q Consensus 485 a~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~---- 560 (732)
+.++|||+||.| |+|||+|||+. ..|++.. .++|.+.+.+. ++.+.+|+|+|++||+++|+|.
T Consensus 556 ~~~~~~~~PGkk-LlFmG~Efgq~---------~ew~~~~-~ldW~ll~~~~--h~~~~~~~~dLn~ly~~~paL~~~d~ 622 (730)
T PRK12568 556 YLALMWAHPGDK-LLFMGAEFGQW---------ADWNHDQ-SLDWHLLDGAR--HRGMQQLVGDLNAALRRTPALYRGTH 622 (730)
T ss_pred HHHHHHhCCCcc-eeeCchhhCCc---------ccccCCC-CccccccCChh--HHHHHHHHHHHHHHHHhChhhhcccC
Confidence 999999999999 99999999984 4566554 49999988553 5789999999999999999994
Q ss_pred --CCceEEEeccCCCcEEEEEeC------c-EEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCcccc
Q 035501 561 --STKQIVSSTNEEDKVIVFERG------D-LVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDH 631 (732)
Q Consensus 561 --~g~~~~~~~~~~~~vlaf~R~------~-~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~ 631 (732)
.|++|+.+.+.+++|++|.|. + ++||+||++. .+.+|+|++|.+|.|+++||||+..|||++..+....
T Consensus 623 ~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~-~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~~n~~~~- 700 (730)
T PRK12568 623 RADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQ-PHHDYRVGVPRAGGWREILNTDSAHYGGSNLGNSGRL- 700 (730)
T ss_pred CCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCC-CccCeEECCCCCCeEEEEEcCchhhhCCCCcCCCCce-
Confidence 468999999989999999993 2 9999999998 6889999999999999999999999999987654321
Q ss_pred ccCCCCCCCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 632 FTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
. +...++++++++++|+|||++++||++.
T Consensus 701 ~--------~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 701 A--------TEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred e--------ecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 1 2345699999999999999999999864
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.1e-100 Score=873.42 Aligned_cols=567 Identities=29% Similarity=0.530 Sum_probs=465.9
Q ss_pred cccccCCcEEeCC----cEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 53 KGYLEFGFNREDG----GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 53 ~~~~~lG~~~~~~----g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
..|+.||+|.... ||+||||||+|++|+|+|+||+|++.+++|++.+.|+|+++||+. .+|+.|+|+|+.
T Consensus 22 ~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~------~~g~~Yky~I~~ 95 (639)
T PRK14706 22 RPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGA------RPGQRYKFRVTG 95 (639)
T ss_pred chhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCC------CCCCEEEEEEEC
Confidence 4588999998643 799999999999999999999999888999988899999999975 689999999998
Q ss_pred -CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCC-----C-CCCCceEEEEecCCCCCC--CCCCCh
Q 035501 129 -DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRP-----P-KPKAPRIYEAHVGMSSSE--PRVNSY 199 (732)
Q Consensus 129 -~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~-~~~~~~IYE~hv~~~~~~--~~~g~~ 199 (732)
+|.+++++||||+++..+|.. .++|+++ .|.|++..+ + ..++++|||+|||+|+.. +..++|
T Consensus 96 ~~g~~~~~~DPYa~~~~~~~~~-----~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty 166 (639)
T PRK14706 96 AAGQTVDKMDPYGSFFEVRPNT-----ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNY 166 (639)
T ss_pred CCCCEEeccCcceEEEecCCCC-----ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCH
Confidence 778889999999999888853 5677765 488987542 1 235699999999999753 346899
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCC
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNV 279 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~ 279 (732)
++++++.++|||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 167 ~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 167 RELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE 246 (639)
T ss_pred HHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch
Confidence 99997555999999999999999999998899999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccc----
Q 035501 280 TDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGI---- 355 (732)
Q Consensus 280 ~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~---- 355 (732)
.++..||+. ...+|..+..+++..|++..||+++|+||+||+++++||++||||||||||++++|+|.+++.
T Consensus 247 -~~l~~~dg~---~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 247 -SGLAHFDGG---PLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred -hhhhccCCC---cceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccc
Confidence 566677742 222233344577889998889999999999999999999999999999999999998876543
Q ss_pred -----------cchhhhhHhhh-----cceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCCC-Ccc
Q 035501 356 -----------NMSFTGNYNEY-----FNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDE-EWS 418 (732)
Q Consensus 356 -----------~~~f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~-~~~ 418 (732)
...|++.+++. +++++|||+++++|.++.|... |+||||+|+|+|++.++++++..... ...
T Consensus 323 ~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~ 401 (639)
T PRK14706 323 PNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYH 401 (639)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccCchhhhhc
Confidence 24688877653 5699999999999999999865 89999999999999999988755422 122
Q ss_pred HHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeE
Q 035501 419 MKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYL 498 (732)
Q Consensus 419 ~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~l 498 (732)
...+...+. ..+.++.| |++|||+++++++++...+.. ......+..|++.+++||+||+| |
T Consensus 402 ~~~lt~~~~-y~~~e~~i-l~~SHDev~~~k~sl~~k~~g---------------~~~~~~a~~r~~~~~~~t~PG~p-L 463 (639)
T PRK14706 402 HHKLTFFNV-YRTSENYV-LAISHDEVVHLKKSMVMKMPG---------------DWYTQRAQYRAFLAMMWTTPGKK-L 463 (639)
T ss_pred hhccchhhh-hhccccEe-cCCCCccccCCccchHhHcCC---------------CHHHHHHHHHHHHHHHHhCCCCc-E
Confidence 222333232 24566766 899999999988765422100 11224567888899999999999 8
Q ss_pred eecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcC------CceEEEeccCC
Q 035501 499 NFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLAS------TKQIVSSTNEE 572 (732)
Q Consensus 499 iy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~------g~~~~~~~~~~ 572 (732)
||||+|||+ ++.|+. +++++|.+.+.+. ++.|.+|+|+|++||+++|+|+. |++|+...+.+
T Consensus 464 iFmG~EfG~---------~~ew~~-~~~l~W~l~~~~~--~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~ 531 (639)
T PRK14706 464 LFMGQEFAQ---------GTEWNH-DASLPWYLTDVPD--HRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTD 531 (639)
T ss_pred EEeccccCC---------CCCCCc-ccCCCCcccCCHH--HHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCC
Confidence 899999997 455664 4569999887443 35799999999999999999954 47788888888
Q ss_pred CcEEEEEeCc------EEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCcccccc
Q 035501 573 DKVIVFERGD------LVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNF 646 (732)
Q Consensus 573 ~~vlaf~R~~------~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (732)
++|+||.|.. ++||+||++. ++.+|+|++|.+|+|++|||||+.+|||++..+.. +. +...+|
T Consensus 532 ~~VlaF~R~~~~~~~~vlvV~Nfs~~-~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~~--~~--------~~~~~~ 600 (639)
T PRK14706 532 NSVYAYVRRDSESGAWSLAVANLTPV-YREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQPD--LM--------ASQEGW 600 (639)
T ss_pred CCEEEEEEecCCCCeeEEEEEeCCCC-CcCCeEECCCCCCeEEEEEcCCccccCCCCCCCCc--ee--------cccccc
Confidence 8899999942 9999999997 78899999999999999999999999999987642 22 234568
Q ss_pred CCCCcEEEEEeCcceEEEEEEecccccCCCCCCC
Q 035501 647 NNRPNSFRVLSPPRTSVVYYRVEESQEGHNNSEP 680 (732)
Q Consensus 647 ~~~~~~~~v~lP~~s~~Vl~~~~~~~~~~~~~~~ 680 (732)
++++++++|+|||++++||++.+...--+.++.+
T Consensus 601 ~g~~~si~i~lp~~~~~~~~~~~~~~~~~~~~~~ 634 (639)
T PRK14706 601 HGQPHSLSLNLPPSSVLILEFVGDVPTLTYRQPE 634 (639)
T ss_pred CCCccEEEEEeCCcEEEEEEECCCCCcccccCCc
Confidence 9999999999999999999987655544554443
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.7e-98 Score=892.64 Aligned_cols=559 Identities=29% Similarity=0.518 Sum_probs=473.5
Q ss_pred CHHHHHcc-----cccCCcEEe--------CCcEEEEEEcCCCCeEEEEeccCCCCCcccceee-CCCCEEEEEecCCCC
Q 035501 47 GLEEFAKG-----YLEFGFNRE--------DGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMER-NEFGVWSISIPDSGG 112 (732)
Q Consensus 47 ~~~~~~~~-----~~~lG~~~~--------~~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~-~~~GvW~i~ip~~~g 112 (732)
++..|..| |+.||+|.. .+||+|+||||+|++|+|+||||+|++..++|.+ ...|+|+++||+.
T Consensus 607 d~~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~-- 684 (1224)
T PRK14705 607 DLHLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGV-- 684 (1224)
T ss_pred HHHHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCC--
Confidence 45566655 889999983 2389999999999999999999999998999987 4579999999985
Q ss_pred CCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCC-----CC---CCCCCceEE
Q 035501 113 KPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYP-----RP---PKPKAPRIY 183 (732)
Q Consensus 113 ~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~~---~~~~~~~IY 183 (732)
..|..|+|+|.. +|.+..+.||||++...+|.+ .++|+++ .|.|++. +. +..++++||
T Consensus 685 ----~~G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~-----aS~V~d~----~~~w~d~~W~~~r~~~~~~~~p~~IY 751 (1224)
T PRK14705 685 ----VAGACYKFEILTKAGQWVEKADPLAFGTEVPPLT-----ASRVVEA----SYAFKDAEWMSARAERDPHNSPMSVY 751 (1224)
T ss_pred ----CCCCEEEEEEEcCCCcEEecCCccccccccCCCC-----CeEEeCC----CCCcCChhhhhccccCCCCcCCcEEE
Confidence 689999999998 788889999999999888753 5788886 2788764 22 124689999
Q ss_pred EEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCC
Q 035501 184 EAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLG 263 (732)
Q Consensus 184 E~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~G 263 (732)
|+|||+|+.. ++|++++++.|||||+|||||||||||+|++..++|||++++||+|+++|||++|||+||++||++|
T Consensus 752 EvHvgsf~~~---~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~G 828 (1224)
T PRK14705 752 EVHLGSWRLG---LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAG 828 (1224)
T ss_pred EEEecccccC---CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCC
Confidence 9999999873 7899999777899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEee
Q 035501 264 LRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTG-DRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRF 342 (732)
Q Consensus 264 I~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~-~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~ 342 (732)
|+||||+|+||++.+. +++..||+. ..|++.+ ..+.++.|++..|||++++||+||+++++||++|||||||||
T Consensus 829 I~VILD~V~nH~~~d~-~~l~~fdg~----~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~ 903 (1224)
T PRK14705 829 IGVLLDWVPAHFPKDS-WALAQFDGQ----PLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRV 903 (1224)
T ss_pred CEEEEEeccccCCcch-hhhhhcCCC----cccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 9999999999998874 677788743 2345443 346789999999999999999999999999999999999999
Q ss_pred cCccccccccccc-----------------cchhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceeccccccc
Q 035501 343 DGVTSMLYHHHGI-----------------NMSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMA 400 (732)
Q Consensus 343 D~~~~~~~~~~g~-----------------~~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~ 400 (732)
|+|++|+|.+++. ...|++++++ .+++++|||+++.+|.+++|...||+||||+|+|+
T Consensus 904 Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmg 983 (1224)
T PRK14705 904 DAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMG 983 (1224)
T ss_pred eehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecch
Confidence 9999998765431 2468887765 46799999999999999999999999999999999
Q ss_pred ccHHHHHHHhcCCC-CCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHH
Q 035501 401 IPDRWIDYLKNKKD-EEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGI 479 (732)
Q Consensus 401 ~~~~~~~~l~~~~~-~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~ 479 (732)
|++.+++|++.... ..+.+..+...+.+ .+.++++ +..|||++++|++++.- .+.. ...+..
T Consensus 984 wmhd~l~Y~~~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl~~-km~G--------------d~~~k~ 1046 (1224)
T PRK14705 984 WMHDSLKYASEDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSMLR-KMPG--------------DRWQQL 1046 (1224)
T ss_pred hhHHHHHHhhhCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhHHH-hCCC--------------cHHHHH
Confidence 99999999987653 45677788888885 5777777 78899999988776421 1111 122345
Q ss_pred HHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCC
Q 035501 480 TLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFL 559 (732)
Q Consensus 480 ~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL 559 (732)
+.+|++.+++|++||+| |||||+|||++ +.|+.+ ..++|.+.+.+. ++.+..|+|+|++||+++|+|
T Consensus 1047 a~lR~~~a~~~~~PGk~-LlFMG~Efgq~---------~ew~~~-~~LdW~ll~~~~--h~~~~~~~rdLn~ly~~~paL 1113 (1224)
T PRK14705 1047 ANLRAFLAYQWAHPGKQ-LIFMGTEFGQE---------AEWSEQ-HGLDWFLADIPA--HRGIQLLTKDLNELYTSTPAL 1113 (1224)
T ss_pred HHHHHHHHHHHhcCCcC-EEECccccCCC---------CCcccc-ccCCCcccCChh--hHHHHHHHHHHHHHHhcChhh
Confidence 67788999999999999 99999999995 345554 359999988543 568999999999999999999
Q ss_pred cC------CceEEEeccCCCcEEEEEeC-----cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCc
Q 035501 560 AS------TKQIVSSTNEEDKVIVFERG-----DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHN 628 (732)
Q Consensus 560 ~~------g~~~~~~~~~~~~vlaf~R~-----~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~ 628 (732)
.. |++|+.+.+.+++|++|.|. .++||+||++. ++.+|+|++|.+|.|+++||||+..|||++..+..
T Consensus 1114 ~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~-~~~~y~igvp~~G~y~eilnsd~~~ygGsg~~n~~ 1192 (1224)
T PRK14705 1114 YQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGG-PHKGYTLGVPAAGAWTEVLNTDHETYGGSGVLNPG 1192 (1224)
T ss_pred hccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCC-CccCceECCCCCCeEEEEEeCchhhcCCCCcCCCC
Confidence 63 58899888888999999993 39999999998 78899999999999999999999999999876543
Q ss_pred cccccCCCCCCCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 629 IDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
... +...+|++++++++|+|||++++||++.
T Consensus 1193 ~~~---------~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1193 SLK---------ATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred cee---------ecccccCCCCceEEEEecCCEEEEEEEC
Confidence 211 2345799999999999999999999863
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.5e-93 Score=832.23 Aligned_cols=559 Identities=30% Similarity=0.553 Sum_probs=452.8
Q ss_pred cccccCCcEEeCC----cEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 53 KGYLEFGFNREDG----GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 53 ~~~~~lG~~~~~~----g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
..|+.||+|...+ ||+||||||+|++|+|+|+||+|....++|++..+|+|++++|+. .+|..|+|++..
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~------~~g~~Y~y~v~~ 95 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGA------KEGQLYKYHISR 95 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCC------CCCCEEEEEEEC
Confidence 3488999999776 899999999999999999999999888999988899999999974 689999999976
Q ss_pred -CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCC-----C---CCCCceEEEEecCCCCCC--CCCC
Q 035501 129 -DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRP-----P---KPKAPRIYEAHVGMSSSE--PRVN 197 (732)
Q Consensus 129 -~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~---~~~~~~IYE~hv~~~~~~--~~~g 197 (732)
+|.+.++.||||+.+...+.. .++|++++ .|.|++... + ..++++|||+|||+|+.+ ++.|
T Consensus 96 ~~g~~~~~~DPya~~~~~~~~~-----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g 167 (633)
T PRK12313 96 QDGYQVEKIDPFAFYFEARPGT-----ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPL 167 (633)
T ss_pred CCCeEEecCCCceEEEecCCCC-----ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCcc
Confidence 788888999999998877643 57889874 688987532 1 236789999999999764 4579
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
||++++++.|||||+||||+||||||++++..++|||++++||+|+|+|||++|||+||++||++||+||||+|+||++.
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~ 247 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPK 247 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 99999965469999999999999999999988899999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCc-ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccccccccc--
Q 035501 278 NVTDGLNGFDVGQSSQESYF-HTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHG-- 354 (732)
Q Consensus 278 ~~~~~~~~~d~~~~~~~~yf-~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g-- 354 (732)
++ .++..|++. ..|. ..+..+++..|++.+||++||+||++|+++++||++||||||||||++.+|++.+++
T Consensus 248 ~~-~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~ 322 (633)
T PRK12313 248 DD-DGLAYFDGT----PLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEE 322 (633)
T ss_pred Cc-ccccccCCC----cceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccc
Confidence 74 345555532 1222 223345667899999999999999999999999999999999999999988764432
Q ss_pred --------------ccchhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCC-
Q 035501 355 --------------INMSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKD- 414 (732)
Q Consensus 355 --------------~~~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~- 414 (732)
...+||+++++ .+++++|||+++.++.++.+...+|+|||++|+++|.+.+++++.....
T Consensus 323 ~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~ 402 (633)
T PRK12313 323 GEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIY 402 (633)
T ss_pred cCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccc
Confidence 12468887764 3569999999999999999998999999999999999999998875432
Q ss_pred CCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 035501 415 EEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGG 494 (732)
Q Consensus 415 ~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG 494 (732)
..+.+..+...+.. .+.++. ++++|||+++.|+.++...+.+ ......+++|++.+++||+||
T Consensus 403 ~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~~~~~~~~~g---------------~~~~~~~~~r~~~~~~~t~pG 465 (633)
T PRK12313 403 RKYHHNLLTFSFMY-AFSENF-VLPFSHDEVVHGKKSLMHKMPG---------------DRWQQFANLRLLYTYMITHPG 465 (633)
T ss_pred cccccccchHHHhh-hhhccc-ccCCCCcccccCCccHHHhcCC---------------CHHHHHHHHHHHHHHHHhCCC
Confidence 22333444444432 344444 3789999998887775433211 111235678999999999999
Q ss_pred CCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcC------CceEEEe
Q 035501 495 EGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLAS------TKQIVSS 568 (732)
Q Consensus 495 ~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~------g~~~~~~ 568 (732)
+| |||||+|+|+.. .|.. ..+++|++.+.+. ++.+++|+|+||+||+++|+|+. +..++..
T Consensus 466 ~P-lif~G~E~g~~~---------~~~~-~~~l~W~~~~~~~--~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~ 532 (633)
T PRK12313 466 KK-LLFMGSEFGQFL---------EWKH-DESLEWHLLEDPM--NAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDA 532 (633)
T ss_pred Cc-EeecccccccCc---------cCCc-cCCCCccccCChh--HHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEEC
Confidence 99 889999999852 2222 3569999865433 46899999999999999999973 3566655
Q ss_pred ccCCCcEEEEEeCc------EEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCcc
Q 035501 569 TNEEDKVIVFERGD------LVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVA 642 (732)
Q Consensus 569 ~~~~~~vlaf~R~~------~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~ 642 (732)
.+.+++|++|.|.. ++||+|+++. +...|.|++|.+|+|+++||||+.+|||+++.+.. .+.+ .
T Consensus 533 ~~~~~~vlaf~R~~~~~~~~llvv~N~s~~-~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~-~~~~--------~ 602 (633)
T PRK12313 533 DDADQSVLSFIRKGKNKGDFLVVVFNFTPV-EREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNG-TVKA--------Q 602 (633)
T ss_pred cCCCCCEEEEEEeCCCCCceEEEEEeCCCC-cccceeECCCCCCeEEEEEcCCchhcCCCCcCCCC-ceee--------c
Confidence 55567899999954 9999999987 57789999998999999999999999999875432 2222 2
Q ss_pred ccccCCCCcEEEEEeCcceEEEEEEecc
Q 035501 643 ETNFNNRPNSFRVLSPPRTSVVYYRVEE 670 (732)
Q Consensus 643 ~~~~~~~~~~~~v~lP~~s~~Vl~~~~~ 670 (732)
...++++++++.|+|||++++||++..+
T Consensus 603 ~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 603 EGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred ccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 2358999999999999999999987543
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.8e-92 Score=832.02 Aligned_cols=558 Identities=30% Similarity=0.547 Sum_probs=453.2
Q ss_pred HcccccCCcEEeC----CcEEEEEEcCCCCeEEEEeccCCCCCcccceeeC-CCCEEEEEecCCCCCCCCCCCceEEEEE
Q 035501 52 AKGYLEFGFNRED----GGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERN-EFGVWSISIPDSGGKPAIPHGSRVKFRF 126 (732)
Q Consensus 52 ~~~~~~lG~~~~~----~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~-~~GvW~i~ip~~~g~~~~~~g~~Y~~~~ 126 (732)
...|+.||+|+.. +||+||||||+|++|+|+||||+|++..++|++. +.|+|+++||+. .+|..|+|++
T Consensus 114 ~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~------~~g~~Y~y~v 187 (726)
T PRK05402 114 LRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGL------GEGELYKFEI 187 (726)
T ss_pred chhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCC------CCCCEEEEEE
Confidence 3458899999974 7899999999999999999999999888999987 789999999975 6899999999
Q ss_pred Ee-CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCC--------CCCCCceEEEEecCCCCCC---C
Q 035501 127 KH-DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRP--------PKPKAPRIYEAHVGMSSSE---P 194 (732)
Q Consensus 127 ~~-~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--------~~~~~~~IYE~hv~~~~~~---~ 194 (732)
.. +|.+.++.||||+++..+|.. .++|++++ .|.|+++.. +..++++|||+|||+|+.+ +
T Consensus 188 ~~~~g~~~~~~DPYa~~~~~~~~~-----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 259 (726)
T PRK05402 188 LTADGELLLKADPYAFAAEVRPAT-----ASIVADLS---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGG 259 (726)
T ss_pred eCCCCcEeecCCCceEEEecCCCC-----cEEEeCCc---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCC
Confidence 97 678888999999999888753 57888873 688987532 2346899999999999854 4
Q ss_pred CCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 195 RVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 195 ~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
+.|||++++++.|||||+||||+||||||++++...+|||++++||+|+|+|||++|||+||++||++||+||||+|+||
T Consensus 260 ~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 260 RFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 57999999964459999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccc
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTG-DRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHH 353 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~-~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~ 353 (732)
++.++ .++..|++. ..|++.+ ..+.+..|++..||++||+||++|+++++||++||||||||||++.+|++.+.
T Consensus 340 ~~~~~-~~~~~~~~~----~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~ 414 (726)
T PRK05402 340 FPKDA-HGLARFDGT----ALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDY 414 (726)
T ss_pred CCCCc-cchhccCCC----cceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccc
Confidence 98874 456666632 2344332 34567889988999999999999999999999999999999999998876543
Q ss_pred cc-----------------cchhhhhHhhh-----cceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhc
Q 035501 354 GI-----------------NMSFTGNYNEY-----FNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKN 411 (732)
Q Consensus 354 g~-----------------~~~f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~ 411 (732)
+. ..+||+++++. +++++|||+++.++.++.+...+|.||||.|+++|++.+++++..
T Consensus 415 ~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~ 494 (726)
T PRK05402 415 SRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMER 494 (726)
T ss_pred cccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhh
Confidence 31 24688887653 569999999988999998888899999999999999988888865
Q ss_pred CCC-CCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHH
Q 035501 412 KKD-EEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITM 490 (732)
Q Consensus 412 ~~~-~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~ 490 (732)
... ..+....+...+.. .+.++.+ +++|||+++++++++...+.+ ......+++|++.+++|
T Consensus 495 ~~~~~~~~~~~~~~~~~~-~~~e~~~-l~~sHD~~~~g~~~l~~~~~g---------------~~~~~~~~lrl~~~~~~ 557 (726)
T PRK05402 495 DPIYRKYHHNELTFSLLY-AYSENFV-LPLSHDEVVHGKGSLLGKMPG---------------DDWQKFANLRAYYGYMW 557 (726)
T ss_pred CcccccccccchhHHHhH-hhhcccc-CCCCCceeeeCcccHHhhCCC---------------CHHHHHHHHHHHHHHHH
Confidence 432 12222223333332 3444443 789999999887765432211 11224567899999999
Q ss_pred HcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCC------ce
Q 035501 491 ALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLAST------KQ 564 (732)
Q Consensus 491 t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g------~~ 564 (732)
|+||+| |||||||+|++. .|.. +.+++|++.+.+. ++.+++|+|+|++||+++|+|+.| +.
T Consensus 558 t~pG~P-lif~G~E~g~~~---------~~~~-~~~l~W~~~~~~~--~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~ 624 (726)
T PRK05402 558 AHPGKK-LLFMGGEFGQGR---------EWNH-DASLDWHLLDFPW--HRGVQRLVRDLNHLYRAEPALHELDFDPEGFE 624 (726)
T ss_pred HCCCcC-EeeCchhcCCCC---------CCCc-cCcCCccccCCcc--hHHHHHHHHHHHHHHHhChhhhccccCcCCee
Confidence 999999 889999999973 2222 4679999865432 468999999999999999999753 55
Q ss_pred EEEeccCCCcEEEEEeC------cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCC
Q 035501 565 IVSSTNEEDKVIVFERG------DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGI 638 (732)
Q Consensus 565 ~~~~~~~~~~vlaf~R~------~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~ 638 (732)
++...+.+++|++|.|. .++||+||++. +...|.|++|.+|+|+++||||+.+|||++..+... +.
T Consensus 625 ~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~-~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~~-~~------ 696 (726)
T PRK05402 625 WIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV-PRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGGG-VH------ 696 (726)
T ss_pred EEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC-cccceEECCCCCCeEEEEEcCcchhhCCCCCCCCCc-ee------
Confidence 66665666789999994 39999999987 567899999988999999999999999998765432 22
Q ss_pred CCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 639 PGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 639 ~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
+.+.+|+++++++.|+|||+|++||++.
T Consensus 697 --~~~~~~~g~~~~~~i~lp~~~~~v~~~~ 724 (726)
T PRK05402 697 --AEEVPWHGRPHSLSLTLPPLATLILKPE 724 (726)
T ss_pred --ccccccCCCCCEEEEEeCCCEEEEEEEc
Confidence 2334689999999999999999999874
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=7.7e-93 Score=820.78 Aligned_cols=551 Identities=30% Similarity=0.533 Sum_probs=441.7
Q ss_pred ccccCCcEEeC----CcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCC-CCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 54 GYLEFGFNRED----GGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNE-FGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 54 ~~~~lG~~~~~----~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~-~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
.|+.||+|... +||+||||||+|++|+|+++||+|+...++|++.. .|+|+++||+. .+|..|+|+|..
T Consensus 13 ~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~------~~g~~Y~y~v~~ 86 (613)
T TIGR01515 13 SYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGI------GEGELYKYEIVT 86 (613)
T ss_pred hHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCC------CCCCEEEEEEEC
Confidence 47899999986 68999999999999999999999988888998864 89999999975 689999999987
Q ss_pred -CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCC-----CCCC---CCCCceEEEEecCCCCCCCCCCCh
Q 035501 129 -DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKY-----PRPP---KPKAPRIYEAHVGMSSSEPRVNSY 199 (732)
Q Consensus 129 -~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-----~~~~---~~~~~~IYE~hv~~~~~~~~~g~~ 199 (732)
+|....++||||+++..+|.. .++++|+. .|.|++ .+++ ..++++|||+|||+|+.+ |||
T Consensus 87 ~~g~~~~~~DPYA~~~~~~~~~-----~s~v~d~~---~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~ 155 (613)
T TIGR01515 87 NNGEIRLKADPYAFYAEVRPNT-----ASLVYDLE---GYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSY 155 (613)
T ss_pred CCCcEEEeCCCCEeeeccCCCC-----cEEEECCc---cCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCH
Confidence 677778899999998877743 57888874 465554 3322 235789999999999764 899
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCC
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNV 279 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~ 279 (732)
++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 99996445999999999999999999988889999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCCCCCCCCCCCcccC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccc---
Q 035501 280 TDGLNGFDVGQSSQESYFHTG-DRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGI--- 355 (732)
Q Consensus 280 ~~~~~~~d~~~~~~~~yf~~~-~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~--- 355 (732)
.++..|++. ..|++.. ..+++..|+.++||+++|+||++|+++++||++||||||||||++++|++.+++.
T Consensus 236 -~~~~~~~~~----~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~ 310 (613)
T TIGR01515 236 -HGLAEFDGT----PLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG 310 (613)
T ss_pred -chhhccCCC----cceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccc
Confidence 345555521 2344332 3355678999999999999999999999999999999999999998887643322
Q ss_pred --------------cchhhhhHhhh-----cceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCC-C
Q 035501 356 --------------NMSFTGNYNEY-----FNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKD-E 415 (732)
Q Consensus 356 --------------~~~f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~-~ 415 (732)
...||+++++. +++++|||+++.++.++.+...+|.|||++|++.|.+.+++++..... .
T Consensus 311 ~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~ 390 (613)
T TIGR01515 311 EWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVER 390 (613)
T ss_pred cccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhH
Confidence 24688887653 569999999999999999988899999999999999988888854321 1
Q ss_pred CccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCC
Q 035501 416 EWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGE 495 (732)
Q Consensus 416 ~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~ 495 (732)
......+...+.. .+.+..+ +++|||+++.|++++...+.+ ......++.|++++++||+||+
T Consensus 391 ~~~~~~~~~~~~~-~~~e~~~-~~~sHD~~~~g~~~i~~~~~g---------------~~~~~~~~~r~~~~~~~t~pG~ 453 (613)
T TIGR01515 391 QYHHQLITFSMLY-AFSENFV-LPLSHDEVVHGKKSLLNKMPG---------------DYWQKFANYRALLGYMWAHPGK 453 (613)
T ss_pred hhccccccHHHHH-Hhhhccc-cCCCCCCcccCcccHHHhCCC---------------chHHHHHHHHHHHHHHHhCCCC
Confidence 1111111112221 3344444 789999999888776433211 1112356788999999999999
Q ss_pred CeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcC------CceEEEec
Q 035501 496 GYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLAS------TKQIVSST 569 (732)
Q Consensus 496 P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~------g~~~~~~~ 569 (732)
| |||||+|+|+.. .|.. .+.++|++.+.+. ++.+++|+|+|++||+++|+|+. ++.|+...
T Consensus 454 p-lif~G~E~g~~~---------~~~~-~~~l~W~~~~~~~--~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~ 520 (613)
T TIGR01515 454 K-LLFMGSEFAQGS---------EWND-TEQLDWHLLSFPM--HQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVD 520 (613)
T ss_pred C-EEEcchhcCcCC---------CCCC-CccCCCccccCcc--cHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcc
Confidence 9 889999999942 2222 3579998765432 56899999999999999999964 35666665
Q ss_pred cCCCcEEEEEeC------cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccc
Q 035501 570 NEEDKVIVFERG------DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAE 643 (732)
Q Consensus 570 ~~~~~vlaf~R~------~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 643 (732)
+.+++|++|.|. .++||+||++. +..+|+|++|.+|+|+++|||++..|||.++.+... ..+ ..
T Consensus 521 ~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~-~~~--------~~ 590 (613)
T TIGR01515 521 DDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP-LSA--------EE 590 (613)
T ss_pred cCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc-eec--------cc
Confidence 667789999994 39999999997 678999999988999999999999999999876442 111 23
Q ss_pred cccCCCCcEEEEEeCcceEEEEE
Q 035501 644 TNFNNRPNSFRVLSPPRTSVVYY 666 (732)
Q Consensus 644 ~~~~~~~~~~~v~lP~~s~~Vl~ 666 (732)
..++++++++.|+|||++++||+
T Consensus 591 ~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 591 GALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred cccCCCCCEEEEEeCCcEEEEeC
Confidence 46899999999999999999984
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-90 Score=771.88 Aligned_cols=557 Identities=30% Similarity=0.495 Sum_probs=457.6
Q ss_pred ccccCCcEEeCC---cEEEEEEcCCCCeEEEEeccCCCCCcccceeeC-CCCEEEEEecCCCCCCCCCCCceEEEEEEe-
Q 035501 54 GYLEFGFNREDG---GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERN-EFGVWSISIPDSGGKPAIPHGSRVKFRFKH- 128 (732)
Q Consensus 54 ~~~~lG~~~~~~---g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~-~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~- 128 (732)
-|++||||+... ||+|+||||+|++|+|+|+||+|++..++|..+ +.|+|+++||+. ..|++|||++..
T Consensus 22 ~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~------~~G~~Yky~l~~~ 95 (628)
T COG0296 22 LYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGA------PPGTRYKYELIDP 95 (628)
T ss_pred hHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCC------CCCCeEEEEEeCC
Confidence 378899998533 699999999999999999999999988888753 789999999975 789999999998
Q ss_pred CCeEeecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCC----CC--CCCCCceEEEEecCCCCCCCCCCChHhH
Q 035501 129 DGVFIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYP----RP--PKPKAPRIYEAHVGMSSSEPRVNSYREF 202 (732)
Q Consensus 129 ~g~~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~----~~--~~~~~~~IYE~hv~~~~~~~~~g~~~~~ 202 (732)
+|....++||||++....|.+ .++|++++ .|.|++. +. +..++++|||+|||+|+.+ ..-++.++
T Consensus 96 ~g~~~~~~DP~a~~~~~~p~~-----aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~ 166 (628)
T COG0296 96 SGQLRLKADPYARRQEVGPHT-----ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFEL 166 (628)
T ss_pred CCceeeccCchhhccCCCCCC-----cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHH
Confidence 788888999999999888865 57888874 4888844 22 2457999999999999985 55456666
Q ss_pred HHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCC
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDG 282 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~ 282 (732)
++++|||||+||||||+||||.|||...+|||+++.||||+++||||+|||+||++||++||.||||+|+||++++. .+
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~-~~ 245 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NY 245 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc-ch
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999974 67
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccccccccccc------
Q 035501 283 LNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGIN------ 356 (732)
Q Consensus 283 ~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~------ 356 (732)
+..||+. .-.-+....++.++.|++..+|+++++||+||+++++||+++|||||+|+|+|.+|++.+....
T Consensus 246 L~~fdg~---~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~ 322 (628)
T COG0296 246 LARFDGT---FLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVP 322 (628)
T ss_pred hhhcCCc---cccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccc
Confidence 8888843 1122223457889999999999999999999999999999999999999999999998752211
Q ss_pred -----------chhhhhHhh-----hcceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhcCC-CCCccH
Q 035501 357 -----------MSFTGNYNE-----YFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKK-DEEWSM 419 (732)
Q Consensus 357 -----------~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~-~~~~~~ 419 (732)
.+|.++.+. .+++++|+|+|++++..+.+...+|.||+|+++|+++++...|+...+ ...+..
T Consensus 323 n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h 402 (628)
T COG0296 323 NEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHH 402 (628)
T ss_pred cccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCcccccccc
Confidence 234444332 345899999999999999999999999999999999999888887665 334455
Q ss_pred HHHHHHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEe
Q 035501 420 KEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLN 499 (732)
Q Consensus 420 ~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~li 499 (732)
+++...+.. .....++|+.||||+.+|+++++..|.... ....+..|.+.++|+++||+| |+
T Consensus 403 ~~~tf~~~y--~~se~~~l~~sHDevvhGk~sl~~rm~g~~---------------~~~~a~lr~~~a~~~~~Pgk~-LL 464 (628)
T COG0296 403 GELTFGLLY--AFSENVVLPLSHDEVVHGKRSLGERMPGDA---------------WQKFANLRALAAYMWLHPGKP-LL 464 (628)
T ss_pred CCCcccccc--ccceeEeccccccceeecccchhccCCcch---------------hhhHHHHHHHHHHHHhCCCce-ee
Confidence 555555542 334556699999999999998765443221 124567888999999999999 88
Q ss_pred ecCCCCCCCCccCCCCCCCcCccccccCCCccCCc--ccccchHHHHHHHHHHHHHHhCCCCc------CCceEEEeccC
Q 035501 500 FMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDA--DHLRYKFMNAFGRAMNELDDKFPFLA------STKQIVSSTNE 571 (732)
Q Consensus 500 y~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~--~~~~~~~l~~f~r~Li~lR~~~~aL~------~g~~~~~~~~~ 571 (732)
|||+|||.. ..|.+. +.++|.+++. +..+++.+.+|.+.|.++.+..+++. .++.|+...+.
T Consensus 465 FMG~Efgq~---------~e~~~~-~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~ 534 (628)
T COG0296 465 FMGEEFGQG---------REWNFF-SSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDA 534 (628)
T ss_pred ecchhhccC---------CCCccc-CCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCch
Confidence 999999983 455543 4589977665 34446789999999999988888875 46889988887
Q ss_pred CCcEEEEEeC-------cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCcccc
Q 035501 572 EDKVIVFERG-------DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAET 644 (732)
Q Consensus 572 ~~~vlaf~R~-------~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 644 (732)
+.+|++|.|. .++++.|+++. ++..|.+++|.+|+|++++|||+..|||++..+....+ .+...
T Consensus 535 ~~~v~af~R~l~~~~~~~lv~~~n~~~~-~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~~--------~~~~~ 605 (628)
T COG0296 535 ENSVLAFYRRLLALRHEHLVVVNNFTPV-PRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNLGLPV--------SGEDI 605 (628)
T ss_pred hhhHHHHHHHHhhcCCceEEEEeCCCCC-cccccccCCcccccEEEeccchHHHhcCCcccccccee--------cceee
Confidence 7789999992 28888888887 78899999998999999999999999999876654321 12334
Q ss_pred ccCCCCcEEEEEeCcceEEEEE
Q 035501 645 NFNNRPNSFRVLSPPRTSVVYY 666 (732)
Q Consensus 645 ~~~~~~~~~~v~lP~~s~~Vl~ 666 (732)
.++++..+++++|||.+++||+
T Consensus 606 ~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 606 LWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred eccCcceeeEEecCCceeeEee
Confidence 5678888999999999999985
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.1e-78 Score=703.22 Aligned_cols=506 Identities=20% Similarity=0.293 Sum_probs=374.2
Q ss_pred cCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCC----cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEeCCeE
Q 035501 57 EFGFNREDGGIVYREWAPAAKEAQLIGDFNGWDG----SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDGVF 132 (732)
Q Consensus 57 ~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~----~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~ 132 (732)
+||+++..+||+|+||||+|++|+|++ |++|+. ..++|++.++|+|+++||+. .+|++|+|+|+.+|..
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~------~~g~~Y~y~v~~~~~~ 83 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGD------LHGYFYTYQVCINGKW 83 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCC------CCCCEEEEEEEcCCCe
Confidence 799999999999999999999999998 888754 26899988899999999975 7899999999986666
Q ss_pred eecccccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCC-C--CCCCCceEEEEecCCCCCCCC-----CCChHhHHH
Q 035501 133 IDRIPAWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPR-P--PKPKAPRIYEAHVGMSSSEPR-----VNSYREFAD 204 (732)
Q Consensus 133 ~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~--~~~~~~~IYE~hv~~~~~~~~-----~g~~~~~~~ 204 (732)
...+||||+.+..++. .++|+|+....++.|.+++ + +.+++++|||+|||+|+.+++ .|||+++++
T Consensus 84 ~~~~DPya~~~~~~~~------~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e 157 (605)
T TIGR02104 84 RETVDPYAKAVTVNGK------RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTE 157 (605)
T ss_pred EEEcCCCcceeccCCC------cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeec
Confidence 6789999999877653 5788887655567887654 3 256789999999999986543 589999885
Q ss_pred h----------hhhHHHHCCCCEEEECCcccccc--------cCCCCcccCccccCCCCCCC--------HHHHHHHHHH
Q 035501 205 D----------VLPRIRANNYNTVQLMAVMEHSY--------YASFGYHVTNFFAASSRSGT--------PEDLKYLIDK 258 (732)
Q Consensus 205 ~----------~LdyLk~LGvt~I~L~Pi~e~~~--------~~~~GY~~~~y~av~~~~Gt--------~~dfk~LV~~ 258 (732)
. +|||||+||||+||||||++++. ..+|||++.+||+|+++||+ ++|||+||++
T Consensus 158 ~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~ 237 (605)
T TIGR02104 158 TGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQA 237 (605)
T ss_pred cCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHH
Confidence 3 59999999999999999999864 24699999999999999987 5899999999
Q ss_pred HHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCC-CC-CCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 035501 259 AHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHK-LW-DSRLFNYANWEVLRFLLSNLRWWIEEFK 336 (732)
Q Consensus 259 ~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~-~w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~g 336 (732)
||++||+||||+|+||++..... .|+.. .+..||+....+... .| .++++|+++|+||++|+++++||++|||
T Consensus 238 ~H~~Gi~VilDvV~NH~~~~~~~---~f~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~ 312 (605)
T TIGR02104 238 LHENGIRVIMDVVYNHTYSREES---PFEKT--VPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN 312 (605)
T ss_pred HHHCCCEEEEEEEcCCccCCCCC---cccCC--CCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999854222 23321 122344433333222 22 2468999999999999999999999999
Q ss_pred ceEEeecCccccccccccccchhhhhHhh-----hcceEEEeeccCCCCCCCccc-cc----CCceecccccccccHHHH
Q 035501 337 FDGFRFDGVTSMLYHHHGINMSFTGNYNE-----YFNATVIAEDVSGMPGLGSPV-SM----GGIGFDYRLAMAIPDRWI 406 (732)
Q Consensus 337 iDGfR~D~~~~~~~~~~g~~~~f~~~~~~-----~~~~~~iaE~~~~~~~~~~~~-~~----~g~gFd~~~~~~~~~~~~ 406 (732)
|||||||+|.++ +.+||++++. .+++++|||.|...+.+.... .. .+..-...|+..+.+.++
T Consensus 313 iDGfR~D~~~~~-------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~ 385 (605)
T TIGR02104 313 IDGFRFDLMGIH-------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALK 385 (605)
T ss_pred CCEEEEechhcC-------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhc
Confidence 999999999776 4577777654 356999999987554433211 00 011111234444444444
Q ss_pred HHHhcCCC------CCccHHHHHHHhhc----------CcCcccceecccccccccccchhhHhhhccHhhhhccccCCC
Q 035501 407 DYLKNKKD------EEWSMKEISQSLTN----------RRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTD 470 (732)
Q Consensus 407 ~~l~~~~~------~~~~~~~l~~~l~~----------~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~ 470 (732)
.+..+... .......+...+.. ...+..+|||++|||+.|+.++.. +..
T Consensus 386 ~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~---------~~~------ 450 (605)
T TIGR02104 386 GSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS---------LAN------ 450 (605)
T ss_pred CCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH---------hhC------
Confidence 22211110 11234555555542 124567899999999888655421 110
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccc----cccCCCccCCcccccchHHHHHH
Q 035501 471 ASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYE----KCRRQWNLVDADHLRYKFMNAFG 546 (732)
Q Consensus 471 ~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~----~~~~~W~~~~~~~~~~~~l~~f~ 546 (732)
.....+...++.|++.+++||+||+| |||||||+|++. .|++++|+ .++++|+..+. ++.+++|+
T Consensus 451 ~~~~~~~~~~r~rla~alllts~GiP-~iy~GdE~g~s~------~g~~n~y~~~d~~~~ldW~~~~~----~~~~~~~~ 519 (605)
T TIGR02104 451 PDETEEQLKKRQKLATAILLLSQGIP-FLHAGQEFMRTK------QGDENSYNSPDSINQLDWDRKAT----FKDDVNYI 519 (605)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCc-eeecchhhhccC------CCCCCCccCCCcccccCcccccc----chHHHHHH
Confidence 01123446778899999999999999 789999999973 35666654 34689986543 35799999
Q ss_pred HHHHHHHHhCCCCcCCceE-----E-EeccCCCcEEEEEeC---------cEEEEEECCCCCccccEEEecCCCCcEEEE
Q 035501 547 RAMNELDDKFPFLASTKQI-----V-SSTNEEDKVIVFERG---------DLVFVFNFHPENTYEGYKVGCDLPGKYRVA 611 (732)
Q Consensus 547 r~Li~lR~~~~aL~~g~~~-----~-~~~~~~~~vlaf~R~---------~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~ 611 (732)
|+||+|||++|+|+.+... + .....+..|++|.|. .++|++|++.+ .+.+.+|..|.|+.+
T Consensus 520 ~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~----~~~v~lp~~~~w~~~ 595 (605)
T TIGR02104 520 KGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPE----PVDIQLPSDGTWNVV 595 (605)
T ss_pred HHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCC----CeEEECCCCCCEEEE
Confidence 9999999999999987421 1 122235679999993 38999999976 457777767899999
Q ss_pred ecCCCC
Q 035501 612 LDSDAW 617 (732)
Q Consensus 612 l~sd~~ 617 (732)
++++..
T Consensus 596 ~~~~~~ 601 (605)
T TIGR02104 596 VDNKNA 601 (605)
T ss_pred ECCCcC
Confidence 987653
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.5e-77 Score=695.38 Aligned_cols=543 Identities=21% Similarity=0.322 Sum_probs=396.2
Q ss_pred cccCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCC---cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe---
Q 035501 55 YLEFGFNREDGGIVYREWAPAAKEAQLIGDFNGWDG---SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH--- 128 (732)
Q Consensus 55 ~~~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~---~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~--- 128 (732)
..+||+++.++||+|+||||+|++|+|++ |+++.. ..++|++.++|+|+++||+. .+|.+|+|+|+.
T Consensus 4 ~~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~------~~g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 4 PFPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGA------QPGQLYGYRVHGPYD 76 (688)
T ss_pred CcCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCC------CCCCEEEEEEeeeeC
Confidence 45799999999999999999999999997 655442 25789988899999999975 789999999985
Q ss_pred --CCeE----eecccccccccccCCCC----CC-------------------CCcceeeeCCCCCCCCCCCCC--CCC-C
Q 035501 129 --DGVF----IDRIPAWIKYATVDSSR----FG-------------------APYDGVYWDPPPSERYEFKYP--RPP-K 176 (732)
Q Consensus 129 --~g~~----~~~~dpya~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~w~~~--~~~-~ 176 (732)
.|.+ ...+||||+.+..++.- .+ ....++|+|+ .|.|+++ +|. +
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 2433 34699999988765310 00 0115677775 4889865 333 4
Q ss_pred CCCceEEEEecCCCCCC------CCCCChHhHHHh-hhhHHHHCCCCEEEECCcccccc---------cCCCCcccCccc
Q 035501 177 PKAPRIYEAHVGMSSSE------PRVNSYREFADD-VLPRIRANNYNTVQLMAVMEHSY---------YASFGYHVTNFF 240 (732)
Q Consensus 177 ~~~~~IYE~hv~~~~~~------~~~g~~~~~~~~-~LdyLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~y~ 240 (732)
++++||||+||++|+.. ...|||+|++++ +|||||+||||+||||||+++.. .++|||+|.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 68999999999999863 235999999963 69999999999999999999754 247999999999
Q ss_pred cCCCCC---CCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCC-CCCCCCCCCCCCcccCCC--CCCCCC--CCCC
Q 035501 241 AASSRS---GTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLN-GFDVGQSSQESYFHTGDR--GYHKLW--DSRL 312 (732)
Q Consensus 241 av~~~~---Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~-~~d~~~~~~~~yf~~~~~--g~~~~w--~~~~ 312 (732)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+.. .+.+ .....||+.... +.+..| ++++
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~--~d~~~yy~~~~~~~~~~~~~~g~gn~ 310 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRG--IDNASYYRLQPDDKRYYINDTGTGNT 310 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccC--CCCCcceEecCCCCceecCCCCcccc
Confidence 999999 57999999999999999999999999999986533211 1111 123356654322 333333 3578
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccc--cchhhhhHhh---hcceEEEeeccCCCCCCCcccc
Q 035501 313 FNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGI--NMSFTGNYNE---YFNATVIAEDVSGMPGLGSPVS 387 (732)
Q Consensus 313 ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~--~~~f~~~~~~---~~~~~~iaE~~~~~~~~~~~~~ 387 (732)
||+++|+||++|+++++||++||||||||||+|..|.....+. ...|++.++. .+++++|||.|...+.. ..
T Consensus 311 ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~---~~ 387 (688)
T TIGR02100 311 LNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPGG---YQ 387 (688)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCCCCc---cc
Confidence 9999999999999999999999999999999999886533222 2467777775 34599999998643221 11
Q ss_pred cCCceec---ccccccccHHHHHHHhcCCCCCccHHHHHHHhhc--------CcCcccceecccccccccccchhhHhhh
Q 035501 388 MGGIGFD---YRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTN--------RRYTEKCISYAESHDQAIVGDKTIAFLL 456 (732)
Q Consensus 388 ~~g~gFd---~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~--------~~~~~~~v~f~~nHD~~r~g~~~~~f~l 456 (732)
. + .|+ ..|+..|.+.++.++++.. ....++...+.. .+.+..+|||++|||+ |+|
T Consensus 388 ~-~-~~~~~~~~~Nd~frd~ir~f~~g~~---~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~---------~tl 453 (688)
T TIGR02100 388 V-G-NFPPGWAEWNDRYRDDMRRFWRGDA---GMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDG---------FTL 453 (688)
T ss_pred c-c-CCCCceEEecHHHHHHHHHHHcCCC---CcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCC---------chH
Confidence 1 1 233 4566677788888887643 345677777753 1246789999999995 456
Q ss_pred ccHhhhhccccCCC------------------CCcc-----hHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCC
Q 035501 457 MDQEMYTGMSSLTD------------------ASPT-----IERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDF 513 (732)
Q Consensus 457 ~d~~~y~~~~~~~~------------------~~~~-----~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~ 513 (732)
.|...|...++... +++. .+...+++|++.+++|++||+| |||||||||++
T Consensus 454 ~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP-~i~~GdE~g~t----- 527 (688)
T TIGR02100 454 RDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTP-MLLAGDEFGRT----- 527 (688)
T ss_pred HHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCc-eeeecHhhccC-----
Confidence 67767755443211 1111 2233567899999999999999 77999999997
Q ss_pred CCCCCcCcccc----ccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCce-----------EEEec---------
Q 035501 514 PREGNEWSYEK----CRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQ-----------IVSST--------- 569 (732)
Q Consensus 514 p~~g~~~s~~~----~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~-----------~~~~~--------- 569 (732)
+.|++++|++ +.++|+..+. +++|++|+|+||+|||+||+|+.+.. .+.+.
T Consensus 528 -~~G~~n~y~~~~~~~~~dW~~~~~----~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~ 602 (688)
T TIGR02100 528 -QQGNNNAYCQDNEIGWVDWSLDEG----DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTE 602 (688)
T ss_pred -CCCCCCCccCCCcccccCcccccc----cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCCh
Confidence 4589999985 3589986543 45899999999999999999987521 12221
Q ss_pred ----cCCCcEEEEEeC------------cEEEEEECCCCCccccEEEecCCC-CcEEEEecCCCCcccCCCCcCCccccc
Q 035501 570 ----NEEDKVIVFERG------------DLVFVFNFHPENTYEGYKVGCDLP-GKYRVALDSDAWGFGGDGRVGHNIDHF 632 (732)
Q Consensus 570 ----~~~~~vlaf~R~------------~~lvv~N~s~~~~~~~~~i~~p~~-g~~~~~l~sd~~~~gG~~~~~~~~~~~ 632 (732)
+...++|+|... .++|++|.+.+ ...+.+|.. ..|+.+++|.... .... .
T Consensus 603 ~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~----~~~~~lP~~~~~w~~~~dt~~~~--~~~~-----~-- 669 (688)
T TIGR02100 603 EDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPE----PVPFKLPGGGGRWELVLDTADEE--APGI-----H-- 669 (688)
T ss_pred hhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCC----CeEEECCCCCCcEEEEecCCCCC--Cccc-----c--
Confidence 123478888761 38999999976 356666643 4899999985421 1100 0
Q ss_pred cCCCCCCCccccccCCCCcEEEEEeCcceEEEEEE
Q 035501 633 TSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYR 667 (732)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~ 667 (732)
....-.+.|||+|++||.+
T Consensus 670 ----------------~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 670 ----------------LDAGQEAELPARSVLLLRR 688 (688)
T ss_pred ----------------ccCCCEEEEcCCEEEEEeC
Confidence 0012358999999999964
No 14
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.9e-77 Score=685.21 Aligned_cols=512 Identities=18% Similarity=0.290 Sum_probs=372.9
Q ss_pred cccCCcEEeCCcEEEEEEcCCCCeEEEEeccCCC-CCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-----
Q 035501 55 YLEFGFNREDGGIVYREWAPAAKEAQLIGDFNGW-DGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH----- 128 (732)
Q Consensus 55 ~~~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w-~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~----- 128 (732)
..+||+++.++||+|+||||+|++|+|++ |+++ ....++|+++++|+|+++||+. .+|++|+|+|..
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~------~~G~~Y~yrv~g~~~p~ 81 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGA------RPGLRYGYRVHGPWQPA 81 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCC------CCCCEEEEEEccccCcc
Confidence 56899999999999999999999999998 6654 2356899888899999999985 789999999974
Q ss_pred CCeE----eecccccccccccCCC----------------CCCCCcceeeeCCCCCCCCCCCCCCCC--CCCCceEEEEe
Q 035501 129 DGVF----IDRIPAWIKYATVDSS----------------RFGAPYDGVYWDPPPSERYEFKYPRPP--KPKAPRIYEAH 186 (732)
Q Consensus 129 ~g~~----~~~~dpya~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~IYE~h 186 (732)
.|.+ ...+||||+.+..+.. +.....+++|.++ +|.|+++.++ +++++||||+|
T Consensus 82 ~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~h 157 (658)
T PRK03705 82 QGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEAH 157 (658)
T ss_pred cCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEEe
Confidence 2332 3359999999875321 0001124566653 5899876554 46899999999
Q ss_pred cCCCCC-CC-----CCCChHhHHH-hhhhHHHHCCCCEEEECCcccccc---------cCCCCcccCccccCCCCCCCH-
Q 035501 187 VGMSSS-EP-----RVNSYREFAD-DVLPRIRANNYNTVQLMAVMEHSY---------YASFGYHVTNFFAASSRSGTP- 249 (732)
Q Consensus 187 v~~~~~-~~-----~~g~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~y~av~~~~Gt~- 249 (732)
||+||. ++ ..|||+++++ .+|||||+||||+||||||+++.. .++|||+|.+||+|+++|||.
T Consensus 158 vr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~ 237 (658)
T PRK03705 158 VRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGP 237 (658)
T ss_pred hhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCC
Confidence 999985 22 2499999986 369999999999999999999753 368999999999999999984
Q ss_pred ----HHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCC-CCCCCCCCCCCCcccCCCCCCCCCC--CCCCCCCCHHHHH
Q 035501 250 ----EDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLN-GFDVGQSSQESYFHTGDRGYHKLWD--SRLFNYANWEVLR 322 (732)
Q Consensus 250 ----~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~-~~d~~~~~~~~yf~~~~~g~~~~w~--~~~ln~~~p~v~~ 322 (732)
+|||+||++||++||+||||||+||++.....+.. .+. ......||+....+.+..|. +++||+++|+|++
T Consensus 238 ~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~--~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~ 315 (658)
T PRK03705 238 ETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLR--GIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVD 315 (658)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcc--cCCCccceEECCCCCcCCCCCccCcccCCCHHHHH
Confidence 79999999999999999999999999974322211 111 11234566555555555563 5799999999999
Q ss_pred HHHHHHHHHHHhcCceEEeecCcccccccccccc--chhhhhHhh---hcceEEEeeccCCCCCCCcccccCCceec---
Q 035501 323 FLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGIN--MSFTGNYNE---YFNATVIAEDVSGMPGLGSPVSMGGIGFD--- 394 (732)
Q Consensus 323 ~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~--~~f~~~~~~---~~~~~~iaE~~~~~~~~~~~~~~~g~gFd--- 394 (732)
+|+++++||++||||||||||+|.+|.... +.. ..+++.++. ..++++|||.|...+.... . + .|+
T Consensus 316 ~iid~l~~W~~e~gVDGFRfD~a~~l~~~~-~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~~~~~~---~-g-~~~~~~ 389 (658)
T PRK03705 316 WAIDCLRYWVETCHVDGFRFDLATVLGRTP-EFRQDAPLFTAIQNDPVLSQVKLIAEPWDIGPGGYQ---V-G-NFPPPF 389 (658)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcHhhhCcCc-ccchhhHHHHHHhhCccccceEEEEecccCCCChhh---h-c-CCCcce
Confidence 999999999999999999999999885321 111 123344443 2369999999864332111 1 1 122
Q ss_pred ccccccccHHHHHHHhcCCCCCccHHHHHHHhhc--------CcCcccceecccccccccccchhhHhhhccHhhhhccc
Q 035501 395 YRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTN--------RRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMS 466 (732)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~--------~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~ 466 (732)
..|+..|.+.++.++.+.. ..+.++...+.. .+.+..+|||+++|| +|+|.|+..|...+
T Consensus 390 ~~~Nd~fRd~ir~f~~~~~---~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD---------~~TL~D~~~~~~~h 457 (658)
T PRK03705 390 AEWNDHFRDAARRFWLHGD---LPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHD---------GFTLRDCVCFNQKH 457 (658)
T ss_pred EEEchHHHHHHHHHHccCC---CcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCC---------CccHHHHHhhhccc
Confidence 2445556666666665432 345555555532 235778999999999 56677877777654
Q ss_pred cCC------------------CCCcc-----hHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccc
Q 035501 467 SLT------------------DASPT-----IERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYE 523 (732)
Q Consensus 467 ~~~------------------~~~~~-----~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~ 523 (732)
+.. .+.+. .+...++.|++.+++|+++|+| ||+||||||++ +.|++++|+
T Consensus 458 n~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P-~i~~GdE~grt------q~G~nN~y~ 530 (658)
T PRK03705 458 NEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTP-MLLAGDEHGHS------QHGNNNAYC 530 (658)
T ss_pred hhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCch-HHHhhHHhccC------CCCCCCCcc
Confidence 321 11111 2334567889999999999999 77999999997 569999998
Q ss_pred c----ccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCce---------EEEecc---------CCCcEEEEEe-
Q 035501 524 K----CRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQ---------IVSSTN---------EEDKVIVFER- 580 (732)
Q Consensus 524 ~----~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~---------~~~~~~---------~~~~vlaf~R- 580 (732)
. +.++|+..+ +++++|+|+||+|||+||+|+.... |+.... ....+++|..
T Consensus 531 ~~~~i~~~dW~~~~------~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~ 604 (658)
T PRK03705 531 QDNALTWLDWSQAD------RGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS 604 (658)
T ss_pred CCCCccccccchhh------hHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC
Confidence 6 458898532 4799999999999999999975421 221110 1135677766
Q ss_pred CcEEEEEECCCCCccccEEEecCCCCcEEEEecCC
Q 035501 581 GDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSD 615 (732)
Q Consensus 581 ~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd 615 (732)
+.++|++|.+.+ ...+.+|. +.|+.+++.+
T Consensus 605 ~~~~v~~N~~~~----~~~~~lp~-~~w~~~~~~~ 634 (658)
T PRK03705 605 DRWLIAINATLE----VTEIVLPE-GEWHAIPPFA 634 (658)
T ss_pred CCEEEEECCCCC----CeEEECCC-cceEEEEccC
Confidence 469999999876 45777874 7999996543
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=8.5e-75 Score=688.74 Aligned_cols=560 Identities=18% Similarity=0.269 Sum_probs=384.7
Q ss_pred cCCcEEeCCc-EEEEEEcCCCCeEEEEec-cCCCCC--cccceeeCCCCEEEEEecCCC-CCCCCCCCceEEEEEEeCCe
Q 035501 57 EFGFNREDGG-IVYREWAPAAKEAQLIGD-FNGWDG--SNHKMERNEFGVWSISIPDSG-GKPAIPHGSRVKFRFKHDGV 131 (732)
Q Consensus 57 ~lG~~~~~~g-~~f~~wAP~A~~V~L~gd-fn~w~~--~~~~m~~~~~GvW~i~ip~~~-g~~~~~~g~~Y~~~~~~~g~ 131 (732)
+||+++..+| ++|+||||+|++|+|++. ++++.. ..++|++.++|+|+++|++.. |. .-++|.+|+|+|...+.
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~-~d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGI-DSLTGYYYHYEITRGGD 396 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCc-ccCCCceEEEEEECCCc
Confidence 6999998666 899999999999999983 344543 368999988999999999532 11 12589999999998777
Q ss_pred Eeeccccccccccc-CCC---CCCCCcceeeeCCCCC--CCCCCCCCCC-CCCCCceEEEEecCCCCCCC--------CC
Q 035501 132 FIDRIPAWIKYATV-DSS---RFGAPYDGVYWDPPPS--ERYEFKYPRP-PKPKAPRIYEAHVGMSSSEP--------RV 196 (732)
Q Consensus 132 ~~~~~dpya~~~~~-~~~---~~~~~~~~~~~~~~~~--~~~~w~~~~~-~~~~~~~IYE~hv~~~~~~~--------~~ 196 (732)
....+||||+.+.. +.. .......++++|++.. +.|+|.+..+ ..+++++|||+|||+|+.++ ..
T Consensus 397 ~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~ 476 (1111)
T TIGR02102 397 KVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQF 476 (1111)
T ss_pred eEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCC
Confidence 77889999998764 210 0011235788887532 2466664222 25789999999999998643 25
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCccccc------------------ccCCCCcccCccccCCCCCCC--------HH
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHS------------------YYASFGYHVTNFFAASSRSGT--------PE 250 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~------------------~~~~~GY~~~~y~av~~~~Gt--------~~ 250 (732)
|+|++|++ +|||||+|||||||||||+++. ...+|||+|.+||+|+++||+ ++
T Consensus 477 Gtf~gl~e-kLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 477 GTFAAFVE-KLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIA 555 (1111)
T ss_pred cCHHHHHH-hHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHH
Confidence 99999995 7999999999999999999742 123699999999999999998 58
Q ss_pred HHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcc-cCCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q 035501 251 DLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH-TGDRGY-HKLWDSRLFNYANWEVLRFLLSNL 328 (732)
Q Consensus 251 dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~-~~~~g~-~~~w~~~~ln~~~p~v~~~i~~~l 328 (732)
|||+||++||++||+||||||+||++..+ .|+.. .+.||+ .+..+. ...|+++++|.++++||++|++++
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~---~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl 627 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDL---EPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSI 627 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc-----ccccc---CCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999998764 23311 123443 333332 345778899999999999999999
Q ss_pred HHHHHhcCceEEeecCccccccccccccchhhhhHh-----hhcceEEEeeccCCCCCC----CcccccCCceecccccc
Q 035501 329 RWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYN-----EYFNATVIAEDVSGMPGL----GSPVSMGGIGFDYRLAM 399 (732)
Q Consensus 329 ~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~-----~~~~~~~iaE~~~~~~~~----~~~~~~~g~gFd~~~~~ 399 (732)
+||++||||||||||+|.++ ...++..+. ..+++++|||.|.....- ..+.......++. ...
T Consensus 628 ~yWv~ey~VDGFRfDl~g~~-------d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~-~ig 699 (1111)
T TIGR02102 628 KYLVDEFKVDGFRFDMMGDH-------DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTE-TVG 699 (1111)
T ss_pred HHHHHhcCCcEEEEeccccC-------CHHHHHHHHHHHHHhCcCEEEEEecccccCCCCcccccccchhhHhcCC-ccc
Confidence 99999999999999999754 234444332 246799999998642110 0111111111111 112
Q ss_pred cccHHHHHHHhcCCC----------CCccHHHHHHHhhcC------cCcccceecccccccccccchhhHhhhccHhhhh
Q 035501 400 AIPDRWIDYLKNKKD----------EEWSMKEISQSLTNR------RYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYT 463 (732)
Q Consensus 400 ~~~~~~~~~l~~~~~----------~~~~~~~l~~~l~~~------~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~ 463 (732)
.|.+.+++.+++... ....+..+...+... ..+.++|||++|||+.+ |+|...|.
T Consensus 700 ~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~aHDn~T---------L~D~l~~~ 770 (1111)
T TIGR02102 700 VFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAAHDNLT---------LHDVIAQS 770 (1111)
T ss_pred EecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCcccEEEEEecCCCCc---------hHhhhhhc
Confidence 466778888875321 123455666666532 35678999999999654 56666665
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCC--------------------CCCC-----
Q 035501 464 GMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFP--------------------REGN----- 518 (732)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p--------------------~~g~----- 518 (732)
..+..... .......++.|++++++|+++|+| ||++||||++++..+-+ .+|+
T Consensus 771 ~~~~~~~~-e~~~~~~~r~rla~~llllSQGiP-fi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1111)
T TIGR02102 771 IKKDPKVA-ENQEEIHRRIRLGNLMVLTSQGTA-FIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYP 848 (1111)
T ss_pred cccCcccc-cchHHHHHHHHHHHHHHHHhCcHh-hhhcchhhhcccCCCccccccccccccccccccccccccccccccc
Confidence 43322111 011223567889999999999999 77999999998643300 0111
Q ss_pred ---cCcccc----ccCCCccCCccc--ccchHHHHHHHHHHHHHHhCCCCcCCc-----eEEEecc--------CCCcEE
Q 035501 519 ---EWSYEK----CRRQWNLVDADH--LRYKFMNAFGRAMNELDDKFPFLASTK-----QIVSSTN--------EEDKVI 576 (732)
Q Consensus 519 ---~~s~~~----~~~~W~~~~~~~--~~~~~l~~f~r~Li~lR~~~~aL~~g~-----~~~~~~~--------~~~~vl 576 (732)
.+||+. ++++|+...+.. .-++.+++|+|.||+|||++|+|+.+. ..+.+.+ ..+.|+
T Consensus 849 ~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~i 928 (1111)
T TIGR02102 849 YFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVV 928 (1111)
T ss_pred ccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCCCCcccccCCcEE
Confidence 455543 468998775321 112479999999999999999997752 1122211 125789
Q ss_pred EEEe-----CcEEEEEECCCCCccccEEEecCCC----CcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccccccC
Q 035501 577 VFER-----GDLVFVFNFHPENTYEGYKVGCDLP----GKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFN 647 (732)
Q Consensus 577 af~R-----~~~lvv~N~s~~~~~~~~~i~~p~~----g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (732)
+|.. +.++|++|.+.+ ...+.+|.. ..|..+++.+.. |...+.. +.+ +.
T Consensus 929 a~~~~~~~~~~~~V~~Na~~~----~~~~~lp~~~~~~~~~~v~~~~~~~---g~~~~~~-------~~~--------~~ 986 (1111)
T TIGR02102 929 AYQIVATNGDIYAVFVNADDK----ARTLTLGEDYAHLTVGEVVVDAEQA---GVTGIAE-------PKG--------VE 986 (1111)
T ss_pred EEEEecCCCCeEEEEECCCCC----CEEEECCCCcccccceEEEEccccc---Ccccccc-------ccc--------cc
Confidence 9987 358999999876 346677642 378888876443 2111100 000 00
Q ss_pred CCCcEEEEEeCcceEEEEEEec
Q 035501 648 NRPNSFRVLSPPRTSVVYYRVE 669 (732)
Q Consensus 648 ~~~~~~~v~lP~~s~~Vl~~~~ 669 (732)
. ..-.++|||+|++||....
T Consensus 987 ~--~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 987 L--TAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred c--cCCeEEEcCcEEEEEEecc
Confidence 0 1125899999999998874
No 16
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=7.8e-74 Score=652.14 Aligned_cols=463 Identities=23% Similarity=0.367 Sum_probs=351.9
Q ss_pred EEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEeCCeEeecccccccccccC
Q 035501 67 IVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDGVFIDRIPAWIKYATVD 146 (732)
Q Consensus 67 ~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~~~~~dpya~~~~~~ 146 (732)
|+|+||||+|++|+|+++ ...++|++.++|+|++++++. .+|..|+|+|. | ....+||||+.....
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~------~~G~~Y~y~v~--g-~~~v~DPya~~~~~~ 66 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPV------GPGDRYGYVLD--D-GTPVPDPASRRQPDG 66 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCC------CCCCEEEEEEe--e-eEEecCccccccccC
Confidence 589999999999999972 247899999999999999975 68999999995 3 345799999986444
Q ss_pred CCCCCCCcceeeeCCCCCCCCCCCCCCCC--CCCCceEEEEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcc
Q 035501 147 SSRFGAPYDGVYWDPPPSERYEFKYPRPP--KPKAPRIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVM 224 (732)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~ 224 (732)
+.. .|+|+++. .|.|+++.++ +.++++|||+|||+|+. .|+|+|+++ +|||||+||||+||||||+
T Consensus 67 ~~~-----~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~-~l~yl~~LGv~~i~L~Pi~ 134 (542)
T TIGR02402 67 VHG-----PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIE-KLPYLADLGITAIELMPVA 134 (542)
T ss_pred CCC-----CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHH-hhHHHHHcCCCEEEeCccc
Confidence 321 57888874 5899887643 56899999999999986 489999984 8999999999999999999
Q ss_pred cccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 035501 225 EHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGY 304 (732)
Q Consensus 225 e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~ 304 (732)
+++...+|||++.+||+|+++|||++|||+||++||++||+||||+|+||++.++.. +..+. .||.. ..
T Consensus 135 ~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~-~~~~~-------~y~~~---~~ 203 (542)
T TIGR02402 135 QFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY-LPRYA-------PYFTD---RY 203 (542)
T ss_pred cCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc-ccccC-------ccccC---CC
Confidence 998888999999999999999999999999999999999999999999999876421 22221 26643 23
Q ss_pred CCCCCCCCCCCCCH---HHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhh-----hcc---eEEEe
Q 035501 305 HKLWDSRLFNYANW---EVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNE-----YFN---ATVIA 373 (732)
Q Consensus 305 ~~~w~~~~ln~~~p---~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~-----~~~---~~~ia 373 (732)
.+.|+ +++|+++| +||++|+++++||++||||||||||++..|.... ...||+++++ .++ +++||
T Consensus 204 ~~~wg-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~---~~~~l~~~~~~~~~~~p~~~~~~li~ 279 (542)
T TIGR02402 204 STPWG-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTS---AKHILEELAREVHELAAELRPVHLIA 279 (542)
T ss_pred CCCCC-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcccc---HHHHHHHHHHHHHHHCCCCceEEEEE
Confidence 44564 57999999 9999999999999999999999999998874211 2357776653 244 89999
Q ss_pred eccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCCCC-----ccHHHHHHHhhcC-------------------
Q 035501 374 EDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEE-----WSMKEISQSLTNR------------------- 429 (732)
Q Consensus 374 E~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~-----~~~~~l~~~l~~~------------------- 429 (732)
|.+...+.++.+...++.+||+.|+..+.+.+..++.+..... .+...+...+...
T Consensus 280 E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~ 359 (542)
T TIGR02402 280 ESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPS 359 (542)
T ss_pred ecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCC
Confidence 9987777777766667889999999888888887776532111 1344555444310
Q ss_pred --cCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCC
Q 035501 430 --RYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGH 507 (732)
Q Consensus 430 --~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~ 507 (732)
..+.+.|||++|||+.. .+++.-.|.. .+ ..++.|+|.+++||+||+| |||||||+|+
T Consensus 360 ~~~~~~~~vnfl~nHD~~g--n~~~~~Rl~~--------~~---------~~~~~~la~alllt~pGiP-~Iy~GqE~g~ 419 (542)
T TIGR02402 360 GDLPPHRFVVFIQNHDQIG--NRALGERLSQ--------LL---------SPGSLKLAAALLLLSPYTP-LLFMGEEYGA 419 (542)
T ss_pred CCCCHHHEEEEccCccccc--ccchhhhhhh--------cC---------CHHHHHHHHHHHHHcCCCc-eeeccHhhcC
Confidence 02346799999999732 1111100100 00 1367899999999999999 7799999999
Q ss_pred CCcc----CC---------------------------CCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhC
Q 035501 508 PEWI----DF---------------------------PREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKF 556 (732)
Q Consensus 508 ~~~~----d~---------------------------p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~ 556 (732)
++.. |+ |.+....++++++++|+..+... +.++++|||+||+|||++
T Consensus 420 ~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~--~~~~~~~yr~Li~lRk~~ 497 (542)
T TIGR02402 420 TTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGE--HARWLAFYRDLLALRREL 497 (542)
T ss_pred CCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccc--hHHHHHHHHHHHHHhccC
Confidence 7532 21 11223455777889999775322 457999999999999999
Q ss_pred CCCcCCc-eEEE-eccCCCcEEEEEe--CcEEEEEECCCC
Q 035501 557 PFLASTK-QIVS-STNEEDKVIVFER--GDLVFVFNFHPE 592 (732)
Q Consensus 557 ~aL~~g~-~~~~-~~~~~~~vlaf~R--~~~lvv~N~s~~ 592 (732)
++|+.+. ..+. ....+++|+++.. +.++|++|+++.
T Consensus 498 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 498 PVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTS 537 (542)
T ss_pred ccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCC
Confidence 9997763 1111 1134567888876 359999999976
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4.7e-71 Score=645.66 Aligned_cols=493 Identities=17% Similarity=0.220 Sum_probs=350.4
Q ss_pred cCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCC-CcccceeeC-CCCEEEEEecCCCCCCCCCCCceEEEEEEe----CC
Q 035501 57 EFGFNREDGGIVYREWAPAAKEAQLIGDFNGWD-GSNHKMERN-EFGVWSISIPDSGGKPAIPHGSRVKFRFKH----DG 130 (732)
Q Consensus 57 ~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~-~~~~~m~~~-~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~----~g 130 (732)
.||+++.+++|+|+||||+|++|+|+++.+++. ...++|+++ ..|+|++++++. ++|.+|+|+|+. .|
T Consensus 127 ~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~------~~G~~Y~Y~V~v~~p~~G 200 (898)
T TIGR02103 127 SLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSS------WKGAYYRYEVTVYHPSTG 200 (898)
T ss_pred CCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcC------CCCCEeEEEEEEecCCCC
Confidence 499999999999999999999999998665553 457899887 689999999975 799999999985 35
Q ss_pred e--EeecccccccccccCCCCCCCCcceeeeCCCCC--CCCCCCCCC---CC--CCCCceEEEEecCCCCCCC------C
Q 035501 131 V--FIDRIPAWIKYATVDSSRFGAPYDGVYWDPPPS--ERYEFKYPR---PP--KPKAPRIYEAHVGMSSSEP------R 195 (732)
Q Consensus 131 ~--~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~---~~--~~~~~~IYE~hv~~~~~~~------~ 195 (732)
. ....+||||+.+..+.. .|+++|+... .+..|...+ ++ .+++++|||+|||+||..+ .
T Consensus 201 ~v~~~~v~DPYA~als~n~~------~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~ 274 (898)
T TIGR02103 201 KVETYLVTDPYSVSLSANSE------YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAEL 274 (898)
T ss_pred eECCeEEeCcCcceEcCCCC------CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCc
Confidence 3 35679999999876542 5778876432 456787544 32 5689999999999998532 3
Q ss_pred CCChHhHHHh------hhhHHHHCCCCEEEECCcccccc-----------------------------------------
Q 035501 196 VNSYREFADD------VLPRIRANNYNTVQLMAVMEHSY----------------------------------------- 228 (732)
Q Consensus 196 ~g~~~~~~~~------~LdyLk~LGvt~I~L~Pi~e~~~----------------------------------------- 228 (732)
.|+|++|++. .|+|||+||||||+|||||++..
T Consensus 275 rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (898)
T TIGR02103 275 RGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLK 354 (898)
T ss_pred CceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 5999999863 46666688999999999998731
Q ss_pred ---------------------cCCCCcccCccccCCCCCCC-------HHHHHHHHHHHHHCCCEEEEeecccccCCCCC
Q 035501 229 ---------------------YASFGYHVTNFFAASSRSGT-------PEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT 280 (732)
Q Consensus 229 ---------------------~~~~GY~~~~y~av~~~~Gt-------~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~ 280 (732)
..+|||+|.+||+|+++|++ +.|||+||++||++||+||||||+||++..+.
T Consensus 355 ~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~ 434 (898)
T TIGR02103 355 QNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGP 434 (898)
T ss_pred ccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCc
Confidence 14899999999999999998 37999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCcc-cCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccch
Q 035501 281 DGLNGFDVGQSSQESYFH-TGDRGYHKL-WDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMS 358 (732)
Q Consensus 281 ~~~~~~d~~~~~~~~yf~-~~~~g~~~~-w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~ 358 (732)
.....++. . .+.||+ .+..+.... .++.+++.+|++||++|+++++||++||||||||||+|.++ +.+
T Consensus 435 ~~~s~ld~--~-~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~-------~~~ 504 (898)
T TIGR02103 435 NDRSVLDK--I-VPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH-------PKA 504 (898)
T ss_pred cCcccccc--c-CcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhC-------CHH
Confidence 33233442 1 233444 333333222 34567899999999999999999999999999999999987 567
Q ss_pred hhhhHhhh-----cceEEEeeccCCCCCCCcccccCCceeccc-cc-ccccHHHHHHHhcCC--CC--------C---c-
Q 035501 359 FTGNYNEY-----FNATVIAEDVSGMPGLGSPVSMGGIGFDYR-LA-MAIPDRWIDYLKNKK--DE--------E---W- 417 (732)
Q Consensus 359 f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~-~~-~~~~~~~~~~l~~~~--~~--------~---~- 417 (732)
||++++.. ++++++||.|...............-++.. .. -.|.|.+++.+++.. +. + .
T Consensus 505 f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~ 584 (898)
T TIGR02103 505 QMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGL 584 (898)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccccccccccCcceecCc
Confidence 88776543 569999999963221110000000001100 00 135577778777632 11 0 0
Q ss_pred ----c----------------HHHHHHHhhc-----------------------------CcCcccceeccccccccccc
Q 035501 418 ----S----------------MKEISQSLTN-----------------------------RRYTEKCISYAESHDQAIVG 448 (732)
Q Consensus 418 ----~----------------~~~l~~~l~~-----------------------------~~~~~~~v~f~~nHD~~r~g 448 (732)
+ ...+...|.. ...|..+|||+++||+..
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~T-- 662 (898)
T TIGR02103 585 AVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQT-- 662 (898)
T ss_pred ccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCcc--
Confidence 0 0112111211 013557899999999765
Q ss_pred chhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCcccc----
Q 035501 449 DKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEK---- 524 (732)
Q Consensus 449 ~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~---- 524 (732)
|+|+..|+... ....+...+.++++.+++|+.+|+|+ +++|+||.+++- +..+||+.
T Consensus 663 -------L~D~l~~~~~~-----~~~~~~r~r~~~la~a~~~lsQGipF-~haG~E~lRSK~------~~~nSY~sgD~~ 723 (898)
T TIGR02103 663 -------LWDAISYKAAA-----ETPSAERVRMQAVSLSTVMLGQGIPF-FHAGSELLRSKS------FDRDSYDSGDWF 723 (898)
T ss_pred -------HHHHHHhhCCC-----CCCHHHHHHHHHHHHHHHHHhChhhH-HhcchHhhcCCC------CCCCCCcCchhh
Confidence 55665554321 12345567888999999999999995 599999999853 55566653
Q ss_pred ccCCCccCCcc-------------------------cc-----cchHHHHHHHHHHHHHHhCCCCcCCc-----eEEEec
Q 035501 525 CRRQWNLVDAD-------------------------HL-----RYKFMNAFGRAMNELDDKFPFLASTK-----QIVSST 569 (732)
Q Consensus 525 ~~~~W~~~~~~-------------------------~~-----~~~~l~~f~r~Li~lR~~~~aL~~g~-----~~~~~~ 569 (732)
++++|+...+. .. .+..+.+++|+||+||+++|.|+.+. ..+.+.
T Consensus 724 N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~ 803 (898)
T TIGR02103 724 NRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFR 803 (898)
T ss_pred heecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEe
Confidence 34677654321 00 14678999999999999999998762 223333
Q ss_pred cC----CCcEEEEEeC---------------cEEEEEECCCC
Q 035501 570 NE----EDKVIVFERG---------------DLVFVFNFHPE 592 (732)
Q Consensus 570 ~~----~~~vlaf~R~---------------~~lvv~N~s~~ 592 (732)
+. ..+||+|.-. .++||+|.+++
T Consensus 804 ~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~ 845 (898)
T TIGR02103 804 NTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPE 845 (898)
T ss_pred ccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCc
Confidence 22 2579999652 28999999987
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=6.3e-70 Score=633.50 Aligned_cols=502 Identities=17% Similarity=0.205 Sum_probs=347.4
Q ss_pred cCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCC----cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe----
Q 035501 57 EFGFNREDGGIVYREWAPAAKEAQLIGDFNGWDG----SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH---- 128 (732)
Q Consensus 57 ~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~----~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~---- 128 (732)
+||+++.+++++|+||||+|++|+|++ |+++.. ..++|+ .++|+|++++++. ++|.+|+|+|+.
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~------~~G~~Y~Y~V~v~~p~ 285 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKS------WEGCYYVYEVSVYHPS 285 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccC------CCCCeeEEEEeecccC
Confidence 799999999999999999999999998 665532 246787 6789999999975 799999999985
Q ss_pred CCe--EeecccccccccccCCCCCCCCcceeeeCCCC--CCCCCCCC---CCCC--CCCCceEEEEecCCCCCCC-----
Q 035501 129 DGV--FIDRIPAWIKYATVDSSRFGAPYDGVYWDPPP--SERYEFKY---PRPP--KPKAPRIYEAHVGMSSSEP----- 194 (732)
Q Consensus 129 ~g~--~~~~~dpya~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~---~~~~--~~~~~~IYE~hv~~~~~~~----- 194 (732)
.|. ....+||||+.+..+.. .+++.|+.. ..+..|.. ++|+ .+++++|||+|||+||.++
T Consensus 286 ~g~~~~~~v~DPYA~als~ng~------~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~ 359 (970)
T PLN02877 286 TGKVETCYANDPYARGLSADGR------RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHP 359 (970)
T ss_pred CCcccccccCCccceEEecCCC------ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCc
Confidence 233 34579999999877643 456666542 24567874 2333 4689999999999998643
Q ss_pred -CCCChHhHHHh------hhhHHHHCCCCEEEECCcccccc-------------------------------------cC
Q 035501 195 -RVNSYREFADD------VLPRIRANNYNTVQLMAVMEHSY-------------------------------------YA 230 (732)
Q Consensus 195 -~~g~~~~~~~~------~LdyLk~LGvt~I~L~Pi~e~~~-------------------------------------~~ 230 (732)
..|+|.+|++. +|+|||+||||||+|||||+++. ..
T Consensus 360 ~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~y 439 (970)
T PLN02877 360 DFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGY 439 (970)
T ss_pred CCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCC
Confidence 24999999863 36666677999999999998742 27
Q ss_pred CCCcccCccccCCCCCCC-------HHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC-CCCCCCCCCCCCCcccCCC
Q 035501 231 SFGYHVTNFFAASSRSGT-------PEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL-NGFDVGQSSQESYFHTGDR 302 (732)
Q Consensus 231 ~~GY~~~~y~av~~~~Gt-------~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~-~~~d~~~~~~~~yf~~~~~ 302 (732)
||||+|.+||+|+++|+| +.|||+||++||++||+||||||+||++..+++.. ..++. ..+.+||+.+..
T Consensus 440 NWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~--~vP~YY~r~~~~ 517 (970)
T PLN02877 440 NWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDK--IVPGYYLRRNSD 517 (970)
T ss_pred CCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccC--CCCCceEEECCC
Confidence 899999999999999998 46899999999999999999999999987654331 23332 223445554444
Q ss_pred CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhh------cceEEEeec
Q 035501 303 GYHKLW-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEY------FNATVIAED 375 (732)
Q Consensus 303 g~~~~w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~------~~~~~iaE~ 375 (732)
|....+ ++++.+.++++||++|+|+++||++||||||||||+|.++....-......++.+... ++++++||.
T Consensus 518 G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEg 597 (970)
T PLN02877 518 GFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEG 597 (970)
T ss_pred CCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeC
Confidence 543333 3566788999999999999999999999999999999987322100011222233221 458999999
Q ss_pred cCCCCC--CCc---c--cccCCceecccccccccHHHHHHHhcCCCC------Cc--------------c----------
Q 035501 376 VSGMPG--LGS---P--VSMGGIGFDYRLAMAIPDRWIDYLKNKKDE------EW--------------S---------- 418 (732)
Q Consensus 376 ~~~~~~--~~~---~--~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~------~~--------------~---------- 418 (732)
|..... -.+ . ....+.|+ -.|.|.+++.+++.... +. .
T Consensus 598 W~~g~~~~~~~~~~A~q~n~~g~gI-----g~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~ 672 (970)
T PLN02877 598 WDFGEVAKNGRGVNASQFNLAGTGI-----GSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLAT 672 (970)
T ss_pred CCCCCcccccccccccccccCCCce-----EEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhh
Confidence 962211 000 0 00111111 13667788888853200 00 0
Q ss_pred -HHHHHHHhhc------------------------------CcCcccceecccccccccccchhhHhhhccHhhhhcccc
Q 035501 419 -MKEISQSLTN------------------------------RRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSS 467 (732)
Q Consensus 419 -~~~l~~~l~~------------------------------~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~ 467 (732)
...+...|.. ...|.++|||+++||+.. |+|+..++...
T Consensus 673 ~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~T---------L~D~l~~~~~~- 742 (970)
T PLN02877 673 AKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNET---------LFDIISLKTPM- 742 (970)
T ss_pred hHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCch---------HHHHHHhhcCC-
Confidence 0111111110 013567899999999765 55555544321
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCcccc----ccCCCccCCcc-------c
Q 035501 468 LTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEK----CRRQWNLVDAD-------H 536 (732)
Q Consensus 468 ~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~----~~~~W~~~~~~-------~ 536 (732)
....+...+.++++.+++++.+|+|+ +++|+||.+++- +..+||+. ++++|+..++. .
T Consensus 743 ----~~s~~~r~r~~~la~aiv~lsQGipF-~haG~E~lRSK~------~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~ 811 (970)
T PLN02877 743 ----EISVDERCRINHLATSIIALSQGIPF-FHAGDEILRSKS------LDRDSYNSGDWFNRLDFSYDSNNWGVGLPPK 811 (970)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHhChhhH-HhcchhhhcCCC------CCCCCCcCchhhheeccccccCccccCCChh
Confidence 12345567889999999999999995 599999999853 66677764 46788863211 0
Q ss_pred cc-----------------------chHHHHHHHHHHHHHHhCCCCcCCc-----eEEEeccC----CCcEEEEEeC---
Q 035501 537 LR-----------------------YKFMNAFGRAMNELDDKFPFLASTK-----QIVSSTNE----EDKVIVFERG--- 581 (732)
Q Consensus 537 ~~-----------------------~~~l~~f~r~Li~lR~~~~aL~~g~-----~~~~~~~~----~~~vlaf~R~--- 581 (732)
.+ .....+++|.||+||+++|+|+.+. ..+.+.+. ..+||+|.-+
T Consensus 812 ~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~ 891 (970)
T PLN02877 812 EKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGH 891 (970)
T ss_pred HhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCC
Confidence 00 1456899999999999999998762 22223222 2479999661
Q ss_pred --------------cEEEEEECCCCCccccEEEecCC
Q 035501 582 --------------DLVFVFNFHPENTYEGYKVGCDL 604 (732)
Q Consensus 582 --------------~~lvv~N~s~~~~~~~~~i~~p~ 604 (732)
.++||+|-+++ ..++.+|.
T Consensus 892 ~~~~~~~~~d~~~~~ivVv~Na~~~----~~~~~~~~ 924 (970)
T PLN02877 892 EGVPGLSQLDPIYSRIVVIFNARPT----EVSFESPA 924 (970)
T ss_pred CccccccccccccCcEEEEEcCCCc----cEEEeccc
Confidence 28999999986 34555654
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=7.2e-66 Score=627.58 Aligned_cols=466 Identities=19% Similarity=0.284 Sum_probs=333.8
Q ss_pred cccCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCCc---ccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-C-
Q 035501 55 YLEFGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGS---NHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH-D- 129 (732)
Q Consensus 55 ~~~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~~---~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~-~- 129 (732)
..+|||++.++||+|+||||+|++|.|+. |+.|... .++|.+..+|+|+++|++. .+|++|+|++.. .
T Consensus 13 ~~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~------~~g~~Ygyrv~g~~~ 85 (1221)
T PRK14510 13 REPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGV------GPGARYGNRQEGPGG 85 (1221)
T ss_pred CCCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccC------CCCcEEEEEeccCCC
Confidence 45899999999999999999999999996 8877543 4678777899999999975 678999999975 2
Q ss_pred ---CeE----eecccccccccccCCCC--------C--CC--CcceeeeCCCC--CCCCCCCCCCCC--CCCCceEEEEe
Q 035501 130 ---GVF----IDRIPAWIKYATVDSSR--------F--GA--PYDGVYWDPPP--SERYEFKYPRPP--KPKAPRIYEAH 186 (732)
Q Consensus 130 ---g~~----~~~~dpya~~~~~~~~~--------~--~~--~~~~~~~~~~~--~~~~~w~~~~~~--~~~~~~IYE~h 186 (732)
|.+ ...+||||+.+.....- + +. ..++.+.+|.. ..+|+|.+.+++ .+.+.+|||+|
T Consensus 86 p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~h 165 (1221)
T PRK14510 86 PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMN 165 (1221)
T ss_pred cccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEc
Confidence 222 23589999987652210 0 00 00122222211 125889876554 45789999999
Q ss_pred cCCCCCC-C-----CCCChHhHHH-hhhhHHHHCCCCEEEECCcccccc---------cCCCCcccCccccCCCCCC--C
Q 035501 187 VGMSSSE-P-----RVNSYREFAD-DVLPRIRANNYNTVQLMAVMEHSY---------YASFGYHVTNFFAASSRSG--T 248 (732)
Q Consensus 187 v~~~~~~-~-----~~g~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~y~av~~~~G--t 248 (732)
|++|+.. + ..|+|.++.+ ++|+|||+||||+||||||+++.. .++|||++.|||+|+|+|| +
T Consensus 166 vr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~ 245 (1221)
T PRK14510 166 VRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG 245 (1221)
T ss_pred cchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc
Confidence 9999852 2 2488888872 479999999999999999998753 3679999999999999999 9
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccC--C-CCCCCCCC-CCCCCCCCHHHHHHH
Q 035501 249 PEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTG--D-RGYHKLWD-SRLFNYANWEVLRFL 324 (732)
Q Consensus 249 ~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~--~-~g~~~~w~-~~~ln~~~p~v~~~i 324 (732)
.+|||+||++||++||+||||||+|||+.++..+. .+......+..||+.. . ..+.+.|+ ++.+|+++|+|+++|
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p-~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i 324 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGP-TLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLP 324 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCC-cccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHH
Confidence 99999999999999999999999999998754331 1111112234566532 1 23444554 467899999999999
Q ss_pred HHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhh-----cc-----eEEEeeccCCCCCCCcccccCCceec
Q 035501 325 LSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEY-----FN-----ATVIAEDVSGMPGLGSPVSMGGIGFD 394 (732)
Q Consensus 325 ~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~-----~~-----~~~iaE~~~~~~~~~~~~~~~g~gFd 394 (732)
+++++||++ |||||||||+|..|... +.+||+.+... ++ +++|||.|...+... ..+ .|+
T Consensus 325 ~d~lr~Wv~-~gVDGfRfDla~~l~r~----~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~---~~g--~f~ 394 (1221)
T PRK14510 325 MDVLRSWAK-RGVDGFRLDLADELARE----PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGY---QYG--KFP 394 (1221)
T ss_pred HHHHHHHHH-hCCCEEEEechhhhccC----ccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCcc---ccC--CCC
Confidence 999999999 99999999999988432 24566554332 22 455999986432211 111 122
Q ss_pred ---ccccccccHHHHHHHhcCCCCCccHHHHHHHhhc--------CcCcccceecccccccccccchhhHhhhccHhhhh
Q 035501 395 ---YRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTN--------RRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYT 463 (732)
Q Consensus 395 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~--------~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~ 463 (732)
..|+..|.+.+++++++... .+.++...+.. .+.+..+|||++|||+.| |.|...|.
T Consensus 395 ~~~~~~N~~frd~vr~f~~g~~~---~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r---------l~dl~~y~ 462 (1221)
T PRK14510 395 QYWGEWNDPLRDIMRRFWLGDIG---MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT---------LLDLVSFN 462 (1221)
T ss_pred cceeeeccHHHHHHHHHhcCCCc---hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH---------HHHHhhhc
Confidence 34555677778888876432 34556655542 123467899999999655 55666665
Q ss_pred ccccCCC------------------CCcc-----hHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcC
Q 035501 464 GMSSLTD------------------ASPT-----IERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEW 520 (732)
Q Consensus 464 ~~~~~~~------------------~~~~-----~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~ 520 (732)
..++..+ +.++ .....++.|++.+++|+++|+| |||||||+|++ +.||++
T Consensus 463 ~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP-~Iy~GdE~g~t------q~Gn~n 535 (1221)
T PRK14510 463 HKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVP-MLYYGDEAGRS------QNGNNN 535 (1221)
T ss_pred cccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCc-EEecchhcccc------cCCCCC
Confidence 4443211 1111 2234567889999999999999 78999999987 457777
Q ss_pred ccc----cccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCc
Q 035501 521 SYE----KCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTK 563 (732)
Q Consensus 521 s~~----~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~ 563 (732)
+|+ +..++|+..+ ++|++|+|+||+|||+||+|+.|.
T Consensus 536 ~y~~~~~r~~~~W~~~~------~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 536 GYAQDNNRGTYPWGNED------EELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred CCCCCCccccCCccccc------HHHHHHHHHHHHHHHhChhhccCc
Confidence 664 4568897643 369999999999999999998874
No 20
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-64 Score=574.10 Aligned_cols=535 Identities=21% Similarity=0.321 Sum_probs=374.3
Q ss_pred cccCCcEE---eCCcEEEEEEcCCCCeEEEEeccCCC-CCc---ccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEE
Q 035501 55 YLEFGFNR---EDGGIVYREWAPAAKEAQLIGDFNGW-DGS---NHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFK 127 (732)
Q Consensus 55 ~~~lG~~~---~~~g~~f~~wAP~A~~V~L~gdfn~w-~~~---~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~ 127 (732)
+.++|+++ ...|+.|.+|+.+|++|.|+. |..- ... .+++....+.+|++.+|+. ..|+.|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l-~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~------~~g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCL-FDEAGNTEEGRLYPYDGELGAIWHLWLPGA------KPGQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEe-cCcccccccccccccCCccccEEEEEcCCC------ceeeEEEEecC
Confidence 56899997 458999999999999999996 4332 122 2677766677999999986 68999999985
Q ss_pred e-----CCeEeec----ccccccccccCCCCC-----------------------CCCcceeeeCCCCCCCCCCCCCCCC
Q 035501 128 H-----DGVFIDR----IPAWIKYATVDSSRF-----------------------GAPYDGVYWDPPPSERYEFKYPRPP 175 (732)
Q Consensus 128 ~-----~g~~~~~----~dpya~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~w~~~~~~ 175 (732)
. .|.+++. +||||+.+..+.... ..-.++++.++. +.|+.++++
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 4 3555553 899998876544110 001135555542 789877555
Q ss_pred --CCCCceEEEEecCCCC-CCCC-----CCChHhHHHhh--hhHHHHCCCCEEEECCccccc---------ccCCCCccc
Q 035501 176 --KPKAPRIYEAHVGMSS-SEPR-----VNSYREFADDV--LPRIRANNYNTVQLMAVMEHS---------YYASFGYHV 236 (732)
Q Consensus 176 --~~~~~~IYE~hv~~~~-~~~~-----~g~~~~~~~~~--LdyLk~LGvt~I~L~Pi~e~~---------~~~~~GY~~ 236 (732)
++.++||||+|||+|| .+++ .|||.++++ . |+|||+||||||+||||+++. ..++|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~-~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAE-PVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhcc-ccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 4689999999999998 4443 499999985 5 999999999999999999763 357999999
Q ss_pred CccccCCCCCCC-------HHHHHHHHHHHHHCCCEEEEeecccccCCCC----CCCCCCCCCCCCCCCCCcccCCCCCC
Q 035501 237 TNFFAASSRSGT-------PEDLKYLIDKAHSLGLRVLVDIVHSHASNNV----TDGLNGFDVGQSSQESYFHTGDRGYH 305 (732)
Q Consensus 237 ~~y~av~~~~Gt-------~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~----~~~~~~~d~~~~~~~~yf~~~~~g~~ 305 (732)
.+||||+++|.+ ..|||.||+++|++||+||||||||||+... ...+.+.| +.+||+..++|+.
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id-----~~~Yyr~~~dg~~ 319 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGID-----PNYYYRLDPDGYY 319 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCC-----cCceEEECCCCCe
Confidence 999999999965 4699999999999999999999999998642 22333333 5567777666776
Q ss_pred CCC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccc--cchhhhhH---hhhcceEEEeeccCC
Q 035501 306 KLW--DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGI--NMSFTGNY---NEYFNATVIAEDVSG 378 (732)
Q Consensus 306 ~~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~--~~~f~~~~---~~~~~~~~iaE~~~~ 378 (732)
..+ +++.+|.++|+||++|+|+|+||++||||||||||.|..+.....+. ...+.... .-.-...+|||.|.-
T Consensus 320 ~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kliAepwD~ 399 (697)
T COG1523 320 SNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKLIAEPWDI 399 (697)
T ss_pred ecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCceeeecchhh
Confidence 665 57899999999999999999999999999999999998875433211 11111110 011225588887753
Q ss_pred CCCCCcccccCCceec-----ccccccccHHHHHHHhcCCCCCccHHHHHHHhhcC--------cCcccceecccccccc
Q 035501 379 MPGLGSPVSMGGIGFD-----YRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNR--------RYTEKCISYAESHDQA 445 (732)
Q Consensus 379 ~~~~~~~~~~~g~gFd-----~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~--------~~~~~~v~f~~nHD~~ 445 (732)
.+..- ..| .|. ..|+..+.+..+.++++.. .....++.++... +.+.++|||+++||
T Consensus 400 g~~gy---qvG--~Fpd~~~~aewng~~rD~vr~F~~G~~---~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHD-- 469 (697)
T COG1523 400 GPGGY---QVG--NFPDSPRWAEWNGRFRDDVRRFWRGDA---GLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHD-- 469 (697)
T ss_pred cCCCc---ccc--cCCCccchhhhCCcccccccceeeCCC---ccHHHHHHHhhcCcchhhccCCCccceeeEEeecC--
Confidence 33110 011 121 2344445555566666543 3456666666532 34788999999999
Q ss_pred cccchhhHhhhccHhhhhccccCC----------------------CCCcchHHHHH-HHHHHHHHHHHcCCCCeEeecC
Q 035501 446 IVGDKTIAFLLMDQEMYTGMSSLT----------------------DASPTIERGIT-LHKMIHFITMALGGEGYLNFMG 502 (732)
Q Consensus 446 r~g~~~~~f~l~d~~~y~~~~~~~----------------------~~~~~~~~~~~-~~kla~~ll~t~pG~P~liy~G 502 (732)
+|+|.|...|...+... ...|.+..+.. ..+...+.++..+|+| |+-+|
T Consensus 470 -------gfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~p-ml~~g 541 (697)
T COG1523 470 -------GFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTP-MLLAG 541 (697)
T ss_pred -------CCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCc-ccccc
Confidence 78899988888776542 12233332332 3344455688999999 99999
Q ss_pred CCCCCCCccCCCCCCCcCcccc----ccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCce-----------EE-
Q 035501 503 NEFGHPEWIDFPREGNEWSYEK----CRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQ-----------IV- 566 (732)
Q Consensus 503 ~E~G~~~~~d~p~~g~~~s~~~----~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~-----------~~- 566 (732)
||+|++. .||+++||. +.++|+. + .++.+++|.+.||+||++||+|+.... |.
T Consensus 542 De~~rtq------~gnnNsYcqdn~inwlDW~~--~---~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~ 610 (697)
T COG1523 542 DEFGRTQ------YGNNNAYCQDNEINWLDWST--E---ANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLN 610 (697)
T ss_pred ccccccc------ccccccccCCcccceeccCc--c---ccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceec
Confidence 9999984 499999986 3589983 1 246899999999999999999977311 11
Q ss_pred ---------EeccCCCcEEEEEe-C---cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCcccccc
Q 035501 567 ---------SSTNEEDKVIVFER-G---DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFT 633 (732)
Q Consensus 567 ---------~~~~~~~~vlaf~R-~---~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~ 633 (732)
.+.+.....+++.. + +++|++|.+.+ ...++++... ++|..++++.... +.
T Consensus 611 ~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~~--~~~~~lp~~~-~~~~~~~~~~~~~--~~----------- 674 (697)
T COG1523 611 WNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATAE--PVEFELPEDE-GKWAGLVDTSTPP--GF----------- 674 (697)
T ss_pred cCCeeechhcccCCCCceEEEEecCCCccEEEEecCCcc--ccceeccccc-CcceeeecccCCC--Cc-----------
Confidence 01122234555555 2 69999997765 2234444332 6687777643321 10
Q ss_pred CCCCCCCccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 634 SPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
....+.++++|+.||.+.
T Consensus 675 -----------------~~~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 675 -----------------DIREVSLPGRSVLVLTRR 692 (697)
T ss_pred -----------------ccceeecCCcEEEEEeec
Confidence 011588999999999754
No 21
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.5e-58 Score=531.86 Aligned_cols=459 Identities=15% Similarity=0.193 Sum_probs=311.8
Q ss_pred eCCcEEEEEEcCC---CCeEEEEeccCCCCCcccceeeCC----CCEEEEEecCCCCCCCCCCCceEEEEEEeCCeEeec
Q 035501 63 EDGGIVYREWAPA---AKEAQLIGDFNGWDGSNHKMERNE----FGVWSISIPDSGGKPAIPHGSRVKFRFKHDGVFIDR 135 (732)
Q Consensus 63 ~~~g~~f~~wAP~---A~~V~L~gdfn~w~~~~~~m~~~~----~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~~~~ 135 (732)
..+.+++|+..+. .++|.|.....+ .....+|++.. ..+|+++|+-... ..-..|.|++..+++...
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~-~~~~~~m~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~F~l~~~~~~~~- 90 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDN-EEYLLPMEKQRSQPQVTAWRASLPLNSG----QPRRRYSFKLLWHDRQRW- 90 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCC-CEEEEEeEEeecCCCceEEEEEEEcCCC----CceEEEEEEEEeCCEEEE-
Confidence 5667899998874 458888754333 22457887632 3579999984210 123567777765444321
Q ss_pred ccccccccccCCCCCCCCcceee-eCCCCCCCCCCCC--CCCCCCCCceEEEEecCCCCC-CC-----C-----------
Q 035501 136 IPAWIKYATVDSSRFGAPYDGVY-WDPPPSERYEFKY--PRPPKPKAPRIYEAHVGMSSS-EP-----R----------- 195 (732)
Q Consensus 136 ~dpya~~~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~--~~~~~~~~~~IYE~hv~~~~~-~~-----~----------- 195 (732)
.... |+. ..++....|.+.. ..|.+.++.||||+++..|-. ++ .
T Consensus 91 -------~~~~---------g~~~~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~ 154 (598)
T PRK10785 91 -------FTPQ---------GFSRRPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQE 154 (598)
T ss_pred -------EcCC---------ceeeccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCc
Confidence 0000 000 0010001122211 233356899999999966621 10 0
Q ss_pred --------------------CCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHH
Q 035501 196 --------------------VNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYL 255 (732)
Q Consensus 196 --------------------~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~L 255 (732)
-|+++||+ ++|||||+||||+|||+||++++ ++|||++.||++|||+|||.++||+|
T Consensus 155 ~~~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp~~Gt~~df~~L 231 (598)
T PRK10785 155 IILRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDPQLGGDAALLRL 231 (598)
T ss_pred ccccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCC--CCCCcCcccccccCcccCCHHHHHHH
Confidence 18999998 58999999999999999999865 67999999999999999999999999
Q ss_pred HHHHHHCCCEEEEeecccccCCCCCCCCC-------CCCCCCCCCCCCcccCCCCCCCCCC----CCCCCCCCHHHHHHH
Q 035501 256 IDKAHSLGLRVLVDIVHSHASNNVTDGLN-------GFDVGQSSQESYFHTGDRGYHKLWD----SRLFNYANWEVLRFL 324 (732)
Q Consensus 256 V~~~H~~GI~VIlDvV~NH~~~~~~~~~~-------~~d~~~~~~~~yf~~~~~g~~~~w~----~~~ln~~~p~v~~~i 324 (732)
|++||++||+||||+|+||++.+|.+... .+....++...||.....+....|. .++||++||+|+++|
T Consensus 232 v~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l 311 (598)
T PRK10785 232 RHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEI 311 (598)
T ss_pred HHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHH
Confidence 99999999999999999999998753210 0111123344566544444444453 589999999999999
Q ss_pred HH----HHHHHHHh-cCceEEeecCcccccccc-ccccchhhhhHhhh-----cceEEEeeccCCCCCCCcccccCCcee
Q 035501 325 LS----NLRWWIEE-FKFDGFRFDGVTSMLYHH-HGINMSFTGNYNEY-----FNATVIAEDVSGMPGLGSPVSMGGIGF 393 (732)
Q Consensus 325 ~~----~l~~Wl~e-~giDGfR~D~~~~~~~~~-~g~~~~f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~~~~g~gF 393 (732)
++ +++||+++ |||||||+|+|..+.... .-.+.+||+++++. +++++|||.|.+..... .+.+|
T Consensus 312 ~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l-----~~~~~ 386 (598)
T PRK10785 312 YRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWL-----QADVE 386 (598)
T ss_pred HhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhc-----cCccc
Confidence 95 89999997 999999999997663210 00135788887654 45999999886432211 12234
Q ss_pred cccccc-cccHHHHHHHhcCCC----CCccHHHHHHHhhc--CcCcc----cceecccccccccccchhhHhhhccHhhh
Q 035501 394 DYRLAM-AIPDRWIDYLKNKKD----EEWSMKEISQSLTN--RRYTE----KCISYAESHDQAIVGDKTIAFLLMDQEMY 462 (732)
Q Consensus 394 d~~~~~-~~~~~~~~~l~~~~~----~~~~~~~l~~~l~~--~~~~~----~~v~f~~nHD~~r~g~~~~~f~l~d~~~y 462 (732)
|..+++ .|...++.++.+... ...+..++...+.. ..++. ..+||++|||++|+.... +
T Consensus 387 d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~------~---- 456 (598)
T PRK10785 387 DAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLL------G---- 456 (598)
T ss_pred cccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhh------C----
Confidence 444442 455556666653211 11234444443331 11221 356899999999864211 0
Q ss_pred hccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHH
Q 035501 463 TGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFM 542 (732)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l 542 (732)
...++.|+|++++||+||+| +||||+|+|+. |...++++.+|+|+..+.+ +++
T Consensus 457 --------------~~~~~~kla~~ll~t~pGiP-~IYYGdE~G~~--------g~~dp~~R~~m~W~~~~~~----~~l 509 (598)
T PRK10785 457 --------------GDKARMPLALVWLFTWPGVP-CIYYGDEVGLD--------GGNDPFCRKPFPWDEAKQD----GAL 509 (598)
T ss_pred --------------CCHHHHHHHHHHHHhCCCCc-EEEeeeecccc--------CCCCCCccCCcCCCcccCc----hHH
Confidence 02467899999999999999 66999999996 5566777888999875432 479
Q ss_pred HHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe----CcEEEEEECC
Q 035501 543 NAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFER----GDLVFVFNFH 590 (732)
Q Consensus 543 ~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R----~~~lvv~N~s 590 (732)
++|+|+|++||+++|+|+.|.......+ +.|++|.| +.++||+|++
T Consensus 510 ~~~~r~Li~lRk~~~aL~~G~~~~l~~~--~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 510 LALYQRMIALRKKSQALRRGGCQVLYAE--GNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred HHHHHHHHHHHhhCcccccCcEEEEEeC--CCEEEEEEECCCCEEEEEEECC
Confidence 9999999999999999999965544433 45999999 3599999998
No 22
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=9.1e-56 Score=506.69 Aligned_cols=444 Identities=16% Similarity=0.226 Sum_probs=278.3
Q ss_pred CCCCceEEEEecCCCCCC--CCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHH
Q 035501 176 KPKAPRIYEAHVGMSSSE--PRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLK 253 (732)
Q Consensus 176 ~~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk 253 (732)
+.++++|||++|++|... .+.|+|+|++ ++|||||+||||+||||||++.+. .+|||++.||++|+|+|||.++||
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~ 79 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFK 79 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHH
Confidence 357899999999999754 3579999998 589999999999999999998653 479999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCC-------------CCCCCC------------
Q 035501 254 YLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDR-------------GYHKLW------------ 308 (732)
Q Consensus 254 ~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~-------------g~~~~w------------ 308 (732)
+||++||++||+||||+|+||++.++++.........+....||..... .....|
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 159 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWH 159 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEe
Confidence 9999999999999999999999998753211100011122233321000 001112
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccc----cc--cchhhhhHhhh-----cceEEEe
Q 035501 309 ----DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHH----GI--NMSFTGNYNEY-----FNATVIA 373 (732)
Q Consensus 309 ----~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~----g~--~~~f~~~~~~~-----~~~~~ia 373 (732)
+.++||++||+||++|++++++|++ +||||||||++++|..... .. ..+||+++++. +++++||
T Consensus 160 ~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~ia 238 (539)
T TIGR02456 160 RFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLA 238 (539)
T ss_pred cccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEE
Confidence 2579999999999999999999998 8999999999998743211 01 24688877543 5699999
Q ss_pred eccCCCCCCCccccc-CCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhc---CcCcccceecccccccccccc
Q 035501 374 EDVSGMPGLGSPVSM-GGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTN---RRYTEKCISYAESHDQAIVGD 449 (732)
Q Consensus 374 E~~~~~~~~~~~~~~-~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~---~~~~~~~v~f~~nHD~~r~g~ 449 (732)
|.+.....+...... ...+++..+++.+...+...+. ......+...+.. .......++|++|||+.++.-
T Consensus 239 E~~~~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~-----~~~~~~l~~~l~~~~~~~~~~~~~~fl~nHD~~~~~~ 313 (539)
T TIGR02456 239 EANQWPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALR-----REDRSPIIDILKETPDIPDSCQWCIFLRNHDELTLEM 313 (539)
T ss_pred EeCCCHHHHHHhhCCCCCCeeeeEEChhhhhhhhcccc-----cCCHHHHHHHHHHhhhccCCCceeeecCCCCccCccc
Confidence 974321111111111 1113444443332221111111 1123333333321 111223467999999976421
Q ss_pred hh---hHhhhccHhhhhccccCCCC-------CcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCc
Q 035501 450 KT---IAFLLMDQEMYTGMSSLTDA-------SPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNE 519 (732)
Q Consensus 450 ~~---~~f~l~d~~~y~~~~~~~~~-------~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~ 519 (732)
-+ ..+ |... +...+..... ........++.|+|++++||+||+| +||||+|+|+..-.. +..
T Consensus 314 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P-~IYYG~EiGm~~~~~----~~~ 385 (539)
T TIGR02456 314 VTDEERDF-MYAA--YAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSP-ILYYGDEIGMGDNIW----LGD 385 (539)
T ss_pred cChhhhhh-hhhh--ccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCce-EEEechhhcCcCCCc----cCC
Confidence 00 000 0000 0000000000 0001112457899999999999999 679999999963100 111
Q ss_pred CccccccCCCccCCcc------------------------------cccchHHHHHHHHHHHHHHhCCCCcCCceEEEec
Q 035501 520 WSYEKCRRQWNLVDAD------------------------------HLRYKFMNAFGRAMNELDDKFPFLASTKQIVSST 569 (732)
Q Consensus 520 ~s~~~~~~~W~~~~~~------------------------------~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~ 569 (732)
...++.+|+|+..... .....++++|||+||+||+++|+|+.|.......
T Consensus 386 ~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~ 465 (539)
T TIGR02456 386 RNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPT 465 (539)
T ss_pred CcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEec
Confidence 1233556888753210 0012469999999999999999999986544433
Q ss_pred cCCCcEEEEEeC----cEEEEEECCCCCccccEEEecCC--CCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccc
Q 035501 570 NEEDKVIVFERG----DLVFVFNFHPENTYEGYKVGCDL--PGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAE 643 (732)
Q Consensus 570 ~~~~~vlaf~R~----~~lvv~N~s~~~~~~~~~i~~p~--~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 643 (732)
+ +++|++|.|. .++||+|++.++ ..+.+.++. ++.+.++++++... +
T Consensus 466 ~-~~~v~~f~R~~~~~~vlVv~N~s~~~--~~v~l~~~~~~~~~~~dl~~~~~~~-----~------------------- 518 (539)
T TIGR02456 466 G-NRRVLAFLREYEGERVLCVFNFSRNP--QAVELDLSEFAGRVPVELIGGAPFP-----P------------------- 518 (539)
T ss_pred C-CCCEEEEEEEcCCcEEEEEEeCCCCC--EEeeccccccccCcceecccCCccc-----c-------------------
Confidence 2 3469999993 599999999762 234444432 12345555322100 0
Q ss_pred cccCCCCcEEEEEeCcceEEEEE
Q 035501 644 TNFNNRPNSFRVLSPPRTSVVYY 666 (732)
Q Consensus 644 ~~~~~~~~~~~v~lP~~s~~Vl~ 666 (732)
...+.++|+|||.++++|.
T Consensus 519 ----~~~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 519 ----VGGDGYLLTLGPHGFYWFR 537 (539)
T ss_pred ----ccCCcceEEECCceEEEEE
Confidence 0012378999999999986
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.1e-54 Score=493.68 Aligned_cols=407 Identities=16% Similarity=0.207 Sum_probs=268.1
Q ss_pred CCCCCceEEEEecCCCCC--CCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHH
Q 035501 175 PKPKAPRIYEAHVGMSSS--EPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDL 252 (732)
Q Consensus 175 ~~~~~~~IYE~hv~~~~~--~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~df 252 (732)
.+.++.||||+++++|.. ..+.|+|+|++ ++||||++||||+|||+||++.+. ..|||++.||++|+|+|||.+||
T Consensus 6 ~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 6 HWWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred hhhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcccCCHHHH
Confidence 356789999999999964 34579999998 589999999999999999997653 46999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCccc-C------CCCCC-----CC--C----------
Q 035501 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHT-G------DRGYH-----KL--W---------- 308 (732)
Q Consensus 253 k~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~-~------~~g~~-----~~--w---------- 308 (732)
++||++||++||+||||+|+||++.+|++.....+ ...+...||.. + ...+. .. |
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~-~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~ 162 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALN-KESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLH 162 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcC-CCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEee
Confidence 99999999999999999999999998755322211 11122223311 0 00000 00 1
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccc----------------cccchhhhhHhhhc-
Q 035501 309 ----DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHH----------------GINMSFTGNYNEYF- 367 (732)
Q Consensus 309 ----~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~----------------g~~~~f~~~~~~~~- 367 (732)
+.++||++||+|+++|+++++||++ +||||||||+|++|..... ....+|++++++..
T Consensus 163 ~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (551)
T PRK10933 163 LFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVF 241 (551)
T ss_pred cccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhh
Confidence 2579999999999999999999996 8999999999999854210 00136777776432
Q ss_pred ---ceEEEeeccCCCCCCCccc-ccCCceecccccccccHHHHHHHhcCC--CCCccHHHHHHHhhc---Cc-Cccccee
Q 035501 368 ---NATVIAEDVSGMPGLGSPV-SMGGIGFDYRLAMAIPDRWIDYLKNKK--DEEWSMKEISQSLTN---RR-YTEKCIS 437 (732)
Q Consensus 368 ---~~~~iaE~~~~~~~~~~~~-~~~g~gFd~~~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~l~~---~~-~~~~~v~ 437 (732)
.+++|||.+...+..+... ...+..+++.++ |.....+++.+.. ...+....+...+.. .. ......+
T Consensus 242 ~~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fn--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (551)
T PRK10933 242 TPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN--FHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNAL 319 (551)
T ss_pred cccCcEEEEeecCCCHHHHHHhhcccCCeeeeEec--HHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccCeecc
Confidence 3689999875332221111 111212232222 2222233333221 112344444333321 11 1123346
Q ss_pred cccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCC--
Q 035501 438 YAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPR-- 515 (732)
Q Consensus 438 f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~-- 515 (732)
|++|||++|+.++.. +. .....+..|++++++||+||+| +||||+|+||.+- .+++
T Consensus 320 fl~NHD~~R~~sr~g-----~~---------------~~~~~~~aklla~ll~tlpG~P-~IYyGeEiGm~~~-~~~~~~ 377 (551)
T PRK10933 320 FWCNHDQPRIVSRFG-----DE---------------GEYRVPAAKMLAMVLHGMQGTP-YIYQGEEIGMTNP-HFTRIT 377 (551)
T ss_pred ccCCCCcccHHHHcC-----Cc---------------hhHHHHHHHHHHHHHHhCCCce-EEEeecccCCCCC-CCCCHH
Confidence 899999998643321 10 0112345788999999999999 5699999999751 1100
Q ss_pred ----------------CCC------------cCccccccCCCccCCccc-----------------------ccchHHHH
Q 035501 516 ----------------EGN------------EWSYEKCRRQWNLVDADH-----------------------LRYKFMNA 544 (732)
Q Consensus 516 ----------------~g~------------~~s~~~~~~~W~~~~~~~-----------------------~~~~~l~~ 544 (732)
.|. ....++.+|+|+...... ....++++
T Consensus 378 ~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~ 457 (551)
T PRK10933 378 DYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFY 457 (551)
T ss_pred HhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHH
Confidence 010 011146779997643100 01246999
Q ss_pred HHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEeC----cEEEEEECCCCCccccEEEecC-CCCcEEEEecC
Q 035501 545 FGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERG----DLVFVFNFHPENTYEGYKVGCD-LPGKYRVALDS 614 (732)
Q Consensus 545 f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R~----~~lvv~N~s~~~~~~~~~i~~p-~~g~~~~~l~s 614 (732)
|||+||+||+++|+|..|....... .+..|++|.|. .++||+|++... ..+.++ ..+.|++++++
T Consensus 458 ~yk~Li~lRk~~~aL~~G~~~~~~~-~~~~v~af~R~~~~~~~lvv~N~s~~~----~~~~~~~~~~~~~~~l~~ 527 (551)
T PRK10933 458 TYQKLIALRKQEPVLTWGDYQDLLP-NHPSLWCYRREWQGQTLLVIANLSREP----QPWQPGQMRGNWQLLMHN 527 (551)
T ss_pred HHHHHHHHhhcChhhccceeEEecc-CCCcEEEEEEEcCCcEEEEEEECCCCC----eeeecCcccCCceEEeec
Confidence 9999999999999999996443322 33469999993 599999999762 234443 24678888764
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.3e-54 Score=496.10 Aligned_cols=406 Identities=16% Similarity=0.191 Sum_probs=267.3
Q ss_pred CCCceEEEEecCCCCCC--CCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHH
Q 035501 177 PKAPRIYEAHVGMSSSE--PRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKY 254 (732)
Q Consensus 177 ~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~ 254 (732)
.+..+|||+|++.|... .+.|+|+|++ ++||||++||||+|||+||++.+. ..+||++.||++|+|+|||.++|++
T Consensus 2 ~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~ 79 (543)
T TIGR02403 2 WQKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFEE 79 (543)
T ss_pred cccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHHH
Confidence 56789999999999653 4579999998 589999999999999999998653 4579999999999999999999999
Q ss_pred HHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccC-CCC-----CC-----CCC---------------
Q 035501 255 LIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTG-DRG-----YH-----KLW--------------- 308 (732)
Q Consensus 255 LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~-~~g-----~~-----~~w--------------- 308 (732)
||++||++||+||||+|+||++.+|.+....... .++...||... ..+ +. ..|
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~-~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAG-DSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcC-CCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccC
Confidence 9999999999999999999999887542211111 12222333111 000 00 011
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccccccccc----------------ccchhhhhHhhh----c
Q 035501 309 -DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHG----------------INMSFTGNYNEY----F 367 (732)
Q Consensus 309 -~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g----------------~~~~f~~~~~~~----~ 367 (732)
+.++||++||+|+++|+++++||++ +||||||||+|++|...... ...+||+++++. +
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDN 237 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccC
Confidence 2579999999999999999999998 69999999999998532100 024688887653 4
Q ss_pred ceEEEeeccCCCCCCCcc-cccCCceecccccccccHHHHHHHhcCC--CCCccHHHHHHHhhcC--c---Ccccceecc
Q 035501 368 NATVIAEDVSGMPGLGSP-VSMGGIGFDYRLAMAIPDRWIDYLKNKK--DEEWSMKEISQSLTNR--R---YTEKCISYA 439 (732)
Q Consensus 368 ~~~~iaE~~~~~~~~~~~-~~~~g~gFd~~~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~l~~~--~---~~~~~v~f~ 439 (732)
++++|||.+...+..... ....+..||..++ |.....++..+.. ...+....+...+... . .....++|+
T Consensus 238 ~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~fl 315 (543)
T TIGR02403 238 DSVTVGEMSSTTIENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNALFW 315 (543)
T ss_pred CeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEC--hhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceeeec
Confidence 689999998643322111 1122234554433 2222223332211 1123344444433210 1 112335699
Q ss_pred cccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCcc--CCC---
Q 035501 440 ESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWI--DFP--- 514 (732)
Q Consensus 440 ~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~--d~p--- 514 (732)
+|||++|+..+.. +. .....+..|++++++||+||+| +||||||+||.... ..+
T Consensus 316 ~NHD~~R~~s~~g-----~~---------------~~~~~~~~k~~a~ll~tlpG~P-~IYYGdEiGm~~~~~~~~~~~~ 374 (543)
T TIGR02403 316 NNHDQPRAVSRFG-----DD---------------GEYRVESAKMLAAAIHLLRGTP-YIYQGEEIGMTNPKFTNIEDYR 374 (543)
T ss_pred CCCChhhHHHhcC-----Cc---------------hhhHHHHHHHHHHHHHHCCCCe-EEEeccccCCCCCCCCCHHHhc
Confidence 9999998643221 10 0011345788889999999999 66999999997421 000
Q ss_pred -----------C-CCC------------cCccccccCCCccCCcc-----------------------cccchHHHHHHH
Q 035501 515 -----------R-EGN------------EWSYEKCRRQWNLVDAD-----------------------HLRYKFMNAFGR 547 (732)
Q Consensus 515 -----------~-~g~------------~~s~~~~~~~W~~~~~~-----------------------~~~~~~l~~f~r 547 (732)
. .|. ....++.+|+|+..... .....++++|||
T Consensus 375 D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr 454 (543)
T TIGR02403 375 DVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQ 454 (543)
T ss_pred CHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHH
Confidence 0 010 01134667999764210 001257999999
Q ss_pred HHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe----CcEEEEEECCCCCccccEEEecCC-CCcEEEEecC
Q 035501 548 AMNELDDKFPFLASTKQIVSSTNEEDKVIVFER----GDLVFVFNFHPENTYEGYKVGCDL-PGKYRVALDS 614 (732)
Q Consensus 548 ~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R----~~~lvv~N~s~~~~~~~~~i~~p~-~g~~~~~l~s 614 (732)
+||+||+++|+|..|....... .+..|++|.| +.++||+|++.+ . ..+.+|. .+.++.++++
T Consensus 455 ~Li~lRk~~~aL~~G~~~~~~~-~~~~v~a~~R~~~~~~~lVv~N~s~~--~--~~~~l~~~~~~~~~~~~~ 521 (543)
T TIGR02403 455 KLIALRKSEPVITDGDYQFLLP-DDPSVWAYTRTYKNQKLLVINNFYGE--E--KTIELPLDLLSGKILLSN 521 (543)
T ss_pred HHHHHHhhcccccCccEEEeec-CCCcEEEEEEEcCCcEEEEEEECCCC--C--eEeeCCccCcCceEEEec
Confidence 9999999999999996444333 2346999999 359999999976 2 2344442 2335556554
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=4.9e-52 Score=478.22 Aligned_cols=364 Identities=16% Similarity=0.224 Sum_probs=248.1
Q ss_pred CCCCCCceEEEEecCCCCCCC------------C--------CCChHhHHHhhhhHHHHCCCCEEEECCccccc------
Q 035501 174 PPKPKAPRIYEAHVGMSSSEP------------R--------VNSYREFADDVLPRIRANNYNTVQLMAVMEHS------ 227 (732)
Q Consensus 174 ~~~~~~~~IYE~hv~~~~~~~------------~--------~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~------ 227 (732)
+..+++.+||++.+..|...+ + -|+|+|++ ++|||||+||||+|||+||+++.
T Consensus 184 ~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 184 PFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred ChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccccc
Confidence 335678899999997773211 1 18999998 58999999999999999999862
Q ss_pred -------ccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCC-----CCCCCC-----CC--
Q 035501 228 -------YYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT-----DGLNGF-----DV-- 288 (732)
Q Consensus 228 -------~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~-----~~~~~~-----d~-- 288 (732)
.+++|||++.||+.++++|||.+|||+||++||++||+||||+|+||++..+. .++... +.
T Consensus 263 g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~ 342 (683)
T PRK09505 263 GTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKK 342 (683)
T ss_pred ccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccc
Confidence 35789999999999999999999999999999999999999999999995321 111110 00
Q ss_pred -CCCCCCCC--------------ccc-CCCCCCCCC-------------------------CCCCCCCC-----------
Q 035501 289 -GQSSQESY--------------FHT-GDRGYHKLW-------------------------DSRLFNYA----------- 316 (732)
Q Consensus 289 -~~~~~~~y--------------f~~-~~~g~~~~w-------------------------~~~~ln~~----------- 316 (732)
....+..| +.. +...+...| ..++||++
T Consensus 343 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~ 422 (683)
T PRK09505 343 TLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFY 422 (683)
T ss_pred ccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhh
Confidence 00000011 100 011111111 23556665
Q ss_pred ------------CHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhhc-----------------
Q 035501 317 ------------NWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF----------------- 367 (732)
Q Consensus 317 ------------~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~----------------- 367 (732)
||+|+++|++++++|+++|||||||+|+|++| +.+||++++...
T Consensus 423 ~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV-------~~~FW~~~~~~~~~~l~~~k~~~~d~~~~ 495 (683)
T PRK09505 423 ANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHV-------ELPAWQQLKQEASAALAEWKKANPDKALD 495 (683)
T ss_pred hcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhC-------CHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 56999999999999999999999999999998 567887764321
Q ss_pred --ceEEEeeccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccc
Q 035501 368 --NATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQA 445 (732)
Q Consensus 368 --~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~ 445 (732)
.+++|||.|...+...... +.+||..+++.+.....+..... ..+..+...+.........++|++|||+.
T Consensus 496 ~~~~~~vGEvw~~~~~~~~y~---~~~fDsv~NF~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~l~FLdNHDt~ 568 (683)
T PRK09505 496 DAPFWMTGEAWGHGVMKSDYY---RHGFDAMINFDYQEQAAKAVDCL----AQMDPTYQQMAEKLQDFNVLSYLSSHDTR 568 (683)
T ss_pred cCCeEEEEEecCCchhhHHHH---hhcCccccCchHHHHHHHHHHHH----HHHHHHHHHHhhhcCccceeecccCCChh
Confidence 3799999996443222111 23566666655443333222210 11233333332211233567899999999
Q ss_pred cccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCcc--c
Q 035501 446 IVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSY--E 523 (732)
Q Consensus 446 r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~--~ 523 (732)
|+.++.. ...++|+|++++||+||+| +||||+|+|++.- ..+ ..+. +
T Consensus 569 Rf~s~~~-------------------------~~~~~klAaall~tlpGiP-~IYYGdEiGm~gg----~~g-~DP~~~~ 617 (683)
T PRK09505 569 LFFEGGQ-------------------------SYAKQRRAAELLLLAPGAV-QIYYGDESARPFG----PTG-SDPLQGT 617 (683)
T ss_pred hhhhhcC-------------------------chHHHHHHHHHHHhCCCCc-EEEechhhCccCC----CCC-CCCcccc
Confidence 8643210 1256789999999999999 6699999999621 001 1222 5
Q ss_pred cccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe----CcEEEEEEC
Q 035501 524 KCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFER----GDLVFVFNF 589 (732)
Q Consensus 524 ~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R----~~~lvv~N~ 589 (732)
+..|+|+....+ ..+|++|+|+|++||++||+|+.|...... .+.+++|.| +.++||+|-
T Consensus 618 R~~M~W~~~~~~---~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~---~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 618 RSDMNWQEVSGK---SAALLAHWQKLGQFRARHPAIGAGKQTTLS---LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred cccCCccccccc---hHHHHHHHHHHHHHHhhCHHhhCCceEEec---cCCEEEEEEEeCCCEEEEEEeC
Confidence 667899853322 247999999999999999999999654432 346999999 358888884
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.9e-50 Score=457.16 Aligned_cols=373 Identities=18% Similarity=0.218 Sum_probs=251.7
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccc-cCCCCcccCccc---------cCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSY-YASFGYHVTNFF---------AASSRSGTPEDLKYLIDKAHSLGLRVL 267 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~-~~~~GY~~~~y~---------av~~~~Gt~~dfk~LV~~~H~~GI~VI 267 (732)
+|++|+ ++||||++||||+|||+||++++. ..+|||++.||| .|+|+|||.+|||+||++||++||+||
T Consensus 20 ~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 20 LWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 578898 589999999999999999999763 457999999999 799999999999999999999999999
Q ss_pred EeecccccCCCCC-CCCC-----------------------CCCCC--CCCC----CCCcccCCC---------------
Q 035501 268 VDIVHSHASNNVT-DGLN-----------------------GFDVG--QSSQ----ESYFHTGDR--------------- 302 (732)
Q Consensus 268 lDvV~NH~~~~~~-~~~~-----------------------~~d~~--~~~~----~~yf~~~~~--------------- 302 (732)
||+|+||++.... .++. .|... .+.. ..|++....
T Consensus 99 ~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (479)
T PRK09441 99 ADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIV 178 (479)
T ss_pred EEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEec
Confidence 9999999996432 1110 01000 0000 012221110
Q ss_pred CCCCCCC--------------CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhh--
Q 035501 303 GYHKLWD--------------SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEY-- 366 (732)
Q Consensus 303 g~~~~w~--------------~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~-- 366 (732)
+....|. .++||++||+|+++|++++++|++++||||||+|+|++| +..||+++...
T Consensus 179 ~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v-------~~~f~~~~~~~~~ 251 (479)
T PRK09441 179 GDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI-------DAWFIKEWIEHVR 251 (479)
T ss_pred CCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC-------CHHHHHHHHHHHH
Confidence 0112231 579999999999999999999999999999999999988 45777766543
Q ss_pred ----cceEEEeeccCCCCCCCccc-cc---CCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceec
Q 035501 367 ----FNATVIAEDVSGMPGLGSPV-SM---GGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISY 438 (732)
Q Consensus 367 ----~~~~~iaE~~~~~~~~~~~~-~~---~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f 438 (732)
+++++|||.|.+.+.....+ .. ....||+.++.. +.+.+... ....+.++.........+...++|
T Consensus 252 ~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~----l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~F 325 (479)
T PRK09441 252 EVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYN----FHEASKQG--RDYDMRNIFDGTLVEADPFHAVTF 325 (479)
T ss_pred HhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHH----HHHHHhcC--CccchHhhhCcchhhcCcccceee
Confidence 35899999997665432222 11 224678776543 33333321 123344443222222356678999
Q ss_pred ccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcC-CCCeEeecCCCCCCCCccCCCCCC
Q 035501 439 AESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALG-GEGYLNFMGNEFGHPEWIDFPREG 517 (732)
Q Consensus 439 ~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~p-G~P~liy~G~E~G~~~~~d~p~~g 517 (732)
++|||++|+.... + .. .....++|.+++||+| |+| +||||+|+|+. |
T Consensus 326 ldNHD~~R~~~~~------~--------------~~---~~~~~~lA~a~llT~p~GiP-~IYYGdE~g~~--------g 373 (479)
T PRK09441 326 VDNHDTQPGQALE------S--------------PV---EPWFKPLAYALILLREEGYP-CVFYGDYYGAS--------G 373 (479)
T ss_pred eccccCCCccccc------c--------------cc---cccchHHHHHHHHhCCCCce-eeEeccccCCC--------C
Confidence 9999999964311 0 00 0112479999999999 999 66999999984 1
Q ss_pred CcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe------CcEEEEEECCC
Q 035501 518 NEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFER------GDLVFVFNFHP 591 (732)
Q Consensus 518 ~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R------~~~lvv~N~s~ 591 (732)
... + ..+.+++|+|++||++++ .|...... .++.+++|.| ..++||+|.+.
T Consensus 374 ~~~------------~------~~l~~~i~~Li~lRk~~~---~G~~~~~~--~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 374 YYI------------D------MPFKEKLDKLLLARKNFA---YGEQTDYF--DHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred Ccc------------c------chHHHHHHHHHHHHHHhC---CCCeeEee--cCCCEEEEEEecCCCCccEEEEEECCC
Confidence 110 1 248999999999999854 56544433 3356999999 24899998876
Q ss_pred CCccccEEEecC-CCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccccccCCCCcEEEEEeCcceEEEEE
Q 035501 592 ENTYEGYKVGCD-LPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYY 666 (732)
Q Consensus 592 ~~~~~~~~i~~p-~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~ 666 (732)
. +...+.++.. ..+.|++++...... + + ....+.+.++||++|+.||.
T Consensus 431 ~-~~~~~~~~~~~~~~~~~d~~~~~~~~----------~---~-------------~~~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 431 A-GEKTMEVGENYAGKTWRDYTGNRQET----------V---T-------------IDEDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred C-CcEEEEeCccCCCCEeEhhhCCCCCe----------E---E-------------ECCCCeEEEEECCceEEEeC
Confidence 5 2223445432 245577776422110 0 0 01235689999999999983
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=6.9e-44 Score=393.25 Aligned_cols=316 Identities=17% Similarity=0.203 Sum_probs=217.3
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
|.|++++ ++|||||+||||+|||+|+++.. ++|||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||+
T Consensus 41 g~~~~i~-~kldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 41 GWYNFLM-GKVDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 5789987 58999999999999999999754 67999999999999 69999999999999999999999999999999
Q ss_pred CCCCCCCCC---CCCC-CCCCCCCCcc----cC------CCCCCC-C---CCCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 035501 276 SNNVTDGLN---GFDV-GQSSQESYFH----TG------DRGYHK-L---WDSRLFNYANWEVLRFLLSNLRWWIEEFKF 337 (732)
Q Consensus 276 ~~~~~~~~~---~~d~-~~~~~~~yf~----~~------~~g~~~-~---w~~~~ln~~~p~v~~~i~~~l~~Wl~e~gi 337 (732)
+.++..... .|.+ .+.+...|+. .+ ..+... . .+.++||++||+|+++|++++++|++++||
T Consensus 118 ~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~Gi 197 (428)
T PLN00196 118 TAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGF 197 (428)
T ss_pred ccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 976532111 1111 1111222321 00 011111 1 136899999999999999999999888999
Q ss_pred eEEeecCccccccccccccchhhhhHhh-hcceEEEeeccCCCCC-----CC-----------ccccc-C-----Cceec
Q 035501 338 DGFRFDGVTSMLYHHHGINMSFTGNYNE-YFNATVIAEDVSGMPG-----LG-----------SPVSM-G-----GIGFD 394 (732)
Q Consensus 338 DGfR~D~~~~~~~~~~g~~~~f~~~~~~-~~~~~~iaE~~~~~~~-----~~-----------~~~~~-~-----g~gFd 394 (732)
||||||+|+++ ...|++++.. ....++|||.|.+... +. ..+.. + ...||
T Consensus 198 DG~RlD~ak~~-------~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~~~~~~fD 270 (428)
T PLN00196 198 DAWRLDFAKGY-------SAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAASPATVFD 270 (428)
T ss_pred CEEEeehhhhC-------CHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCccCcceeec
Confidence 99999999887 5678776543 2237899999975211 00 00000 1 11244
Q ss_pred ccccccccHHHHHHHhcCCCCCccHHHHH---HHhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCC
Q 035501 395 YRLAMAIPDRWIDYLKNKKDEEWSMKEIS---QSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDA 471 (732)
Q Consensus 395 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~---~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~ 471 (732)
|.... .....+.+ ..|.+.... ..+. ..+|..+|||++|||+.|.... . .
T Consensus 271 F~~~~----~~~~~~~~---~~~~l~~~~~~~~~~~-~~~P~~aVtFvdNHDT~r~~~~------~------------~- 323 (428)
T PLN00196 271 FTTKG----ILNVAVEG---ELWRLRGADGKAPGVI-GWWPAKAVTFVDNHDTGSTQHM------W------------P- 323 (428)
T ss_pred ccchH----HHHHHhcC---CchhhhhhcccCcchh-hcChhhceeeccCCCCcccccc------C------------C-
Confidence 43221 01111211 122221111 1111 2567889999999999885210 0 0
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHH
Q 035501 472 SPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNE 551 (732)
Q Consensus 472 ~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~ 551 (732)
....+.++|.+++||+||+||+ |||+= .+|. +.+++++|++
T Consensus 324 -----~~~~~~~lAyA~iLT~pG~P~I-yYg~~----------------------~~~~-----------~~~~i~~Li~ 364 (428)
T PLN00196 324 -----FPSDKVMQGYAYILTHPGNPCI-FYDHF----------------------FDWG-----------LKEEIAALVS 364 (428)
T ss_pred -----CccchHHHHHHHHHcCCCcceE-eeCCC----------------------cCcc-----------HHHHHHHHHH
Confidence 0123568999999999999965 99941 2331 4468999999
Q ss_pred HHHhCCCCcCCceEEEeccCCCcEEEEEeC-cEEEEEECC
Q 035501 552 LDDKFPFLASTKQIVSSTNEEDKVIVFERG-DLVFVFNFH 590 (732)
Q Consensus 552 lR~~~~aL~~g~~~~~~~~~~~~vlaf~R~-~~lvv~N~s 590 (732)
+||++++|+.|...+...+. .|++++|+ .++|.+|..
T Consensus 365 ~Rk~~~~~~~g~~~~~~a~~--d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 365 IRNRNGITPTSELRIMEADA--DLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred HHHhCCCcCCccEEEEEecC--CEEEEEECCEEEEEECCC
Confidence 99999999999766655443 49999995 599999875
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=5.5e-45 Score=389.97 Aligned_cols=272 Identities=24% Similarity=0.398 Sum_probs=186.2
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
|||+||+ ++|||||+||||+||||||++.+. ++|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 7999998 589999999999999999999665 88999999999999999999999999999999999999999999999
Q ss_pred CCCCCC---CCCCCCCCCCCCCCccc---------------CCCCC--------CCCC-CCCCCCCCCHHHHHHHHHHHH
Q 035501 277 NNVTDG---LNGFDVGQSSQESYFHT---------------GDRGY--------HKLW-DSRLFNYANWEVLRFLLSNLR 329 (732)
Q Consensus 277 ~~~~~~---~~~~d~~~~~~~~yf~~---------------~~~g~--------~~~w-~~~~ln~~~p~v~~~i~~~l~ 329 (732)
.++.+. ....+ .....||.. +...+ +..| +.++||++||+||++|+++++
T Consensus 79 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 79 DDHPWFQDSLNYFD---NPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp TTSHHHHHHHTHTT---STTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred cccccccccccccc---cccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 987541 11111 001122210 00000 1122 457999999999999999999
Q ss_pred HHHHhcCceEEeecCccccccccccccchhhhhHhhh-----cceEEEeeccCCCCCCCccc-ccCCceecccccccccH
Q 035501 330 WWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEY-----FNATVIAEDVSGMPGLGSPV-SMGGIGFDYRLAMAIPD 403 (732)
Q Consensus 330 ~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~-----~~~~~iaE~~~~~~~~~~~~-~~~g~gFd~~~~~~~~~ 403 (732)
+|+++ ||||||||++++| ..+|++++... +.+++|||.+.+........ .... +++.....+..
T Consensus 156 ~w~~~-giDGfR~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 225 (316)
T PF00128_consen 156 FWIEE-GIDGFRLDAAKHI-------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGY--FDLDSVFDFPD 225 (316)
T ss_dssp HHHHT-TESEEEETTGGGS-------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGT--TSHSEEEHHHH
T ss_pred chhhc-eEeEEEEcccccc-------chhhHHHHhhhhhhhccccceeeeeccCCccccchhhhccc--cccchhhcccc
Confidence 99995 7999999999988 45777766543 56899999986543211111 0111 11110011111
Q ss_pred -HHHHHHh-cCCCCCccHHHHHHHhh----cCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHH
Q 035501 404 -RWIDYLK-NKKDEEWSMKEISQSLT----NRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIER 477 (732)
Q Consensus 404 -~~~~~l~-~~~~~~~~~~~l~~~l~----~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~ 477 (732)
.+...+. ........+..+...+. ....+...++|++|||+.|+..+.. +
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-----~------------------- 281 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG-----N------------------- 281 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT-----T-------------------
T ss_pred cccccchhhhhccccchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc-----c-------------------
Confidence 1122221 01112223334333332 1122567899999999998643221 0
Q ss_pred HHHHHHHHHHHHHHcCCCCeEeecCCCCCCC
Q 035501 478 GITLHKMIHFITMALGGEGYLNFMGNEFGHP 508 (732)
Q Consensus 478 ~~~~~kla~~ll~t~pG~P~liy~G~E~G~~ 508 (732)
...+.+++.+++||+||+| +||||+|+|+.
T Consensus 282 ~~~~~~~a~~~ll~~pG~P-~iy~G~E~g~~ 311 (316)
T PF00128_consen 282 NRDRLKLALAFLLTSPGIP-MIYYGDEIGMT 311 (316)
T ss_dssp HHHHHHHHHHHHHHSSSEE-EEETTGGGTBB
T ss_pred cchHHHHHHHHHHcCCCcc-EEEeChhccCC
Confidence 1227899999999999999 77999999996
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.3e-41 Score=370.75 Aligned_cols=334 Identities=14% Similarity=0.207 Sum_probs=221.2
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
-|++++ ++||||++||||+|||+|++++. ++|||++.|||.++++|||.+|||+||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSL--APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCC--CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 478887 58999999999999999999864 569999999999999999999999999999999999999999999964
Q ss_pred CCCC---CCCCCCCCCCCCC--CCccc-CCCCCCCC---C-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccc
Q 035501 278 NVTD---GLNGFDVGQSSQE--SYFHT-GDRGYHKL---W-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTS 347 (732)
Q Consensus 278 ~~~~---~~~~~d~~~~~~~--~yf~~-~~~g~~~~---w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~ 347 (732)
.... ....|.+.+.... .++.. +..+.... + +.++||++||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 3211 1111221100000 01110 11111111 1 368999999999999999998777779999999999998
Q ss_pred cccccccccchhhhhHhhhcc-eEEEeeccCCCCCC-----C------------cccc-cC--CceecccccccccHHHH
Q 035501 348 MLYHHHGINMSFTGNYNEYFN-ATVIAEDVSGMPGL-----G------------SPVS-MG--GIGFDYRLAMAIPDRWI 406 (732)
Q Consensus 348 ~~~~~~g~~~~f~~~~~~~~~-~~~iaE~~~~~~~~-----~------------~~~~-~~--g~gFd~~~~~~~~~~~~ 406 (732)
+ +..|++++.+..+ .++|||.|.+.... . ..+. .+ ...|||++...+.
T Consensus 184 ~-------~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~---- 252 (401)
T PLN02361 184 Y-------SAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQ---- 252 (401)
T ss_pred C-------CHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHH----
Confidence 7 6789998876543 78999999752210 0 0001 11 1246665443222
Q ss_pred HHHhcCCCCCccHHHHHH---HhhcCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHH
Q 035501 407 DYLKNKKDEEWSMKEISQ---SLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHK 483 (732)
Q Consensus 407 ~~l~~~~~~~~~~~~l~~---~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~k 483 (732)
+.+.+ ..|.+.+... .+. ..+|.++|+|++|||+.|.... . + ....+.+
T Consensus 253 ~a~~~---~~~~l~~~~~~~~~~~-~~~p~~aVTFvdNHDt~r~~~~------~---------------~---~~~~~~~ 304 (401)
T PLN02361 253 EAVKG---QWWRLRDAQGKPPGVM-GWWPSRAVTFIDNHDTGSTQAH------W---------------P---FPSDHIM 304 (401)
T ss_pred HHHhh---hHHHHhhhhcCCcchh-hcChhhceEecccCcCcchhhc------c---------------C---CchHHHH
Confidence 22211 1122221111 111 2467899999999998874210 0 0 0134667
Q ss_pred HHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCc
Q 035501 484 MIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTK 563 (732)
Q Consensus 484 la~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~ 563 (732)
+|.+++||+||+||+ |||+= .+|+ ..+.+++++|+.|||++++++.|.
T Consensus 305 ~AyA~iLT~pG~P~V-yyg~~----------------------~~~~---------~~~~~~I~~Li~lRk~~~~~~~s~ 352 (401)
T PLN02361 305 EGYAYILTHPGIPTV-FYDHF----------------------YDWG---------GSIHDQIVKLIDIRKRQDIHSRSS 352 (401)
T ss_pred HHHHHHHCCCCcCeE-eeccc----------------------cCCC---------hHHHHHHHHHHHHHHhCCCCCCCc
Confidence 899999999999965 99862 1232 137889999999999999999997
Q ss_pred eEEEeccCCCcEEEEEeCcEEEEEECCCCCccccEEEecCCCCcEEEEecCC
Q 035501 564 QIVSSTNEEDKVIVFERGDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSD 615 (732)
Q Consensus 564 ~~~~~~~~~~~vlaf~R~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd 615 (732)
..+.... ++..+|-..++++|=++... -+|.+..|+.+.+.+
T Consensus 353 ~~i~~a~-~~~y~a~i~~~~~~k~g~~~---------~~p~~~~~~~~~~g~ 394 (401)
T PLN02361 353 IRILEAQ-SNLYSAIIDEKLCMKIGDGS---------WCPSGREWTLATSGH 394 (401)
T ss_pred EEEEEec-CCeEEEEECCeEEEEecCCC---------CCCCCCCceEEEecC
Confidence 6655443 33344445456555554321 123344577776543
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.6e-37 Score=344.09 Aligned_cols=371 Identities=14% Similarity=0.141 Sum_probs=234.6
Q ss_pred CChHhHHHhhhh-HHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 197 NSYREFADDVLP-RIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 197 g~~~~~~~~~Ld-yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
|+++|++ ++|| ||++| |++|||||+|+....+.+||+++||+.|+|+|||.+||++|++ ||+||||+|+||+
T Consensus 17 GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NHt 89 (495)
T PRK13840 17 GGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNHM 89 (495)
T ss_pred CCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCcC
Confidence 7999998 5899 59999 9999999999643346899999999999999999999999995 9999999999999
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCcccCC-------------------CC------------CCCCC-----CCCCCCCCCH
Q 035501 276 SNNVTDGLNGF-DVGQSSQESYFHTGD-------------------RG------------YHKLW-----DSRLFNYANW 318 (732)
Q Consensus 276 ~~~~~~~~~~~-d~~~~~~~~yf~~~~-------------------~g------------~~~~w-----~~~~ln~~~p 318 (732)
|..|+|..... .+..+.+..||...+ .+ ....| ..++||++||
T Consensus 90 S~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP 169 (495)
T PRK13840 90 SAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSA 169 (495)
T ss_pred CCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCH
Confidence 99886532211 111122233332100 00 00112 2589999999
Q ss_pred HHHHHHHHHHHHHHHhcCceEEeecCccccccccc------cccchhhhhHhhhc---ceEEEeeccCCCCCCCcccccC
Q 035501 319 EVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHH------GINMSFTGNYNEYF---NATVIAEDVSGMPGLGSPVSMG 389 (732)
Q Consensus 319 ~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~------g~~~~f~~~~~~~~---~~~~iaE~~~~~~~~~~~~~~~ 389 (732)
+|+++|++++++|++ .||||||+|++.++..... ....+|++.++... +..+|+|.++.......-....
T Consensus 170 ~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~e~ 248 (495)
T PRK13840 170 AGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAKKV 248 (495)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccccc
Confidence 999999999999998 6999999999988754311 01245777776543 4778999875332111111122
Q ss_pred CceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccccccch-----hhHhhhccHh----
Q 035501 390 GIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDK-----TIAFLLMDQE---- 460 (732)
Q Consensus 390 g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~-----~~~f~l~d~~---- 460 (732)
...||| ..+..++..+... +...|...+.. .|.+++||+.|||...+.+- ...-.|.+.+
T Consensus 249 ~~vYnF----~Lp~ll~~aL~~~-----~~~~L~~~l~~--~p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l 317 (495)
T PRK13840 249 DRVYDF----ALPPLILHTLFTG-----DVEALAHWLEI--RPRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNL 317 (495)
T ss_pred cEEecc----hhhHHHHHHHHhC-----CchHHHHHHHh--CCCccEEeeecCCCCCcccccccccccccCCCHHHHHHH
Confidence 333444 4444444444332 22344555543 36677899999998876111 0000111111
Q ss_pred --hh-hccccC-------C--CCC-----cch----HHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCC-CCCC
Q 035501 461 --MY-TGMSSL-------T--DAS-----PTI----ERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFP-REGN 518 (732)
Q Consensus 461 --~y-~~~~~~-------~--~~~-----~~~----~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p-~~g~ 518 (732)
.| ...... . ... -.. .....+..++++++|++||+| ++|||+|+|..+..+.- +.|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP-~iY~~~ll~~~ND~~~~~~t~~ 396 (495)
T PRK13840 318 VETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIP-QVYYVGLLAGPNDMELLARTNV 396 (495)
T ss_pred HHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCcc-eeeechhhccCccHHHHHhcCC
Confidence 00 000000 0 000 011 111246788899999999999 78999999986432211 2344
Q ss_pred cCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe--C--cEEEEEECCCC
Q 035501 519 EWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFER--G--DLVFVFNFHPE 592 (732)
Q Consensus 519 ~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R--~--~~lvv~N~s~~ 592 (732)
+...+|..++|+..+..- .+.+++-+++|+++|+++|||+..+.. ... ++..++..| + ...+.+|+...
T Consensus 397 ~R~inR~~~~~~~~~~~l--~~~v~~~l~~li~~R~~~~aF~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (495)
T PRK13840 397 GRDINRHYYSTAEIDEAL--ERPVVKALNALIRFRNEHPAFDGAFSY-AAD--GDTSLTLSWTAGDSSASLTLDFAPK 469 (495)
T ss_pred CcccCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHhcCcccCceEEE-ecC--CCCeEEEEEecCCceEEEEEEcccc
Confidence 445566667777655432 245899999999999999999644432 222 333455555 3 36777888765
No 31
>PLN02784 alpha-amylase
Probab=100.00 E-value=8e-37 Score=348.83 Aligned_cols=331 Identities=17% Similarity=0.212 Sum_probs=206.5
Q ss_pred CceEEEEecCCCCCC-CCCCC-hHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHH
Q 035501 179 APRIYEAHVGMSSSE-PRVNS-YREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLI 256 (732)
Q Consensus 179 ~~~IYE~hv~~~~~~-~~~g~-~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV 256 (732)
....||+.+..|..+ +.-|. |++++ ++||||++||||+|||+|++++. .+|||+|.|||.++++|||.+|||.||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~--s~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESV--SPEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCC--CCCCcCcccccccCcCcCCHHHHHHHH
Confidence 346778877777532 22233 67887 58999999999999999999765 679999999999999999999999999
Q ss_pred HHHHHCCCEEEEeecccccCCCCCCC---CCCCCC----CC---CCCCCCccc-CCCCCCCCC-CCCCCCCCCHHHHHHH
Q 035501 257 DKAHSLGLRVLVDIVHSHASNNVTDG---LNGFDV----GQ---SSQESYFHT-GDRGYHKLW-DSRLFNYANWEVLRFL 324 (732)
Q Consensus 257 ~~~H~~GI~VIlDvV~NH~~~~~~~~---~~~~d~----~~---~~~~~yf~~-~~~g~~~~w-~~~~ln~~~p~v~~~i 324 (732)
++||++||+||+|+|+||++..+... .+.|.. .. ......|.. +.......| +.++||++||+||++|
T Consensus 575 ~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL 654 (894)
T PLN02784 575 KSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDL 654 (894)
T ss_pred HHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHH
Confidence 99999999999999999998643111 111110 00 000111211 100011122 4689999999999999
Q ss_pred HHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhhcc-eEEEeeccCCCCCC---------------Cccccc
Q 035501 325 LSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYFN-ATVIAEDVSGMPGL---------------GSPVSM 388 (732)
Q Consensus 325 ~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~~-~~~iaE~~~~~~~~---------------~~~~~~ 388 (732)
.++++||++++||||||||+|+++ ...|.+++.+..+ .++|||.|++...- ...+..
T Consensus 655 ~~WlkWL~~e~G~DGfRLDaVKgf-------~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~ 727 (894)
T PLN02784 655 KEWLCWMRKEVGYDGWRLDFVRGF-------WGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINA 727 (894)
T ss_pred HHHHHHHHhccCCCEEEEeccCCC-------CHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHh
Confidence 999999999999999999999865 4566666554433 79999999763210 000000
Q ss_pred -C--CceecccccccccHHHHHHHhcCCCCCccHHHHH---HHhhcCcCcccceecccccccccccchhhHhhhccHhhh
Q 035501 389 -G--GIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEIS---QSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMY 462 (732)
Q Consensus 389 -~--g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~---~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y 462 (732)
+ ...||+.+...+ .+.+.. ...|.+.... ..+. ..+|.++|+|++|||+.+.....
T Consensus 728 tgg~~saFDfplk~~L----~~A~~~--~e~wrL~d~~g~~~glv-~~~P~~AVTFVDNHDTg~~Q~~w----------- 789 (894)
T PLN02784 728 TNGTAGAFDVTTKGIL----HSALER--CEYWRLSDQKGKPPGVV-GWWPSRAVTFIENHDTGSTQGHW----------- 789 (894)
T ss_pred CCCceeeechhHHHHH----HHHHhc--cchhhhhhccCCCCCee-ccccCceEEEecCCCCCCCcccC-----------
Confidence 1 122343322111 111110 1122222111 0111 24688999999999976521100
Q ss_pred hccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCCccCCcccccchHH
Q 035501 463 TGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQWNLVDADHLRYKFM 542 (732)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W~~~~~~~~~~~~l 542 (732)
.. ...+..+|++++||.||+||+ |||+=+|. +
T Consensus 790 --------~~-----p~~k~~~AYAyILthpG~PcV-Fy~h~y~~----------------------------------~ 821 (894)
T PLN02784 790 --------RF-----PEGKEMQGYAYILTHPGTPAV-FYDHIFSH----------------------------------Y 821 (894)
T ss_pred --------CC-----CccchhhHHHHHHcCCCcceE-Eehhhhhh----------------------------------h
Confidence 00 112345689999999999977 88865442 1
Q ss_pred HHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEE-eCcEEEEE
Q 035501 543 NAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFE-RGDLVFVF 587 (732)
Q Consensus 543 ~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~-R~~~lvv~ 587 (732)
.+-+++|+.+|++...-......+... + ..+++-. .+.++|-+
T Consensus 822 ~~~I~~Li~iRk~~gI~~~S~v~i~~a-~-~~~Y~a~i~~k~~~ki 865 (894)
T PLN02784 822 HPEIASLISLRNRQKIHCRSEVKITKA-E-RDVYAAIIDEKVAMKI 865 (894)
T ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEe-c-CCcEEEEeCCeeEEEE
Confidence 234999999999865433333233222 2 2244433 34455544
No 32
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=9.8e-38 Score=343.70 Aligned_cols=369 Identities=13% Similarity=0.105 Sum_probs=232.6
Q ss_pred CCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 193 EPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 193 ~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
.++.|++.++++ + ||++ ||++|||||+|+++ +++||+++||+.|+|+|||.+||++|+++ |+||+|+|+
T Consensus 13 g~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~--sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~ 81 (470)
T TIGR03852 13 GKNLKELNKVLE-N--YFKD-AVGGVHLLPFFPST--GDRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMI 81 (470)
T ss_pred CCChhhHHHHHH-H--HHHH-hCCEEEECCCCcCC--CCCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcc
Confidence 356788888874 4 9999 79999999999765 58999999999999999999999999997 899999999
Q ss_pred cccCCCCCCCCCCCCC-CCCCCCCCcc-c----C---C-----------C------------CC-CCCC-----CCCCCC
Q 035501 273 SHASNNVTDGLNGFDV-GQSSQESYFH-T----G---D-----------R------------GY-HKLW-----DSRLFN 314 (732)
Q Consensus 273 NH~~~~~~~~~~~~d~-~~~~~~~yf~-~----~---~-----------~------------g~-~~~w-----~~~~ln 314 (732)
||+|..|+|....... ..+.+..||. . . . + +. ...| +.++||
T Consensus 82 NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN 161 (470)
T TIGR03852 82 NHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLD 161 (470)
T ss_pred cccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccC
Confidence 9999998653222111 1233444554 0 0 0 0 00 0012 258999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccc--------cchhhhhHhh---hcceEEEeeccCCCCCCC
Q 035501 315 YANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGI--------NMSFTGNYNE---YFNATVIAEDVSGMPGLG 383 (732)
Q Consensus 315 ~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~--------~~~f~~~~~~---~~~~~~iaE~~~~~~~~~ 383 (732)
|.||+|+++|.++++||++ .||||||+|++.++.+.. |. ..++++.+++ .+++++|+|.+.......
T Consensus 162 ~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~-Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~ 239 (470)
T TIGR03852 162 VTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKL-GTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQF 239 (470)
T ss_pred CCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccC-CCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccc
Confidence 9999999999999999997 699999999999886542 21 1344555544 346999999864332211
Q ss_pred cccccCCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccHh---
Q 035501 384 SPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQE--- 460 (732)
Q Consensus 384 ~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~--- 460 (732)
.-...+...|+|.+. -..+-.+. ..+...|...+.. .+...+||+.|||...+.+- .-.|.+.+
T Consensus 240 ~~gde~~mvY~F~lp----pl~l~al~-----~~~~~~l~~wl~~--~p~~~~nfL~sHDgigl~~~--~glL~~~ei~~ 306 (470)
T TIGR03852 240 KIAEHGYYVYDFALP----MLVLYSLY-----SGKTNRLADWLRK--SPMKQFTTLDTHDGIGVVDV--KDLLTDEEIDY 306 (470)
T ss_pred ccccceeEEccCccc----hhhHHHhh-----ccCHHHHHHHHHh--CcccceEEeecCCCCCCccc--cccCCHHHHHH
Confidence 101222333333322 11111111 1234556666653 33455799999998765221 00111111
Q ss_pred hhhc-------ccc------CCCCC---------cchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCC-CCC
Q 035501 461 MYTG-------MSS------LTDAS---------PTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFP-REG 517 (732)
Q Consensus 461 ~y~~-------~~~------~~~~~---------~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p-~~g 517 (732)
++.. ++. ..... +.+....++..+|++++|++||+| .+|||+|+|+.+..+.+ +.|
T Consensus 307 l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP-~iYy~~llg~~nD~~~~~rt~ 385 (470)
T TIGR03852 307 TSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIP-QVYYVGLLAGKNDIELLEETK 385 (470)
T ss_pred HHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCc-eEEechhhcCCchHHHHHhcC
Confidence 0110 110 00010 111222467789999999999999 66999999997655433 233
Q ss_pred CcCccccccCCCccCCcccccchHHHHHHHHHHHHHHhCCCCcC-CceEEEeccCCCcEEEEEeC------cEEEEEECC
Q 035501 518 NEWSYEKCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPFLAS-TKQIVSSTNEEDKVIVFERG------DLVFVFNFH 590 (732)
Q Consensus 518 ~~~s~~~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~-g~~~~~~~~~~~~vlaf~R~------~~lvv~N~s 590 (732)
.+...++ -.|+..+-...-.+.+.+-+.+||++|+++|+|+. |... ....++.|+++.|. .+++++|++
T Consensus 386 ~~R~Inr--~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~n~~ 461 (470)
T TIGR03852 386 EGRNINR--HYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSID--IETPSENQIEIVRTNKDGGNKAILTANLK 461 (470)
T ss_pred CCCCCCC--CCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceE--ecCCCCcEEEEEEEcCCCCceEEEEEecC
Confidence 3333333 34443221100012344445559999999999988 5443 33456679999982 499999999
Q ss_pred CC
Q 035501 591 PE 592 (732)
Q Consensus 591 ~~ 592 (732)
..
T Consensus 462 ~~ 463 (470)
T TIGR03852 462 TK 463 (470)
T ss_pred CC
Confidence 76
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=350.47 Aligned_cols=384 Identities=19% Similarity=0.295 Sum_probs=231.0
Q ss_pred ceEEEEecCCCCCC--------CCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHH
Q 035501 180 PRIYEAHVGMSSSE--------PRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPED 251 (732)
Q Consensus 180 ~~IYE~hv~~~~~~--------~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~d 251 (732)
.+||++.++.|... .+.|+++|++ ++|||||+|||++|||+||++.+ ..+|||++.||+.++|.|||.+|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~-~~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESP-QADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCC-ccCCCccccchhhcCcccCCHHH
Confidence 47999999988544 3469999998 58999999999999999999864 57899999999999999999999
Q ss_pred HHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCC-CCCcc-----------------cCCCCCC-------C
Q 035501 252 LKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQ-ESYFH-----------------TGDRGYH-------K 306 (732)
Q Consensus 252 fk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~-~~yf~-----------------~~~~g~~-------~ 306 (732)
|++||++||++||+||||+|+||++..+.+........+... ..||. .+...+. .
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 999999999999999999999999998853211111110000 02221 0111010 0
Q ss_pred --CC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccc----cccchhhhhHhhhcc-----eEEEe
Q 035501 307 --LW--DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHH----GINMSFTGNYNEYFN-----ATVIA 373 (732)
Q Consensus 307 --~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~----g~~~~f~~~~~~~~~-----~~~ia 373 (732)
.+ ..++||+.||+||++++++++||++ +||||||+|+++++..... .....++..+.++.+ ++..+
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYG 237 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 00 1368999999999999999999999 8999999999999853211 001123333332211 22222
Q ss_pred eccCCCCCCCcccccCCceecccccccccHHHHHHHhcCCC--------CCccHHHHHHHhhcC--cC---cccceeccc
Q 035501 374 EDVSGMPGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKD--------EEWSMKEISQSLTNR--RY---TEKCISYAE 440 (732)
Q Consensus 374 E~~~~~~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~--------~~~~~~~l~~~l~~~--~~---~~~~v~f~~ 440 (732)
+.+........ ...++..........-..++..... .......+...+... .. ......|..
T Consensus 238 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (505)
T COG0366 238 EAITDVGEAPG-----AVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNLFLS 312 (505)
T ss_pred cceeeeecccc-----ccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhhhhh
Confidence 22211000000 0000000000000000001100000 011222232222210 11 122233789
Q ss_pred ccccccccchhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCC----
Q 035501 441 SHDQAIVGDKTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPRE---- 516 (732)
Q Consensus 441 nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~---- 516 (732)
|||+.|+-++.. + .........+++.+++++++|+| .+|||+|.|++...+.+..
T Consensus 313 ~hD~~r~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~g~p-~iy~G~e~g~~~~~~~~~~~~~~ 371 (505)
T COG0366 313 NHDQPRLLSRFG-----D---------------DVGGRDASAKLLAALLFLLPGTP-FIYYGDELGLTNFKDPPIKYYDD 371 (505)
T ss_pred hcCccceeeecc-----C---------------CccchHHHHHHHHHHHHhCCCCc-EEecccccCCCCCCCcchhhhch
Confidence 999998654321 0 00002456788889999999999 5599999999743222100
Q ss_pred -------CCcCccccccCCCccCCc------------------------c---cccchHHHHHHHHHHHHHHhCC-CCcC
Q 035501 517 -------GNEWSYEKCRRQWNLVDA------------------------D---HLRYKFMNAFGRAMNELDDKFP-FLAS 561 (732)
Q Consensus 517 -------g~~~s~~~~~~~W~~~~~------------------------~---~~~~~~l~~f~r~Li~lR~~~~-aL~~ 561 (732)
.....-++..++|+.... . ......++.++++|+++|+.+. .+..
T Consensus 372 ~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~ 451 (505)
T COG0366 372 VELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLAN 451 (505)
T ss_pred hhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcC
Confidence 000112344567761110 0 0012468899999999999884 4455
Q ss_pred CceEEEeccCCCcEEEEEeCc----EEEEEECCCC
Q 035501 562 TKQIVSSTNEEDKVIVFERGD----LVFVFNFHPE 592 (732)
Q Consensus 562 g~~~~~~~~~~~~vlaf~R~~----~lvv~N~s~~ 592 (732)
|.........+..+++|.|.. ++|++|++..
T Consensus 452 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 486 (505)
T COG0366 452 GEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEE 486 (505)
T ss_pred cccceecCCCCceEEEEecccCCceEEEEEcCCCc
Confidence 645555555566799999952 8999999875
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=328.75 Aligned_cols=400 Identities=18% Similarity=0.191 Sum_probs=232.6
Q ss_pred CCCCceEEEEecCCCCCC--CCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHH
Q 035501 176 KPKAPRIYEAHVGMSSSE--PRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLK 253 (732)
Q Consensus 176 ~~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk 253 (732)
+++..+|||+.+++|..+ .+.|+++|++ ++|||||+||+|+|||+||++.+. .++||++.||+.++|+|||.+||+
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~-~~~GY~~~d~~~l~p~fGt~edf~ 91 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSK-PDFGYDASDLEQLRPRFGTEEDFK 91 (545)
T ss_pred hhhcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCH-HHhccCccchhhhcccccHHHHHH
Confidence 457789999999999654 4568999998 589999999999999999999764 489999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCC----------------------CCCCCcccCCCC--------
Q 035501 254 YLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQS----------------------SQESYFHTGDRG-------- 303 (732)
Q Consensus 254 ~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~----------------------~~~~yf~~~~~g-------- 303 (732)
+||+++|++||++|+|+|+||++..+.|.......... .+..+|......
T Consensus 92 ~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~ 171 (545)
T KOG0471|consen 92 ELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKY 171 (545)
T ss_pred HHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccce
Confidence 99999999999999999999999766543222211111 011122211100
Q ss_pred CCCCC--CCCCCCCCCHHHHHHHHHHHH-HHHHhcCceEEeecCccccccccccccchhhhhHhhhcceEEEeeccCCCC
Q 035501 304 YHKLW--DSRLFNYANWEVLRFLLSNLR-WWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYFNATVIAEDVSGMP 380 (732)
Q Consensus 304 ~~~~w--~~~~ln~~~p~v~~~i~~~l~-~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~~~~~iaE~~~~~~ 380 (732)
+...+ ..+++|++||+|++.|.++++ +|++ +||||||+|++.++. ..++...-.......+||.+.+.+
T Consensus 172 ~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~-------~~~~~~~~~~~p~~~~~~~~~~~~ 243 (545)
T KOG0471|consen 172 YLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA-------GENFKNMWPDEPVFDVGEKLQDDN 243 (545)
T ss_pred eccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc-------cccccccccCCCcccceeEecCcc
Confidence 01111 247999999999999999999 7777 899999999999873 222221111122566778766555
Q ss_pred CCCcccccCCceecccccccccHHHHHHHhcCCCCCc-cHHHHHHHhhcCcCcccceecccccccccccchhhHhhhccH
Q 035501 381 GLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEW-SMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLMDQ 459 (732)
Q Consensus 381 ~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~ 459 (732)
....... ..+.+......+...+...+........ .-..+...-.. ...+..++|.+||+.++..+....+-....
T Consensus 244 ~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~ 320 (545)
T KOG0471|consen 244 YVAYQYN--DYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAY-SSLEQLLRLLENSSKPRGSDLPFNFDTLSD 320 (545)
T ss_pred hhhcccc--cccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhh-ccHHHHHhhhccCCCCccccccchhhhhhh
Confidence 4432111 1111111111111111111111100000 00000000000 002234455555554442211110000000
Q ss_pred ------h-------hhhc-cccCC------CCCcchHH-----HHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCc-cCC
Q 035501 460 ------E-------MYTG-MSSLT------DASPTIER-----GITLHKMIHFITMALGGEGYLNFMGNEFGHPEW-IDF 513 (732)
Q Consensus 460 ------~-------~y~~-~~~~~------~~~~~~~~-----~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~-~d~ 513 (732)
. .+.. +.... ..+....+ +.+..++..++++++||+| .+|+|+|+|+... +..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~-~~y~g~e~g~~~~~~~~ 399 (545)
T KOG0471|consen 321 LGLTVASIYKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTP-VTYYGEEIGMDDVAISG 399 (545)
T ss_pred hhccchHHHHHHHHHHHhcCCccCCceeeeecCccchhhHHHhcchhHHHHhHHhcccCCCc-eEEEeEEeeccceeecc
Confidence 0 0000 00000 00011111 1223577789999999999 5699999999632 110
Q ss_pred CCCCCcC-ccc-cccCCCccCCcc------------------------cccchHHHHHHHHHHHHHHhCCCCcCCceEEE
Q 035501 514 PREGNEW-SYE-KCRRQWNLVDAD------------------------HLRYKFMNAFGRAMNELDDKFPFLASTKQIVS 567 (732)
Q Consensus 514 p~~g~~~-s~~-~~~~~W~~~~~~------------------------~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~ 567 (732)
..+-.. ..+ +.+++|+..... ....+.++.+++++..||+.+..+..|.....
T Consensus 400 -~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~ 478 (545)
T KOG0471|consen 400 -EDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLF 478 (545)
T ss_pred -CCCcCcHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeee
Confidence 011111 011 455677654100 00125788999999999999876667754443
Q ss_pred eccCCCcEEEEEeC-----cEEEEEECCCC
Q 035501 568 STNEEDKVIVFERG-----DLVFVFNFHPE 592 (732)
Q Consensus 568 ~~~~~~~vlaf~R~-----~~lvv~N~s~~ 592 (732)
. .+..+++|.|. .+++++|++..
T Consensus 479 ~--~~~~if~~~r~~~~~~~~~~~~~~~~~ 506 (545)
T KOG0471|consen 479 A--ATPGLFSFSRNWDGNERFIAVLNFGDS 506 (545)
T ss_pred c--CCCceEEEEeccCCCceEEEEEecCCc
Confidence 3 34559999994 37777787765
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=2.1e-33 Score=311.41 Aligned_cols=449 Identities=13% Similarity=0.103 Sum_probs=271.0
Q ss_pred CCceEEEEecCCCCCCCCCCChHhHHH-hhhhHHHHCCCCEEEECCcccc---------cccCCCCcccCccccCCCCCC
Q 035501 178 KAPRIYEAHVGMSSSEPRVNSYREFAD-DVLPRIRANNYNTVQLMAVMEH---------SYYASFGYHVTNFFAASSRSG 247 (732)
Q Consensus 178 ~~~~IYE~hv~~~~~~~~~g~~~~~~~-~~LdyLk~LGvt~I~L~Pi~e~---------~~~~~~GY~~~~y~av~~~~G 247 (732)
...+=+.+++.+....++..-+..+.+ ...+||++|||++|||+|++++ | ....|||++|| .|+|+||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP-~~D~gyDi~d~-~Idp~~G 127 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTP-SIDGNFDRISF-DIDPLLG 127 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCC-CCCCCCCcccC-ccCcccC
Confidence 445677788887755444333333432 5689999999999999999987 4 34689999995 9999999
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcc-----------c---CCC-----------
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH-----------T---GDR----------- 302 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~-----------~---~~~----------- 302 (732)
|.+||++||++||++||+||+|+|+||||..|+.-+..-+ .+.++.||| . .+.
T Consensus 128 T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~--~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~ 205 (688)
T TIGR02455 128 SEEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELA--HGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQC 205 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhc--CCCCCCceeeccccccccccCCCCCcccccccccHHHH
Confidence 9999999999999999999999999999998742111111 123333441 0 000
Q ss_pred ---------------------C-CCCCC------------------------CCCCCCCCCHH--HHHHHH-HHHHHHHH
Q 035501 303 ---------------------G-YHKLW------------------------DSRLFNYANWE--VLRFLL-SNLRWWIE 333 (732)
Q Consensus 303 ---------------------g-~~~~w------------------------~~~~ln~~~p~--v~~~i~-~~l~~Wl~ 333 (732)
+ ..+.| ..|+|||.||. |++.|+ +++++|++
T Consensus 206 ~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~ 285 (688)
T TIGR02455 206 DELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC 285 (688)
T ss_pred HHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH
Confidence 0 00122 23799999999 999999 89999999
Q ss_pred hcCceEEeecCcccccccccc--c----cchhhhhHh-------hhcceEEEeeccCCCCCCCcccccCCceeccccccc
Q 035501 334 EFKFDGFRFDGVTSMLYHHHG--I----NMSFTGNYN-------EYFNATVIAEDVSGMPGLGSPVSMGGIGFDYRLAMA 400 (732)
Q Consensus 334 e~giDGfR~D~~~~~~~~~~g--~----~~~f~~~~~-------~~~~~~~iaE~~~~~~~~~~~~~~~g~gFd~~~~~~ 400 (732)
.|+||||+|++.+|+..... . ...|.+..+ .+++.++++|..-....+..... + +.|..+++.
T Consensus 286 -lG~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g-~--~~dl~~dF~ 361 (688)
T TIGR02455 286 -LGARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSH-G--GADLSYDFI 361 (688)
T ss_pred -hccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhC-C--Ccceeeccc
Confidence 79999999999988643211 1 233444333 34568999996532222222222 2 333333322
Q ss_pred ccHH-HHHHHhcCCCCCccHHHHHHHhhc---Cc-Ccccceecccccccccccc-----------------hhhHhhhcc
Q 035501 401 IPDR-WIDYLKNKKDEEWSMKEISQSLTN---RR-YTEKCISYAESHDQAIVGD-----------------KTIAFLLMD 458 (732)
Q Consensus 401 ~~~~-~~~~l~~~~~~~~~~~~l~~~l~~---~~-~~~~~v~f~~nHD~~r~g~-----------------~~~~f~l~d 458 (732)
.+.. ....+.++ ..-|...|.. .. .+.+.++++-|||+..+.- ..-+-.|.+
T Consensus 362 t~p~~~~AL~tgd------a~pLr~~L~~~~~~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e 435 (688)
T TIGR02455 362 TRPAYHHALLTGD------TEFLRLMLKEMHAFGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLRE 435 (688)
T ss_pred ccHHHHHHHHcCC------HHHHHHHHHhhhcCCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCH
Confidence 2222 22222222 2223333321 11 3456688999999854310 000000011
Q ss_pred ---Hhhhhcccc---------------------------CCCCCcchHHHHHHHHHHHHHHHH----cCCCCeEeecC--
Q 035501 459 ---QEMYTGMSS---------------------------LTDASPTIERGITLHKMIHFITMA----LGGEGYLNFMG-- 502 (732)
Q Consensus 459 ---~~~y~~~~~---------------------------~~~~~~~~~~~~~~~kla~~ll~t----~pG~P~liy~G-- 502 (732)
..||...+. .....|..+...+..+++.++|++ +||+| +++||
T Consensus 436 ~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p-~L~ygdl 514 (688)
T TIGR02455 436 HIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVF-ALSGWDL 514 (688)
T ss_pred HHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCce-Eeecccc
Confidence 112211110 001223334456778899999999 99999 66999
Q ss_pred ------------CCCCCCCccCCCCCCCcCcc----c--------cccCCCccCCcccccchHHHHHHHHHHHHHHhCCC
Q 035501 503 ------------NEFGHPEWIDFPREGNEWSY----E--------KCRRQWNLVDADHLRYKFMNAFGRAMNELDDKFPF 558 (732)
Q Consensus 503 ------------~E~G~~~~~d~p~~g~~~s~----~--------~~~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~~~a 558 (732)
+|+|+-+.+-.++.|-.-.. . ..+.....+........++++.+++|++.|+++++
T Consensus 515 ~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i 594 (688)
T TIGR02455 515 VGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDI 594 (688)
T ss_pred cccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCc
Confidence 99998654444443221100 0 01111111111111135799999999999999999
Q ss_pred CcCCceEEEeccCCCcEEEEEeC------cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccc
Q 035501 559 LASTKQIVSSTNEEDKVIVFERG------DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHF 632 (732)
Q Consensus 559 L~~g~~~~~~~~~~~~vlaf~R~------~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~ 632 (732)
+..+...+ ....+..|+++.|+ .+++|.||+.......+.++--.+|...++++.... +-
T Consensus 595 ~~~~~~~~-~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~--~~----------- 660 (688)
T TIGR02455 595 AASKQILI-PDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVE--GD----------- 660 (688)
T ss_pred ccCceeee-cCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCcc--CC-----------
Confidence 98885333 33455679999882 299999999874333333332134556666653221 00
Q ss_pred cCCCCCCCccccccCCCCcEEEEEeCcceEEEEEEec
Q 035501 633 TSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVYYRVE 669 (732)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~~ 669 (732)
. ...+.+.|+|+|+....|..+.
T Consensus 661 -------------~-~~~~~~~i~L~~y~~~wl~~~~ 683 (688)
T TIGR02455 661 -------------L-TDDCELMINLDPYEALALRIVN 683 (688)
T ss_pred -------------c-CCCceeEEEecCcceEEEEecc
Confidence 0 1225688999999999987643
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.98 E-value=9.5e-31 Score=302.52 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=131.1
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
+||.+++ ++||||++||||+|||+||+++...++|||+++||+.|+|+|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 5899987 589999999999999999999766788999999999999999999999999999999999999999999999
Q ss_pred CC---CCCCCCCCC-CCCCCCCC----------------------------------------------Cccc----CCC
Q 035501 277 NN---VTDGLNGFD-VGQSSQES----------------------------------------------YFHT----GDR 302 (732)
Q Consensus 277 ~~---~~~~~~~~d-~~~~~~~~----------------------------------------------yf~~----~~~ 302 (732)
.+ +.++..... +..+.+.. ||+. .+.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 222110000 00011111 2211 000
Q ss_pred C------------C--------------CCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 303 G------------Y--------------HKLW----------------DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 303 g------------~--------------~~~w----------------~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
. . ...| +.+.++.++|+|.+.....+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0 0 0022 13567889999999999999999998669999
Q ss_pred eecCccccccccccccchhhhhHhhhcc--eEEEee
Q 035501 341 RFDGVTSMLYHHHGINMSFTGNYNEYFN--ATVIAE 374 (732)
Q Consensus 341 R~D~~~~~~~~~~g~~~~f~~~~~~~~~--~~~iaE 374 (732)
|+|.+..+.. +..|++.+++..+ .+++.|
T Consensus 252 RIDh~dGL~d-----P~~Yl~rLr~~~~~~~yivvE 282 (825)
T TIGR02401 252 RIDHIDGLAD-----PEGYLRRLRELVGPARYLVVE 282 (825)
T ss_pred EeccccccCC-----hHHHHHHHHHhcCCCceEEEE
Confidence 9999987621 5679998876554 778888
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=1.4e-25 Score=260.64 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=77.5
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
++|.+++ ++||||++||||+|||+||++....++|||++.||+.|+|+||+.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4899987 589999999999999999999866789999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 035501 277 NNV 279 (732)
Q Consensus 277 ~~~ 279 (732)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 864
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6.6e-22 Score=201.41 Aligned_cols=375 Identities=16% Similarity=0.209 Sum_probs=216.9
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccc----cCCC--CcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSY----YASF--GYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~----~~~~--GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
+|..++.++-..|.--|+-.||..|+.|+.. ...| .|+|++| .++.|-|..+||+.||..|.+-|+++++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-EeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 4778888888999999999999999999732 1233 4999998 8999999999999999999999999999999
Q ss_pred ccccCCCCCC-------CCCCCCCCCC-CCCCC----cccC----CCCCCCCC------------CCCCCCCCCHHHHHH
Q 035501 272 HSHASNNVTD-------GLNGFDVGQS-SQESY----FHTG----DRGYHKLW------------DSRLFNYANWEVLRF 323 (732)
Q Consensus 272 ~NH~~~~~~~-------~~~~~d~~~~-~~~~y----f~~~----~~g~~~~w------------~~~~ln~~~p~v~~~ 323 (732)
+||++..... +...+++..+ +.-.| |+.+ +.+....| +..+||.++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 9999853211 1111111100 00111 2221 11112223 336899999999999
Q ss_pred HHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhh--------hcceEEEeeccC-CCCCC-CcccccCCcee
Q 035501 324 LLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNE--------YFNATVIAEDVS-GMPGL-GSPVSMGGIGF 393 (732)
Q Consensus 324 i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~--------~~~~~~iaE~~~-~~~~~-~~~~~~~g~gF 393 (732)
|++-|.+.++ .||-|||.|+++||...+- ..+...+.. .-+.+++-|... +-..+ +..+...|.--
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~Di---~~I~~~l~nLnsD~f~s~srpfi~qEVID~GgE~v~~~dY~g~G~~T 272 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPGDI---KAILDKLHNLNSDWFPSGSKPFIYQEVIDLGGEPIKSSDYFGNGRVT 272 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChHHH---HHHHHHHhhcccccccCCCCceehhhhhhcCCceeecccccCCceee
Confidence 9999999999 8999999999999953221 111111111 112666767543 11111 11111112111
Q ss_pred cccccccccHHHHHHHhcCCCCCccHHHHHHHhh--cCcCcccceecccccccccccchhhHhhhccHhhhhccccCCCC
Q 035501 394 DYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLT--NRRYTEKCISYAESHDQAIVGDKTIAFLLMDQEMYTGMSSLTDA 471 (732)
Q Consensus 394 d~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~--~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~d~~~y~~~~~~~~~ 471 (732)
.|+ |.+.+-..+++... +.-|...-. .....+++++|++|||+.|-.....+. -..|
T Consensus 273 eF~----f~~~ig~~~r~~~~----~kyL~nwG~~wGf~~s~~~L~FvDNHDNQR~~gagga~----VltY--------- 331 (504)
T KOG2212|consen 273 EFK----FGAKLGTVIRKWNK----MKYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGAS----VLTY--------- 331 (504)
T ss_pred eee----chHHHHHHHhcchh----HHHHHhcCCccCcCCCcceEEEeccCcccccCCCCcce----EEEe---------
Confidence 222 22233333333211 111111000 013456899999999998843211000 0011
Q ss_pred CcchHHHHHHHHHHHHHHHHcC-CCCeEeecCCCCCCCCccCCCCCCCc------CccccccCCCccCCcccccchHHHH
Q 035501 472 SPTIERGITLHKMIHFITMALG-GEGYLNFMGNEFGHPEWIDFPREGNE------WSYEKCRRQWNLVDADHLRYKFMNA 544 (732)
Q Consensus 472 ~~~~~~~~~~~kla~~ll~t~p-G~P~liy~G~E~G~~~~~d~p~~g~~------~s~~~~~~~W~~~~~~~~~~~~l~~ 544 (732)
...++.|||.+||+++| |.|-+ ..---|-..+|...+..+.. ++...|.--|-... --.
T Consensus 332 -----K~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvCEH--------RWr 397 (504)
T KOG2212|consen 332 -----KDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVCEH--------RWR 397 (504)
T ss_pred -----cchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCCCCcceecceeCCCCcccCceeeec--------hHH
Confidence 13567899999999998 55522 22222222222111110000 00111111222110 124
Q ss_pred HHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEeC-cEEEEEECCCCCccccEEEecCCCCcEEEEecCCCC
Q 035501 545 FGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFERG-DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAW 617 (732)
Q Consensus 545 f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R~-~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~ 617 (732)
-++.|..+|.. -.+.+...+-+.+.+-|+|.|+ .-++++|...-.-...++.++| +|+|.++++.+..
T Consensus 398 qI~~Mv~FrnA----V~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LP-AGtYCDviSG~~~ 466 (504)
T KOG2212|consen 398 QIRNMVNFRNA----VDGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLP-AGTYCDVISGDKI 466 (504)
T ss_pred HHHHHHhhhhh----cCCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCC-CCceeeeeccccc
Confidence 47889999976 2233333344455678999996 5788888876534445677887 8999999986543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.88 E-value=1.2e-22 Score=197.25 Aligned_cols=92 Identities=23% Similarity=0.368 Sum_probs=82.3
Q ss_pred EecCCCCC--CCCCCChHhHHHhhhhHHHHCCCCEEEECCccccccc--CCCCcccCccccCCCCCCCHHHHHHHHHHHH
Q 035501 185 AHVGMSSS--EPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYY--ASFGYHVTNFFAASSRSGTPEDLKYLIDKAH 260 (732)
Q Consensus 185 ~hv~~~~~--~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~--~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H 260 (732)
+.++.|.. ..+.|+|+++++ +|+|||+||||+|||+||++++.. .+|||++.||++++|+|||.+||++||++||
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~-~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIE-KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHH-HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 45666643 334689999984 799999999999999999998753 7899999999999999999999999999999
Q ss_pred HCCCEEEEeecccccCC
Q 035501 261 SLGLRVLVDIVHSHASN 277 (732)
Q Consensus 261 ~~GI~VIlDvV~NH~~~ 277 (732)
++||+||||+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999975
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.84 E-value=9.7e-21 Score=167.28 Aligned_cols=96 Identities=59% Similarity=1.222 Sum_probs=84.8
Q ss_pred EeCCcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCC-CCCCCCCCCceEEEEEEe-CCeEeeccccc
Q 035501 62 REDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDS-GGKPAIPHGSRVKFRFKH-DGVFIDRIPAW 139 (732)
Q Consensus 62 ~~~~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~-~g~~~~~~g~~Y~~~~~~-~g~~~~~~dpy 139 (732)
..++|++||+|||+|++|+|+||||+|+...++|++.++|+|+++||++ +|...++||+.|+|+|.. +|++.+++|||
T Consensus 2 ~~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPy 81 (99)
T cd02854 2 QEDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAW 81 (99)
T ss_pred cCCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcc
Confidence 3567899999999999999999999999888999998899999999983 466678999999999998 89999999999
Q ss_pred ccccccCCCCCCCCcceeee
Q 035501 140 IKYATVDSSRFGAPYDGVYW 159 (732)
Q Consensus 140 a~~~~~~~~~~~~~~~~~~~ 159 (732)
|++++++|.+. .+++++|
T Consensus 82 A~~~~~~~~~~--~~~~~~~ 99 (99)
T cd02854 82 IKYVTQDKETA--LYDGVFW 99 (99)
T ss_pred eeEEEeCCCCc--ceeeEEC
Confidence 99999999743 4566654
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.83 E-value=3.2e-19 Score=194.94 Aligned_cols=317 Identities=22% Similarity=0.277 Sum_probs=203.0
Q ss_pred HHHHHHHHHh-cCCCHHHHHcccccCCcEEeCCc-EEEEEEcCCCC-------eEEEEe-------ccCCCCC------c
Q 035501 34 YVDQKLLLEK-HEGGLEEFAKGYLEFGFNREDGG-IVYREWAPAAK-------EAQLIG-------DFNGWDG------S 91 (732)
Q Consensus 34 ~~~~~~~~~~-~~~~~~~~~~~~~~lG~~~~~~g-~~f~~wAP~A~-------~V~L~g-------dfn~w~~------~ 91 (732)
+.++.+.|+. ....+++-..-...||||+..+| |.|-.|.|.-. .|+|.. ||..-+. .
T Consensus 3 Ll~Wa~~v~~s~~~~Fe~aq~~a~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~ 82 (811)
T PF14872_consen 3 LLAWAAQVEHSDATYFEKAQQLATRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRD 82 (811)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEE
Confidence 4567777774 34445555555789999999888 89999999754 788764 3322211 2
Q ss_pred ccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-CCeEeecccccccccccCCCCCCCCcc----eeeeCCCCCCC
Q 035501 92 NHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH-DGVFIDRIPAWIKYATVDSSRFGAPYD----GVYWDPPPSER 166 (732)
Q Consensus 92 ~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~-~g~~~~~~dpya~~~~~~~~~~~~~~~----~~~~~~~~~~~ 166 (732)
.+++.+.+.=.| ..+.|....+.-..|+.|..+... +|++.-..||.| .+.||- +-+||....+.
T Consensus 83 ~~~L~~qgey~W-gVv~GlraGtr~q~GsfYwLry~d~~~~~~~I~DpLa---------ySlPyGvfaPAElYDl~~lq~ 152 (811)
T PF14872_consen 83 RLPLERQGEYHW-GVVAGLRAGTRDQAGSFYWLRYRDQDGEVQIIRDPLA---------YSLPYGVFAPAELYDLERLQR 152 (811)
T ss_pred EEeeccccceee-ehhhccCCCCcccccceEEEEEccCCCCeEEeccccc---------ccCcccccChHHhhchHhHhh
Confidence 356666555577 446665544455789999988876 666543344443 333321 12333321000
Q ss_pred ------C-CC-----CCCCCC-CCCCceEEEEecCCCCCCCCCCChHhHHHhhhhHHHH---------------CCCCEE
Q 035501 167 ------Y-EF-----KYPRPP-KPKAPRIYEAHVGMSSSEPRVNSYREFADDVLPRIRA---------------NNYNTV 218 (732)
Q Consensus 167 ------~-~w-----~~~~~~-~~~~~~IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~---------------LGvt~I 218 (732)
| .- +.+.++ -+.+..|-++||+..|.+ ||+.|+++ .-..|.+ .||++|
T Consensus 153 ~RaD~~Yf~~~~a~~~~~~~~rv~~P~nILQiHv~TAsp~---GtlaGLT~-iyqria~K~~~g~pLtp~E~ny~GYDAv 228 (811)
T PF14872_consen 153 RRADLDYFEATGAADPSDGIPRVPAPRNILQIHVGTASPE---GTLAGLTR-IYQRIADKLAAGEPLTPAEENYVGYDAV 228 (811)
T ss_pred hhhhHHHHHhhccccCCCCCcccCCCceeEEEecCCCCCC---cchHHHHH-HHHHHHHHHhcCCCCChhHHhcccccce
Confidence 0 00 001122 356679999999999877 57888774 3333332 799999
Q ss_pred EECCcccc-------------------------------------------cccCCCCcccC--ccccCCCC-CCC--HH
Q 035501 219 QLMAVMEH-------------------------------------------SYYASFGYHVT--NFFAASSR-SGT--PE 250 (732)
Q Consensus 219 ~L~Pi~e~-------------------------------------------~~~~~~GY~~~--~y~av~~~-~Gt--~~ 250 (732)
|||||-.. |...+||||+. ..-+++|. ++| |+
T Consensus 229 QLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPD 308 (811)
T PF14872_consen 229 QLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPD 308 (811)
T ss_pred eeeccCCcceeccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcH
Confidence 99999631 12468999974 33445554 344 89
Q ss_pred HHHHHHHHHHH---CCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 035501 251 DLKYLIDKAHS---LGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSN 327 (732)
Q Consensus 251 dfk~LV~~~H~---~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~ 327 (732)
||-.||.+||. ..|.||+|+||.|.-+....-++ ..|+..... + +-++|+.+|.||..+++.
T Consensus 309 ElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn---------~~flkGPnM-----Y-GQdlnhq~P~VRAILLEm 373 (811)
T PF14872_consen 309 ELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLN---------RRFLKGPNM-----Y-GQDLNHQNPVVRAILLEM 373 (811)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhh---------hhhccCCcc-----c-cccccccChHHHHHHHHH
Confidence 99999999998 56999999999999665322222 234433221 1 247999999999999999
Q ss_pred HHHHHHhcCceEEeecCccccccccccc-----cchhhhhHhhhcc--------eEEEeeccCCCC
Q 035501 328 LRWWIEEFKFDGFRFDGVTSMLYHHHGI-----NMSFTGNYNEYFN--------ATVIAEDVSGMP 380 (732)
Q Consensus 328 l~~Wl~e~giDGfR~D~~~~~~~~~~g~-----~~~f~~~~~~~~~--------~~~iaE~~~~~~ 380 (732)
-|.=++ +|+||+|+|++...-+.+.-. ...|+.++...+. .++|-|+-..+|
T Consensus 374 QRRK~n-~GaDGIRVDGgQDFk~fnplt~~ve~DD~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP 438 (811)
T PF14872_consen 374 QRRKIN-TGADGIRVDGGQDFKFFNPLTGRVEYDDAYLLAMSDVVQEIGGARRLPFTIFEDGRPWP 438 (811)
T ss_pred HHhhcc-cCCceeEecccccceeecccccccccchHHHHHHHHHHhhccccceeEEEEecCCCcCC
Confidence 999998 899999999998654332110 1245555443322 788999765444
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.70 E-value=2.6e-17 Score=202.80 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=82.4
Q ss_pred ceEEEEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHH
Q 035501 180 PRIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKA 259 (732)
Q Consensus 180 ~~IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~ 259 (732)
..+|-++... .+||.+++ ++||||++||||+|||+||++....++|||+++||+.|+|.|||.++|++||++|
T Consensus 744 ~atyrlq~~~------~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFHK------DFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeCC------CCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 3577777642 25899987 5899999999999999999997666889999999999999999999999999999
Q ss_pred HHCCCEEEEeecccccCC
Q 035501 260 HSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 260 H~~GI~VIlDvV~NH~~~ 277 (732)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999995
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.64 E-value=1e-15 Score=136.43 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=79.1
Q ss_pred CCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCC----cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-CCeE
Q 035501 58 FGFNREDGGIVYREWAPAAKEAQLIGDFNGWDG----SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH-DGVF 132 (732)
Q Consensus 58 lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~----~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~-~g~~ 132 (732)
||+++..++++|+||||+|++|.|++ |++|.. ..++|++.++|+|+++|++. .+|.+|+|++.. .+..
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~------~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGD------LEGYYYLYEVKVYKGET 73 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCc------cCCcEEEEEEEEeceEE
Confidence 79999999999999999999999998 777751 46899998899999999975 789999999987 4667
Q ss_pred eecccccccccccCCCCCCCCcceeeeCCC
Q 035501 133 IDRIPAWIKYATVDSSRFGAPYDGVYWDPP 162 (732)
Q Consensus 133 ~~~~dpya~~~~~~~~~~~~~~~~~~~~~~ 162 (732)
...+||||+.+..+.. .|++.|++
T Consensus 74 ~~~~DPyA~~~~~~~~------~s~i~d~~ 97 (100)
T cd02860 74 NEVVDPYAKALSANGE------RSVDLDDK 97 (100)
T ss_pred EEEcCcccEeEeeCCC------ceEECChH
Confidence 7889999999988764 56777764
No 44
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.64 E-value=5.5e-16 Score=133.79 Aligned_cols=79 Identities=30% Similarity=0.716 Sum_probs=66.8
Q ss_pred cCCcEEeCC--cEEEEEEcCCCCeEEEEeccCC-CCCccccee-eCCCCEEEEEecCCCCCCCCCCC-ceEEEEEEe-CC
Q 035501 57 EFGFNREDG--GIVYREWAPAAKEAQLIGDFNG-WDGSNHKME-RNEFGVWSISIPDSGGKPAIPHG-SRVKFRFKH-DG 130 (732)
Q Consensus 57 ~lG~~~~~~--g~~f~~wAP~A~~V~L~gdfn~-w~~~~~~m~-~~~~GvW~i~ip~~~g~~~~~~g-~~Y~~~~~~-~g 130 (732)
+||+++.++ +++|++|||+|++|+|++++++ |....++|+ +.++|+|++++++. +.+| .+|+|+|.. +|
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~-----~~~g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD-----LPPGGYYYKYRIDGDDG 75 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC-----GTTTT-EEEEEEEETTT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC-----cCCCCEEEEEEEEeCCC
Confidence 699999875 8999999999999999999998 777889999 58899999999953 4677 599999998 55
Q ss_pred eEeecccccc
Q 035501 131 VFIDRIPAWI 140 (732)
Q Consensus 131 ~~~~~~dpya 140 (732)
.....+||||
T Consensus 76 ~~~~~~DPYA 85 (85)
T PF02922_consen 76 ETPEVVDPYA 85 (85)
T ss_dssp EEEEET-TT-
T ss_pred cEEEEeCCCC
Confidence 8888999997
No 45
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.54 E-value=3.9e-14 Score=127.44 Aligned_cols=92 Identities=30% Similarity=0.669 Sum_probs=79.1
Q ss_pred HHcccccCCcEEeC----CcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCC-CCEEEEEecCCCCCCCCCCCceEEEE
Q 035501 51 FAKGYLEFGFNRED----GGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNE-FGVWSISIPDSGGKPAIPHGSRVKFR 125 (732)
Q Consensus 51 ~~~~~~~lG~~~~~----~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~-~GvW~i~ip~~~g~~~~~~g~~Y~~~ 125 (732)
+...+..||+|+.+ ++++||+|||+|++|+|+++||+|....++|++.+ .|+|++++++. .+|..|+|+
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~------~~~~~Y~~~ 76 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGL------GEGELYKYE 76 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCC------CCCCEEEEE
Confidence 34567789999987 88999999999999999999999976677999876 89999999964 678889999
Q ss_pred EEe-CCeEeecccccccccccCCC
Q 035501 126 FKH-DGVFIDRIPAWIKYATVDSS 148 (732)
Q Consensus 126 ~~~-~g~~~~~~dpya~~~~~~~~ 148 (732)
+.. +|...+..|||++.+.+++.
T Consensus 77 v~~~~g~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 77 ILGADGHLPLKADPYAFYSELRPG 100 (106)
T ss_pred EECCCCCEEEeeCCCceeeEeCCC
Confidence 987 45667889999999888775
No 46
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.54 E-value=1.9e-14 Score=128.91 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=67.5
Q ss_pred cCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCC-CcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-------
Q 035501 57 EFGFNREDGGIVYREWAPAAKEAQLIGDFNGWD-GSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH------- 128 (732)
Q Consensus 57 ~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~-~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~------- 128 (732)
+||+++.++|++|+||||+|++|.|++ |+++. ...++|++.++|+|++++++. .+|.+|+|+|..
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~------~~g~~Y~y~i~g~~~p~~~ 73 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGI------KAGQRYGFRVHGPYDPERG 73 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCC------CCCCEEEEEECCccCcccC
Confidence 589999999999999999999999998 66554 456899988899999999975 689999999975
Q ss_pred --CCeEeeccccccccccc
Q 035501 129 --DGVFIDRIPAWIKYATV 145 (732)
Q Consensus 129 --~g~~~~~~dpya~~~~~ 145 (732)
.+.....+||||+.++.
T Consensus 74 ~~~~~~~~~~DPYA~~~~~ 92 (103)
T cd02856 74 LRFNPAKLLLDPYARALDG 92 (103)
T ss_pred cccCCCeEEecCCcceEcC
Confidence 12224568888887754
No 47
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.9e-14 Score=158.14 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=75.4
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
||.... ..||||++|||.|+|++|||.....+.||||++|+..|+|.+|+.+.|.+||.++|++||++|+|||+||++-
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 577655 5799999999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred C
Q 035501 278 N 278 (732)
Q Consensus 278 ~ 278 (732)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 6
No 48
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.42 E-value=5e-13 Score=123.01 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=66.9
Q ss_pred CcEEeCCcEEEEEEcCCCCeEEEEeccCCCCC----cccceeeCC---CCEEEEEecCCCCCCCCCCCceEEEEEEe---
Q 035501 59 GFNREDGGIVYREWAPAAKEAQLIGDFNGWDG----SNHKMERNE---FGVWSISIPDSGGKPAIPHGSRVKFRFKH--- 128 (732)
Q Consensus 59 G~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~----~~~~m~~~~---~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~--- 128 (732)
|+++.++|++|+||||+|++|+|++ |++|+. ..++|.+.+ +|+|+++|++. .+|.+|+|+|..
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~------~~g~~Y~y~v~g~~~ 73 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGL------KPGQLYGYRVDGPFE 73 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCC------CCCCEEEEEECCCCC
Confidence 7899999999999999999999999 887652 256787544 79999999975 789999999983
Q ss_pred --CCeEee----cccccccccccCC
Q 035501 129 --DGVFID----RIPAWIKYATVDS 147 (732)
Q Consensus 129 --~g~~~~----~~dpya~~~~~~~ 147 (732)
.|.+++ .+||||+.+..+.
T Consensus 74 p~~g~~~~~~~~~~DPYA~a~~~~~ 98 (119)
T cd02852 74 PEQGHRFDPSKVLLDPYAKAVSGDE 98 (119)
T ss_pred CCcccccCCCcEEECCCcCeEcCcc
Confidence 566655 7899998875543
No 49
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.41 E-value=8e-13 Score=114.06 Aligned_cols=84 Identities=27% Similarity=0.471 Sum_probs=66.7
Q ss_pred CcEEeC-CcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEeCCeEeeccc
Q 035501 59 GFNRED-GGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDGVFIDRIP 137 (732)
Q Consensus 59 G~~~~~-~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~~~~~d 137 (732)
|+++.. ++++|+||||+|++|.|++. + ...++|++.++|+|++++++ + .|..|+|++. ++ ...+|
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~---~~~~~m~~~~~G~W~~~v~~------~-~g~~Y~y~v~-~~--~~~~D 66 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D---GEEIPMQRDGDGWFEAEVPG------A-AGTRYRYRLD-DG--TPVPD 66 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C---CCcccCccCCCcEEEEEeCC------C-CCCeEEEEEC-CC--cCCCC
Confidence 788886 79999999999999999983 2 24578998899999999996 4 6889999996 23 46799
Q ss_pred ccccccccCCCCCCCCcceeeeCC
Q 035501 138 AWIKYATVDSSRFGAPYDGVYWDP 161 (732)
Q Consensus 138 pya~~~~~~~~~~~~~~~~~~~~~ 161 (732)
||+++....+.. .|+++||
T Consensus 67 P~a~~~~~~~~~-----~s~v~~~ 85 (85)
T cd02853 67 PASRFQPEGVHG-----PSQVVDP 85 (85)
T ss_pred CccccCCCCCCC-----CeEeeCc
Confidence 999986554432 4667654
No 50
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.41 E-value=2.9e-13 Score=162.61 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCC----CHHHHHHHHHHHHHC-CCEEEEee
Q 035501 196 VNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSG----TPEDLKYLIDKAHSL-GLRVLVDI 270 (732)
Q Consensus 196 ~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~G----t~~dfk~LV~~~H~~-GI~VIlDv 270 (732)
.|+|.+.. ++|+|||+||||.||||||++-.. +++.|++.||+.++|.|| +.++|++||+++|++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 38888875 689999999999999999997543 678999999999999994 899999999999997 99999999
Q ss_pred cccccCCCCCCC
Q 035501 271 VHSHASNNVTDG 282 (732)
Q Consensus 271 V~NH~~~~~~~~ 282 (732)
|+|||+.++.|-
T Consensus 206 V~NHTa~ds~Wl 217 (1464)
T TIGR01531 206 VFNHTANNSPWL 217 (1464)
T ss_pred eecccccCCHHH
Confidence 999999998553
No 51
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.30 E-value=5.9e-12 Score=111.02 Aligned_cols=89 Identities=33% Similarity=0.612 Sum_probs=71.4
Q ss_pred EEEeccCCCcEEEEEeCc-----EEEEEECCCCCccccEEEecCCCCcEEEEecCCCCcccCCCCcCCccccccCCCCCC
Q 035501 565 IVSSTNEEDKVIVFERGD-----LVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIP 639 (732)
Q Consensus 565 ~~~~~~~~~~vlaf~R~~-----~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~ 639 (732)
|+.+.+.+++|+||.|.+ ++||+||+++..+.+|++++|.+|+|+++|||++..|||++...... +.
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~~-v~------- 72 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSGE-VT------- 72 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETSE-EE-------
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCce-EE-------
Confidence 677888889999999953 99999999975688999999999999999999999999987632211 11
Q ss_pred CccccccCCCCcEEEEEeCcceEEEEEEe
Q 035501 640 GVAETNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 640 ~~~~~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
. ...+.++|+|||++++||+.+
T Consensus 73 ----~---~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 73 ----V---DSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ----E---ETTSEEEEEESTTEEEEEEEE
T ss_pred ----E---eeCCEEEEEECCCEEEEEEEc
Confidence 1 122459999999999999764
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.23 E-value=1.3e-11 Score=146.66 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=72.4
Q ss_pred cccccCCcEEeCCcEEEEEEcCCCCeEEEEeccCCCCCcccceeeC-CCCEEEEEecCCCCCCCCCCCceEEEEEEeCCe
Q 035501 53 KGYLEFGFNREDGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERN-EFGVWSISIPDSGGKPAIPHGSRVKFRFKHDGV 131 (732)
Q Consensus 53 ~~~~~lG~~~~~~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~-~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~ 131 (732)
+.|+.||+|....|++|+||||+|++|+|+||||+ +..++|++. +.|+|+++|| . ..|+.|||+|..+|+
T Consensus 16 ~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~------~~g~~YKy~i~~~g~ 86 (726)
T PRK05402 16 DPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-R------KGPFDYRLRVTWGGG 86 (726)
T ss_pred CHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-C------CCCCCeEEEEEeCCc
Confidence 34889999998889999999999999999999995 677899974 6899999999 6 689999999988888
Q ss_pred Eeecccccccc
Q 035501 132 FIDRIPAWIKY 142 (732)
Q Consensus 132 ~~~~~dpya~~ 142 (732)
+..+.||||..
T Consensus 87 ~~~k~DPyaf~ 97 (726)
T PRK05402 87 EQLIDDPYRFG 97 (726)
T ss_pred eeEeccccccC
Confidence 89999999974
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.17 E-value=1.3e-10 Score=100.18 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEeCCeEeeccccccccc
Q 035501 64 DGGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDGVFIDRIPAWIKYA 143 (732)
Q Consensus 64 ~~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~~~~~dpya~~~ 143 (732)
++.++|++|||.|++|+|+++||+| ..++|++.++|+|+++++.. ++..|.|++..+|. ...||+++..
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~--~~~~m~~~~~G~W~~~v~~l-------~~g~Y~Y~~~vdg~--~~~DP~s~~~ 73 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGA--GSHPMTKDEAGVWSVTTGPL-------APGIYTYSFLVDGV--RVIDPSNPTT 73 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCC--ccEeCeECCCeEEEEEECCC-------CCcEEEEEEEECCe--EecCCCCCce
Confidence 4579999999999999999999854 46899998899999999653 45567777766773 3467776544
Q ss_pred c
Q 035501 144 T 144 (732)
Q Consensus 144 ~ 144 (732)
.
T Consensus 74 ~ 74 (85)
T cd02858 74 K 74 (85)
T ss_pred e
Confidence 3
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.05 E-value=8.3e-10 Score=94.53 Aligned_cols=70 Identities=27% Similarity=0.496 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCc-eEEEEEEeCCeEeecccccccccc
Q 035501 66 GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGS-RVKFRFKHDGVFIDRIPAWIKYAT 144 (732)
Q Consensus 66 g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~-~Y~~~~~~~g~~~~~~dpya~~~~ 144 (732)
.++|++|||.|++|+|+|+||+|. .++|++.+.|+|+++++- ..|. .|+|.+ +|.+. ..||.+....
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~l-------~~G~y~Ykf~v--dg~~~-~~DP~~~~~~ 70 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVEL-------RPGRYEYKFVV--DGEWV-IVDPNAAAYV 70 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEeC-------CCCcEEEEEEE--CCEEe-eCCCCCCcee
Confidence 489999999999999999999997 579999888999999983 4566 666666 67653 4688776655
Q ss_pred cCC
Q 035501 145 VDS 147 (732)
Q Consensus 145 ~~~ 147 (732)
.++
T Consensus 71 ~~~ 73 (82)
T cd02861 71 DDG 73 (82)
T ss_pred cCC
Confidence 554
No 55
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.66 E-value=6.4e-08 Score=84.08 Aligned_cols=83 Identities=25% Similarity=0.293 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCcCCceEEEe--ccCCCcEEEEEe----CcEEEEEECCCCCccccEEEecCCCCcEEEEecCCCCc
Q 035501 545 FGRAMNELDDKFPFLASTKQIVSS--TNEEDKVIVFER----GDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDSDAWG 618 (732)
Q Consensus 545 f~r~Li~lR~~~~aL~~g~~~~~~--~~~~~~vlaf~R----~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~sd~~~ 618 (732)
|||+||+||+++|+|+.|...... ...++.++++.| +.++|++||+++ ..+++ ....++.++.++...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~----~~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE----PVTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC----cEEcc--CCCCCeEEEcCCCcc
Confidence 799999999999999999432222 134556888888 259999999987 23333 355677787766543
Q ss_pred ccCCCCcCCccccccCCCCCCCccccccCCCCcEEEEEeCcceEEEE
Q 035501 619 FGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRTSVVY 665 (732)
Q Consensus 619 ~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s~~Vl 665 (732)
+++ .++|||.+++||
T Consensus 75 ~~~--------------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG--------------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E----------------------------------EEEE-TTEEEEE
T ss_pred ccc--------------------------------CceECCCEEEEC
Confidence 322 488999999986
No 56
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.62 E-value=1.3e-07 Score=80.34 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCC-CCceEEEEEEe
Q 035501 65 GGIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIP-HGSRVKFRFKH 128 (732)
Q Consensus 65 ~g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~-~g~~Y~~~~~~ 128 (732)
++++|++|||+|++|.|+++|++| ...++|++.++|+|++.++.. . .+..|+|++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~------~~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLP------SPGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCC------CCCCeEEEEEEeC
Confidence 579999999999999999999874 357899998899999999975 4 78899999864
No 57
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.54 E-value=1.5e-07 Score=102.90 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=71.3
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCC------HHHHHHHHHHHH-HCCCEEEEe
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGT------PEDLKYLIDKAH-SLGLRVLVD 269 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt------~~dfk~LV~~~H-~~GI~VIlD 269 (732)
|.|..-. ++|..++++|||.|+++|+++... ++.-|.+.|...++|.+.. .+++++||.+++ +.||.+|.|
T Consensus 19 G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~-S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 19 GPFSDWE-KHLKVISEKGYNMIHFTPLQERGE-SNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CCHhHHH-HHHHHHHHcCCcEEEecccccCCC-CCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 6666664 689999999999999999998643 4557999999999998754 479999999995 799999999
Q ss_pred ecccccCCCCCC
Q 035501 270 IVHSHASNNVTD 281 (732)
Q Consensus 270 vV~NH~~~~~~~ 281 (732)
||+|||+.++.|
T Consensus 97 vV~NHtA~nS~W 108 (423)
T PF14701_consen 97 VVLNHTANNSPW 108 (423)
T ss_pred EeeccCcCCChH
Confidence 999999998754
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.31 E-value=3.9e-06 Score=78.31 Aligned_cols=122 Identities=18% Similarity=0.299 Sum_probs=82.6
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL 283 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~ 283 (732)
++.+++||++|+|+|.+..=- .+.+-|-|+.-...+|.++ .+-|+++|++||++||+|+.=+-++ .-... .
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~----h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~--~- 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKC----HGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDA--A- 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEccc----ccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHH--H-
Confidence 356899999999999875421 1123467777777888888 7889999999999999999766655 21110 0
Q ss_pred CCCCCCCCCCCCCcccCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecC
Q 035501 284 NGFDVGQSSQESYFHTGDRGY--------HKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDG 344 (732)
Q Consensus 284 ~~~d~~~~~~~~yf~~~~~g~--------~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~ 344 (732)
...+.|+..+.+|. .+.|-..++| . ..+++++..++--++.|.+||+=||.
T Consensus 74 -------~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 74 -------ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -------HhCCceeeECCCCCCcCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 11233443332222 1123334444 3 45689999999999999999998873
No 59
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.23 E-value=5.8e-06 Score=88.80 Aligned_cols=138 Identities=14% Similarity=0.253 Sum_probs=78.9
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCC--CHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSG--TPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~G--t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
..+ ++.|+.|+++|+|+|.+-=.........--+.|...+......+ +-|=|+.||++||++||+|.-=+.++....
T Consensus 19 ~~~-~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 19 EQI-DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 444 46899999999999986432211000000111111111111111 257799999999999999987764443322
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCc
Q 035501 278 NVTDGLNGFDVGQSSQESYFHTGDRGYHKL-----WDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 278 ~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~-----w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~ 345 (732)
.... .. ...+.++.....+.... -+..-||-.+|+||+||++.++--++.|.|||+-||-.
T Consensus 98 ~~~~----~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 98 DVSH----IL---KKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred chhh----hh---hcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 1100 00 01111221111111100 12235899999999999999999999999999999943
No 60
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.23 E-value=6.4e-05 Score=85.49 Aligned_cols=264 Identities=18% Similarity=0.232 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc--ccCCCCCCCCCCC--CCC------CCCCCCCcccCCCCCCCCCCCCCCCCCCHH
Q 035501 250 EDLKYLIDKAHSLGLRVLVDIVHS--HASNNVTDGLNGF--DVG------QSSQESYFHTGDRGYHKLWDSRLFNYANWE 319 (732)
Q Consensus 250 ~dfk~LV~~~H~~GI~VIlDvV~N--H~~~~~~~~~~~~--d~~------~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~ 319 (732)
+.++++.+.||++||++|-|+.+- +-|.+.......| +.. .+.++.+|... ...|+.+.+|+..=.
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~----GQ~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET----GQLWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc----cCcCCCCCcCHHHHH
Confidence 345667778999999999999863 3333321111222 111 34556677542 357888888764311
Q ss_pred H--HHHHHHHHHHHHHhcCceEEeecCcccccc-c--ccc----c--------cchhhhhHh-hhcceEEEeeccCCCCC
Q 035501 320 V--LRFLLSNLRWWIEEFKFDGFRFDGVTSMLY-H--HHG----I--------NMSFTGNYN-EYFNATVIAEDVSGMPG 381 (732)
Q Consensus 320 v--~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~-~--~~g----~--------~~~f~~~~~-~~~~~~~iaE~~~~~~~ 381 (732)
- -+..++-+++=++ .+|++|+|.+--+.. + ..+ . ..++...+. +..++.+|||+....|.
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p~~~l~~~l~~e~~~~~vigEDLG~vp~ 351 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGPGKDLFEAVKEELGDLPIIAEDLGVITP 351 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeecCCHHHHHHHHHHHhCCCCEEEeECCCCCH
Confidence 1 2345555665555 789999998744310 0 111 0 112332222 23458899998865544
Q ss_pred CCccc-ccCC-ceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhc-c
Q 035501 382 LGSPV-SMGG-IGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLM-D 458 (732)
Q Consensus 382 ~~~~~-~~~g-~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~-d 458 (732)
-.+.. ...| .|+ +.- -| -+...... ......++..+|.|+.+||++.+. +++-. |
T Consensus 352 ~V~~~l~~~gi~g~--~Vl-~f-------~~~~~~~~--------~~~p~~~~~~~v~~~~THD~~Tl~----gWw~~~~ 409 (497)
T PRK14508 352 DVEELRDRFGFPGM--KIL-QF-------AFDGDSDN--------PYLPHNYPRNSVVYTGTHDNDTTV----GWWESLD 409 (497)
T ss_pred HHHHHHHHcCCCcc--EEE-Ee-------cCCCCCCC--------CCCCcCCCCCeEEECCCCCCHHHH----HHHhCCC
Confidence 33321 1111 111 110 00 00000000 001135688999999999998652 33311 1
Q ss_pred HhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCC--ccCCCCCCC-cCccccccCCCccCCcc
Q 035501 459 QEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPE--WIDFPREGN-EWSYEKCRRQWNLVDAD 535 (732)
Q Consensus 459 ~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~--~~d~p~~g~-~~s~~~~~~~W~~~~~~ 535 (732)
...-......-...+. ...+..+.-+++.++..=+++-+-|=.|..+ .++.|...+ +|.+ |+..+..+
T Consensus 410 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~~~r~N~PGt~~~nW~~---Rl~~~~~~-- 480 (497)
T PRK14508 410 PEERKRVADYLGRSSE----EEIHWALIRLALASVADLAILPMQDLLGLGSEARMNTPGTVGGNWSW---RLLPDDLT-- 480 (497)
T ss_pred HHHHHHHHHHhccCCc----hhHHHHHHHHHhcCCchheeeeHHHHhCCCCcCCCcCCCCCCCCCCc---cCCccccC--
Confidence 1110000000000010 1233344445666666656666677677765 667765432 3443 34444332
Q ss_pred cccchHHHHHHHHHHHHHH
Q 035501 536 HLRYKFMNAFGRAMNELDD 554 (732)
Q Consensus 536 ~~~~~~l~~f~r~Li~lR~ 554 (732)
..+.+.++.|+++..
T Consensus 481 ----~~~~~~l~~l~~~~~ 495 (497)
T PRK14508 481 ----DDLADRLRELTELYG 495 (497)
T ss_pred ----HHHHHHHHHHHHHhC
Confidence 245677777776654
No 61
>PLN02950 4-alpha-glucanotransferase
Probab=98.12 E-value=0.00024 Score=85.98 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=81.2
Q ss_pred cEEEEEEcCC---CCeEEEEec---cCCCCC-cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe-CCeEeeccc
Q 035501 66 GIVYREWAPA---AKEAQLIGD---FNGWDG-SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH-DGVFIDRIP 137 (732)
Q Consensus 66 g~~f~~wAP~---A~~V~L~gd---fn~w~~-~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~-~g~~~~~~d 137 (732)
.++|++-+|. -++|+|+|+ ..+|+. ...+|.......|++.+.-..+ ...-.|||.+.. +|.+.....
T Consensus 154 ~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~----~~~~EYKyv~~~~~g~v~WE~g 229 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKS----DFPIKYKYALQTAEGLVSLELG 229 (909)
T ss_pred eEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCC----CceEEEEEEEEcCCCceEEeeC
Confidence 4899999984 678999983 447875 4577876678899999863211 123589998876 554432211
Q ss_pred ccccccccCCCCCCCCcceeeeCCCCCCCCCCCCCCCCCCCCceEEEEecCCCCCC--CCCCChHhHHHhhhhHHHHCCC
Q 035501 138 AWIKYATVDSSRFGAPYDGVYWDPPPSERYEFKYPRPPKPKAPRIYEAHVGMSSSE--PRVNSYREFADDVLPRIRANNY 215 (732)
Q Consensus 138 pya~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~IYE~hv~~~~~~--~~~g~~~~~~~~~LdyLk~LGv 215 (732)
+- +....|...... ..++..+. ..+.. +.....-++ +|+-+.-.. -++|+|.++. +.+|.+++.|.
T Consensus 230 ~N--R~~~~p~~~~~~-~~~~~~~~----~~~~~--~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~ 297 (909)
T PLN02950 230 VN--RELSLDSSSGKP-PSYIVASD----GAFRE--MPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGL 297 (909)
T ss_pred CC--ceeecCcccCCc-eEEEeccc----ccccC--CCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCC
Confidence 11 111111110000 11121111 11111 111111122 333222222 3689998876 68999999999
Q ss_pred CEEEECCcccc
Q 035501 216 NTVQLMAVMEH 226 (732)
Q Consensus 216 t~I~L~Pi~e~ 226 (732)
+.|+|+||.+.
T Consensus 298 ~~~QilPl~~t 308 (909)
T PLN02950 298 HLVQLLPVNDT 308 (909)
T ss_pred CEEEECCCCCC
Confidence 99999999753
No 62
>PLN02635 disproportionating enzyme
Probab=98.06 E-value=5.3e-05 Score=86.30 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHCCCEEEEeec--ccccCCCCCCCCCCCCCC--------CCCCCCCcccCCCCCCCCCCCCCCCCCCHH
Q 035501 250 EDLKYLIDKAHSLGLRVLVDIV--HSHASNNVTDGLNGFDVG--------QSSQESYFHTGDRGYHKLWDSRLFNYANWE 319 (732)
Q Consensus 250 ~dfk~LV~~~H~~GI~VIlDvV--~NH~~~~~~~~~~~~d~~--------~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~ 319 (732)
+.++++-+.||++||++|-|+. .++-|.+.......|... .+.++.||... ...|+.+.+|+..=.
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHHH
Confidence 4567788889999999999999 455555432112222211 24567777543 357888887754311
Q ss_pred --HHHHHHHHHHHHHHhcCceEEeecCccccc-cc--ccc------------ccchhhhhHhh-hcceEEEeeccCCCCC
Q 035501 320 --VLRFLLSNLRWWIEEFKFDGFRFDGVTSML-YH--HHG------------INMSFTGNYNE-YFNATVIAEDVSGMPG 381 (732)
Q Consensus 320 --v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~-~~--~~g------------~~~~f~~~~~~-~~~~~~iaE~~~~~~~ 381 (732)
--+..++-+++=++ .+|++|+|.+--+. ++ +.| ...++...+.+ ..++.+|||+....+.
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~~~~~~~vIaEDLG~I~~ 377 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKKAVGKIDIIAEDLGVITE 377 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhheeeeccCCCCCCCCCeeeeCCHHHHHHHHHHHcCCCCEEEeeCCCCCH
Confidence 11344555555555 78999999874431 10 111 01233333333 2458999998864443
No 63
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=98.00 E-value=2.3e-05 Score=66.45 Aligned_cols=56 Identities=25% Similarity=0.458 Sum_probs=43.9
Q ss_pred cEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCc-eEEEEEEeCCeEe
Q 035501 66 GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGS-RVKFRFKHDGVFI 133 (732)
Q Consensus 66 g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~-~Y~~~~~~~g~~~ 133 (732)
-|+|+..+ .|++|+|+|+||+|.. .+||.+..+| |+++++- +.|. .|+|.+ +|.+.
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~L-------~~g~y~YkF~V--dg~w~ 59 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLRL-------PPGKYQYKFIV--DGEWR 59 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEEc-------CCCCEEEEEEE--CCEEE
Confidence 37899888 8999999999999986 6899998777 9999873 3452 455554 78764
No 64
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.98 E-value=1.3e-05 Score=90.23 Aligned_cols=97 Identities=20% Similarity=0.294 Sum_probs=60.4
Q ss_pred CceEEEEecCC--CCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCC-------CCcccCccccC----CCC
Q 035501 179 APRIYEAHVGM--SSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYAS-------FGYHVTNFFAA----SSR 245 (732)
Q Consensus 179 ~~~IYE~hv~~--~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~-------~GY~~~~y~av----~~~ 245 (732)
.-+|||-+--. |-..+.--+..-|+ +-.+-+|++|||..||-|-+.++..+. -||.-+|=|.+ ...
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptK 642 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTK 642 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BT
T ss_pred cchhhccccccccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCC
Confidence 34999976532 21122223456666 469999999999999999997665554 38888777665 457
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 246 SGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 246 ~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
|||.+||+.-|+++|+.||+||-|+|++...
T Consensus 643 YGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 643 YGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp TB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 9999999999999999999999999999874
No 65
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.80 E-value=1.8e-05 Score=90.47 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=31.8
Q ss_pred CCCCh-HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCC
Q 035501 195 RVNSY-REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRS 246 (732)
Q Consensus 195 ~~g~~-~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~ 246 (732)
++|+| .++. ..++.+++.|+..++|+|+.+.....++-|.+.+=|+.+|-|
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGG
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHH
Confidence 78999 6665 689999999999999999998766666789998888888766
No 66
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.72 E-value=0.0017 Score=81.58 Aligned_cols=260 Identities=15% Similarity=0.183 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHCCCEE--EEeeccc--ccCCCCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHH--H
Q 035501 250 EDLKYLIDKAHSLGLRV--LVDIVHS--HASNNVTDGLNGF--DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEV--L 321 (732)
Q Consensus 250 ~dfk~LV~~~H~~GI~V--IlDvV~N--H~~~~~~~~~~~~--d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v--~ 321 (732)
+.++++-+.|+++||+| |-|+.+- +-|.+.......| +...+.++.+|... ...|+.+.+|+..=.- -
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE----GQNWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc----cccCCCcCcCHHHHHhcCc
Confidence 45777888899999999 9999864 3333221111112 22335667777543 3578888877543211 1
Q ss_pred HHHHHHHHHHHHhcCceEEeecCcccccc-c--cccc-----------cchhhhhHh-hhc--ceEEEeeccCCCCCCCc
Q 035501 322 RFLLSNLRWWIEEFKFDGFRFDGVTSMLY-H--HHGI-----------NMSFTGNYN-EYF--NATVIAEDVSGMPGLGS 384 (732)
Q Consensus 322 ~~i~~~l~~Wl~e~giDGfR~D~~~~~~~-~--~~g~-----------~~~f~~~~~-~~~--~~~~iaE~~~~~~~~~~ 384 (732)
+..++-++.-++ ++|++|+|.+--+.. + ..+. ..++...+. +.. ++.+|||+....|.-.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~W~IP~~~~a~~G~~v~~P~~~l~~~l~~e~~r~~~~vIgEDLG~vp~~v~ 1085 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERLFEVPQGASAKEGAYLKGPGEELFGQVALESQRAQCPVIGEDLGTIPSGVR 1085 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHheeCCCCCCCCCCeEEECCHHHHHHHHHHHhCccCCcEEEeeCCcCCHHHH
Confidence 345666666666 899999998754321 0 1110 112333332 222 48999998865443332
Q ss_pred cc-ccCC-ceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcCcCcccceecccccccccccchhhHhhhc-cHhh
Q 035501 385 PV-SMGG-IGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQAIVGDKTIAFLLM-DQEM 461 (732)
Q Consensus 385 ~~-~~~g-~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~v~f~~nHD~~r~g~~~~~f~l~-d~~~ 461 (732)
.. ...| .| ++.-. | -...... ......++..+|.|+.+||++.+. +++-. |.
T Consensus 1086 ~~l~~~gi~g--~~Vl~-F-------e~~~~~~---------~~~p~~~~~~~va~t~THD~~Tl~----Gww~~~d~-- 1140 (1221)
T PRK14510 1086 ELLAILGILS--YRVLQ-F-------ERLGEGN---------FLPPPLYNALAAAYVGTHDLPTLA----GWWEGVDL-- 1140 (1221)
T ss_pred HHHHHcCCCc--cEEEE-e-------CccCCCC---------CCChhhCCCCcEEECCCCCCHHHH----HHHHCCCH--
Confidence 21 1111 11 11100 0 0000000 001124677899999999988652 33311 11
Q ss_pred hhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCC-cCccccccCCCccCCcccccch
Q 035501 462 YTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGN-EWSYEKCRRQWNLVDADHLRYK 540 (732)
Q Consensus 462 y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~-~~s~~~~~~~W~~~~~~~~~~~ 540 (732)
...+.+.....+..+++.++..=+++-+=|=.|..+-++.|.... +|.+. .++.-.+.+.. ...
T Consensus 1141 ------------~~r~~l~~~~~~~~~~~~s~s~l~i~plqD~lg~~~r~N~PGT~~~~~nWR-~rl~~~l~~~~--~~~ 1205 (1221)
T PRK14510 1141 ------------SEKEQLGAAEAVIEMLARSPAILVIIQLQDLLGSNVRMNLPGTIRENPNWR-RKLSAPVERLT--LTQ 1205 (1221)
T ss_pred ------------HHHHHhhHHHHHHHHHHhCCchheeecHHHhhCCccCccCCCCCCCCCCcc-cccccChhhhc--cCH
Confidence 000111123333444555555544656666677777777775432 23332 22222222211 123
Q ss_pred HHHHHHHHHHHHHHh
Q 035501 541 FMNAFGRAMNELDDK 555 (732)
Q Consensus 541 ~l~~f~r~Li~lR~~ 555 (732)
.+.+.++.|.+.|.+
T Consensus 1206 ~~~~~l~~l~~~~~r 1220 (1221)
T PRK14510 1206 RACARLRGLAEKRGR 1220 (1221)
T ss_pred HHHHHHHHHHHHhCC
Confidence 577778888877753
No 67
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00013 Score=84.21 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=70.7
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCC------CHHHHHHHHHHHHH-CCCEEEEe
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSG------TPEDLKYLIDKAHS-LGLRVLVD 269 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~G------t~~dfk~LV~~~H~-~GI~VIlD 269 (732)
|.+.+- +.+|.-+|+.|+|.|+++|++|-. .++.-|...|-..+++.+. +.+|.++||+.||+ -||--|-|
T Consensus 139 Gpl~eW-eprL~va~e~gYNmIHfTPlqelG-~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEW-EPRLRVAKESGYNMIHFTPLQELG-LSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhh-hHHHHHHHHcCCceEeeeeHHHhc-cCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 334443 357999999999999999999854 3455688888888888775 68999999999998 49999999
Q ss_pred ecccccCCCCCCCCCC
Q 035501 270 IVHSHASNNVTDGLNG 285 (732)
Q Consensus 270 vV~NH~~~~~~~~~~~ 285 (732)
||+||++.++.|-+..
T Consensus 217 vV~NHtAnns~WlleH 232 (1521)
T KOG3625|consen 217 VVYNHTANNSKWLLEH 232 (1521)
T ss_pred hhhhccccCCchhHhC
Confidence 9999999998664443
No 68
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.002 Score=70.82 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=80.5
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccc------cCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSY------YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~------~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
.++. +.|+.|+.||+|+|+..=.-.... ..-.++.+ ..+.++ +.-|=|..+|++||++||+|+-=+-+-
T Consensus 64 ~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~-~~~~~~---~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 64 QELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLP-GVLGVD---PGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred HHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCcC-cccCCC---CCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4454 579999999999998543322100 00011110 001111 234679999999999999998766655
Q ss_pred ccCCCCCCCC-CCCCC-CCC-CCCCCcccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 274 HASNNVTDGL-NGFDV-GQS-SQESYFHTGDRGYHKLW-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 274 H~~~~~~~~~-~~~d~-~~~-~~~~yf~~~~~g~~~~w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
-++....... ..... ... ....|+. +..| ...-||=.+|+||++|.+.+.--+..|.|||.-||---
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~f 209 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVR------HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYF 209 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEe------cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceee
Confidence 5554321100 00000 000 1111111 1222 23457889999999999999999999999999999754
No 69
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.18 E-value=0.002 Score=69.17 Aligned_cols=128 Identities=22% Similarity=0.466 Sum_probs=81.2
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
-.++. +.++.++++|+ +.|+|=-=+. . .+| + |..++ +|- +.++||+++|++|+++++=+-+ ++
T Consensus 29 ~~~v~-~~~~~~~~~~iP~d~i~iD~~w~-~---~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i 94 (303)
T cd06592 29 QETVL-NYAQEIIDNGFPNGQIEIDDNWE-T---CYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FI 94 (303)
T ss_pred HHHHH-HHHHHHHHcCCCCCeEEeCCCcc-c---cCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-ee
Confidence 34554 57888899985 6777642221 1 111 2 23332 554 3789999999999999998877 44
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCC----CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 276 SNNVTDGLNGFDVGQSSQESYFHTGDRG----YHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 276 ~~~~~~~~~~~d~~~~~~~~yf~~~~~g----~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+.+... |. ......||.....+ ....|. +.-+|+.||++++++.+.++..+.++|||||-+|...
T Consensus 95 ~~~s~~----~~--e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 95 NTDSEN----FR--EAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred CCCCHH----HH--hhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 433211 11 01112333322222 112343 3468999999999999999999978999999999764
No 70
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=97.17 E-value=0.0012 Score=63.71 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCcCCc-----eEEEeccC----CCcEEEEEeC--------------cEEEEEECCCC
Q 035501 540 KFMNAFGRAMNELDDKFPFLASTK-----QIVSSTNE----EDKVIVFERG--------------DLVFVFNFHPE 592 (732)
Q Consensus 540 ~~l~~f~r~Li~lR~~~~aL~~g~-----~~~~~~~~----~~~vlaf~R~--------------~~lvv~N~s~~ 592 (732)
....+++++|++||+++|.|+-+. ..+.+.+. ..+||++.-+ .++||||-+++
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 457899999999999999998762 22333322 3568888773 29999999987
No 71
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.14 E-value=0.0024 Score=70.62 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred hhhhHHHHCCCCEEEECCcc-cc--cccCCCCcccCccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCC
Q 035501 205 DVLPRIRANNYNTVQLMAVM-EH--SYYASFGYHVTNFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT 280 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~-e~--~~~~~~GY~~~~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~ 280 (732)
+.++.++++||+.+.|===+ .. ......|.+ .++ .+| |+.|+.|++.+|++||+.=|=+-+--++.++.
T Consensus 62 ~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-----~~~~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~ 134 (394)
T PF02065_consen 62 ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-----EPDPKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVSPDSD 134 (394)
T ss_dssp HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-----CBBTTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEESSSC
T ss_pred HHHHHHHHhCCEEEEEcCccccccCCCcccCCce-----eEChhhh--CCcHHHHHHHHHHCCCeEEEEeccccccchhH
Confidence 46888899999988652111 10 001112222 233 345 45799999999999999999887766665542
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccccc
Q 035501 281 DGLNGFDVGQSSQESYFHTGDRGYHK-LWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSML 349 (732)
Q Consensus 281 ~~~~~~d~~~~~~~~yf~~~~~g~~~-~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~ 349 (732)
... ..+.|....+..... ......||+++|+|+++|.+.+.-.++++|||.+.+|....+.
T Consensus 135 l~~--------~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 135 LYR--------EHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp HCC--------SSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TT
T ss_pred HHH--------hCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCC
Confidence 211 112233221111111 1122359999999999999999999999999999999987653
No 72
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.06 E-value=0.0011 Score=72.44 Aligned_cols=142 Identities=20% Similarity=0.296 Sum_probs=80.7
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcccccc--------------cCCCCcccCccccCCCCCCCHHHHHHHHHHHHHC
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVMEHSY--------------YASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSL 262 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~--------------~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~ 262 (732)
-.++. +.++.+++.|| ++|+|=+-+.... ..+|-|+...| ....+|- +.++||+++|++
T Consensus 23 ~~ev~-~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f-~~~~~FP---dp~~mi~~Lh~~ 97 (340)
T cd06597 23 QAEVM-RQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSF-PVEGRWP---NPKGMIDELHEQ 97 (340)
T ss_pred HHHHH-HHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceeccccc-CccccCC---CHHHHHHHHHHC
Confidence 34443 57888888887 7888853221000 01111222222 1112333 588999999999
Q ss_pred CCEEEEeecccccCCC-CCCCCCCCCCCCCCCCCCcccCCCCC--C--CCCC--CCCCCCCCHHHHHHHHHHHHHHHHhc
Q 035501 263 GLRVLVDIVHSHASNN-VTDGLNGFDVGQSSQESYFHTGDRGY--H--KLWD--SRLFNYANWEVLRFLLSNLRWWIEEF 335 (732)
Q Consensus 263 GI~VIlDvV~NH~~~~-~~~~~~~~d~~~~~~~~yf~~~~~g~--~--~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~ 335 (732)
|++|++=+.+ ++..+ +.......+........||.....|. . ..|. +.-+|+.||++++...+.++.+++++
T Consensus 98 G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~ 176 (340)
T cd06597 98 GVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDEL 176 (340)
T ss_pred CCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhc
Confidence 9999985443 22211 00000000000011123443322221 1 2342 45799999999999999999999889
Q ss_pred CceEEeecCcc
Q 035501 336 KFDGFRFDGVT 346 (732)
Q Consensus 336 giDGfR~D~~~ 346 (732)
|||||-+|+..
T Consensus 177 Gidg~w~D~~E 187 (340)
T cd06597 177 GIDGFKTDGGE 187 (340)
T ss_pred CCcEEEecCCC
Confidence 99999999764
No 73
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.97 E-value=0.0041 Score=67.23 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=82.8
Q ss_pred ChHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCccc-CccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 198 SYREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHV-TNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~-~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
+-.++. +.++.+++.|| ++|||- ........++||.. .+ |..++ +|- +.++||+++|++|++|++-+ ..
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i-~P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYI-NP 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEe-cC
Confidence 445554 57888888877 788885 32100112234321 11 23333 443 47899999999999999944 45
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcccCCCC--C-CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 274 HASNNVTDGLNGFDVGQSSQESYFHTGDRG--Y-HKLW--DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 274 H~~~~~~~~~~~~d~~~~~~~~yf~~~~~g--~-~~~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
++..+.... |+ ......||.....+ + ...| .+.-+|+.||++++...+-++..+.++|||||=+|.-.
T Consensus 94 ~v~~~~~~~---y~--~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLY---YE--EAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchh---HH--HHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 554432110 11 11112333322222 1 1233 24579999999999999999988777999999999653
No 74
>smart00632 Aamy_C Aamy_C domain.
Probab=96.91 E-value=0.0042 Score=52.92 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCcEEEEEeC-cEEEEEECCCCCccccEEEecCCCCcEEEEecC
Q 035501 572 EDKVIVFERG-DLVFVFNFHPENTYEGYKVGCDLPGKYRVALDS 614 (732)
Q Consensus 572 ~~~vlaf~R~-~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~s 614 (732)
++.+|+|.|+ ..+|++|.+.......+...+| .|+|+++++.
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp-~G~Y~d~l~g 49 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDSDLTITLQTSLP-AGTYCDVISG 49 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCCceEEEEeecCC-CcceEEEecC
Confidence 3449999996 5899999987633333444675 6999999974
No 75
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.89 E-value=0.05 Score=64.49 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHCCC--EEEEeeccc--ccCCCCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHH--H
Q 035501 250 EDLKYLIDKAHSLGL--RVLVDIVHS--HASNNVTDGLNGF--DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEV--L 321 (732)
Q Consensus 250 ~dfk~LV~~~H~~GI--~VIlDvV~N--H~~~~~~~~~~~~--d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v--~ 321 (732)
+.++++.+.|+++|| ++|-|+.+- +-|.+.......| +...+.++.+|... ...|+.+.+|+..=.- -
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL----GQNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc----cccCCCcCcCHHHHHhcCc
Confidence 446667777999999 679999863 3232221111112 22235566777543 3578888777542111 1
Q ss_pred HHHHHHHHHHHHhcCceEEeecCcccc
Q 035501 322 RFLLSNLRWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 322 ~~i~~~l~~Wl~e~giDGfR~D~~~~~ 348 (732)
+..++-++.-++ ++|++|+|.+--+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl 455 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSL 455 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhh
Confidence 334555555566 7899999987543
No 76
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.88 E-value=0.0046 Score=66.61 Aligned_cols=129 Identities=15% Similarity=0.278 Sum_probs=81.5
Q ss_pred hHhHHHhhhhHHHHCC--CCEEEECCcccccccCCCCcccCccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 199 YREFADDVLPRIRANN--YNTVQLMAVMEHSYYASFGYHVTNFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LG--vt~I~L~Pi~e~~~~~~~GY~~~~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
-..+. +.++.+++.| +++|+|=.=+.. +|.-.+ |..+ .+|.. .++||+++|++||+|++-+.+ ++
T Consensus 23 ~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i 90 (308)
T cd06593 23 EEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YI 90 (308)
T ss_pred HHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CC
Confidence 34443 5788999999 567776543321 121112 3444 36654 689999999999999998875 55
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 276 SNNVTDGLNGFDVGQSSQESYFHTGDRGY---HKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 276 ~~~~~~~~~~~d~~~~~~~~yf~~~~~g~---~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+.++.. |. ......||.....+. ...|. ..-+|+.||++++++.+.++.+++ +|||||-+|...
T Consensus 91 ~~~~~~----~~--e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e 159 (308)
T cd06593 91 AQKSPL----FK--EAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGE 159 (308)
T ss_pred CCCchh----HH--HHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCC
Confidence 544321 11 011122332221111 12232 356899999999999999999888 799999999764
No 77
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.78 E-value=0.017 Score=66.11 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=32.5
Q ss_pred ecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccc
Q 035501 186 HVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEH 226 (732)
Q Consensus 186 hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~ 226 (732)
|+-+.-+.-++|+|..++...++.+++.|....+|+|++..
T Consensus 21 ~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 21 QLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred ccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 44333333678999999877899999999999999999874
No 78
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.65 E-value=0.011 Score=67.44 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=65.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH---------hcCceEEeecCccccccccccccchhhhhHhhhc-------------
Q 035501 310 SRLFNYANWEVLRFLLSNLRWWIE---------EFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF------------- 367 (732)
Q Consensus 310 ~~~ln~~~p~v~~~i~~~l~~Wl~---------e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~------------- 367 (732)
.+++|=+||.|+.+-+.++.|.+. +..+||+|+|+|..+ ....++....++
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV-------dADlLqia~dyfkaaYgv~~~~a~A 215 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV-------DADLLQIAGDYFKAAYGVDKNDANA 215 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS--------THHHHHHHHHHHHHH-TTTBHHHH
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc-------CHHHHHHHHHHHHHHhCCCcChhhH
Confidence 367889999999999999999997 678999999999876 333443333222
Q ss_pred -ceEEEeeccCCC-CCCCcccccCCceecccccccccHHHHHHHhcCCCCCccHHHHHH-HhhcCcC------cccceec
Q 035501 368 -NATVIAEDVSGM-PGLGSPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQ-SLTNRRY------TEKCISY 438 (732)
Q Consensus 368 -~~~~iaE~~~~~-~~~~~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~l~~~~~------~~~~v~f 438 (732)
.-+.|-|.|+.. |..........+-+|..+. ..++..|.......+.+..+.. .+.+|.. ......|
T Consensus 216 n~HlSilE~ws~nd~~y~~~~g~~qL~mD~~~~----~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en~a~pNYsF 291 (809)
T PF02324_consen 216 NKHLSILEAWSSNDPDYVKDTGNPQLTMDNGLR----LALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTENEAQPNYSF 291 (809)
T ss_dssp CTC--EESSSTTTHHHHHHHTTSSSBEEEHHHH----HHHHHHTSS-TTC---CTHHHHSSSSECSEE--SSESS-EEEE
T ss_pred hhhheeeeccccCChHHHhcCCCceeeecHHHH----HHHHHHhcCCccccccHHHHhhhhhcccccCCcCCcccCceee
Confidence 268899999742 2222222222233333221 1233333333333344555443 4443321 1223468
Q ss_pred cccccccc
Q 035501 439 AESHDQAI 446 (732)
Q Consensus 439 ~~nHD~~r 446 (732)
+.+||...
T Consensus 292 vrAHDsev 299 (809)
T PF02324_consen 292 VRAHDSEV 299 (809)
T ss_dssp S-BSSTTT
T ss_pred eecccHHH
Confidence 99999763
No 79
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.51 E-value=0.11 Score=66.66 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHCC--CEEEEeeccc--ccCCCCCCC-CCCC--CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHH--
Q 035501 250 EDLKYLIDKAHSLG--LRVLVDIVHS--HASNNVTDG-LNGF--DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEV-- 320 (732)
Q Consensus 250 ~dfk~LV~~~H~~G--I~VIlDvV~N--H~~~~~~~~-~~~~--d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v-- 320 (732)
+.++++-+.|+++| |++|-|+.+- +-|.+. |. ...| +..-+.++.+|... ...|+.+.+|+..=.-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADv-Wa~p~lF~l~~~aGAPPD~Fs~~----GQ~WG~P~y~p~~L~~~g 460 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSET-WSHPELFANGASIGAPPDELNPK----GQDWGLPPFDPLELERDG 460 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHH-hcCHhhhhcCCccCCCCCcCccc----cccCCCcCcCHHHHHhcC
Confidence 45666777799999 7889999863 222221 21 1112 22335566777543 3578888877643211
Q ss_pred HHHHHHHHHHHHHhcCceEEeecCccccc-cc--ccccc-----------chhhhhH---hhhcceEEEeeccCCCC
Q 035501 321 LRFLLSNLRWWIEEFKFDGFRFDGVTSML-YH--HHGIN-----------MSFTGNY---NEYFNATVIAEDVSGMP 380 (732)
Q Consensus 321 ~~~i~~~l~~Wl~e~giDGfR~D~~~~~~-~~--~~g~~-----------~~f~~~~---~~~~~~~~iaE~~~~~~ 380 (732)
-...++-++.-++ ++|++|+|.+--+. ++ ..|.. .++...+ ....++.+|||+....|
T Consensus 461 Y~ww~~rlr~~m~--~~g~lRIDH~lGl~RlW~IP~g~ta~~G~yv~yP~~~ll~~laLEs~r~~~~VIgEDLGtVp 535 (1693)
T PRK14507 461 YAPFRALLRANMR--HAGALRIDHVMQLMRLFWIPLGRSAREGAYVAYPFEPMLAVLALESHRNRCLVIGEDLGTVP 535 (1693)
T ss_pred hHHHHHHHHHHHH--HCCEEEeccHHhhhHhcccCCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCeEEEecCCCCC
Confidence 1335556666666 68999999874432 00 11110 2333333 23345889999876443
No 80
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.32 E-value=0.017 Score=63.01 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=77.9
Q ss_pred HhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 200 REFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
.++. +.++.+++.|+ +.|+|=.=+- ....+|-++.. +|-.+. -++||+++|++|++|++=+.+ |+..
T Consensus 24 ~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~f~~d~~-------~FPdp~-~~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 24 DEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRDFTLDPV-------RFPGLK-MPEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred HHHH-HHHHHHHHhCCCcceEEECcccc-cCccceecccc-------cCCCcc-HHHHHHHHHHCCCEEEEEEeC-cccc
Confidence 3443 56777888776 7777632221 11122223332 333221 189999999999999996543 3332
Q ss_pred CC-CCCCCCCCCCCCCCCCCcccCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 278 NV-TDGLNGFDVGQSSQESYFHTGDRGY---HKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 278 ~~-~~~~~~~d~~~~~~~~yf~~~~~g~---~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+. ......|+ ......||.....+. ...|. +.-+|+.||++++...+.++..++++|||||=+|...
T Consensus 93 ~~~~~~~~~~~--e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 93 NEPTGSYPPYD--RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CcCCCCCHHHH--HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 21 00001111 011123333322221 12332 3458999999999999999999988999999999764
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.18 E-value=0.032 Score=64.27 Aligned_cols=130 Identities=18% Similarity=0.304 Sum_probs=70.3
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCC-----CC-------CCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS-----RS-------GTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~-----~~-------Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
++.|+.|++.-||.||+= .|-|.-...+..+. .+ =..+-+|.+|++||+.||++|.=.-
T Consensus 121 ~~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynm 191 (559)
T PF13199_consen 121 EAEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNM 191 (559)
T ss_dssp HHHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHh
Confidence 467999999999999952 33333333333332 22 2368999999999999999987433
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccCCCC------CCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhcCceEEeec
Q 035501 272 HSHASNNVTDGLNGFDVGQSSQESYFHTGDRG------YHKLWDS--RLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFD 343 (732)
Q Consensus 272 ~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g------~~~~w~~--~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D 343 (732)
..-...+... ++-...+ ..|..+... ....|.+ ..+|-.|++-|+||++-+...++.+|+|||-+|
T Consensus 192 iyaa~~~~~~-----~gv~~eW-~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlD 265 (559)
T PF13199_consen 192 IYAANNNYEE-----DGVSPEW-GLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLD 265 (559)
T ss_dssp SSEEETT--S-------SS-GG-BEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhccccCccc-----ccCCchh-hhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeee
Confidence 3222222100 1000111 112211110 0123433 467899999999999999999999999999999
Q ss_pred Ccccc
Q 035501 344 GVTSM 348 (732)
Q Consensus 344 ~~~~~ 348 (732)
.+...
T Consensus 266 q~G~~ 270 (559)
T PF13199_consen 266 QLGNR 270 (559)
T ss_dssp -S--E
T ss_pred ccCCC
Confidence 98754
No 82
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.29 Score=55.69 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=32.8
Q ss_pred CceEEEEecCCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccc
Q 035501 179 APRIYEAHVGMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEH 226 (732)
Q Consensus 179 ~~~IYE~hv~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~ 226 (732)
-+-+|.++. ...-++|+|..++-..++-+.+-|.+.++|+|+..-
T Consensus 17 ~v~L~~~~~---~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 17 GVQLYSLRL---PGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred eeEEeeecc---CCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 344555443 233467899888876777888999999999999853
No 83
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.10 E-value=0.0095 Score=64.49 Aligned_cols=129 Identities=16% Similarity=0.286 Sum_probs=76.1
Q ss_pred HhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 200 REFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
.++. +.++.+++.|+ ++|+|=- ......|+ .-|..++ +|-. .++||+.+|++|++||+-+. -++.
T Consensus 24 ~ev~-~~~~~~~~~~iP~d~i~lD~----~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 24 EELL-DVAKEYRKRGIPLDVIVQDW----FYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred HHHH-HHHHHHHHhCCCccEEEEec----hhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4443 56777777754 7776631 11111111 1233333 4543 57999999999999999554 4454
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCC--CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 277 NNVTDGLNGFDVGQSSQESYFHTGDRG--YHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~yf~~~~~g--~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.+... |. ......||.....+ +...|. ...+|+.||++++...+.++.-+.++|||||=+|...
T Consensus 92 ~~~~~----y~--e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 92 PETEN----YK--EMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred CCChh----HH--HHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 33211 11 01112343322221 223453 3579999999999988877765666999999999875
No 84
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.06 E-value=0.011 Score=64.00 Aligned_cols=127 Identities=14% Similarity=0.208 Sum_probs=76.0
Q ss_pred hhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCC
Q 035501 205 DVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTD 281 (732)
Q Consensus 205 ~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~ 281 (732)
+.++.+++.|| ++|+|=+=+... .|-. ..-|..+ .+|- +.++||+++|++|++|++-+.+ ++..+++.
T Consensus 33 ~~~~~~r~~~iP~d~i~ld~~~~~~----~~~~-~~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~~~~~ 103 (317)
T cd06599 33 EFIDKCREHDIPCDSFHLSSGYTSI----EGGK-RYVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQDHPR 103 (317)
T ss_pred HHHHHHHHcCCCeeEEEEecccccc----CCCc-eeeeecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccCCCHH
Confidence 57888888887 778774321100 0100 0112333 3554 5679999999999999995544 34333211
Q ss_pred CCCCCCCCCCCCCCCcccCCCC----CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 282 GLNGFDVGQSSQESYFHTGDRG----YHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 282 ~~~~~d~~~~~~~~yf~~~~~g----~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
|+. .....||.....+ ....|. +..+|+.||+++++..+.++.-+.+.|||||=+|...
T Consensus 104 ----y~e--~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 104 ----YKE--LKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred ----HHH--HHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 110 1112344222111 122343 3469999999999999999777777899999999663
No 85
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.79 E-value=0.015 Score=62.97 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=78.8
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
-.++. +.++.+++.+| +.|+|=.=+- .....+-+++. +|- +.++||+.+|++|++|++=+. -++.
T Consensus 23 ~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~-------~FP---dp~~~i~~l~~~g~k~~~~~~-P~i~ 89 (317)
T cd06600 23 QDKVV-EVVDIMQKEGFPYDVVFLDIHYM-DSYRLFTWDPY-------RFP---EPKKLIDELHKRNVKLVTIVD-PGIR 89 (317)
T ss_pred HHHHH-HHHHHHHHcCCCcceEEEChhhh-CCCCceeechh-------cCC---CHHHHHHHHHHCCCEEEEEee-cccc
Confidence 34443 56778888776 7777743111 11122222222 443 457999999999999999554 3443
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 277 NNVTDGLNGFDVGQSSQESYFHTGDRGY---HKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~yf~~~~~g~---~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.+... ..|. ......||.....+. ...|. +.-+|+.||++++...+.++..+.++|||||=+|...
T Consensus 90 ~~~~~--~~~~--~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 90 VDQNY--SPFL--SGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred CCCCC--hHHH--HHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 32110 0111 011123443322221 23453 2468999999999999999999877999999999764
No 86
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.67 E-value=0.016 Score=65.73 Aligned_cols=131 Identities=20% Similarity=0.401 Sum_probs=76.0
Q ss_pred HhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 200 REFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
..+. +.++.+++.|+ ++|+|-.-+.. ...+|.+++.. |- ++++|++.+|++|++|++-+.+ ++..
T Consensus 43 ~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~-------FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 43 DEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPER-------FP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp HHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTT-------TT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred HHHH-HHHHHHHHcCCCccceeccccccc-ccccccccccc-------cc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 3443 57888888887 55554433321 12233333333 32 7899999999999999998887 3433
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCC---CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 278 NVTDGLNGFDVGQSSQESYFHTGDRG---YHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 278 ~~~~~~~~~d~~~~~~~~yf~~~~~g---~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
... ....|+. .....|+.....+ ....|. ...+|+.||++++++.+.++..++.+|||||-+|...
T Consensus 110 ~~~-~~~~~~~--~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 110 DSP-DYENYDE--AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp TTT-B-HHHHH--HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred CCC-cchhhhh--HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 321 0000100 0011233322222 112354 4679999999999999999999998899999999864
No 87
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.61 E-value=0.033 Score=60.88 Aligned_cols=129 Identities=20% Similarity=0.313 Sum_probs=78.1
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
-..+. +.++.+++.|| ++|+|=.-+.. +|. .|.-++ +|- +.++||+.+|++|++|++=+.+ |+
T Consensus 23 ~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~---~f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v 88 (339)
T cd06604 23 EEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR---VFTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GV 88 (339)
T ss_pred HHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC---ceeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ce
Confidence 34443 57888888887 78887543321 121 123333 454 4589999999999999986543 33
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCC---CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 276 SNNVTDGLNGFDVGQSSQESYFHTGDRG---YHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 276 ~~~~~~~~~~~d~~~~~~~~yf~~~~~g---~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
..+.. ...|+. .....||.....+ ....|. ..-+|+.||+++++..+.++..++ .|||||=+|...
T Consensus 89 ~~~~~--~~~~~e--~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 89 KVDPG--YDVYEE--GLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eCCCC--ChHHHH--HHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 22110 011110 1112333322222 122343 345899999999999999998875 899999999764
No 88
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.19 E-value=0.19 Score=59.32 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCC--CcccCccccC-CCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASF--GYHVTNFFAA-SSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~--GY~~~~y~av-~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
+.+. ..|+.||++|+|+|+|-.+.+....+.+ -|-|..+.-+ ++-| +-+.-.+ +|++|++|.-=+.+=-++
T Consensus 334 ~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 334 RNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEeccceeec
Confidence 4554 6899999999999999987654332221 1222222111 1111 2223333 899999997655433222
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccc
Q 035501 277 NNVTDGLNGFDVGQSSQESYFHT--GDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~yf~~--~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~ 348 (732)
-+.. ......+.. +....++.|..+ |+-.+|+||+.|.++..-.+..|.|||+-||-=..+
T Consensus 408 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 408 LDPT----------LPRVKRLDTGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred cCCC----------cchhhhccccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 1100 000011110 111224556444 899999999999999999999899999999865443
No 89
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.16 E-value=0.14 Score=54.88 Aligned_cols=127 Identities=19% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHhhhhHHHHCCCCEEEECCccccc-ccCCCCcccCccccC--CCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCC
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHS-YYASFGYHVTNFFAA--SSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNV 279 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~y~av--~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~ 279 (732)
.++.|+.|++-|+|+|-+ +.. ..+.-.|....-.+. ...-..+.|+++|++.||++||.+|-=||. -++.
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~---FkD~ 87 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV---FKDP 87 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE---ecCh
Confidence 356899999999999964 222 122223443222111 111122579999999999999999999983 2221
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccc
Q 035501 280 TDGLNGFDVGQSSQESYFHTGDRGYHKLW----DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTS 347 (732)
Q Consensus 280 ~~~~~~~d~~~~~~~~yf~~~~~g~~~~w----~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~ 347 (732)
..+.. .+.|......| ..| +..=+|--+++|++|+++.++-..+ .|||..-||-+..
T Consensus 88 ~la~~--------~pe~av~~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRF 148 (316)
T PF13200_consen 88 VLAEA--------HPEWAVKTKDG--SVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRF 148 (316)
T ss_pred HHhhh--------ChhhEEECCCC--CcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeec
Confidence 11111 11111111111 122 1223677789999999999999887 7999999998854
No 90
>PRK10426 alpha-glucosidase; Provisional
Probab=94.55 E-value=0.15 Score=60.17 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=77.2
Q ss_pred hhhhHHHHCCC--CEEEECCcccccccCCCCcccC-ccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCC
Q 035501 205 DVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVT-NFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT 280 (732)
Q Consensus 205 ~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~-~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~ 280 (732)
+.++.+++.|| ++|||- -+......++|...- || ..| .+|- +.++||+++|++|++|++=+-+- +..+..
T Consensus 225 ~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v~~~~~ 298 (635)
T PRK10426 225 KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-LASDGD 298 (635)
T ss_pred HHHHHHHHcCCCeeEEEEe-cccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-cCCCCH
Confidence 57888888885 899985 221111122332111 11 222 2333 47889999999999999986643 322211
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCC---CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 281 DGLNGFDVGQSSQESYFHTGDRGY---HKLW--DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 281 ~~~~~~d~~~~~~~~yf~~~~~g~---~~~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.|. ......||....+|. ...| .+..+|+.||++|+...+.++..+.+.|||||=.|.-.
T Consensus 299 ----~y~--e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E 363 (635)
T PRK10426 299 ----LCE--EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGE 363 (635)
T ss_pred ----HHH--HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCC
Confidence 111 011123443322221 1123 24568999999999999998877777999999998654
No 91
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.09 E-value=0.081 Score=57.23 Aligned_cols=132 Identities=12% Similarity=0.150 Sum_probs=75.3
Q ss_pred HhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 200 REFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAAS-SRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~-~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
.++. +.++.+++.|| ++|+|=.=+-........|. + |..+ .+|-. .++||+.+|++|++|++=+.+ ++.
T Consensus 24 ~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P-~v~ 95 (317)
T cd06598 24 QEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP-FVL 95 (317)
T ss_pred HHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC-ccc
Confidence 4443 57888888876 67776432100000000011 1 2333 25544 478999999999999998753 333
Q ss_pred CCCCCCCCCCCCCCCCCCCC-cccCCCC--C-CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 277 NNVTDGLNGFDVGQSSQESY-FHTGDRG--Y-HKLW--DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~y-f~~~~~g--~-~~~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.++.. |+. .....| +.....+ + ...| .+.-+|+.||++++...+.++..++ .|||||=+|...
T Consensus 96 ~~~~~----y~e--~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 96 KNSKN----WGE--AVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred CCchh----HHH--HHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 32211 110 111122 3222111 1 1233 2457899999999999999988755 899999999763
No 92
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.00 E-value=0.074 Score=63.07 Aligned_cols=88 Identities=16% Similarity=0.301 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCC---CCC--CCCCCCCCCHHHHHHHH
Q 035501 251 DLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYH---KLW--DSRLFNYANWEVLRFLL 325 (732)
Q Consensus 251 dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~---~~w--~~~~ln~~~p~v~~~i~ 325 (732)
+.+.||+++|++|++|++=+.+ +...++. .|+ ......||....+|.. ..| +..-+|+.||++|+...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~----~f~--e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP----LFK--EGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch----HHH--HHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 4568999999999999997654 3333221 111 0112234443333321 234 24579999999999999
Q ss_pred HHHHHHHHhcCceEEeecCcc
Q 035501 326 SNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 326 ~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+-++.+++ .|||||-.|...
T Consensus 399 ~~~~~l~d-~Gvdgfw~D~gE 418 (665)
T PRK10658 399 DKLKGLLD-MGVDCFKTDFGE 418 (665)
T ss_pred HHHHHHHh-cCCcEEEecCCc
Confidence 99999887 799999999643
No 93
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.94 E-value=0.2 Score=52.37 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSN 327 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~ 327 (732)
+.+.+++.|..+|++|+||++=+-.+|.+.. + ....+++-++.+.++
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-----------------~----------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-----------------F----------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-----------------c----------------cccCCHHHHHHHHHH
Confidence 4689999999999999999998765554321 0 011234567777778
Q ss_pred HHHHHHhcCceEEeecCc
Q 035501 328 LRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 328 l~~Wl~e~giDGfR~D~~ 345 (732)
+.-++++||+||+=+|-=
T Consensus 96 l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 96 IVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred HHHHHHHhCCCceEEeee
Confidence 888888999999999953
No 94
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.35 E-value=0.15 Score=53.59 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=42.2
Q ss_pred HHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCC--CC--CHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 202 FADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSR--SG--TPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 202 ~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~--~G--t~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
.+++-++.||++|+|+|=|.--.+. +...++. +. ..+.|+++|+.|+++||+||||+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~------------~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA------------YQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS------------TSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH------------hcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4567899999999999997544211 1111222 12 26899999999999999999998644
No 95
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.97 E-value=0.19 Score=53.76 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=70.1
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcc-cccc--cCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVM-EHSY--YASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~-e~~~--~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
-.++. +.++.+++.|| ++|+|=-=+ .... .+--+|. -|..|+ +|- +.++||+++|++|++||+-+.+
T Consensus 24 ~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 24 DEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred HHHHH-HHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 34443 46777777776 777762111 1000 0000111 123332 453 4589999999999999998876
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCc
Q 035501 273 SHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 273 NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~ 345 (732)
......... .|+ . +..........-+...+|+.||+.++...+.++.-+.++|||||=.|.-
T Consensus 97 ~~~~~~~~~---~y~-------~-~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 97 ADGIRAHED---QYP-------E-MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CcccCCCcH---HHH-------H-HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 431111100 000 0 0000000000001135799999999987777766666699999999954
No 96
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=92.19 E-value=0.43 Score=46.53 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=46.8
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
+.+.++|++|+++|-|. ...+...-+.|+.+....-..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 24 ~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 46999999999999877 2222333344555522222235678899999999999999999877653
No 97
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.53 E-value=0.45 Score=51.54 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=57.6
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL 283 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~ 283 (732)
.+.+..||+.|+|+|=|=--. .|.. .-+-+.+...+|.+.+++.||+|+||+=|+++-.+.
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv-~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP---- 87 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV-NPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP---- 87 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S-S-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT----
T ss_pred CCHHHHHHhcCCCeEEEEecc-CCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC----
Confidence 467999999999999875433 2321 345578999999999999999999999876653221
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCce
Q 035501 284 NGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFD 338 (732)
Q Consensus 284 ~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giD 338 (732)
+.+..-..|....++-=...|.+|-.++|....+. |+.
T Consensus 88 ----------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~-G~~ 125 (332)
T PF07745_consen 88 ----------------GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA-GVT 125 (332)
T ss_dssp ----------------TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT-T--
T ss_pred ----------------CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCC
Confidence 00111134544333333346777777777777663 554
No 98
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=91.39 E-value=0.26 Score=53.83 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=76.8
Q ss_pred hHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 199 YREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
-.++. +.++.+++.|| ++|+|=.=+. .+|. .|..++ +|- +.+.||+++|++|++|++-+.+- +
T Consensus 23 ~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v 88 (339)
T cd06603 23 QEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-I 88 (339)
T ss_pred HHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-e
Confidence 34443 46777887776 6777643211 1222 234444 554 45889999999999999987643 2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCC---CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHH--hcCceEEeecCc
Q 035501 276 SNNVTDGLNGFDVGQSSQESYFHTGDRG---YHKLWD--SRLFNYANWEVLRFLLSNLRWWIE--EFKFDGFRFDGV 345 (732)
Q Consensus 276 ~~~~~~~~~~~d~~~~~~~~yf~~~~~g---~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~--e~giDGfR~D~~ 345 (732)
..+. ....|. ......||.....+ ....|. +..+|+.||++++...+-++..+. ..+||||=+|..
T Consensus 89 ~~~~--~~~~y~--e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 89 KRDD--GYYVYK--EAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred ecCC--CCHHHH--HHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 2221 000111 01112333322222 122343 347899999999999999998886 368999999865
No 99
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=90.12 E-value=0.79 Score=49.84 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred hhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCC
Q 035501 205 DVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTD 281 (732)
Q Consensus 205 ~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~ 281 (732)
+.++.+++.+| ++|+|=.=+. . +| ..|..++ +|-.+ ++||+++|++|++||+-+.+- ....
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~----~--~~---~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~g--- 91 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQ----D--NY---RTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-ISYG--- 91 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchh----c--CC---CceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-eecC---
Confidence 46677777666 7777654221 1 22 1234443 56544 789999999999999877532 1100
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 282 GLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 282 ~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
....+.+.-.||.||++|++..+..+.+.+ .|||||=.|.-.
T Consensus 92 ----------------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 92 ----------------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred ----------------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCCC
Confidence 000112234789999999998888888877 699999999764
No 100
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=89.86 E-value=0.49 Score=57.00 Aligned_cols=89 Identities=20% Similarity=0.344 Sum_probs=59.4
Q ss_pred HHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCC---CCCCC--CCCCCCCCHHHHHHHHH
Q 035501 252 LKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGY---HKLWD--SRLFNYANWEVLRFLLS 326 (732)
Q Consensus 252 fk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~---~~~w~--~~~ln~~~p~v~~~i~~ 326 (732)
.|.||+.+|++||++|.=+.+.=.... + .|+ ......||..+.+|. ...|. +.-+||.||++|+...+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~-~----~~~--e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~ 395 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDS-P----LFK--EAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWAS 395 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCC-c----hHH--HHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHH
Confidence 349999999999999997776433221 1 111 011234555444332 24454 57899999999999996
Q ss_pred HH-HHHHHhcCceEEeecCcccc
Q 035501 327 NL-RWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 327 ~l-~~Wl~e~giDGfR~D~~~~~ 348 (732)
.. ..+++ +|||||=.|...-.
T Consensus 396 ~~~~~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 396 DKKKNLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred HHHhHHHh-cCccEEEccCCCCc
Confidence 44 45666 89999999987543
No 101
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.83 E-value=0.79 Score=54.63 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=55.6
Q ss_pred cccccCCcEEeCCc-EEEEEEcCCCCeEEEEeccCCCCCcccceee-CCCCEEEEEecCCCCCCCCCCCceEEEEEEeCC
Q 035501 53 KGYLEFGFNREDGG-IVYREWAPAAKEAQLIGDFNGWDGSNHKMER-NEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDG 130 (732)
Q Consensus 53 ~~~~~lG~~~~~~g-~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~-~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g 130 (732)
+.+.-||.|..++| +.+|+|-|.|.+|.|+. -. .....+|++ ...|+|+..+|.. ..|++++...+
T Consensus 25 ~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~-~~--~~~~~~~~~~~~~g~f~~~~~~~---------~~y~~~~~~~~ 92 (730)
T PRK12568 25 DAFAVLGPHPQADGRRQVRVLAPGAEAMGLID-GR--GKLLARMQASPIDGVFEGILPAD---------GPYRLRIVWPD 92 (730)
T ss_pred CchHhcCCcCCCCCcEEEEEECCCCcEEEEEe-cC--CccccccEecCCCCeEEEecCCC---------CCEEEEEEeCC
Confidence 34667999988888 69999999999999973 11 112237887 5579999999832 13888887644
Q ss_pred eEeecccccccc
Q 035501 131 VFIDRIPAWIKY 142 (732)
Q Consensus 131 ~~~~~~dpya~~ 142 (732)
......|||+..
T Consensus 93 ~~~~~~dpy~~~ 104 (730)
T PRK12568 93 VVQEIEDPYAFA 104 (730)
T ss_pred ceEEeecccccc
Confidence 334457888743
No 102
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=89.15 E-value=0.34 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCCcEEEEEe----CcEEEEEECCCC
Q 035501 571 EEDKVIVFER----GDLVFVFNFHPE 592 (732)
Q Consensus 571 ~~~~vlaf~R----~~~lvv~N~s~~ 592 (732)
+.++|++|.| +.++||+|.++.
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~~ 32 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKNDK 32 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SSS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCCC
Confidence 4677999999 359999999987
No 103
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=88.91 E-value=1.4 Score=34.85 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=15.7
Q ss_pred CcEEEEEECCCCCccccEEEecCCCCcEEEEecC
Q 035501 581 GDLVFVFNFHPENTYEGYKVGCDLPGKYRVALDS 614 (732)
Q Consensus 581 ~~~lvv~N~s~~~~~~~~~i~~p~~g~~~~~l~s 614 (732)
+.+++++|++.++ ..+.+ +..++++|+.
T Consensus 12 ~~y~F~~N~s~~~----~~v~l--~~~~~dll~g 39 (58)
T PF08533_consen 12 GRYLFLLNFSDEP----QTVTL--PESYTDLLTG 39 (58)
T ss_dssp TTEEEEEE-SSS-----EE------TT-EEEES-
T ss_pred CEEEEEEECCCCC----EEEEc--CCCceecccC
Confidence 4699999999872 34444 5667888863
No 104
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=88.08 E-value=1.1 Score=55.04 Aligned_cols=124 Identities=17% Similarity=0.272 Sum_probs=74.1
Q ss_pred hhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCC
Q 035501 205 DVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTD 281 (732)
Q Consensus 205 ~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~ 281 (732)
+.++.+++.|| ++|||=- .+. .||.. |..++ +|- +.++||+.+|++|+++|.=+.+ ++..+.
T Consensus 205 eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d~-- 269 (978)
T PLN02763 205 EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAEE-- 269 (978)
T ss_pred HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccCC--
Confidence 46777787776 7787642 111 13332 34443 564 4579999999999999875433 332211
Q ss_pred CCCCCCCCCCCCCCCcccCCCCC---CCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 282 GLNGFDVGQSSQESYFHTGDRGY---HKLWDS--RLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 282 ~~~~~d~~~~~~~~yf~~~~~g~---~~~w~~--~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+...++. .....+|.....+. ...|.+ .-.||.||++|++..+.++.+++ .|||||=+|+-.
T Consensus 270 gY~~y~e--g~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 270 GYFVYDS--GCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred CCHHHHh--HhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 1111111 11122332222221 134532 34699999999999999998888 799999999753
No 105
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=87.88 E-value=1.1 Score=49.47 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 035501 253 KYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWI 332 (732)
Q Consensus 253 k~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl 332 (732)
++|+..||++|++|++..-+ . + -...++..|+-+++++.-++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~--------------~---------~---------------~~l~~~~~R~~fi~siv~~~ 108 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDV--------------P---------L---------------EQISNPTYRTQWIQQKVELA 108 (358)
T ss_pred HHHHHHHHHcCCEEEEECcc--------------C---------H---------------HHcCCHHHHHHHHHHHHHHH
Confidence 48999999999999974100 0 0 02457889999999999999
Q ss_pred HhcCceEEeecCc
Q 035501 333 EEFKFDGFRFDGV 345 (732)
Q Consensus 333 ~e~giDGfR~D~~ 345 (732)
+++|+||+-+|-=
T Consensus 109 ~~~gfDGIdIDwE 121 (358)
T cd02875 109 KSQFMDGINIDIE 121 (358)
T ss_pred HHhCCCeEEEccc
Confidence 9999999999964
No 106
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.41 E-value=1.7 Score=48.21 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred HHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCC--CHHHHHHHHHHHHHCCCEEEEeecccccCCCCC
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSG--TPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVT 280 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~G--t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~ 280 (732)
.++-|.-+|++|+|+|-|..+.=. .++|.=| .-+.|.++|+.|+++||+|||-+.. +..+
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~--------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~P--- 73 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWS--------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAPP--- 73 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHH--------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHHcCCCEEEEEEechh--------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-cccc---
Confidence 346799999999999998776411 1111111 1356999999999999999997762 2221
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC----ceEEeecC
Q 035501 281 DGLNGFDVGQSSQESYFHTGDRGYHKLWD-SRLFNYANWEVLRFLLSNLRWWIEEFK----FDGFRFDG 344 (732)
Q Consensus 281 ~~~~~~d~~~~~~~~yf~~~~~g~~~~w~-~~~ln~~~p~v~~~i~~~l~~Wl~e~g----iDGfR~D~ 344 (732)
.++..- .+..-..+..|....++ ...+++.+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 74 ~Wl~~~------~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 AWLYDK------YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHHHCC------SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred cchhhh------cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 111100 00001111122222222 234677899999888887777666554 55666654
No 107
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=86.73 E-value=4.6 Score=44.30 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=70.7
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCC-------CCCCHHHHHHHHHHHHHCCCEEEEeec-cccc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS-------RSGTPEDLKYLIDKAHSLGLRVLVDIV-HSHA 275 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~-------~~Gt~~dfk~LV~~~H~~GI~VIlDvV-~NH~ 275 (732)
.+.|+.+..+.+|.++|== ....+|.+....|=.+.. .|=|.+|+|+||+-|.++||.||-.+- +.|+
T Consensus 21 k~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~ 96 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHT 96 (348)
T ss_pred HHHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCchhh
Confidence 3578899999999988621 111233333333322211 111799999999999999999999985 7777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 035501 276 SNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEF 335 (732)
Q Consensus 276 ~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~ 335 (732)
..-.. +....... ...++.. ....-....||-.+|++.+++.+++.-.++-|
T Consensus 97 ~a~~~-~~p~l~~~---~~~~~~~----~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 97 GSWGQ-GYPELLTG---CYAVWRK----YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred HHHHH-hChhhhCC---CCccccc----cccCCCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 54210 00000000 0000000 00000123589999999999999999998854
No 108
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=86.66 E-value=2.7 Score=44.20 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=60.3
Q ss_pred ChHhHHHhhhhHHHHCCC--CEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 198 SYREFADDVLPRIRANNY--NTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
+-.++. +.++.+++.|+ ++|+|=.=+.. ..+.++ +..++ +|.. .++||+.+|++|++|++-+.+.
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~-~~~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~- 89 (265)
T cd06589 22 DQDKVL-EVIDGMRENDIPLDGFVLDDDYTD-GYGDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY- 89 (265)
T ss_pred CHHHHH-HHHHHHHHcCCCccEEEECccccc-CCceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh-
Confidence 445554 46788888665 68887654421 112221 13332 4544 5789999999999999966431
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
|++...+.++..+.++|||||=+|...
T Consensus 90 ---------------------------------------------v~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 90 ---------------------------------------------IREWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred ---------------------------------------------HHHHHHHHHHHhhccCCCCEEeccCCC
Confidence 166666666666566899999999764
No 109
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=86.32 E-value=2.6 Score=44.07 Aligned_cols=108 Identities=25% Similarity=0.314 Sum_probs=63.0
Q ss_pred HHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHH---HHHHHHHHCCCEEEEeecccccCCCC
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLK---YLIDKAHSLGLRVLVDIVHSHASNNV 279 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk---~LV~~~H~~GI~VIlDvV~NH~~~~~ 279 (732)
.++.+.-||+.|||.|-|- |+-.|++++ | ++.-|...|++ ++-+.|..+||+|++|+-+...-.+.
T Consensus 65 ~qD~~~iLK~~GvNyvRlR-vwndP~dsn-g---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLR-VWNDPYDSN-G---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEE-EecCCccCC-C---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccCh
Confidence 4567999999999999874 333332211 1 12223445555 45567788999999999765331110
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCc
Q 035501 280 TDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 280 ~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~ 345 (732)
. .......|....|+.-...|-+|-..++....+| ||+ .|++
T Consensus 134 -----a---------------kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi~---pdmV 175 (403)
T COG3867 134 -----A---------------KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GIL---PDMV 175 (403)
T ss_pred -----h---------------hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC---ccce
Confidence 0 0011124543334444556777778888888887 554 5555
No 110
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=86.12 E-value=13 Score=47.23 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=111.8
Q ss_pred CCCCCCC-----CHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHh-hhcceEEEeeccCCCCCCC
Q 035501 310 SRLFNYA-----NWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYN-EYFNATVIAEDVSGMPGLG 383 (732)
Q Consensus 310 ~~~ln~~-----~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~-~~~~~~~iaE~~~~~~~~~ 383 (732)
+..|.|+ +|.++++|.+-.+--.+ -++|||+|.+++.--+ ...-++...+ -.|+.+++||-.++.....
T Consensus 476 cVKLRYG~~peDsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlh---VaeylLd~AR~vnPnLyV~AELFTGSee~D 550 (1464)
T TIGR01531 476 SVKLRYGNKPEDSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIH---VAEYLLDAARKYNPNLYVVAELFTGSETLD 550 (1464)
T ss_pred eeeeccCCCCcCCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHH---HHHHHHHHHhhcCCCeEEEeeecCCcHHHH
Confidence 4567774 68999999998888888 7899999999864100 0111222222 2577999999776543221
Q ss_pred cccccCCceecccccccccHHHHHHHhcCCCCCccHHHHHHHhhcC--------------cCcccceecccccccccccc
Q 035501 384 SPVSMGGIGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNR--------------RYTEKCISYAESHDQAIVGD 449 (732)
Q Consensus 384 ~~~~~~g~gFd~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~--------------~~~~~~v~f~~nHD~~r~g~ 449 (732)
.- |.--.++...+++.+.... ...++++.+....+ ..+..++-|=-.||+..-..
T Consensus 551 -------~~--Fv~rLGInsLIREAm~a~~--~~El~rlv~r~GG~PIGs~~~~~~~~l~~~~~hALfmD~THDNe~P~q 619 (1464)
T TIGR01531 551 -------NV--FVNRLGISSLIREAMSAWD--SHEEGRLVYRYGGRPVGSFKQVSPRILTASIAHALFMDCTHDNESPIE 619 (1464)
T ss_pred -------HH--HHHHhhHHHHHHHHHhcCC--HHHhhhHHHHhCCcccccccccccccccCCCCCceeeecCCCCCCccc
Confidence 11 1111223333444443321 11123333332211 01123343445688764332
Q ss_pred hhhHhhhccHhhhhccccCCCCCcchHHHHHHHHHHHHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccccCCC
Q 035501 450 KTIAFLLMDQEMYTGMSSLTDASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKCRRQW 529 (732)
Q Consensus 450 ~~~~f~l~d~~~y~~~~~~~~~~~~~~~~~~~~kla~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~~~~W 529 (732)
++- ....+-.|+++.|+.-.++ - -+|-.--.|..++...+.+-. ..|
T Consensus 620 kRt-------------------------~~DtLp~aAlVam~~~aiG-S-~~GyDE~~P~~i~vV~E~R~Y------~~~ 666 (1464)
T TIGR01531 620 KRS-------------------------VYDTLPSAALVSMASCAIG-S-NRGYDELVPHHIHVVSEERYY------ISW 666 (1464)
T ss_pred cCC-------------------------ccccchHHHHHHHhcCccc-c-ccCcccccCCcccccCCcccc------CcC
Confidence 221 0123345666777777777 3 466444456666666552211 122
Q ss_pred ccCCcccccchHHHHHHHHHHHHHHhCCCCcCCceEEEeccCCCcEEEEEe
Q 035501 530 NLVDADHLRYKFMNAFGRAMNELDDKFPFLASTKQIVSSTNEEDKVIVFER 580 (732)
Q Consensus 530 ~~~~~~~~~~~~l~~f~r~Li~lR~~~~aL~~g~~~~~~~~~~~~vlaf~R 580 (732)
...... ..+...=+.|++|+..-. ..|+..+.....+..++++.|
T Consensus 667 ~~~~~~----~GI~~~k~~LN~lH~~l~--~~g~~e~~vh~~~~~~itv~R 711 (1464)
T TIGR01531 667 PTGSPS----SGIIKAKAALNKLHTSLG--EKGFIQVYVDQMDGDIVAVTR 711 (1464)
T ss_pred CCCCCC----CcHHHHHHHHHHHHHHHH--HcCCCeEeEeccCCCEEEEEE
Confidence 211111 247777777888887632 234433333333456999999
No 111
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.44 E-value=4.4 Score=36.32 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=41.8
Q ss_pred ccCCcEEeCCcEEEEEEcCC--CCeEEEEeccCC--CCCcccceeeCC----CCEEEEEecCCCCCCCCCCCceEEEEEE
Q 035501 56 LEFGFNREDGGIVYREWAPA--AKEAQLIGDFNG--WDGSNHKMERNE----FGVWSISIPDSGGKPAIPHGSRVKFRFK 127 (732)
Q Consensus 56 ~~lG~~~~~~g~~f~~wAP~--A~~V~L~gdfn~--w~~~~~~m~~~~----~GvW~i~ip~~~g~~~~~~g~~Y~~~~~ 127 (732)
+++|+ +.+++|++++. +++|.|+..-.. +.....+|++.. ...|+++|+.. ..-..|.|++.
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~------~~~~~Y~F~l~ 80 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPP------TGRLRYYFELV 80 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecC------CcEEEEEEEEE
Confidence 36777 67999999885 678888753221 233467887632 35799999843 12235666665
Q ss_pred eCCe
Q 035501 128 HDGV 131 (732)
Q Consensus 128 ~~g~ 131 (732)
.++.
T Consensus 81 ~~~~ 84 (116)
T cd02857 81 DDGE 84 (116)
T ss_pred cCCE
Confidence 4444
No 112
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=85.41 E-value=2.2 Score=37.12 Aligned_cols=56 Identities=14% Similarity=0.331 Sum_probs=37.7
Q ss_pred EEEEEEcC--CCCeEEEEe---ccCCCCCc-ccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEE
Q 035501 67 IVYREWAP--AAKEAQLIG---DFNGWDGS-NHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFK 127 (732)
Q Consensus 67 ~~f~~wAP--~A~~V~L~g---dfn~w~~~-~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~ 127 (732)
++|++=+. -.++|.|+| ++++|+.. .++|+...++.|++++.-.. .....|||.+.
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-----~~~~eYKy~~~ 64 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-----GTAIEYKYIKK 64 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-----CCeEEEEEEEE
Confidence 45666543 357899999 57799863 67898777899988876321 11346677554
No 113
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.26 E-value=2 Score=54.20 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=55.1
Q ss_pred ccccCCcEEeCCcE-EEEEEcCCCCeEEEEeccCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEeCC-e
Q 035501 54 GYLEFGFNREDGGI-VYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDG-V 131 (732)
Q Consensus 54 ~~~~lG~~~~~~g~-~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g-~ 131 (732)
.+.-||.|..++|+ .+|+|-|.|++|.|+.. ....+|++...|+|+..+|.... .....|++++...+ .
T Consensus 519 p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~----~~~~~y~~~~~~~~~~ 589 (1224)
T PRK14705 519 PHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQA----GHVPDYRLEVTYDGAE 589 (1224)
T ss_pred ChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEecccccc----CCCCCeEEEEEeCCcc
Confidence 45679999877884 79999999999999841 23347888778999999984200 01123888887633 3
Q ss_pred Eeeccccccc
Q 035501 132 FIDRIPAWIK 141 (732)
Q Consensus 132 ~~~~~dpya~ 141 (732)
.....|||+.
T Consensus 590 ~~~~~d~y~~ 599 (1224)
T PRK14705 590 PVTIDDPYHY 599 (1224)
T ss_pred ceEecccccc
Confidence 2345688874
No 114
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=84.20 E-value=3.3 Score=45.34 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=66.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL 283 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~ 283 (732)
++-+.-+|++|...|-|+.-+. .+..-|-=..++|..++..+ ..+=+++|+++|+++||++.+ -+.+. .-+ .
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---~ 165 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---H 165 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC---C
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc---C
Confidence 4678899999999999888763 33333333334444444222 358899999999999999998 22222 111 0
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 284 NGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYA-NWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 284 ~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~-~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.. +........ .......-. ...+.+++..-++-.++.|.+|.+=||+..
T Consensus 166 ~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~ 216 (346)
T PF01120_consen 166 PD-----------YPPDEEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW 216 (346)
T ss_dssp TT-----------TTSSCHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT
T ss_pred cc-----------cCCCccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC
Confidence 00 000000000 000000000 012455788889999999999999999885
No 115
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=84.14 E-value=4.4 Score=35.70 Aligned_cols=58 Identities=17% Similarity=0.391 Sum_probs=41.3
Q ss_pred EEEEEEcCC---CCeEEEEec---cCCCCC-cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAPA---AKEAQLIGD---FNGWDG-SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP~---A~~V~L~gd---fn~w~~-~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
++|++-+|. -+.|+|+|+ ..+|+. ..++|+...+..|++.++-..+ ..-..|||.+..
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~----~~~ieYKyvi~~ 66 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKD----SFPFEYKYIIAN 66 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCC----CccEEEEEEEEe
Confidence 789999985 458999985 457875 4678988778899888873210 113478888765
No 116
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=83.83 E-value=3.4 Score=43.07 Aligned_cols=84 Identities=11% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 035501 249 PEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNL 328 (732)
Q Consensus 249 ~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l 328 (732)
..++..++++||++|++|++=|- ++.. + .+. --..++..|+.+++++
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~----------~-------~~~---------------~~~~~~~~r~~fi~~l 91 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP----------P-------EFT---------------AALNDPAKRKALVDKI 91 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC----------C-------cch---------------hhhcCHHHHHHHHHHH
Confidence 46789999999999999998542 1110 0 000 0235678899999999
Q ss_pred HHHHHhcCceEEeecCccccccccccccchhhhhHhhhc
Q 035501 329 RWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367 (732)
Q Consensus 329 ~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~ 367 (732)
.-++++|++||+-+|--..... ... -..|.+++++.+
T Consensus 92 v~~~~~~~~DGIdiDwE~~~~~-~~~-~~~fv~~Lr~~l 128 (253)
T cd06545 92 INYVVSYNLDGIDVDLEGPDVT-FGD-YLVFIRALYAAL 128 (253)
T ss_pred HHHHHHhCCCceeEEeeccCcc-HhH-HHHHHHHHHHHH
Confidence 9999999999999996432100 000 135666666554
No 117
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=83.76 E-value=1.8 Score=51.30 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCeEEEEeccC-C-CCC---cccceeeCCCCEEEEEecCCC-CCCCCCCCceEEEEEEeCCeEeeccccc
Q 035501 66 GIVYREWAPAAKEAQLIGDFN-G-WDG---SNHKMERNEFGVWSISIPDSG-GKPAIPHGSRVKFRFKHDGVFIDRIPAW 139 (732)
Q Consensus 66 g~~f~~wAP~A~~V~L~gdfn-~-w~~---~~~~m~~~~~GvW~i~ip~~~-g~~~~~~g~~Y~~~~~~~g~~~~~~dpy 139 (732)
|..|++|+|.|+.+.+.+.-. + |+. ..+.|.|...|.|...|.+.. .......+..|.|.+...+...+..|++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 559999999999999998542 2 332 345677777899999999742 1112245566777777644446678999
Q ss_pred ccccccCC
Q 035501 140 IKYATVDS 147 (732)
Q Consensus 140 a~~~~~~~ 147 (732)
+|+++.++
T Consensus 148 ~Ksvv~~~ 155 (697)
T COG1523 148 PKSVVIDP 155 (697)
T ss_pred CceEEecc
Confidence 99998887
No 118
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=83.40 E-value=6.8 Score=46.74 Aligned_cols=94 Identities=22% Similarity=0.402 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcc---cCCC-CCCCCC--CCCCCCCCCH
Q 035501 245 RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFH---TGDR-GYHKLW--DSRLFNYANW 318 (732)
Q Consensus 245 ~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~---~~~~-g~~~~w--~~~~ln~~~p 318 (732)
.|++ ++.+|+.+|++|+++|+=+-++=.... . ...|+.. .....+- .+.. -....| ...-.|+.||
T Consensus 349 ~fp~---~~~fv~~Lh~~G~kyvliidP~is~~~-~--y~~y~~g--~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp 420 (805)
T KOG1065|consen 349 WFPD---LKDFVDDLHARGFKYVLIIDPFISTNS-S--YGPYDRG--VAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNP 420 (805)
T ss_pred cCcc---hHHHHHHHHhCCCeEEEEeCCccccCc-c--chhhhhh--hhhceeeecccCchhhhcccCCCcccccccCCc
Confidence 4454 999999999999999876553211111 0 1111111 0011111 1111 111233 2356799999
Q ss_pred HHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 319 EVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 319 ~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
.+.....+.++..-++.++|||=+|+-.
T Consensus 421 ~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 421 AVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred hHHHHHHHHHHhhcccCCccceEEECCC
Confidence 9999999999988889999999999854
No 119
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=83.21 E-value=7.1 Score=42.48 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=72.5
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCC------------CCCCHHHHHHHHHHHHHCCCEEE
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS------------RSGTPEDLKYLIDKAHSLGLRVL 267 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~------------~~Gt~~dfk~LV~~~H~~GI~VI 267 (732)
..|. +.||.+...++|.++|=-.= ..+|......|-.+.. .+=|.+|+++||+-|.++||.||
T Consensus 18 ~~lk-~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 18 AEVK-RYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred HHHH-HHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 3443 57899999999999874321 1234333333322211 12279999999999999999999
Q ss_pred Eeec-ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 035501 268 VDIV-HSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEE 334 (732)
Q Consensus 268 lDvV-~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e 334 (732)
-.+- +.|+..-. .+...+... +.....+.. .......||..+|++.+++.+.+.-.++-
T Consensus 93 PEiD~PGH~~a~~-~~~p~l~~~-~~~~~~~~~------~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 93 PEIDMPGHTNAAL-AAYPELNCD-GKAKPLYTG------IEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred EecCCcHHHHHHH-HhChhhccC-CCCCccccc------cCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9886 67764311 001111100 000011110 01123468999999999999998888874
No 120
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.96 E-value=6.2 Score=42.36 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=68.3
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCc--ccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec-ccccC
Q 035501 200 REFADDVLPRIRANNYNTVQLMAV--MEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV-HSHAS 276 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi--~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV-~NH~~ 276 (732)
..+. +.++.+..+|+|.++|==- |+.+....-++ ....=|.+|++++++-|.++||.||=.+- +.|+.
T Consensus 17 ~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 17 SYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4443 5799999999999997321 11111111111 11122799999999999999999998764 56663
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 035501 277 NNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEF 335 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~ 335 (732)
.- +.. +.|-...+... ....||-.+|++.+++.+.+.-.++-|
T Consensus 88 ~~----l~~--------~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f 130 (301)
T cd06565 88 FI----LKH--------PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELH 130 (301)
T ss_pred HH----HhC--------cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 21 110 01110000000 023688999999999999999999853
No 121
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=82.92 E-value=4.6 Score=43.55 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSN 327 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~ 327 (732)
+.+.+++-|++||++|++|||=+ +.. . .. ....++.-++.+.++
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~------~~-----------------~~~~~~~~~~~fa~s 101 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------N------GH-----------------VDLNHTAQEDNFVDS 101 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------C------Cc-----------------cccCCHHHHHHHHHH
Confidence 56889999999999999999864 100 0 00 013456778889999
Q ss_pred HHHHHHhcCceEEeecCcc
Q 035501 328 LRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 328 l~~Wl~e~giDGfR~D~~~ 346 (732)
+.-++++||+||+=||-=.
T Consensus 102 l~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 102 IVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred HHHHHHHhCCCeEEEeccc
Confidence 9999999999999999653
No 122
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=82.39 E-value=3.8 Score=35.76 Aligned_cols=58 Identities=22% Similarity=0.526 Sum_probs=39.6
Q ss_pred EEEEEEcC--CCCeEEEEeccC---CCCC-cccceeeC----CCCEEEEEecCCCCCCCCCCC--ceEEEEEEe-CCe
Q 035501 67 IVYREWAP--AAKEAQLIGDFN---GWDG-SNHKMERN----EFGVWSISIPDSGGKPAIPHG--SRVKFRFKH-DGV 131 (732)
Q Consensus 67 ~~f~~wAP--~A~~V~L~gdfn---~w~~-~~~~m~~~----~~GvW~i~ip~~~g~~~~~~g--~~Y~~~~~~-~g~ 131 (732)
|+|++-+. -.++|.|+|+.. +|+. ..++|... ...+|++++.- +.+ ..|||.+.. +|.
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~l-------p~~~~~eYKy~i~~~~g~ 74 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDL-------PAGTPFEYKYVIKDADGN 74 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEE-------ETTSEEEEEEEEEETTSE
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEEC-------cCCCEEEEEEEEEeCCCC
Confidence 67888333 356899999765 6986 67899875 35899998852 234 367777765 443
No 123
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=1.8 Score=46.21 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.3
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
.-|+...+.|++-|...=...... .. +-..-|++|++.||+.||+||+||-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~~~~~~--~~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLLIPEED--AE--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeeecccCCch--HH--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 356667789999887432221110 00 124569999999999999999999764
No 124
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=81.84 E-value=3.5 Score=37.77 Aligned_cols=56 Identities=14% Similarity=0.414 Sum_probs=39.1
Q ss_pred cEEEEEEcC---CCCeEEEEec---cCCCCC-cccceeeC--CCCEEEEEecCCCCCCCCCCCceEEEEE
Q 035501 66 GIVYREWAP---AAKEAQLIGD---FNGWDG-SNHKMERN--EFGVWSISIPDSGGKPAIPHGSRVKFRF 126 (732)
Q Consensus 66 g~~f~~wAP---~A~~V~L~gd---fn~w~~-~~~~m~~~--~~GvW~i~ip~~~g~~~~~~g~~Y~~~~ 126 (732)
.++|++-+| -.+.|.|+|+ +.+|+. .+++|+.. ....|++.+.-.. ..-..|+|.+
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-----~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-----GVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-----CCeEEEEEEE
Confidence 378999886 3568999997 788985 46789876 6789988776321 1124566665
No 125
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=80.59 E-value=14 Score=41.15 Aligned_cols=116 Identities=18% Similarity=0.123 Sum_probs=73.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL 283 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~ 283 (732)
++-+.-+|+.|...|-|+.-+. .+..-|-=..++|.+++..+ ..|=+++|+++|+++||++-+ - |...+ +.
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHH-DGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~D--W~- 154 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHH-DGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLFD--WF- 154 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeec-CCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHHH--hC-
Confidence 4678899999999998887763 33333333345666666544 458899999999999999988 2 22111 10
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCceEEeecCc
Q 035501 284 NGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFL---LSNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 284 ~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i---~~~l~~Wl~e~giDGfR~D~~ 345 (732)
.+.|... +.........+...+|+ ..-++-.+..||-|.+=||..
T Consensus 155 ---------~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 155 ---------NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred ---------CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 0111100 00001112334566777 778888889999999999986
No 126
>PLN02316 synthase/transferase
Probab=79.43 E-value=26 Score=43.73 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCChHhHHHhhhhHHHHCCCCEEEECCccc
Q 035501 196 VNSYREFADDVLPRIRANNYNTVQLMAVME 225 (732)
Q Consensus 196 ~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e 225 (732)
+|....++...-..|+++|.+.--+||-+.
T Consensus 603 vGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 603 VGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 456666665545578999999999999875
No 127
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=78.91 E-value=6.3 Score=42.29 Aligned_cols=119 Identities=17% Similarity=0.101 Sum_probs=72.4
Q ss_pred hHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCC-----------CCCCCHHHHHHHHHHHHHCCCEEE
Q 035501 199 YREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAAS-----------SRSGTPEDLKYLIDKAHSLGLRVL 267 (732)
Q Consensus 199 ~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~-----------~~~Gt~~dfk~LV~~~H~~GI~VI 267 (732)
...+. +.|+.+..+++|.++|==. ...+|.+....|-.+. ..+=|.+|+++||+-|.++||.||
T Consensus 15 ~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 15 VESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred HHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 34443 5799999999999986321 1122333333322221 112268999999999999999999
Q ss_pred Eeec-ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 035501 268 VDIV-HSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLW--DSRLFNYANWEVLRFLLSNLRWWIEEF 335 (732)
Q Consensus 268 lDvV-~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w--~~~~ln~~~p~v~~~i~~~l~~Wl~e~ 335 (732)
-.|- +.|+..-.. ....... ..+- + ..| ....||..+|++.+++.+.+.-+++-|
T Consensus 90 PEiD~PGH~~a~~~-~~p~l~~-----~~~~-----~--~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 90 PEIDMPGHSTAFVK-SFPKLLT-----ECYA-----G--LKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred EeccchHHHHHHHH-hCHHhcc-----Cccc-----c--CCCCCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 9985 777753110 0000000 0000 0 011 123689999999999999999999843
No 128
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=77.77 E-value=13 Score=40.35 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeec-ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIV-HSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLS 326 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV-~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~ 326 (732)
|.+|+|+||+-|.++||.||-.|- +.|+..-. .....+. .... ...-....||..+|++.+++.+
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~-~~~pel~-----------~~~~--~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT-KAMPELG-----------LKNP--FSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH-HhhHHhc-----------CCCc--ccCCCcccccCCCHHHHHHHHH
Confidence 799999999999999999998885 67764310 0000000 0000 0011234689999999999999
Q ss_pred HHHHHHHhcC
Q 035501 327 NLRWWIEEFK 336 (732)
Q Consensus 327 ~l~~Wl~e~g 336 (732)
.+.-.++-|.
T Consensus 146 l~~E~~~~f~ 155 (326)
T cd06564 146 LFDEYLDGFN 155 (326)
T ss_pred HHHHHHHhcC
Confidence 9999888554
No 129
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=76.88 E-value=3.4 Score=44.73 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=34.8
Q ss_pred HhhhhHHHHCCCCEEEECCccc-ccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 204 DDVLPRIRANNYNTVQLMAVME-HSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e-~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
+++|..+|++|+|+|..-=... |.... | .-| |....||.+|++.|+++||.|||-.=
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~--g--~~d-------f~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE--G--QFD-------FTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT--T--B----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC--C--ccc-------ccchhhHHHHHHHHHHcCcEEEeccc
Confidence 3579999999999998532111 11100 0 112 23358999999999999999999754
No 130
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.50 E-value=25 Score=37.98 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=70.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCC-----CCCCCHHHHHHHHHHHHHCCCEEEEeec-ccccCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAAS-----SRSGTPEDLKYLIDKAHSLGLRVLVDIV-HSHASN 277 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~-----~~~Gt~~dfk~LV~~~H~~GI~VIlDvV-~NH~~~ 277 (732)
.+.|+.+..+++|.++|==. ...+|.+....|-.+. ..+=|.+|+|+||+-|.++||.||-.|- +.|+..
T Consensus 21 k~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~~a 96 (311)
T cd06570 21 KRQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHASA 96 (311)
T ss_pred HHHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccchHH
Confidence 36799999999998776311 1122333333332221 1122799999999999999999999885 677753
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHh
Q 035501 278 NVTDGLNGFDVGQSSQESYFHTGDRGYHKLWD--SRLFNYANWEVLRFLLSNLRWWIEE 334 (732)
Q Consensus 278 ~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e 334 (732)
-. .+...+... ...+ .....|+ .+.||-.+|++.+++.+.+.-+++-
T Consensus 97 ~~-~~ypel~~~---~~~~------~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~l 145 (311)
T cd06570 97 IA-VAYPELASG---PGPY------VIERGWGVFEPLLDPTNEETYTFLDNLFGEMAEL 145 (311)
T ss_pred HH-HhCHHhccC---CCcc------ccccccccCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 11 011111100 0000 0011232 2468999999999999999888874
No 131
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=72.96 E-value=22 Score=39.05 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeec-ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIV-HSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLS 326 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV-~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~ 326 (732)
|.+|+|+||+-|.++||.||-.|- +.|+..-. .+...+... .....+.. ........||-.+|++.+++.+
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l-~~~pel~~~-~~~~~~~~------~~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAAL-AAYPELGCT-GGPGSVVS------VQGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHH-HhCccccCC-CCCCcccc------ccCcCCCccCCCChhHHHHHHH
Confidence 689999999999999999999885 67774311 001111100 00000000 0011234689999999999999
Q ss_pred HHHHHHHhc
Q 035501 327 NLRWWIEEF 335 (732)
Q Consensus 327 ~l~~Wl~e~ 335 (732)
.+.-.++-|
T Consensus 156 ll~E~~~lF 164 (357)
T cd06563 156 VLDEVAELF 164 (357)
T ss_pred HHHHHHHhC
Confidence 999888743
No 132
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=71.87 E-value=12 Score=34.14 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=44.1
Q ss_pred EeCCcEEEEEEcC--CCCeEEEE-eccCCC----CCcccceee----CCCCEEEEEecCCCCCCCCCCCceEEEEEEeCC
Q 035501 62 REDGGIVYREWAP--AAKEAQLI-GDFNGW----DGSNHKMER----NEFGVWSISIPDSGGKPAIPHGSRVKFRFKHDG 130 (732)
Q Consensus 62 ~~~~g~~f~~wAP--~A~~V~L~-gdfn~w----~~~~~~m~~----~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~~g 130 (732)
..++.+++|+++. .+++|.|+ ++-..| .....+|++ ...+.|+++|+.. .....|.|+|..+|
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~------~~r~~Y~F~l~~~~ 91 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLP------EKRLRYYFELEDGG 91 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-T------TSEEEEEEEEEETT
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECC------CCeEEEEEEEEeCC
Confidence 3566788899886 68899996 444433 234568876 3468999999853 22367888888766
Q ss_pred eEe
Q 035501 131 VFI 133 (732)
Q Consensus 131 ~~~ 133 (732)
+.+
T Consensus 92 ~~~ 94 (120)
T PF02903_consen 92 ETY 94 (120)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 133
>TIGR03356 BGL beta-galactosidase.
Probab=71.59 E-value=27 Score=39.48 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 196 VNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 196 ~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
+..|.-.. +-|+.||+||+|++-+.=-. +.--.-|-.. ..-...+-.+++|++|+++||++|+++.+
T Consensus 50 ~d~y~~y~-eDi~l~~~~G~~~~R~si~W--sri~p~g~~~-------~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 50 CDHYHRYE-EDVALMKELGVDAYRFSIAW--PRIFPEGTGP-------VNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred ccHHHhHH-HHHHHHHHcCCCeEEcccch--hhcccCCCCC-------cCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 33455554 56999999999999753211 1100001000 11123577899999999999999999984
No 134
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=71.37 E-value=11 Score=45.20 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHCCCEEEEeeccc--ccCCCCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHH--HH
Q 035501 250 EDLKYLIDKAHSLGLRVLVDIVHS--HASNNVTDGLNGF--DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVL--RF 323 (732)
Q Consensus 250 ~dfk~LV~~~H~~GI~VIlDvV~N--H~~~~~~~~~~~~--d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~--~~ 323 (732)
..++++-+.|+++||.+|-|+.+- +-|.+.......| +...+.++.+|... ...||.+.+|+..=+-. +.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~----GQnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN----GQNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc----cCcCCCCCcCHHHHHhcCcHH
Confidence 678888899999999999999864 3332221111112 22345667777542 35799888876421111 22
Q ss_pred HHHHHHHHHHhcCceEEeecCcc
Q 035501 324 LLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 324 i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
..+.+++-++ .+|++|+|.+-
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~ 370 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHIL 370 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechh
Confidence 3344444333 57999999874
No 135
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=69.37 E-value=14 Score=39.82 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 035501 252 LKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWW 331 (732)
Q Consensus 252 fk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~W 331 (732)
..++++.||++|++|++=|- +... . .++ ...|+ --.+++..|+-+++++.-+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~------~~~~~--------------~~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFD------SELAH--------------AVLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCC------HHHHH--------------HHhcCHHHHHHHHHHHHHH
Confidence 36899999999999997553 2111 0 011 00010 0135678899999999999
Q ss_pred HHhcCceEEeecCccccccccccccchhhhhHhhhc
Q 035501 332 IEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367 (732)
Q Consensus 332 l~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~ 367 (732)
+++||+||+-+|--. +...+...-..|+++++..+
T Consensus 99 l~~~~~DGidiDwE~-~~~~d~~~~~~fl~~lr~~l 133 (313)
T cd02874 99 AKKYGYDGVNIDFEN-VPPEDREAYTQFLRELSDRL 133 (313)
T ss_pred HHHhCCCcEEEeccc-CCHHHHHHHHHHHHHHHHHh
Confidence 999999999999643 11111110135666666554
No 136
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=69.30 E-value=2.4 Score=49.65 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=52.0
Q ss_pred HHHHHHcCCCCeEeecCCCCCCCCccCCCCCCCcCccccc----------cCCCccCCcccccchHHHHHHHHHHHHHHh
Q 035501 486 HFITMALGGEGYLNFMGNEFGHPEWIDFPREGNEWSYEKC----------RRQWNLVDADHLRYKFMNAFGRAMNELDDK 555 (732)
Q Consensus 486 ~~ll~t~pG~P~liy~G~E~G~~~~~d~p~~g~~~s~~~~----------~~~W~~~~~~~~~~~~l~~f~r~Li~lR~~ 555 (732)
.++-+|.||+| =+|+|.|.=..-.+| +-|..+-+.. .-+|++..... ..-=.....+++++|++
T Consensus 712 ~LlkltaPGVP-D~YQGtE~wd~SLVD---PDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~--Dg~K~~v~~~aL~lR~~ 785 (889)
T COG3280 712 TLLKLTAPGVP-DIYQGTELWDFSLVD---PDNRRPVDFATRAQALKALQEGDFELLEHWL--DGIKQAVTAAALRLRRE 785 (889)
T ss_pred HHHHHcCCCCC-ccccchhhhhccccC---CCCCCCCcHHHHHHHHhcCCCCchhHHHHhh--hhHHHHHHHHHHHHHHh
Confidence 45679999999 559999976532222 1222221110 01111111000 00012356789999999
Q ss_pred CCCCcCCceEEEec---cCCCcEEEEEeCc----EEEEEEC
Q 035501 556 FPFLASTKQIVSST---NEEDKVIVFERGD----LVFVFNF 589 (732)
Q Consensus 556 ~~aL~~g~~~~~~~---~~~~~vlaf~R~~----~lvv~N~ 589 (732)
+|.+-.+..+.-.. ...+.|+||.|++ +++|.+.
T Consensus 786 ~~elF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 786 HPELFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred chHhhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 99854443232222 2346799999953 5666653
No 137
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=69.24 E-value=10 Score=40.42 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=36.6
Q ss_pred hhhhHHHHCCCCEEEECCccccccc---CCCCccc--------CccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYY---ASFGYHV--------TNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~---~~~GY~~--------~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
.-|+.+|+-|||+|+++=+-+.... +..|+.+ .||..+++.| -+-+.++|+.|.++||.+- +|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~--lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA--LVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE--EESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE--EEEE
Confidence 4599999999999998776653211 1223222 2343444333 4789999999999999984 6655
Q ss_pred c
Q 035501 274 H 274 (732)
Q Consensus 274 H 274 (732)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 138
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.78 E-value=43 Score=38.09 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeec-ccccCCCCC---CCCCCCC--CCCCCCCCC-cccCC--CCCC--CCCCCCCCCCC
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIV-HSHASNNVT---DGLNGFD--VGQSSQESY-FHTGD--RGYH--KLWDSRLFNYA 316 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV-~NH~~~~~~---~~~~~~d--~~~~~~~~y-f~~~~--~g~~--~~w~~~~ln~~ 316 (732)
|.+|+|+||+-|+++||.||-.|- +.|+..--. .....+- +.......| +.... ..+. ..|....||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 799999999999999999999885 778753100 0000000 000000011 11100 0011 12334578999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 035501 317 NWEVLRFLLSNLRWWIE 333 (732)
Q Consensus 317 ~p~v~~~i~~~l~~Wl~ 333 (732)
+|++.+++.+.+.-.++
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999988887
No 139
>PLN03059 beta-galactosidase; Provisional
Probab=68.76 E-value=8.2 Score=46.62 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=39.0
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCC---CCCCHHHHHHHHHHHHHCCCEEEEee
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS---RSGTPEDLKYLIDKAHSLGLRVLVDI 270 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~---~~Gt~~dfk~LV~~~H~~GI~VIlDv 270 (732)
++|..+|++|+|+|..= -.|.++ .+.+ .|.+..||.++++.|++.||.|||=.
T Consensus 63 d~L~k~Ka~GlNtV~tY--------V~Wn~H-----Ep~~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTY--------VFWNGH-----EPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHcCCCeEEEE--------eccccc-----CCCCCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 57889999999999842 123222 1111 34568999999999999999999953
No 140
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.71 E-value=13 Score=38.32 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=35.1
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEe
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVD 269 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlD 269 (732)
+-|.++|+||+++|+++-=+ . .+ +.++..++|+.+|++|++|+-.
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~------------~---~i-----~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGS------------M---EI-----SLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCc------------c---CC-----CHHHHHHHHHHHHhCCCeEecc
Confidence 34569999999999986422 0 11 3689999999999999999854
No 141
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=68.03 E-value=15 Score=32.33 Aligned_cols=57 Identities=14% Similarity=0.396 Sum_probs=38.1
Q ss_pred EEEEEEcCC--CCeEEEEec---cCCCCC-cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAPA--AKEAQLIGD---FNGWDG-SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP~--A~~V~L~gd---fn~w~~-~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
++|++-++. -+.|.|+|+ ..+|+. ..++|...++..|++.+.-.. .....|+|.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-----~~~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-----SVYIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-----CCcEEEEEEEEe
Confidence 456665553 368999986 457875 467898777889988775321 223678887753
No 142
>PTZ00445 p36-lilke protein; Provisional
Probab=67.90 E-value=11 Score=37.96 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=42.1
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEE------CCcccccccCCCCcccCccccCCCCCCC--HHHHHHHHHHHHHCCCEEEE
Q 035501 198 SYREFADDVLPRIRANNYNTVQL------MAVMEHSYYASFGYHVTNFFAASSRSGT--PEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L------~Pi~e~~~~~~~GY~~~~y~av~~~~Gt--~~dfk~LV~~~H~~GI~VIl 268 (732)
+..+.++...+.|+++||.+|-+ ++++ +-||+-.+ +-+..+++ ..+|+.|++++.+.||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H------sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKH------SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhh------cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34555666788899999999963 3332 22444332 22334432 35699999999999999975
No 143
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=67.87 E-value=81 Score=33.42 Aligned_cols=121 Identities=19% Similarity=0.173 Sum_probs=70.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHH-HHHH-HHHHHCCCEEEEeecccccCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDL-KYLI-DKAHSLGLRVLVDIVHSHASNNVTD 281 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~df-k~LV-~~~H~~GI~VIlDvV~NH~~~~~~~ 281 (732)
+..|++|+++|+|+|+|-++.+..+.+. .+. -|=++.++--..|| -+.+ +...+.|++|..=+..=
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~--~~~--~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvl-------- 87 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN--ADA--VYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVL-------- 87 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc--eee--EEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehh--------
Confidence 4679999999999999999986443322 222 22344455445554 4445 34448899998766531
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEee
Q 035501 282 GLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRF 342 (732)
Q Consensus 282 ~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~ 342 (732)
.|+............. .. ..-+..-|.--+|++|+.|.+...-...--.|||+=|
T Consensus 88 ---af~lp~~~~~~~~~~~-~~--~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 88 ---AFDLPKVKRADEVRTD-RP--DPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred ---hccCCCcchhhhcccc-CC--CCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 1111100000000000 00 0001123455579999999999999988449999988
No 144
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=67.66 E-value=11 Score=45.30 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccC----CCCcccCccccCCCCCCCHHHHH
Q 035501 194 PRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYA----SFGYHVTNFFAASSRSGTPEDLK 253 (732)
Q Consensus 194 ~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~----~~GY~~~~y~av~~~~Gt~~dfk 253 (732)
-++|+|..+. +.++.+++.|.+.|+|+||.+....+ +.-|.+.+=|+.+|-|=+++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 4689999965 68999999999999999998753222 24689999999999887776663
No 145
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=67.57 E-value=8.3 Score=41.15 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=30.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
..-+++||+||+|+|-+--|- |.. .-+++ .+++.+.||.||+|+---+.+
T Consensus 56 ~rDi~~l~~LgiNtIRVY~vd-------------------p~~-nHd~C---M~~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVYSVD-------------------PSK-NHDEC---MSAFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHHT-SEEEES----------------------TTS---HHH---HHHHHHTT-EEEEES-BTTBS
T ss_pred HHhHHHHHHcCCCEEEEEEeC-------------------CCC-CHHHH---HHHHHhCCCEEEEecCCCCcc
Confidence 346999999999999875554 221 12333 445667999999999866544
No 146
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=67.13 E-value=23 Score=30.81 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=37.5
Q ss_pred EEEEEEcCCC---CeEEEEec---cCCCCCcccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAPAA---KEAQLIGD---FNGWDGSNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP~A---~~V~L~gd---fn~w~~~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
++|++-+|.- +.+.|+|+ ..+|+. ..+|...+.+.|++.+.-.. .....|+|.+..
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp~-----~~~ieYky~~~~ 64 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLPV-----DTHVEWKFVLVE 64 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEecC-----CCcEEEEEEEEc
Confidence 6788877742 55778884 347885 78998777889987775321 124577776643
No 147
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=65.84 E-value=18 Score=31.53 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=36.6
Q ss_pred CcEEEEEeCc----EEEEEECCCCCccccEEEecC-----CCCcEEEEecCCCCcccCCCCcCCccccccCCCCCCCccc
Q 035501 573 DKVIVFERGD----LVFVFNFHPENTYEGYKVGCD-----LPGKYRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAE 643 (732)
Q Consensus 573 ~~vlaf~R~~----~lvv~N~s~~~~~~~~~i~~p-----~~g~~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 643 (732)
+..+||.|+. +++|++.....+...+.+.++ ..-++.+||+.....-
T Consensus 6 ~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv------------------------ 61 (91)
T PF09260_consen 6 DSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV------------------------ 61 (91)
T ss_dssp TTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE-------------------------
T ss_pred CcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE------------------------
Confidence 4599999976 888887765523456777765 2234666665432211
Q ss_pred cccCCCCcEEEEEeCcceEEEEEEe
Q 035501 644 TNFNNRPNSFRVLSPPRTSVVYYRV 668 (732)
Q Consensus 644 ~~~~~~~~~~~v~lP~~s~~Vl~~~ 668 (732)
+..+.+.|.+-..-=.||.+.
T Consensus 62 ----~~~G~l~v~m~~G~P~Vl~P~ 82 (91)
T PF09260_consen 62 ----DSNGTLTVPMSNGEPRVLYPA 82 (91)
T ss_dssp -----TTS-EEEEESTT--EEEEEC
T ss_pred ----CCCCEEEEEEcCCceEEEEEH
Confidence 223557777777777777764
No 148
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=64.99 E-value=11 Score=42.22 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=40.2
Q ss_pred HHhhhhHHHHCCCCEEEECCcccccccCCCCcccCcccc-CCCCCC---CHHHHHHHHHHHHHCCCEEEEeec
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFA-ASSRSG---TPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~a-v~~~~G---t~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
+++-+.++|+.|+|+|-| |+ ||+...... .+|.+= ...-+.+.|+.|.+.||+|+||+.
T Consensus 75 ~~~~~~~ik~~G~n~VRi-Pi---------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRI-PI---------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEc-cc---------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 356799999999999985 33 233211000 344442 233577789999999999999984
No 149
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=64.40 E-value=8.6 Score=41.93 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=69.3
Q ss_pred HhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCC------C----CCCCHHHHHHHHHHHHHCCCEEEEe
Q 035501 200 REFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAAS------S----RSGTPEDLKYLIDKAHSLGLRVLVD 269 (732)
Q Consensus 200 ~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~------~----~~Gt~~dfk~LV~~~H~~GI~VIlD 269 (732)
..|. +.|+.+..+++|+++|=-- ...+|.+....|-.+. + .+=|.+|+++||+-|+++||.||-.
T Consensus 18 ~~ik-~~id~ma~~k~N~lhlhl~----D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 18 DTIK-RLIDQMAYYKLNVLHLHLS----DDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHH-HHHHHHHHTT-SEEEEEEE----SSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHH-HHHHHHHHcCCcEEEEEEe----cCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 4443 5799999999999997322 1122332222221111 0 0236899999999999999999998
Q ss_pred ec-ccccCCCCCCCCCCCCCC-CCCCCCCcccCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 035501 270 IV-HSHASNNVTDGLNGFDVG-QSSQESYFHTGDRGYHKLWD--SRLFNYANWEVLRFLLSNLRWWIEEFK 336 (732)
Q Consensus 270 vV-~NH~~~~~~~~~~~~d~~-~~~~~~yf~~~~~g~~~~w~--~~~ln~~~p~v~~~i~~~l~~Wl~e~g 336 (732)
|- +.|+..-.. +...+... ......+.. ...+. ...||..+|++.+++.+.+.-.++-|.
T Consensus 93 id~PGH~~~~l~-~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 93 IDTPGHAEAWLK-AYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEESSS-HHHHH-HHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchHHHHHHH-hCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 85 777753210 00000000 000001110 01111 135899999999999999999998655
No 150
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=63.07 E-value=24 Score=30.38 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=28.9
Q ss_pred CCCeEEEEeccCCCCCc-ccceeeCC----CCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 75 AAKEAQLIGDFNGWDGS-NHKMERNE----FGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 75 ~A~~V~L~gdfn~w~~~-~~~m~~~~----~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
+|.+|.|.+-||.|... .+.|++.. .|.|+++|.-. ..+....|.+..
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP------~~a~~~dfvF~d 69 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVP------EDAYVMDFVFND 69 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--------TTTSEEEEEEE-
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEc------CCceEEEEEEcC
Confidence 58899999889999764 67787755 79999988421 234456666653
No 151
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=62.54 E-value=21 Score=31.39 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=36.2
Q ss_pred EEEEEEcCC---CCeEEEEe---ccCCCCCcccceee---CCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAPA---AKEAQLIG---DFNGWDGSNHKMER---NEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP~---A~~V~L~g---dfn~w~~~~~~m~~---~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
|+|++-+|. .+.|+|+| ++.+|+....+|.. ..++.|++.+.-..+ .-..|||.+..
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~-----~~veyKyv~~~ 70 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAG-----RNIEFKAIKKS 70 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCC-----CcEEEEEEEEc
Confidence 678886554 46899999 67789865433432 335899888864221 13467776654
No 152
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=61.38 E-value=37 Score=35.52 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 035501 246 SGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLL 325 (732)
Q Consensus 246 ~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~ 325 (732)
.+...++.+=|++|++.|++|||=| +. .. ... |. .+ -++++-|+-++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~KVllSi-----GG--------~~-----~~~-fs-------------~~-a~~~~~r~~f~ 101 (256)
T cd06546 55 HPRFTTLWTELAILQSSGVKVMGML-----GG--------AA-----PGS-FS-------------RL-DDDDEDFERYY 101 (256)
T ss_pred cchhhHHHHHHHHHHhCCCEEEEEE-----CC--------CC-----CCC-cc-------------cc-cCCHHHHHHHH
Confidence 3344566666778999999999843 10 00 000 11 01 13455566667
Q ss_pred HHHHHHHHhcCceEEeecCc
Q 035501 326 SNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 326 ~~l~~Wl~e~giDGfR~D~~ 345 (732)
+++.-++++|++||+-+|--
T Consensus 102 ~s~~~~~~~~~~DGiDiDwE 121 (256)
T cd06546 102 GQLRDMIRRRGLDGLDLDVE 121 (256)
T ss_pred HHHHHHHHHhCCCceEEeee
Confidence 78888899999999999864
No 153
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=59.64 E-value=22 Score=38.35 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=37.1
Q ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccc
Q 035501 304 YHKLW-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 304 ~~~~w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~ 348 (732)
..+.| +...+|+.+|+.+++|++-+...++ -|+|||=+|.+...
T Consensus 128 ~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy 172 (315)
T TIGR01370 128 EDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAF 172 (315)
T ss_pred CCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhh
Confidence 34678 7788999999999999988877666 59999999998764
No 154
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=57.64 E-value=17 Score=32.98 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=29.0
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
.+.++.+.++|+..||+.|= .+-.++++.|+++||+|+-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 46799999999999999883 4456889999999999973
No 155
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=56.89 E-value=39 Score=26.69 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=32.7
Q ss_pred EEEEEECCCCCccccEEEecCCCCc-EEEEecCCCCcccCCCCcCCccccccCCCCCCCccccccCCCCcEEEEEeCcce
Q 035501 583 LVFVFNFHPENTYEGYKVGCDLPGK-YRVALDSDAWGFGGDGRVGHNIDHFTSPEGIPGVAETNFNNRPNSFRVLSPPRT 661 (732)
Q Consensus 583 ~lvv~N~s~~~~~~~~~i~~p~~g~-~~~~l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~s 661 (732)
|+|++|.++. .....++...+|+ |.+++ |.... + + ..+..+...+.+||+|
T Consensus 1 L~v~iN~~~~--~k~~~Vgt~~ag~~~~D~t--------Gn~~~----~-v-------------tid~dG~~~f~v~~~s 52 (57)
T PF09154_consen 1 LAVYINGSAG--WKRMWVGTNWAGKTFYDYT--------GNSSE----T-V-------------TIDEDGWGEFPVPPGS 52 (57)
T ss_dssp EEEEEE-SSS--EEEEEEEGGGTTEEEEETT--------SSSSS----E-E-------------EE-TTSEEEEEE-TTE
T ss_pred CEEEEeCCCC--eEEEEEccccCCCEEEEcc--------CCCCC----e-E-------------EECCCeEEEEEECCCE
Confidence 5677798875 4567777766663 44443 32210 0 1 1134477899999999
Q ss_pred EEEEE
Q 035501 662 SVVYY 666 (732)
Q Consensus 662 ~~Vl~ 666 (732)
..||.
T Consensus 53 ~SVWs 57 (57)
T PF09154_consen 53 VSVWS 57 (57)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99983
No 156
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=55.80 E-value=22 Score=36.78 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=34.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
++-|.++|+|||++|+++==+ -. + +.++..++|+.+.++|++|+-.+=
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGt----------i~-----l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGT----------ID-----L-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SS----------S-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecCCc----------ee-----C-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 356899999999999975321 11 1 368899999999999999987654
No 157
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=55.04 E-value=42 Score=28.84 Aligned_cols=57 Identities=16% Similarity=0.465 Sum_probs=37.1
Q ss_pred EEEEEEc--CCCCeEEEEeccC---CCCC-cccceeeCC-CCEEEEEecCCCCCCCCCCC--ceEEEEEEe
Q 035501 67 IVYREWA--PAAKEAQLIGDFN---GWDG-SNHKMERNE-FGVWSISIPDSGGKPAIPHG--SRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wA--P~A~~V~L~gdfn---~w~~-~~~~m~~~~-~GvW~i~ip~~~g~~~~~~g--~~Y~~~~~~ 128 (732)
+.|++-+ .--+.+.|+|+.. +|+. .+++|+..+ ++.|++.++-. ...+ ..|||.+..
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~-----~~~~~~~~yKy~~~~ 67 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLP-----APEGQVIEYKYVIVD 67 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEec-----CCCCCeEEEEEEEEC
Confidence 4566654 3356899998654 7875 568898776 89999888732 1124 456776654
No 158
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=53.85 E-value=32 Score=34.26 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=30.0
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEE
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRV 266 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~V 266 (732)
+.-+..||+||.+.|-.+|+-- +-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 4568999999999999999851 124799999999999999876
No 159
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.83 E-value=25 Score=41.12 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=41.2
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
+++|..+|++|+|+|+- .|+=+ -|--.+..| .|...-||-+||+++|+.|+-|||=+=+
T Consensus 52 ~~~i~k~k~~Gln~Iqt-YVfWn----~Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQT-YVFWN----LHEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeee-eeecc----cccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 46789999999999984 23210 110011111 3677899999999999999999997653
No 160
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=52.58 E-value=58 Score=32.27 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHC--CCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 035501 248 TPEDLKYLIDKAHSL--GLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLL 325 (732)
Q Consensus 248 t~~dfk~LV~~~H~~--GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~ 325 (732)
..+.....++++|++ |++|++=+--... ...+ --..++..|+.++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~~------------------~~~~---------------~~~~~~~~~~~f~ 93 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWTD------------------SSPF---------------TLASDPASRAAFA 93 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCCC------------------CCCc---------------hhhcCHHHHHHHH
Confidence 345667777888887 9999985521000 0000 1134667888889
Q ss_pred HHHHHHHHhcCceEEeecCcc
Q 035501 326 SNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 326 ~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+++.-+++++++||+-+|--.
T Consensus 94 ~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred HHHHHHHHHcCCCceEEeeeC
Confidence 999999999999999999653
No 161
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=52.02 E-value=89 Score=33.41 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred hHHHHCCCCEEEECCcccc-cccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCC
Q 035501 208 PRIRANNYNTVQLMAVMEH-SYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGF 286 (732)
Q Consensus 208 dyLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~ 286 (732)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|++|+++|.+||+=+ + +.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~-----G--------G~ 77 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF-----G--------GA 77 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe-----c--------CC
Confidence 4677899999987633321 122344311 011235678889999999999999821 0 00
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 287 DVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 287 d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
. ..++.. ...-++.+.+++.-.++.|++||+-||-=.
T Consensus 78 ~------g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~ 114 (294)
T cd06543 78 S------GTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDIEG 114 (294)
T ss_pred C------CCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEeccC
Confidence 0 011110 123466777777778899999999998654
No 162
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=51.18 E-value=22 Score=39.39 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=47.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
+++|..|+++|+|.|.| +|..+. ..-.-.+ .+-.+.++..+.++.+++.||. |.+|++++.-+.+
T Consensus 108 ~e~l~~l~~~G~~rvsl-GvQS~~--------~~~L~~l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSL-GMQSAA--------PHVLAVL-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 46899999999999986 343221 1111112 3445789999999999999999 9999999876554
No 163
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=49.93 E-value=84 Score=33.20 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=55.7
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCc-ccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGY-HVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY-~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
++.... +-+|+-+++|+..|.+ +-.-++ |++ ...|+..+.+. .++++||+=++++|++|+|=+..+ ++
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlv----D~GW~~-~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~~-~~ 98 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLV----DAGWYG-WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHSE-TG 98 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEE----BTTCCG-S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEECC-HT
T ss_pred CHHHHH-HHHHHHHHcCCCEEEe----cccccc-ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeCC-cc
Confidence 556554 5799999999999988 211111 121 23444444443 789999999999999999833221 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCccc
Q 035501 277 NNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTS 347 (732)
Q Consensus 277 ~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~ 347 (732)
. + ..| +.+.+ +.+.-++++.||.|+-+|-+..
T Consensus 99 ~-------------------------------~--~~~-----~~~~~-~~~f~~~~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 99 G-------------------------------N--VAN-----LEKQL-DEAFKLYAKWGVKGVKIDFMDR 130 (273)
T ss_dssp T-------------------------------B--HHH-----HHCCH-HHHHHHHHHCTEEEEEEE--SS
T ss_pred h-------------------------------h--hHh-----HHHHH-HHHHHHHHHcCCCEEeeCcCCC
Confidence 0 0 111 33344 4555556669999999998864
No 164
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=47.86 E-value=53 Score=33.34 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=40.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCccc--CccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHV--TNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~--~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
++..+.|+++|+..|+|+|.+.... ..|.- ..|-..+-..=+.++++++.+.+.++|+.|++
T Consensus 148 ~~ia~~l~~l~~~~~~llpyh~~g~---~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 148 QQALDVLIPLGIKQIHLLPFHQYGE---PKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHcCCceEEEecCCccch---hHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 3567788999999999999885421 11211 11111111112578999999999999999975
No 165
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=47.22 E-value=34 Score=39.37 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCC-EEEEeeccccc
Q 035501 203 ADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGL-RVLVDIVHSHA 275 (732)
Q Consensus 203 ~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI-~VIlDvV~NH~ 275 (732)
.+++|..|++.|++.|.|.|=- + +..-.-.+ .+-.|.+++.+.++.|++.|+ .|-+|+.+.--
T Consensus 268 t~e~L~~Lk~~Gv~RISIGvQS-~--------~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLP 331 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINPQT-M--------NDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLP 331 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcCCc-C--------CHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 3578999999999999976522 1 11112233 445689999999999999999 78899997643
No 166
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.96 E-value=20 Score=39.33 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=37.5
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
++.... +-|...+++|++.|...=.. +.. +..+ ..+.|++|++.||+.||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTSL~i--pe~-----~~~~---------~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTSLHI--PED-----DPED---------YLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEEE-------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECCCCc--CCC-----CHHH---------HHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 344443 46777788999999854211 100 0111 26899999999999999999999854
No 167
>PRK15447 putative protease; Provisional
Probab=46.79 E-value=53 Score=35.22 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=37.9
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
|++..| .-.|++.|+++|||--.. ++-.. +| +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~----~~~~~~~gaDaVY~g~~~-~~~R~-------~f--------~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDF----YQRAADSPVDIVYLGETV-CSKRR-------EL--------KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHH----HHHHHcCCCCEEEECCcc-CCCcc-------CC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 455555 456889999999997311 11111 22 689999999999999999987
No 168
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=46.52 E-value=34 Score=37.60 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=47.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
+++|..|+++|||.|.|-. ..+ +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+..-+.+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-qS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-QSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-ccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 4679999999999998643 211 11222233 4567899999999999999995 7899998876554
No 169
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.20 E-value=37 Score=35.57 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=35.4
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
+.++.++++|++.|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 57999999999999996431100 0111111 467889999999999999863
No 170
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=44.80 E-value=12 Score=38.44 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=39.7
Q ss_pred hhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 206 VLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 206 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
-.....++|.+.|-++.-+..-....|.| -.+++++++++||+.||+||+...+.
T Consensus 81 ~ve~A~~~GAd~vd~vi~~~~~~~~~~~~-------------~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 81 EVEEAIRLGADEVDVVINYGALGSGNEDE-------------VIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHTT-SEEEEEEEHHHHHTTHHHH-------------HHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHcCCceeeeeccccccccccHHH-------------HHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 37788999999999887663221122222 16899999999999999999986553
No 171
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.14 E-value=57 Score=34.00 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.3
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVL 267 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VI 267 (732)
++.|+.++++||+.|+|.+-. +..| . +. .+..++++|-+.+.+.||+|.
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~-----------~~~~-~--~~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGR-----------PHAF-A--PD-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCC-----------cccc-c--cc-cCchHHHHHHHHHHHcCCeEE
Confidence 467999999999999984311 1111 1 11 134678889999999999984
No 172
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=40.03 E-value=25 Score=37.56 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeec
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
++++++++.+-||++||.|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 379999999999999999999976
No 173
>PRK07094 biotin synthase; Provisional
Probab=39.24 E-value=49 Score=35.65 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=45.7
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
++.+..||+.|++.|.+ .+-. .++.-|-.+.+ -.+.++..+.++.+|+.||.|-.++++.+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~-glEs--------~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RHET--------ADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHcCCCEEEe-cccc--------CCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 45789999999999984 3321 11222333444 2678999999999999999999998887543
No 174
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=38.82 E-value=43 Score=36.78 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=46.7
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
+++|..++++|+|.|.| +|..... .-.-.+ .+-.+.++..+.|+.|++.|+. |-+|+.++.-+.+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d--------~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNN--------NILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 46899999999999874 4443211 111111 2345789999999999999997 9999998876544
No 175
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=38.66 E-value=47 Score=37.53 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=45.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEE-EeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVL-VDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VI-lDvV~NH~~~~ 278 (732)
+++|..|+++|++.|.|- |..+. ..-...+. +--+.++..+.|+.||+.||.+| +|+.++.-+.+
T Consensus 141 ~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIG-VQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 468999999999999863 33221 11111122 22268899999999999999865 99998876654
No 176
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.53 E-value=58 Score=32.96 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=18.6
Q ss_pred HhhhhHHHHCCCCEEEECCcc
Q 035501 204 DDVLPRIRANNYNTVQLMAVM 224 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~ 224 (732)
+.-+..||++|.+.|-.+|+-
T Consensus 138 etAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecC
Confidence 456999999999999999985
No 177
>PRK01060 endonuclease IV; Provisional
Probab=38.06 E-value=80 Score=33.05 Aligned_cols=49 Identities=4% Similarity=0.068 Sum_probs=35.8
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEE
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRV 266 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~V 266 (732)
++.|+.++++|++.|+|.+--. +.+. +..-+.+++++|-+.+.++||++
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p------~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNP------QQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCC------CCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 3579999999999999965321 1111 11237888999999999999985
No 178
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=35.13 E-value=60 Score=35.03 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=42.8
Q ss_pred HhhhhHHHHCCCC-EEEECCcccccccCCCCcccCcc-ccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 204 DDVLPRIRANNYN-TVQLMAVMEHSYYASFGYHVTNF-FAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 204 ~~~LdyLk~LGvt-~I~L~Pi~e~~~~~~~GY~~~~y-~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
++.|..|++.|++ .|.|-. .. .. ..-. ..++-.+ |.+++.+.++.+|++||.|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~-ES-~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL-ET-AN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec-Cc-CC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4679999999998 577643 11 10 1111 1233444 78999999999999999999999875
No 179
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.78 E-value=79 Score=33.44 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=43.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
++.+..||++|++.|.+. +|.. +.-|-.+.+. .+.++..+.++.+|+.||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~~--------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDTS--------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccCC--------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 457999999999999886 3211 1122233332 4789999999999999999988877754
No 180
>PRK06256 biotin synthase; Validated
Probab=34.59 E-value=61 Score=35.16 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
++.+..||+.|++.|.+.. |.. ..-|-.+.+. .+.++..+.++.+|+.||.|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Ets--------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ETS--------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--ccC--------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4678999999999998732 221 1223334443 3789999999999999999988888765
No 181
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=33.25 E-value=2.5e+02 Score=29.80 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHCCCCEEEECCcccccccCCCCcccCccccCC-C-CCCCHHHHHHHHHHHHHCCCEEEEe
Q 035501 209 RIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAAS-S-RSGTPEDLKYLIDKAHSLGLRVLVD 269 (732)
Q Consensus 209 yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~-~-~~Gt~~dfk~LV~~~H~~GI~VIlD 269 (732)
|..+-.|+.|-|.=+..++. -|+-..||-... + .++.-.+|.+-|+.|+++|++|||=
T Consensus 19 ~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 19 YCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 44455688887655554432 233334432221 1 1124568999999999999999993
No 182
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=32.97 E-value=42 Score=30.77 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 244 SRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 244 ~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
.++.+..|+|.+-+.+.++||+|++|=-
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Idkk 43 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKIDKK 43 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEECCc
Confidence 4678899999999999999999999843
No 183
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=32.40 E-value=34 Score=37.35 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 035501 254 YLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIE 333 (732)
Q Consensus 254 ~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~ 333 (732)
..|++||++|++|+-=+.+...+.. .+.+ ..| -.+++.+..+++.|.-.++
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~----------------~~~~------------~lL-~~~~~~~~~~a~kLv~lak 100 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV----------------EWLE------------DFL-KKDEDGSFPVADKLVEVAK 100 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch----------------HHHH------------HHh-ccCcccchHHHHHHHHHHH
Confidence 6789999999999885543322000 0000 000 0113445556666777777
Q ss_pred hcCceEEeecCccc
Q 035501 334 EFKFDGFRFDGVTS 347 (732)
Q Consensus 334 e~giDGfR~D~~~~ 347 (732)
.||+||+=+|.=..
T Consensus 101 ~yGfDGw~iN~E~~ 114 (339)
T cd06547 101 YYGFDGWLINIETE 114 (339)
T ss_pred HhCCCceEeeeecc
Confidence 79999999986543
No 184
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.88 E-value=88 Score=34.27 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=46.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
+++|..++++|||.|.| .|..+. ..-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++--+.+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~--------~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFN--------EDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 46899999999999984 444322 1112122 4455789999999999999996 6699998765543
No 185
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=31.85 E-value=42 Score=37.64 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=30.6
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 237 TNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 237 ~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
..+-+++...|+..+++++++.||++|+-|++|.+
T Consensus 166 vais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 166 VALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 34455667789999999999999999999999998
No 186
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.75 E-value=1.2e+02 Score=27.26 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=40.1
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
.....+..+|++++.+.+..... ...--....|..-+=+.-|...++.++++.||++|++||.
T Consensus 17 ~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 17 KIAATLSSTGTPAFFLHPTEALH-GDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHhhcCCCceEEcccchhhc-cccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 34455677899998876542111 1111122333333335568889999999999999999886
No 187
>PRK05660 HemN family oxidoreductase; Provisional
Probab=31.59 E-value=81 Score=34.98 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=46.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEE-EEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRV-LVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~V-IlDvV~NH~~~~ 278 (732)
.++|..||++|||.|.|-. .. .++.-+-.+ .+..+.++..+-|+.+++.|+.. -+|+.+..-+.+
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS--------~~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QS--------FSEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-Cc--------CCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3689999999999998743 21 112222223 24468999999999999999975 599998876654
No 188
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=31.44 E-value=2.5e+02 Score=30.21 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=62.9
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCccccc-ccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHC--CCEEEEeecccc
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHS-YYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSL--GLRVLVDIVHSH 274 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~--GI~VIlDvV~NH 274 (732)
+...+. +.+..+.++|+++|-|-||-++. ..++..|++.+. +.+-|+++++. .|-||-||-+..
T Consensus 59 sid~l~-~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~------------v~~air~iK~~~pdl~vi~DVcLc~ 125 (322)
T PRK13384 59 PESALA-DEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGL------------LARMVRTIKAAVPEMMVIPDICFCE 125 (322)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCCh------------HHHHHHHHHHHCCCeEEEeeeeccc
Confidence 456665 46899999999999999995431 123333444332 33444444444 899999998765
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
.....-. |-.. ++ .-.|.+..+.|.+...-..+ -|.|-.
T Consensus 126 YT~hGHc---------------------Gil~--~g---~i~ND~Tl~~L~~~Als~A~-AGADiV 164 (322)
T PRK13384 126 YTDHGHC---------------------GVLH--ND---EVDNDATVENLVKQSVTAAK-AGADML 164 (322)
T ss_pred CCCCCce---------------------eecc--CC---cCccHHHHHHHHHHHHHHHH-cCCCeE
Confidence 5432101 1000 00 13467888888888888888 477654
No 189
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=31.29 E-value=2.3e+02 Score=32.26 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeec-ccccCC
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIV-HSHASN 277 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV-~NH~~~ 277 (732)
|++|.+++|+=|.-|||+||-.+- +.|+++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 589999999999999999999885 788875
No 190
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=31.29 E-value=3.1e+02 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred EEEEE---EcCCCCeEEEEec---cCCCCC-cccceeeC-------CCCEEEEEecC
Q 035501 67 IVYRE---WAPAAKEAQLIGD---FNGWDG-SNHKMERN-------EFGVWSISIPD 109 (732)
Q Consensus 67 ~~f~~---wAP~A~~V~L~gd---fn~w~~-~~~~m~~~-------~~GvW~i~ip~ 109 (732)
++|.| +.+.-++|+|+|+ ..+|+. .+.+|... ....|++.+.-
T Consensus 3 ~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~l 59 (112)
T cd05806 3 FRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVEL 59 (112)
T ss_pred EEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEc
Confidence 56766 5577789999983 457875 45677643 34579988863
No 191
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.07 E-value=38 Score=33.25 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=34.5
Q ss_pred hhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 207 LPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 207 LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
|..++++|++.|+|.+....... .. .++++++.+.+.+.||.|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD--------EK---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT--------HH---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc--------cc---------hHHHHHHHHHHHHcCCeEEE
Confidence 45789999999999887643211 00 68899999999999999654
No 192
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=30.67 E-value=2.6e+02 Score=24.63 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=36.3
Q ss_pred EEEEEEcC----CCCeEEEEec---cCCCCCc---cc-ceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAP----AAKEAQLIGD---FNGWDGS---NH-KMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP----~A~~V~L~gd---fn~w~~~---~~-~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
++|+|=.. --++|+|+|+ ..+|+.. +. +|.......|++.++-..+ .-..|||.+..
T Consensus 5 v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~-----~~veyK~v~~~ 72 (103)
T cd05820 5 VIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAG-----TYIEFKFLKAP 72 (103)
T ss_pred EEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCC-----CcEEEEEEEEC
Confidence 67877543 2368999984 4478753 22 6765567889988874321 23567776654
No 193
>PRK15452 putative protease; Provisional
Probab=30.51 E-value=1.1e+02 Score=34.73 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=33.8
Q ss_pred hhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 206 VLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 206 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
.|...-+.|.++|||-.-- + ++.-...+| +.++|++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~-~----~~R~~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPR-Y----SLRVRNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCc-c----chhhhccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 3555567899999983311 1 111111233 568999999999999999977
No 194
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=29.84 E-value=1.4e+02 Score=26.25 Aligned_cols=57 Identities=21% Similarity=0.469 Sum_probs=36.4
Q ss_pred EEEEEEcCC--CCeEEEEecc---CCCCC-cccceeeC----CCCEEEEEecCCCCCCCCCCCceEEEEEEe
Q 035501 67 IVYREWAPA--AKEAQLIGDF---NGWDG-SNHKMERN----EFGVWSISIPDSGGKPAIPHGSRVKFRFKH 128 (732)
Q Consensus 67 ~~f~~wAP~--A~~V~L~gdf---n~w~~-~~~~m~~~----~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~~ 128 (732)
++|++=++. -+.|.|+|+- .+|+. ..++|... +++.|++.+.-.. .....|||.+..
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-----~~~veYKy~~~~ 75 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-----GTSFEYKFIRKE 75 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-----CCcEEEEEEEEc
Confidence 677775442 5679999864 36875 46788643 3589998887421 123567776644
No 195
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=29.32 E-value=93 Score=33.04 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=37.2
Q ss_pred hhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 207 LPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 207 LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
+..+..-.+..|.+.++. ++ -|+ .=+.+++++|++.||++|+.||+|-++...
T Consensus 125 ~~~~~~~~~~~v~i~~~~-~~----tG~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 125 LEAAKTPKTKLLYLNNPN-NP----TGA-----------VLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHhhcCccceEEEEECCC-CC----CCc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 334445567788877733 11 121 125789999999999999999999997644
No 196
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=29.12 E-value=56 Score=36.66 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCC-CCCCCCC-----CHHHHHHHHHHHHHHHHhcCceEEeecCcccc
Q 035501 307 LWD-SRLFNYA-----NWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 307 ~w~-~~~ln~~-----~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~ 348 (732)
.|| +-.|.|+ +|.++++|.+-.+.-.+ -++|||+|.+++.
T Consensus 359 vWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 359 VWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred ecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 353 4567774 78999999999888888 7999999999764
No 197
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.52 E-value=1e+02 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred hhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEee
Q 035501 206 VLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDI 270 (732)
Q Consensus 206 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDv 270 (732)
-+..|+++|++.|- .|-.|.. -..++.++++++|++.||.+|+++
T Consensus 77 ~~~~l~~~G~~~vi-i~~ser~-------------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 77 LPEAVKDAGAVGTL-INHSERR-------------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHHcCCCEEE-Eeccccc-------------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 38899999999994 3322211 124668999999999999999744
No 198
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=28.48 E-value=1e+02 Score=29.78 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=37.3
Q ss_pred hhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 206 VLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 206 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
..--|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|.+.-
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 4555788999777665 2333333322114789999999999999999999854
No 199
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.39 E-value=88 Score=35.62 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=45.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
++.|..|+++|++.|.|-. ... +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+..-+.+
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~--------~~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDF--------NKEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 4689999999999998643 211 11111122 2335789999999999999996 7799998876654
No 200
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=28.22 E-value=1.5e+02 Score=32.22 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccCCC
Q 035501 249 PEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278 (732)
Q Consensus 249 ~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~ 278 (732)
.+.||+|++++|+.|-++++-+. |.+..
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~--H~G~~ 106 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLW--HAGRQ 106 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE----GGG
T ss_pred HHHHHHHHHHHHhcCccceeecc--ccccc
Confidence 78999999999999999999876 55543
No 201
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.03 E-value=93 Score=35.42 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=46.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
++.|..|+++|+|.|.|-. ..+ ++.-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+..-+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 4689999999999998643 211 11111122 3446889999999999999997 8899998866544
No 202
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.52 E-value=1e+02 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVL 267 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VI 267 (732)
+.|+.++++||++|+|.+ -+.. -+..+.++ +.+++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~----~~~~~~~~--------~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETD----DRLSRLDW--------SREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCcc----chhhccCC--------CHHHHHHHHHHHHHcCCCce
Confidence 579999999999999943 2110 01111222 57889999999999999985
No 203
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.52 E-value=69 Score=30.64 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=37.0
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
+|.-.. .-.+-|+++||..-- .|-+.-=||+.+.+++++++++|++||+=..
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye~---------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYEV---------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeEE---------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 444443 457888899985421 1223334899999999999999999998654
No 204
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.15 E-value=1.1e+02 Score=34.93 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=46.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCC-EEEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGL-RVLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI-~VIlDvV~NH~~~~ 278 (732)
++.|..|+++|++.|.|- |.... ..-.-.+ .+..+.++..+.++.+++.|| .|-+|+.++.-+.+
T Consensus 151 ~e~l~~l~~aG~~risiG-vqS~~--------~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLG-VQDFD--------PEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 468999999999999864 32111 1111122 234588999999999999999 89999998876654
No 205
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=26.73 E-value=1.4e+02 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCeEEEEecc---CCCCC-cccceeeCCCCEEEEEecCCCCCCCCCCCceEEEEEE
Q 035501 76 AKEAQLIGDF---NGWDG-SNHKMERNEFGVWSISIPDSGGKPAIPHGSRVKFRFK 127 (732)
Q Consensus 76 A~~V~L~gdf---n~w~~-~~~~m~~~~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~ 127 (732)
-+.|+|+|+- .+|+. ...+|.......|++.+.-.. .....|||-+.
T Consensus 15 Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~-----~~~veyKyv~~ 65 (97)
T cd05810 15 GQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPA-----STNVEWKCLKR 65 (97)
T ss_pred CCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCC-----CCeEEEEEEEE
Confidence 4678999854 47875 457787666789998887432 12346777443
No 206
>PRK05939 hypothetical protein; Provisional
Probab=26.60 E-value=79 Score=35.29 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 242 v~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
|....|...+++++++.||++|+.||+|-.+
T Consensus 140 p~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 140 IANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 4445788899999999999999999999764
No 207
>PLN02808 alpha-galactosidase
Probab=26.50 E-value=88 Score=34.80 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHCCCCEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCCCCCCC
Q 035501 210 IRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDV 288 (732)
Q Consensus 210 Lk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~~~~d~ 288 (732)
|+++||+.|.|=--.........|. ..+++ +| |..||.|++.+|++||+.=+=... +. ....
T Consensus 63 l~~~Gy~yv~iDd~W~~~~rd~~G~-----~~~d~~rF--P~G~~~lad~iH~~GlkfGiy~~~---G~------~tC~- 125 (386)
T PLN02808 63 LAALGYKYINLDDCWAELKRDSQGN-----LVPKASTF--PSGIKALADYVHSKGLKLGIYSDA---GT------LTCS- 125 (386)
T ss_pred hHHhCCEEEEEcCCcCCCCcCCCCC-----EeeChhhc--CccHHHHHHHHHHCCCceEEEecC---Cc------cccC-
Confidence 7999999998733221111111121 12222 23 367999999999999886441110 00 0000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 289 GQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 289 ~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
+ ..|..+.+...-++.+.+ .|||=..+|...
T Consensus 126 -------------------~-------~~pGs~~~e~~DA~~fA~-WGvDylK~D~C~ 156 (386)
T PLN02808 126 -------------------K-------TMPGSLGHEEQDAKTFAS-WGIDYLKYDNCE 156 (386)
T ss_pred -------------------C-------CCCcchHHHHHHHHHHHH-hCCCEEeecCcC
Confidence 0 112334455555677776 899999999875
No 208
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=26.42 E-value=3.9e+02 Score=28.77 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=63.9
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCccccc---cc-CCCCcccCccccCCCCCCCHHHHHHHHHHHHH--CCCEEEEeec
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHS---YY-ASFGYHVTNFFAASSRSGTPEDLKYLIDKAHS--LGLRVLVDIV 271 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~---~~-~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~--~GI~VIlDvV 271 (732)
+...+. +.+..+.++|+++|-|-||-+.. .. ++-.|++.+. +.+-|+++++ -.|-||-||-
T Consensus 49 s~d~l~-~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~------------v~~air~iK~~~pdl~vi~Dvc 115 (320)
T cd04824 49 GVNRLE-EFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGP------------VIQAIKLIREEFPELLIACDVC 115 (320)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCCh------------HHHHHHHHHHhCCCcEEEEeee
Confidence 456666 46999999999999999996331 12 4444554433 3344444444 3899999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 272 HSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 272 ~NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
+.......-.| ..+. .+ .-.|.+..+.|.+...-..+ -|.|-.
T Consensus 116 lc~YT~hGHcG-------------il~~--~g----------~vdND~Tl~~L~k~Avs~A~-AGADiV 158 (320)
T cd04824 116 LCEYTSHGHCG-------------ILYE--DG----------TINNEASVKRLAEVALAYAK-AGAHIV 158 (320)
T ss_pred ccCCCCCCcce-------------eECC--CC----------cCcCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 77554321010 0000 00 13466888888888888888 477654
No 209
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=26.41 E-value=1.5e+02 Score=33.99 Aligned_cols=68 Identities=7% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 195 RVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 195 ~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
.+..|.-.. +-+..+|+||+|+.-+.=-... --.-|... .+.-...+=.++||++|+++||.+|+.+.
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsR--i~P~g~~~------~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSR--LFPQGDEL------TPNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeee--eeeCCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 344566665 4599999999999876433210 00001000 01112356789999999999999999886
No 210
>PRK05967 cystathionine beta-lyase; Provisional
Probab=26.40 E-value=81 Score=35.27 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 242 v~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
|....++..+++++++.||++|+-||+|-++.
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 34446899999999999999999999999975
No 211
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=26.18 E-value=95 Score=36.05 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=43.3
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
+++|+.|+++|+|.|+|-. .... + .-.-.+ .+--|.++..+-++.+++.|++|.+|+.++
T Consensus 206 ~e~L~~L~~~G~~rVslGV-QS~~-------d-~VL~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV-QTIY-------N-DILERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCC-------H-HHHHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 4689999999999999753 2111 0 001112 233468999999999999999999999976
No 212
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=25.93 E-value=74 Score=34.34 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecC
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDG 344 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~ 344 (732)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788999999999999999999999994
No 213
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=25.92 E-value=1.9e+02 Score=32.01 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=35.8
Q ss_pred CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 216 NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 216 t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
+.++++|-..+|. ..-=+.+++++|++.|+++|+-||.|-+|.+..
T Consensus 173 ~~~~i~~~p~NPT---------------G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 173 DVVLLHGCCHNPT---------------GADLTPEQWDELAELLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred CEEEEeCCCCCCC---------------CCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 6888888665443 222268999999999999999999999887653
No 214
>PLN02389 biotin synthase
Probab=25.57 E-value=1.5e+02 Score=32.87 Aligned_cols=60 Identities=7% Similarity=0.088 Sum_probs=43.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
++.+..||+.|++.+.+ .++.. +..|-.+.+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs--------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS--------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC--------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 35799999999999866 23321 1223233322 3789999999999999999988888877
No 215
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=25.46 E-value=65 Score=35.62 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 243 SSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 243 ~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
+...|+..+++++++.||++|+.||+|-++.
T Consensus 168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 3457889999999999999999999999865
No 216
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.27 E-value=99 Score=34.15 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=46.3
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
++.+..|+++|+|.|.|-. .... ..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.+..-+.+
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-qS~~--------~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-QTFN--------DELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 4679999999999988643 3211 1111122 3445789999999999999998 6799998876654
No 217
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=25.15 E-value=3.3e+02 Score=23.70 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=34.4
Q ss_pred EEEEEEcCC--CCeEEEEec---cCCCCC-cccceeeC---CCCEEEEEecCCCCCCCCCCCceEEEEEE
Q 035501 67 IVYREWAPA--AKEAQLIGD---FNGWDG-SNHKMERN---EFGVWSISIPDSGGKPAIPHGSRVKFRFK 127 (732)
Q Consensus 67 ~~f~~wAP~--A~~V~L~gd---fn~w~~-~~~~m~~~---~~GvW~i~ip~~~g~~~~~~g~~Y~~~~~ 127 (732)
++|++=+.. -+++.|+|+ ..+|+. .+.+|... +...|++.+.-.. .....|||.+.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-----~~~veYky~v~ 66 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-----GFSSEYNYYVV 66 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-----CCcEEEEEEEE
Confidence 456555443 468888874 347875 46788642 2348988886431 23467888774
No 218
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.02 E-value=81 Score=34.71 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeecccccCC
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHSHASN 277 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~NH~~~ 277 (732)
|.+-|+++.+.||+.||-||-|=||.|+.-
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 468899999999999999999999999863
No 219
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.99 E-value=99 Score=34.56 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=46.6
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
.++|..|+++|||.|.|- |..+. ..-.-.+ .+--+.++..+.++.+++.|+. |-+|+.+..-+.+
T Consensus 115 ~e~l~~l~~~GvnrislG-vQS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-VQAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-cccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 468999999999999864 33221 1111112 3344789999999999999999 8899999876654
No 220
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=24.65 E-value=2.2e+02 Score=26.14 Aligned_cols=41 Identities=22% Similarity=0.504 Sum_probs=22.9
Q ss_pred EEEEEEc----CCCCeEEEEeccCCCCCc----ccceeeCC-CCEEEEEec
Q 035501 67 IVYREWA----PAAKEAQLIGDFNGWDGS----NHKMERNE-FGVWSISIP 108 (732)
Q Consensus 67 ~~f~~wA----P~A~~V~L~gdfn~w~~~----~~~m~~~~-~GvW~i~ip 108 (732)
|+| +|- .....+.|.++.|+.... ...|++-. .+||..++.
T Consensus 4 VTF-lWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~ 53 (122)
T PF11806_consen 4 VTF-LWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYR 53 (122)
T ss_dssp EEE-EEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEE
T ss_pred EEE-EEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEE
Confidence 566 666 345567777778876432 56788854 589976664
No 221
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.64 E-value=1.3e+02 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
+.++..+.++.||+.||.|..++++.
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 57899999999999999999999875
No 222
>PRK09028 cystathionine beta-lyase; Provisional
Probab=24.53 E-value=92 Score=34.80 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 244 SRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 244 ~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
.-.|...+++++++.||++|+-||+|-++.
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 335889999999999999999999998874
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.8e+02 Score=31.92 Aligned_cols=50 Identities=30% Similarity=0.258 Sum_probs=35.5
Q ss_pred hhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 206 VLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 206 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
.+..+-+-|+++|++-=- ++. .-++. .+| +.++|++.|+-||++|.++.+
T Consensus 18 ~l~~ai~~GADaVY~G~~-~~~---~R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 18 DLKAAIAAGADAVYIGEK-EFG---LRRRA-LNF--------SVEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred HHHHHHHcCCCEEEeCCc-ccc---ccccc-ccC--------CHHHHHHHHHHHHHcCCeEEE
Confidence 355566778999998643 222 12233 444 678899999999999999876
No 224
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.86 E-value=1.4e+02 Score=32.95 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
++.|..|+++|+|.|.|- |.... ..-.-.+ .+-.+.++..+-|+.+++.|+. |-+|+.+.--+.+
T Consensus 99 ~e~l~~l~~~G~~rvsiG-vqS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIG-LQAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEE-CccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 468999999999998764 33211 1111122 2445789999999999999997 7799998865554
No 225
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=23.66 E-value=4.8e+02 Score=28.05 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=62.1
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCccccc-ccCCCCcccCccccCCCCCCCHHHHHHHHHHHHH--CCCEEEEeecccc
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHS-YYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHS--LGLRVLVDIVHSH 274 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~--~GI~VIlDvV~NH 274 (732)
+...+. +.+..+.++|+++|-|-||-+.. ..++-.|++.+. +.+-|.++++ -.|-||-||-+..
T Consensus 49 s~d~l~-~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~------------v~~air~iK~~~p~l~vi~DvcLc~ 115 (314)
T cd00384 49 SVDSLV-EEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGI------------VQRAIRAIKEAVPELVVITDVCLCE 115 (314)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCCh------------HHHHHHHHHHhCCCcEEEEeeeccC
Confidence 456666 46899999999999999995331 123333444322 3333444444 3799999999775
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
.....-. |-.. ++ .-.|.+..+.|.+...-..+ -|.|-.
T Consensus 116 YT~hGHc---------------------Gil~--~~---~idND~Tl~~L~k~Als~A~-AGADiV 154 (314)
T cd00384 116 YTDHGHC---------------------GILK--DD---YVDNDATLELLAKIAVSHAE-AGADIV 154 (314)
T ss_pred CCCCCcc---------------------eecc--CC---cCccHHHHHHHHHHHHHHHH-cCCCee
Confidence 5432101 1000 00 13466888888888887787 477654
No 226
>PRK12928 lipoyl synthase; Provisional
Probab=23.44 E-value=2.2e+02 Score=30.42 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=45.6
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEe
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVD 269 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlD 269 (732)
|...+. +.|..|+++|++.|.+.+... | +-...+=.+|=+|++|..+-+.+.+.|.+-+.-
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~-p---------~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~ 277 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR-P---------SLAHLPVQRYWTPEEFEALGQIARELGFSHVRS 277 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC-C---------CccCCceeeccCHHHHHHHHHHHHHcCCceeEe
Confidence 567776 579999999999998877653 1 111233356778999999999999999876543
No 227
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=23.31 E-value=64 Score=35.16 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 245 RSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 245 ~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
..|+..+++++++.||++|+.||+|-++.
T Consensus 151 ~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 151 NYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 45778899999999999999999999865
No 228
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=23.20 E-value=8.9e+02 Score=30.15 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=40.6
Q ss_pred CCC-CCCCCCCC-----HHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhh-hcceEEEeeccCCC
Q 035501 307 LWD-SRLFNYAN-----WEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNE-YFNATVIAEDVSGM 379 (732)
Q Consensus 307 ~w~-~~~ln~~~-----p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~-~~~~~~iaE~~~~~ 379 (732)
.|+ +..|+|+| |-++++|.+-...=.+ =+||+|+|.+++.--+ ...-++...++ .|+.+++||-.++.
T Consensus 494 ~WGDsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlH---VaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 494 CWGDSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLH---VAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred eecceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCCchh---HHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 353 56788854 4566666655544444 5899999999764110 01112222232 46799999987654
Q ss_pred C
Q 035501 380 P 380 (732)
Q Consensus 380 ~ 380 (732)
.
T Consensus 569 e 569 (1521)
T KOG3625|consen 569 E 569 (1521)
T ss_pred c
Confidence 3
No 229
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.14 E-value=4.2e+02 Score=30.33 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 195 RVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 195 ~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
.+..|.-.. +-+.-+|+||+++--+.=-.. .--..|... + .-...+=.++||++|.++||+.|+-+. |
T Consensus 48 a~d~yhry~-eDi~L~~~lG~~~yRfSIsWs--RI~P~g~~~-----~--N~~gl~~Y~~lid~l~~~GI~P~VTL~--H 115 (467)
T TIGR01233 48 ASDFYHKYP-VDLELAEEYGVNGIRISIAWS--RIFPTGYGE-----V--NEKGVEFYHKLFAECHKRHVEPFVTLH--H 115 (467)
T ss_pred cCchhhhHH-HHHHHHHHcCCCEEEEecchh--hccCCCCCC-----c--CHHHHHHHHHHHHHHHHcCCEEEEecc--C
Confidence 444566665 459999999999987542221 000112111 1 112356789999999999999998665 3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFK 336 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~g 336 (732)
. | -+.+... . . -+.|+++.+++.+-++.-+++||
T Consensus 116 ~-----------d-----lP~~L~~--~---G-------GW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 116 F-----------D-----TPEALHS--N---G-------DFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred C-----------C-----CcHHHHH--c---C-------CCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 2 1122221 0 1 23567888888888888888776
No 230
>PLN02905 beta-amylase
Probab=23.05 E-value=3.2e+02 Score=32.23 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred ceEEEEec-CCCCCCCCCCChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcc----cCccccCCCCCCCHHHHHH
Q 035501 180 PRIYEAHV-GMSSSEPRVNSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYH----VTNFFAASSRSGTPEDLKY 254 (732)
Q Consensus 180 ~~IYE~hv-~~~~~~~~~g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~----~~~y~av~~~~Gt~~dfk~ 254 (732)
.-+|-+-+ ...+.....-..++|. ..|..||.+||+.|-+ +|+ ||.- |..| .....++
T Consensus 265 VpVyVMLPLd~V~~~~~l~~~~al~-a~L~aLK~aGVdGVmv-DVW-------WGiVE~~gP~~Y--------dWsgY~~ 327 (702)
T PLN02905 265 VPVYVMLPLGVINMKCELADPDGLL-KQLRILKSINVDGVKV-DCW-------WGIVEAHAPQEY--------NWNGYKR 327 (702)
T ss_pred eeEEEEeecceecCCCcccCHHHHH-HHHHHHHHcCCCEEEE-eee-------eeeeecCCCCcC--------CcHHHHH
Confidence 44554444 2233444455677776 5699999999999974 444 4421 1222 3467889
Q ss_pred HHHHHHHCCCEEEEeecccccCCC
Q 035501 255 LIDKAHSLGLRVLVDIVHSHASNN 278 (732)
Q Consensus 255 LV~~~H~~GI~VIlDvV~NH~~~~ 278 (732)
|++.+.+.|++|..=+-+.-++.+
T Consensus 328 L~~mvr~~GLKlqvVMSFHqCGGN 351 (702)
T PLN02905 328 LFQMVRELKLKLQVVMSFHECGGN 351 (702)
T ss_pred HHHHHHHcCCeEEEEEEecccCCC
Confidence 999999999999887777666655
No 231
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=22.87 E-value=90 Score=33.65 Aligned_cols=30 Identities=13% Similarity=0.332 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecCc
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDGV 345 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~ 345 (732)
.++..|+.+++++.-|++++++||+-+|--
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE 116 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCc
Confidence 457889999999999999999999999954
No 232
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=22.81 E-value=84 Score=33.80 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecC
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDG 344 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~ 344 (732)
+++..|+-+++++.-+++++|+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 56788999999999999999999999983
No 233
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.81 E-value=4.7e+02 Score=28.21 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=64.0
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccc---cccCCCCcccCccccCCCCCCCHHHHHHHHHHHHH--CCCEEEEeecc
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEH---SYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHS--LGLRVLVDIVH 272 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~--~GI~VIlDvV~ 272 (732)
+...+. +.+..+.++|+++|-|-|+... ...++-.|++.+. +.+-|+++++ -.|-||-||-+
T Consensus 52 s~d~l~-~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~------------v~~air~iK~~~p~l~vi~DVcl 118 (320)
T cd04823 52 SIDELL-KEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNL------------VCRAIRAIKEAFPELGIITDVAL 118 (320)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCCh------------HHHHHHHHHHhCCCcEEEEeeec
Confidence 456666 4689999999999999999531 2234444554433 3344444444 48999999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 273 SHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 273 NH~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
.......-.| -.. + . .-.|.+..+.+.+...-..+ -|.|-.
T Consensus 119 c~YT~hGHcG-------------il~----------~-~--~idND~Tl~~L~~~Avs~A~-AGADiV 159 (320)
T cd04823 119 DPYTSHGHDG-------------IVR----------D-G--GILNDETVEVLCKQALVQAE-AGADIV 159 (320)
T ss_pred cCCCCCCcce-------------ecc----------C-C--cCcCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 7654321010 000 0 0 13467888888888888888 477654
No 234
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.69 E-value=1.4e+02 Score=35.81 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=37.7
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCC-----CCCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS-----RSGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~-----~~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
++.|...|.+|+|+|.+-.+. |+ ..+| .|+.. |.. +++.|++.||.|||==.+
T Consensus 33 ~ddl~~mk~~G~N~V~ig~fa-------W~-------~~eP~eG~fdf~~~-D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 33 MDDLRKMKALGLNTVRIGYFA-------WN-------LHEPEEGKFDFTWL-DEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHhCCCeeEeeeEE-------ee-------ccCccccccCcccc-hHH-HHHHHHhcCceEEEecCC
Confidence 467999999999999986654 21 1222 23333 344 899999999999996654
No 235
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=22.60 E-value=59 Score=34.44 Aligned_cols=27 Identities=41% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEeecc
Q 035501 246 SGTPEDLKYLIDKAHSLGLRVLVDIVH 272 (732)
Q Consensus 246 ~Gt~~dfk~LV~~~H~~GI~VIlDvV~ 272 (732)
+|...+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 477778999999999999999999884
No 236
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=22.57 E-value=84 Score=33.56 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecC
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDG 344 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~ 344 (732)
.++..|+.+++++.-++++||+||+-+|=
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 56788999999999999999999999993
No 237
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=22.39 E-value=2.3e+02 Score=30.31 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCCCChHhHHHhhhhHHHHCCC-CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeec
Q 035501 193 EPRVNSYREFADDVLPRIRANNY-NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 193 ~~~~g~~~~~~~~~LdyLk~LGv-t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
++...+..+=++ -|..|++.|+ +.|.+.||..+- +.+++.+++.+|...|...+.+.+
T Consensus 162 EP~apsp~~Ri~-al~~l~eaGi~~~v~v~PIiP~~--------------------~d~e~e~~l~~~~~ag~~~v~~~~ 220 (297)
T COG1533 162 EPRAPSPEERLE-ALKELSEAGIPVGLFVAPIIPGL--------------------NDEELERILEAAAEAGARVVVYGT 220 (297)
T ss_pred CCCCcCHHHHHH-HHHHHHHCCCeEEEEEecccCCC--------------------ChHHHHHHHHHHHHcCCCeeEeee
Confidence 444455555553 5888999999 789999999421 238999999999999999988877
Q ss_pred cc
Q 035501 272 HS 273 (732)
Q Consensus 272 ~N 273 (732)
..
T Consensus 221 l~ 222 (297)
T COG1533 221 LR 222 (297)
T ss_pred ee
Confidence 54
No 238
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.38 E-value=1.1e+02 Score=33.98 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 242 ASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 242 v~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
|..-.|...+++++++.||++|+.||+|-++.
T Consensus 144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 34445889999999999999999999998865
No 239
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.31 E-value=70 Score=33.86 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEeec
Q 035501 249 PEDLKYLIDKAHSLGLRVLVDIV 271 (732)
Q Consensus 249 ~~dfk~LV~~~H~~GI~VIlDvV 271 (732)
.|-+|+||++|++- |.|+||+-
T Consensus 136 KE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 136 KEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred HHHHHHHHHHhcce-eEEEeecc
Confidence 68899999999998 99999975
No 240
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.97 E-value=1.3e+02 Score=34.25 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=46.6
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCC-CEEEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLG-LRVLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~G-I~VIlDvV~NH~~~~ 278 (732)
+++|..++++|||.|.| .|..+.. .-.-.+ .|--+.++..+-|+.+++.| +.|.+|+++..-+..
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d--------~vLk~l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT--------QVRRRA-GRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 46899999999999974 4553221 000011 23346899999999999999 899999999876654
No 241
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=21.88 E-value=97 Score=32.33 Aligned_cols=42 Identities=36% Similarity=0.571 Sum_probs=31.7
Q ss_pred hhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEee
Q 035501 207 LPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDI 270 (732)
Q Consensus 207 LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDv 270 (732)
+..-+.+|.++|.|+--+= +.+++++|++.||+.||.|++.|
T Consensus 122 I~~Ar~~GADavLLI~~~L----------------------~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 122 IYEARAAGADAVLLIVAAL----------------------DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHcCcccHHHHHHhc----------------------CHHHHHHHHHHHHHcCCeeEEEE
Confidence 5556677777777653220 25789999999999999999986
No 242
>PLN02229 alpha-galactosidase
Probab=21.65 E-value=7.2e+02 Score=28.14 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=32.4
Q ss_pred hHHHHCCCCEEEECCcccccccCCCCcccCccccCCC-CCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 208 PRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASS-RSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 208 dyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~-~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
.-|+++|++.|-|=--.........| -..+++ +| |..+|.|++.+|++||+.=+
T Consensus 92 ~Gl~~~Gy~yv~iDDgW~~~~rd~~G-----~l~~d~~rF--P~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 92 TGLADLGYIHVNIDDCWSNLKRDSKG-----QLVPDPKTF--PSGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred hHHHhCCCEEEEEcCCcCCCCcCCCC-----CEEEChhhc--CCcHHHHHHHHHHCCCceEE
Confidence 34799999999753322111111122 122232 33 34699999999999998744
No 243
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.50 E-value=1.9e+02 Score=31.13 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEeecccccCCC
Q 035501 249 PEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278 (732)
Q Consensus 249 ~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~ 278 (732)
.+.+|++++++|+.|-++++-+ +|.+..
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~ 103 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQ 103 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcC
Confidence 6899999999999999988766 566654
No 244
>PRK07050 cystathionine beta-lyase; Provisional
Probab=21.48 E-value=1.1e+02 Score=34.02 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 245 RSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 245 ~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
-.|...+++++++.||++|+.||+|-.++.
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 357899999999999999999999999654
No 245
>PRK07324 transaminase; Validated
Probab=21.40 E-value=1.4e+02 Score=32.70 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEeeccccc
Q 035501 248 TPEDLKYLIDKAHSLGLRVLVDIVHSHA 275 (732)
Q Consensus 248 t~~dfk~LV~~~H~~GI~VIlDvV~NH~ 275 (732)
+.++++++++.|+++|+.||.|-+|.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 6899999999999999999999998654
No 246
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=21.27 E-value=79 Score=33.91 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEeeccc
Q 035501 247 GTPEDLKYLIDKAHSLGLRVLVDIVHS 273 (732)
Q Consensus 247 Gt~~dfk~LV~~~H~~GI~VIlDvV~N 273 (732)
|...+++++++.||++|+.||+|-++.
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~~ 172 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAHS 172 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEcccc
Confidence 445668999999999999999999963
No 247
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.20 E-value=1.7e+02 Score=30.61 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=35.3
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
+.++-++++|+++|+|.+-- .+.+ +.+.--++++++++.+.+.+.||.|..
T Consensus 25 e~~~~~~~~G~~~iEl~~~~------~~~~-------~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDE------SDER-------LARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHcCCCeEEEecCc------cccc-------hhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 57899999999999995321 1110 111112577899999999999999863
No 248
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=21.09 E-value=6.7e+02 Score=26.61 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=70.4
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCCCCCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGL 283 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~~~~~~ 283 (732)
+..+.-|.+-+++.|-+=|-.. .++.+=.+++++|.+.+ .|.++|-=+-+.-+.+-..++-
T Consensus 33 d~~~~~i~~~~f~llVVDps~~---------------g~~~~~~~~eelr~~~~----gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSYC---------------GPFNTPWTIEELRTKAD----GGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEecccc---------------CCCCCcCcHHHHHHHhc----CCeeEEEEEechhhhhhhhHhh
Confidence 4567888888888887766321 22233357899987765 5666666555543332211100
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEeecCcccc
Q 035501 284 NGFDVGQSSQESYFHTGDRGYHKLW-DSRLFNYANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSM 348 (732)
Q Consensus 284 ~~~d~~~~~~~~yf~~~~~g~~~~w-~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~ 348 (732)
..+. ...+.|--. .-+.| |.....|-.|+-++.|.+-+...++ .|+||.=+|.+...
T Consensus 94 ~~w~---~~~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y 151 (300)
T COG2342 94 KYWL---TGRPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAY 151 (300)
T ss_pred hhhh---cCCcccccC----CCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechH
Confidence 0000 001112111 12346 3346778889999999999999888 59999999999643
No 249
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.95 E-value=1.3e+02 Score=27.18 Aligned_cols=71 Identities=15% Similarity=0.051 Sum_probs=43.3
Q ss_pred CChHhHHHhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 035501 197 NSYREFADDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLV 268 (732)
Q Consensus 197 g~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIl 268 (732)
|+-..++.....+++.+|....-+........ ....-.+.+..-+=+.-|...+..++++.|+++|+++|+
T Consensus 22 g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 22 GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLM-SAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CchHHHHHHHHHHHHHcCCceEEecCHHHHHH-HHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 33344555566778889986665544332110 000112334444445567788999999999999999865
No 250
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.90 E-value=2.2e+02 Score=29.66 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSL-GLRVLV 268 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~-GI~VIl 268 (732)
+.++.++++|++.|+|..-. + .++. .+.. +.+++++|.+.+.++ |+.+.+
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~--~----~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGN--P----RSWL-------SRPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCC--C----CccC-------CCCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 57999999999999987521 1 1111 1111 568899999999888 777765
No 251
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=20.85 E-value=2.1e+02 Score=30.59 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=38.4
Q ss_pred cEEEEEEcCCCCeEEEEeccCCCCCcccceeeCCCC--EEEEEecCCCCCCCCCCCceEEEEEEeCCeEe
Q 035501 66 GIVYREWAPAAKEAQLIGDFNGWDGSNHKMERNEFG--VWSISIPDSGGKPAIPHGSRVKFRFKHDGVFI 133 (732)
Q Consensus 66 g~~f~~wAP~A~~V~L~gdfn~w~~~~~~m~~~~~G--vW~i~ip~~~g~~~~~~g~~Y~~~~~~~g~~~ 133 (732)
-.+---|+++-+.|+|.|.|.+|. ...++.+...+ -+++.+.- +.|. |.|++..+|++.
T Consensus 80 ~pvvi~W~~gg~~v~v~gS~~nWk-~~~~l~~~~~~~~~f~~~~dL-------~~g~-~~~kf~vdge~~ 140 (289)
T KOG1616|consen 80 RPTVIRWSQGGKEVYVDGSFGNWK-TKIPLVRSGKNVGGFSTILDL-------PPGE-HEYKFIVDGEWR 140 (289)
T ss_pred CceEEEecCCCceEEEeccccccc-ccccceecCCCcccceeeEec-------CCce-EEEEEecCCcee
Confidence 345566999999999999999996 34566654333 37666652 3343 455555578764
No 252
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=20.85 E-value=85 Score=34.44 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEeecccc
Q 035501 243 SSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSH 274 (732)
Q Consensus 243 ~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH 274 (732)
+..+|+..+++++++-||+.|+.||+|-.+..
T Consensus 156 ~~~~G~~~~l~~i~~la~~~~~~livDea~~~ 187 (370)
T TIGR02539 156 DGEYGNLPDAGKVAKVCREKGVPLLLNCAYTV 187 (370)
T ss_pred CCCCccccCHHHHHHHHHHcCCeEEEECcccc
Confidence 34458889999999999999999999998654
No 253
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=20.64 E-value=5.4e+02 Score=27.80 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=62.4
Q ss_pred ChHhHHHhhhhHHHHCCCCEEEECCcccc-cccCCCCcccCccccCCCCCCCHHHHHHHHHHHHH--CCCEEEEeecccc
Q 035501 198 SYREFADDVLPRIRANNYNTVQLMAVMEH-SYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHS--LGLRVLVDIVHSH 274 (732)
Q Consensus 198 ~~~~~~~~~LdyLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~--~GI~VIlDvV~NH 274 (732)
+...+. +.+..+.++|+++|-|-|+-+. ...++..|++.+. +.+-|+++++ -.|-||-||-+..
T Consensus 57 s~d~l~-~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~------------v~rair~iK~~~p~l~vi~DVcLc~ 123 (323)
T PRK09283 57 SIDLLV-KEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGL------------VQRAIRAIKKAFPELGVITDVCLDE 123 (323)
T ss_pred CHHHHH-HHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCH------------HHHHHHHHHHhCCCcEEEEeeeccC
Confidence 456666 4689999999999999999322 1123333444333 3333333333 4899999999875
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 035501 275 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWIEEFKFDGF 340 (732)
Q Consensus 275 ~~~~~~~~~~~~d~~~~~~~~yf~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~l~~Wl~e~giDGf 340 (732)
.....-. |-... + .-.|.+..+.+.+...-..+ -|.|-.
T Consensus 124 YT~hGHc---------------------Gil~~-g----~idND~Tl~~L~~~Al~~A~-AGaDiV 162 (323)
T PRK09283 124 YTSHGHC---------------------GILED-G----YVDNDETLELLAKQALSQAE-AGADIV 162 (323)
T ss_pred CCCCCce---------------------ecccC-C----cCcCHHHHHHHHHHHHHHHH-hCCCEE
Confidence 5432101 10000 1 12367888888888888888 477754
No 254
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=20.62 E-value=96 Score=33.08 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEeecCccccccccccccchhhhhHhhhc
Q 035501 315 YANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYF 367 (732)
Q Consensus 315 ~~~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~~~~~~~~g~~~~f~~~~~~~~ 367 (732)
.+++..|+.+++++..+++++|+||+-+|--. +...+...-..|+++++..+
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~~~d~~~~~~fl~eL~~~l 134 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LPADDLPKYVAFLSELRRRL 134 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CChhHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999999999642 11111000135666666554
No 255
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=20.60 E-value=1e+02 Score=33.19 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCceEEeecCcc
Q 035501 317 NWEVLRFLLSNLRWWIEEFKFDGFRFDGVT 346 (732)
Q Consensus 317 ~p~v~~~i~~~l~~Wl~e~giDGfR~D~~~ 346 (732)
++.-|+.+++++.-|+++|++||+-+|-=.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~ 125 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEY 125 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeee
Confidence 457789999999999999999999998654
No 256
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.59 E-value=1.5e+02 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=47.3
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~ 278 (732)
.++|..|+++|||-|.|-. ..+. ..-. ..-.|.-+.++..+.++.|++.++.|-+|+++..-+.+
T Consensus 111 ~e~l~~l~~~GvnRiSiGv-QS~~--------d~~L-~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGV-QSLK--------EDDL-KKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEEC-CcCC--------HHHH-HHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 3689999999999998643 2111 1111 11235557899999999999999999999999887664
No 257
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=20.56 E-value=78 Score=29.40 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCEEEEeecccccC
Q 035501 251 DLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 251 dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
++++|++.||++|+.+|+|-.+.-..
T Consensus 110 ~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 110 PLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CHHHHHHHHHHcCCEEEEeccccccc
Confidence 34889999999999999998866443
No 258
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=20.28 E-value=95 Score=33.99 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEeecC
Q 035501 316 ANWEVLRFLLSNLRWWIEEFKFDGFRFDG 344 (732)
Q Consensus 316 ~~p~v~~~i~~~l~~Wl~e~giDGfR~D~ 344 (732)
.++..|+.+++++.-|+++|++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45688999999999999999999999994
No 259
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.19 E-value=1.4e+02 Score=33.27 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=35.4
Q ss_pred CEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccC
Q 035501 216 NTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHAS 276 (732)
Q Consensus 216 t~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~ 276 (732)
+.++++|-..+| ....=+.+++++|++.|+++|+-||.|-+|.+..
T Consensus 177 ~~~~~~~~p~NP---------------TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 222 (404)
T PTZ00376 177 SVVLLHACAHNP---------------TGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFA 222 (404)
T ss_pred CEEEEeCCCCCC---------------CCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCcc
Confidence 567776655433 2333368999999999999999999999987764
No 260
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.16 E-value=1.3e+02 Score=33.38 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=45.6
Q ss_pred hhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCEEEEeecccccCCC
Q 035501 205 DVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNN 278 (732)
Q Consensus 205 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~VIlDvV~NH~~~~ 278 (732)
++|..|+++|||.|.|- |..+.. .-.-.+ .|--+.++..+.|+.+++.++.|-+|+.++--+..
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d--------~vL~~l-~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALND--------ADLRFL-GRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 57999999999999863 332210 111111 23447899999999999999999999998865544
No 261
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=20.11 E-value=1.6e+02 Score=32.52 Aligned_cols=65 Identities=8% Similarity=0.175 Sum_probs=45.9
Q ss_pred HhhhhHHHHCCCCEEEECCcccccccCCCCcccCccccCCCCCCCHHHHHHHHHHHHHCCCE-EEEeecccccCCC
Q 035501 204 DDVLPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLR-VLVDIVHSHASNN 278 (732)
Q Consensus 204 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~y~av~~~~Gt~~dfk~LV~~~H~~GI~-VIlDvV~NH~~~~ 278 (732)
+++|..++++|||.|.| .|..+. ..-.-.+ .|--+.++..+-|+.+++.|+. |-+|+.+..-+.+
T Consensus 103 ~~~l~~l~~~G~nrisl-GvQS~~--------~~~L~~l-~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINRISI-GVQTFD--------DPLLKLL-GRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCEEEE-ccccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 46899999999999975 343221 1111122 2333688899999999999996 8999998876654
Done!